Psyllid ID: psy16316
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZMV7 | 313 | WD repeat-containing prot | yes | N/A | 0.925 | 0.990 | 0.643 | 1e-125 | |
| Q6NV31 | 313 | WD repeat-containing prot | yes | N/A | 0.925 | 0.990 | 0.636 | 1e-124 | |
| Q8BFQ4 | 313 | WD repeat-containing prot | yes | N/A | 0.925 | 0.990 | 0.636 | 1e-124 | |
| Q6UXN9 | 313 | WD repeat-containing prot | yes | N/A | 0.925 | 0.990 | 0.636 | 1e-124 | |
| Q58E77 | 313 | WD repeat-containing prot | N/A | N/A | 0.925 | 0.990 | 0.627 | 1e-122 | |
| Q6GL39 | 313 | WD repeat-containing prot | yes | N/A | 0.925 | 0.990 | 0.620 | 1e-121 | |
| Q640J6 | 313 | WD repeat-containing prot | N/A | N/A | 0.925 | 0.990 | 0.620 | 1e-121 | |
| O60137 | 357 | Set1 complex component sw | yes | N/A | 0.850 | 0.798 | 0.348 | 8e-48 | |
| P36104 | 329 | COMPASS component SWD2 OS | yes | N/A | 0.832 | 0.848 | 0.348 | 6e-44 | |
| Q9UT39 | 341 | Uncharacterized WD repeat | no | N/A | 0.904 | 0.888 | 0.335 | 7e-43 |
| >sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 200/311 (64%), Positives = 250/311 (80%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTDNV+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGHTK+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNG IR DA+ G L T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Gallus gallus (taxid: 9031) |
| >sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/311 (63%), Positives = 252/311 (81%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S++G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK E+ C+WTG+KFS DGK IL+STNG +R DA+ G L + G+ N+K
Sbjct: 180 DKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G LEASFTPDS++++ GS DG+IH+WNAE G KV +LD H PV +QFNPKF AS
Sbjct: 240 GVILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Danio rerio (taxid: 7955) |
| >sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/311 (63%), Positives = 251/311 (80%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing. Mus musculus (taxid: 10090) |
| >sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/311 (63%), Positives = 251/311 (80%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Homo sapiens (taxid: 9606) |
| >sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 248/311 (79%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTDNV+RS++VAK+FREN+DKI D+S G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V SL +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVSLSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF G+NS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGINSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WT +KFS DGK IL+STNG +R DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Xenopus laevis (taxid: 8355) |
| >sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 193/311 (62%), Positives = 247/311 (79%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTDNV+RS++VAK+FREN+DKI D+S G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WT +KFS DGK IL+STNG +R DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEA+FTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF S
Sbjct: 240 AVTLEATFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFTS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Xenopus tropicalis (taxid: 8364) |
| >sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 193/311 (62%), Positives = 246/311 (79%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD V+RS++VAK+FREN+DKI D+S G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDGVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFIS S DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISASLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WT +KFS DGK IL+STNG +R DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus. Xenopus laevis (taxid: 8355) |
| >sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 171/330 (51%), Gaps = 45/330 (13%)
Query: 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82
+ITS+ + G L ++ DD + +Y+C G +++ SKKYG L RFTH + IHAS
Sbjct: 28 EITSLSFDDSGELCLASCTDDTLQLYNCISGKFVKSLASKKYGAHLGRFTHHSNSLIHAS 87
Query: 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142
TK D+TVRYL + N+Y+RYFPGH + V S+ +SP D+TF+S S D T+RLWDLRSPNCQ
Sbjct: 88 TKEDNTVRYLDVVTNRYLRYFPGHKQTVTSIDVSPADETFLSASLDNTIRLWDLRSPNCQ 147
Query: 143 GIMHVSGSRPIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKFA-AEKECDWTG 200
G+++VS S +AAFD GLIF V I LY+++SFD PF +
Sbjct: 148 GLLNVS-SPVVAAFDATGLIFASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVRIAN 206
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP------LEASFTPDSKY 254
++FS DGKY+L++T DAY+G L + ++ K A +PDSK+
Sbjct: 207 VEFSTDGKYLLLTTGNDFHYVIDAYSGSELLRVPSKVSTKTQDGNLTYYASACMSPDSKF 266
Query: 255 VISGSTDGRI---------------HIWNA--EKGFKVCVLDADH--------------- 282
+ + + + HI N+ E G ++
Sbjct: 267 LFTSYDNEHLCMYQLPELKQTVNSDHIVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTS 326
Query: 283 ----PSPVQTIQFNPKFNMMASACTNLAFW 308
P ++FNP+F+ + +A + + FW
Sbjct: 327 KNLLPETPSIVRFNPRFSQLVTAHSGVIFW 356
|
The Set1 complex specifically methylates 'Lys-4' of histone H3. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 25/304 (8%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83
+TS+++ +G L++ S +D + +Y T+ SKKYG FTHA+ I++ST
Sbjct: 30 VTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNECIYSST 89
Query: 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143
+ ++YL+L N+Y+RYF GH VN L ++P++DTF+S SYD++VRLWDL+ Q
Sbjct: 90 MKNFDIKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQV 149
Query: 144 IMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK 202
I+ I A+DP GL+F +G + I LY+++ +GPF K W ++
Sbjct: 150 IIPSLVPNCI-AYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLE 208
Query: 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE-------ASFTPDSKYV 255
FS +GKY+L+ ++ FDA+ GQ L L G + P+ A FTPD ++V
Sbjct: 209 FSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIG---TRAFPMREFLDSGSACFTPDGEFV 265
Query: 256 ISGSTDGRIHIWNAE----------KGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNL 305
+ DGRI IWN +GF CV H + ++I FNPK++M +A +
Sbjct: 266 LGTDYDGRIAIWNHSDSISNKVLRPQGFIPCV---SHETCPRSIAFNPKYSMFVTADETV 322
Query: 306 AFWI 309
F++
Sbjct: 323 DFYV 326
|
Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 177/331 (53%), Gaps = 28/331 (8%)
Query: 7 VIRSYKVAKLFRENT--DKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKK 63
++ S K A+ FR+N+ I SIDYS G + +CS DD + IYD T+ +
Sbjct: 5 ILSSLKPAQSFRDNSLGSFINSIDYSDSGEYVATTCSADDTVQIYDALDPKQVHTITCFE 64
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
G+++ RFTH + ++TK + ++Y+S++DNK I YF GHT V+S+ +SPI+D F+
Sbjct: 65 TGIEVARFTHHDHNLLLSTTKGNKDIQYVSIYDNKRISYFSGHTDIVSSIEVSPIEDQFV 124
Query: 124 SGSYDKTVRLWDL-RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS-DTIKLYDVRSFD 181
S + DKT++LW + +S C G + + S I A+DP GL+F V +S I LYDVR++
Sbjct: 125 STANDKTLKLWKMNQSSRCLGNLDLP-SLGIPAYDPTGLVFAVACHSLSRIFLYDVRNYG 183
Query: 182 KGPFSNFKFAAEKEC----------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231
PFS F + +W ++FS DGK IL+ST ++ DA++G L
Sbjct: 184 SDPFSTFTIDDSRYLSRFSFPPMMPEWKHMEFSNDGKCILLSTRANVHYILDAFSGDVLS 243
Query: 232 TLAGF----LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF--KVCVLDADHPSP 285
L F +N +F P +VI + D +++WN F K +H
Sbjct: 244 RLEDFQELPFSNNFHGGSTTFVPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIV 303
Query: 286 VQTI------QFNPKFNMMASACTNLAFWIP 310
Q+I ++NP+++ + +A + L FW+P
Sbjct: 304 SQSIINPGLVKYNPRYDQLLTAGSQLVFWLP 334
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| 332373966 | 316 | unknown [Dendroctonus ponderosae] | 0.925 | 0.981 | 0.758 | 1e-143 | |
| 91084031 | 316 | PREDICTED: similar to WD40 protein [Trib | 0.925 | 0.981 | 0.752 | 1e-142 | |
| 242011252 | 336 | COMPASS component SWD2, putative [Pedicu | 0.925 | 0.922 | 0.752 | 1e-142 | |
| 114052198 | 315 | WD40 protein [Bombyx mori] gi|87248441|g | 0.925 | 0.984 | 0.749 | 1e-142 | |
| 345488681 | 315 | PREDICTED: WD repeat-containing protein | 0.925 | 0.984 | 0.745 | 1e-141 | |
| 322783665 | 315 | hypothetical protein SINV_04225 [Solenop | 0.937 | 0.996 | 0.746 | 1e-141 | |
| 357612419 | 314 | WD40 protein [Danaus plexippus] | 0.925 | 0.987 | 0.749 | 1e-141 | |
| 307187770 | 315 | WD repeat-containing protein 82 [Campono | 0.925 | 0.984 | 0.745 | 1e-141 | |
| 332020818 | 315 | WD repeat-containing protein 82 [Acromyr | 0.937 | 0.996 | 0.742 | 1e-140 | |
| 157115819 | 314 | COMPASS component SWD2, putative [Aedes | 0.925 | 0.987 | 0.733 | 1e-140 |
| >gi|332373966|gb|AEE62124.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust.
Identities = 236/311 (75%), Positives = 272/311 (87%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D V+RS++VAK+FRENTDKI SID+S G LISCSEDDQIVIYDCE GT RTV
Sbjct: 3 MKLVDQVVRSFRVAKVFRENTDKINSIDFSTSGDTLISCSEDDQIVIYDCEKGTQVRTVN 62
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGHTKKV SLCLSP++D
Sbjct: 63 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVSLCLSPVED 122
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DKT+RLWDLRSPNCQG+MH+SG RP+AA+DPEGLIF GVNS+ IKLYD+RSF
Sbjct: 123 TFLSGSMDKTLRLWDLRSPNCQGLMHLSG-RPVAAYDPEGLIFAAGVNSECIKLYDLRSF 181
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK A EKECDWTG+KFS DGK ILISTNGSIIR DA++G LQT G LNNK
Sbjct: 182 DKGPFVTFKLAQEKECDWTGLKFSRDGKTILISTNGSIIRLIDAFHGTPLQTFTGHLNNK 241
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS+++ SGSTDGR+H+WNA+ G+KVCVL+ADHP PVQ +QFNPK+ M+AS
Sbjct: 242 GIPIEASFSPDSQFIFSGSTDGRVHVWNADTGYKVCVLNADHPGPVQCVQFNPKYMMLAS 301
Query: 301 ACTNLAFWIPT 311
ACTN+AFWIP+
Sbjct: 302 ACTNMAFWIPS 312
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084031|ref|XP_966556.1| PREDICTED: similar to WD40 protein [Tribolium castaneum] gi|270008003|gb|EFA04451.1| hypothetical protein TcasGA2_TC014755 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/311 (75%), Positives = 272/311 (87%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D V+RS++VAK+FRENTDKI SID+S G LISCSEDDQIVIYDCE GT RTV
Sbjct: 3 MKLVDQVVRSFRVAKVFRENTDKINSIDFSPSGETLISCSEDDQIVIYDCEKGTQVRTVN 62
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGHTKKV SLCLSP++D
Sbjct: 63 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVSLCLSPVED 122
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DKT+RLWDLRSPNCQG+MH+SG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 123 TFLSGSLDKTLRLWDLRSPNCQGLMHLSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 181
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK EKECDWTG+KFS DGK ILISTNGSIIR DA++G LQT G LNNK
Sbjct: 182 DKGPFVTFKLTQEKECDWTGLKFSRDGKTILISTNGSIIRLIDAFHGTPLQTFTGHLNNK 241
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS+++ SGSTDGR+H+WNA+ G+KVCVL+ADHP PVQ +QFNPK+ M+AS
Sbjct: 242 GIPIEASFSPDSQFIFSGSTDGRVHVWNADTGYKVCVLNADHPGPVQCVQFNPKYMMLAS 301
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+P+
Sbjct: 302 ACTNMAFWLPS 312
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242011252|ref|XP_002426369.1| COMPASS component SWD2, putative [Pediculus humanus corporis] gi|212510446|gb|EEB13631.1| COMPASS component SWD2, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/311 (75%), Positives = 271/311 (87%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D V+RS+KVAK+FREN+DKI SID+SA G LISCSEDDQIVIYDCE GT RTV
Sbjct: 23 MKLVDQVVRSFKVAKVFRENSDKINSIDFSATGDTLISCSEDDQIVIYDCEKGTQMRTVN 82
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNK+IRYFPGHTKKV SLC+SP++D
Sbjct: 83 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKFIRYFPGHTKKVVSLCISPVED 142
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+S S DKT+RLWDLRSPNCQG+MH+SG RP+AA+DPEGLIF GVNSD++KLYD+RSF
Sbjct: 143 TFLSASLDKTLRLWDLRSPNCQGLMHLSG-RPVAAYDPEGLIFAAGVNSDSVKLYDLRSF 201
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK EKECDWTG+KFS DGK ILISTNGSIIR DA+ G LQT G LNNK
Sbjct: 202 DKGPFITFKLNQEKECDWTGLKFSRDGKTILISTNGSIIRLIDAFQGTPLQTFTGHLNNK 261
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS++V SGSTDGR+H+WNAE G+KVCVL+A+HP PVQ +QFNPK+ M+AS
Sbjct: 262 GIPIEASFSPDSQFVFSGSTDGRVHVWNAETGYKVCVLNANHPGPVQCVQFNPKYMMLAS 321
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 322 ACTNMAFWLPT 332
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|114052198|ref|NP_001040226.1| WD40 protein [Bombyx mori] gi|87248441|gb|ABD36273.1| WD40 protein [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 233/311 (74%), Positives = 272/311 (87%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D V+RS+KVAK+FRENTDKI SID+S +G LISCSEDDQIVIYDCE GT TV
Sbjct: 2 MKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVN 61
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGHTKKV ++CLSP++D
Sbjct: 62 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVED 121
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DKT+RLWDLRSPNCQG+MH+SG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 122 TFLSGSLDKTLRLWDLRSPNCQGLMHLSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 180
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK EKECDWTG+KFS DGK +LISTNGSIIR DAY+G LQT G LNNK
Sbjct: 181 DKGPFVTFKLNQEKECDWTGLKFSRDGKTMLISTNGSIIRLVDAYHGTPLQTFTGHLNNK 240
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS+Y+ SGSTDGR+H+WNA+ G+KVCVL+ DHP+P+Q +QFNPKF M+AS
Sbjct: 241 GIPIEASFSPDSQYIFSGSTDGRVHVWNADTGYKVCVLNGDHPAPIQCVQFNPKFMMLAS 300
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 301 ACTNMAFWLPT 311
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345488681|ref|XP_001604288.2| PREDICTED: WD repeat-containing protein 82-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/311 (74%), Positives = 274/311 (88%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D V+RS+KVAK+FREN+D+I SID+S G LISCSEDDQIVIYDCE GT RTV
Sbjct: 1 MKLVDTVVRSFKVAKIFRENSDRINSIDFSTTGDTLISCSEDDQIVIYDCEKGTQMRTVN 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STKIDDT+RYLSLHDNKYIRYFPGHTKKV SLC+SP++D
Sbjct: 61 SKKYGVDLIHFTHAKNTAIHSSTKIDDTIRYLSLHDNKYIRYFPGHTKKVVSLCISPVED 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DK++RLWDLRSPNC G+M+VSG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 121 TFLSGSLDKSLRLWDLRSPNCHGVMNVSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+NFK + EKECDWTG+KFS DGK IL+STNGSIIR DA++G LQT G LNNK
Sbjct: 180 DKGPFTNFKLSHEKECDWTGLKFSRDGKTILVSTNGSIIRLIDAFHGTPLQTFTGHLNNK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS++V SGSTDGR+H+WNA+ G+KVCVL+ DHP+PVQ +QFNPK+ M+AS
Sbjct: 240 GIPIEASFSPDSQFVFSGSTDGRVHVWNADTGYKVCVLNGDHPAPVQCVQFNPKYMMLAS 299
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 300 ACTNMAFWLPT 310
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322783665|gb|EFZ11003.1| hypothetical protein SINV_04225 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/315 (74%), Positives = 275/315 (87%), Gaps = 1/315 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D+V+RS+KVAK+FRENTD+I SID+S +G LISCSEDDQIVIYDCE GT RTV
Sbjct: 1 MKLVDHVVRSFKVAKVFRENTDRINSIDFSPNGDTLISCSEDDQIVIYDCEKGTQVRTVN 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGHTKKV SLC+SPI+D
Sbjct: 61 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVSLCISPIED 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DK++RLWDLRSPNC G+M+VSG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 121 TFLSGSLDKSLRLWDLRSPNCHGVMNVSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK + EKECDWTG+KFS DGK ILISTNGS IR DA++G LQT AG+LNNK
Sbjct: 180 DKGPFVTFKLSQEKECDWTGLKFSRDGKTILISTNGSTIRLIDAFHGTPLQTFAGYLNNK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G +EASF+PDS++V SGSTDGR+H+WNAE G+KVCVL+ DHP+PVQ IQFNPK+ M+AS
Sbjct: 240 GIAIEASFSPDSQFVFSGSTDGRVHVWNAETGYKVCVLNGDHPAPVQCIQFNPKYMMLAS 299
Query: 301 ACTNLAFWIPTYLSN 315
ACTN+AFW+PT N
Sbjct: 300 ACTNMAFWLPTIDEN 314
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357612419|gb|EHJ67988.1| WD40 protein [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 233/311 (74%), Positives = 271/311 (87%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D V+RS+KVAK+FRENTDKI SID+S G LISCSEDDQIVIYDCE GT TV
Sbjct: 1 MKLVDQVVRSFKVAKVFRENTDKINSIDFSPSGETLISCSEDDQIVIYDCEKGTQMITVN 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGHTKKV +LCLSP++D
Sbjct: 61 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTLCLSPVED 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DKT+RLWDLRSPNCQG+MH+SG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 121 TFLSGSLDKTLRLWDLRSPNCQGLMHLSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK EKECDWTG+KFS DGK +LISTNGSIIR DAY+G LQT G LNNK
Sbjct: 180 DKGPFVTFKLNQEKECDWTGLKFSRDGKTMLISTNGSIIRLVDAYHGTPLQTFTGHLNNK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS+YV SGSTDGR+H+WNA+ G+KVCVL+ DHP+P+Q +QFNPK+ ++AS
Sbjct: 240 GIPIEASFSPDSQYVFSGSTDGRVHVWNADTGYKVCVLNGDHPAPIQCVQFNPKYMLLAS 299
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 300 ACTNMAFWLPT 310
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187770|gb|EFN72742.1| WD repeat-containing protein 82 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/311 (74%), Positives = 274/311 (88%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D+V+RS+KVAK+FREN+D+I SID+S +G LISCSEDDQIVIYDCE GT RTV
Sbjct: 1 MKLVDHVVRSFKVAKIFRENSDRINSIDFSPNGDTLISCSEDDQIVIYDCEKGTQVRTVN 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGH+KKV SLC+SPI+D
Sbjct: 61 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHSKKVVSLCISPIED 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DK++RLWDLRSPNC G+M+VSG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 121 TFLSGSLDKSLRLWDLRSPNCHGVMNVSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK + EKECDWTG+KFS DGK ILISTNGS IR DA++G LQT AG+LNNK
Sbjct: 180 DKGPFVTFKLSQEKECDWTGLKFSRDGKTILISTNGSTIRLIDAFHGTPLQTFAGYLNNK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G +EASF+PDS++V SGSTDGR+H+WNAE G+KVCVL+ DHP+PVQ IQFNPK+ M+AS
Sbjct: 240 GIAIEASFSPDSQFVFSGSTDGRVHVWNAETGYKVCVLNGDHPAPVQCIQFNPKYMMLAS 299
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 300 ACTNMAFWLPT 310
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332020818|gb|EGI61216.1| WD repeat-containing protein 82 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/315 (74%), Positives = 274/315 (86%), Gaps = 1/315 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKL D+V+RS+KVAK+FRENTD+I SID+S +G LISCSEDDQIVIYDCE GT RTV
Sbjct: 1 MKLVDHVVRSFKVAKVFRENTDRINSIDFSPNGDTLISCSEDDQIVIYDCEKGTQVRTVN 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHAK AIH+STK+DDT+RYLSLHDNKYIRYFPGH+KKV SLC+SPI+D
Sbjct: 61 SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHSKKVVSLCISPIED 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DK++RLWDLRSPNC G+M+VSG RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 121 TFLSGSLDKSLRLWDLRSPNCHGVMNVSG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK + EKECDWTG+KFS DGK ILISTNGS IR DA++G LQT AG LNNK
Sbjct: 180 DKGPFVTFKLSQEKECDWTGLKFSRDGKTILISTNGSTIRLIDAFHGTPLQTFAGHLNNK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G +EASF+PDS++V SGSTDGR+H+WNAE G+KVCVL+ DHP+PVQ IQFNPK+ M+AS
Sbjct: 240 GIAIEASFSPDSQFVFSGSTDGRVHVWNAETGYKVCVLNGDHPAPVQCIQFNPKYMMLAS 299
Query: 301 ACTNLAFWIPTYLSN 315
ACTN+AFW+PT N
Sbjct: 300 ACTNMAFWLPTIDEN 314
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157115819|ref|XP_001658297.1| COMPASS component SWD2, putative [Aedes aegypti] gi|108883467|gb|EAT47692.1| AAEL001211-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/311 (73%), Positives = 274/311 (88%), Gaps = 1/311 (0%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS+KVAK+FRENTDKI +IDYS++G +LISCSEDDQIV++DCE GT RTV
Sbjct: 1 MKLTDSVVRSFKVAKVFRENTDKINAIDYSSNGEMLISCSEDDQIVLFDCEKGTQIRTVN 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHA AIH+STKIDDT+RYLSLHDNKY+RYFPGH+KKV SL +SP++D
Sbjct: 61 SKKYGVDLIHFTHANNTAIHSSTKIDDTIRYLSLHDNKYLRYFPGHSKKVISLNISPVED 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DKT+RLWDLRSPNCQG+MH++G RP+AA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 121 TFLSGSLDKTLRLWDLRSPNCQGVMHLNG-RPVAAYDPEGLIFAAGVNSESIKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK EKECDWTG+KFS DGK ILISTNGSIIR DA++G LQT G LNNK
Sbjct: 180 DKGPFVTFKLNQEKECDWTGLKFSRDGKTILISTNGSIIRLIDAFHGTPLQTFTGHLNNK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS+++ SGSTDGR+H+WNA+ G+K+CVL+ DHP P+Q +QFNPKF M+AS
Sbjct: 240 GIPIEASFSPDSQFIFSGSTDGRVHVWNADTGYKICVLNGDHPGPIQCVQFNPKFMMLAS 299
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 300 ACTNMAFWLPT 310
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| FB|FBgn0032030 | 317 | Wdr82 [Drosophila melanogaster | 0.925 | 0.977 | 0.733 | 1.5e-129 | |
| UNIPROTKB|Q5ZMV7 | 313 | WDR82 "WD repeat-containing pr | 0.925 | 0.990 | 0.643 | 9.1e-116 | |
| UNIPROTKB|E2RGF2 | 313 | WDR82 "Uncharacterized protein | 0.925 | 0.990 | 0.636 | 3.9e-115 | |
| UNIPROTKB|Q6UXN9 | 313 | WDR82 "WD repeat-containing pr | 0.925 | 0.990 | 0.636 | 3.9e-115 | |
| UNIPROTKB|F2Z5U3 | 313 | WDR82 "Uncharacterized protein | 0.925 | 0.990 | 0.636 | 3.9e-115 | |
| MGI|MGI:1924555 | 313 | Wdr82 "WD repeat domain contai | 0.925 | 0.990 | 0.636 | 3.9e-115 | |
| ZFIN|ZDB-GENE-030131-333 | 600 | wdr82 "WD repeat domain contai | 0.982 | 0.548 | 0.599 | 4.6e-112 | |
| UNIPROTKB|F1MG94 | 602 | WDR82 "Uncharacterized protein | 0.907 | 0.504 | 0.632 | 2e-111 | |
| UNIPROTKB|E1BRZ6 | 601 | TWF2 "Twinfilin-2" [Gallus gal | 0.907 | 0.505 | 0.637 | 4.2e-111 | |
| DICTYBASE|DDB_G0278945 | 319 | DDB_G0278945 "WD repeat-contai | 0.919 | 0.965 | 0.490 | 2e-81 |
| FB|FBgn0032030 Wdr82 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
Identities = 228/311 (73%), Positives = 270/311 (86%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
+KL D+V+RS+KVAK+FRENTDKI +ID++ +G LISCSEDDQIVIYDCE GT RTV
Sbjct: 3 IKLIDSVVRSFKVAKIFRENTDKINAIDFAPNGEHLISCSEDDQIVIYDCEKGTQSRTVN 62
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLI FTHA AIH+STK+DDT+RYLSLHDNKY+RYFPGHTKKV SLC+SP++D
Sbjct: 63 SKKYGVDLIHFTHANNTAIHSSTKVDDTIRYLSLHDNKYLRYFPGHTKKVISLCISPVED 122
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TF+SGS DKT+RLWDLRSPNCQG+MH+SG RPIAA+DPEGLIF GVNS++IKLYD+RSF
Sbjct: 123 TFLSGSLDKTLRLWDLRSPNCQGLMHLSG-RPIAAYDPEGLIFAAGVNSESIKLYDLRSF 181
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF FK EKECDWTG+KFS DGK ILISTNGS+IR DA++G LQT G+ NNK
Sbjct: 182 DKGPFVTFKLNQEKECDWTGLKFSRDGKTILISTNGSVIRLVDAFHGTPLQTFTGYPNNK 241
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G P+EASF+PDS+++ SGSTDGR+HIWNA+ G KV VL+ DHP PVQ +QFNPK+ M+AS
Sbjct: 242 GIPIEASFSPDSQFIFSGSTDGRVHIWNADTGNKVSVLNGDHPGPVQCVQFNPKYMMLAS 301
Query: 301 ACTNLAFWIPT 311
ACTN+AFW+PT
Sbjct: 302 ACTNMAFWLPT 312
|
|
| UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 200/311 (64%), Positives = 250/311 (80%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTDNV+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGHTK+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNG IR DA+ G L T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
|
| UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 198/311 (63%), Positives = 251/311 (80%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
|
| UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 198/311 (63%), Positives = 251/311 (80%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
|
| UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 198/311 (63%), Positives = 251/311 (80%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
|
| MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 198/311 (63%), Positives = 251/311 (80%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPT 311
AC+N+AFW+PT
Sbjct: 300 ACSNMAFWLPT 310
|
|
| ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 199/332 (59%), Positives = 257/332 (77%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S++G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK E+ C+WTG+KFS DGK IL+STNG +R DA+ G L + G+ N+K
Sbjct: 180 DKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
G LEASFTPDS++++ GS DG+IH+WNAE G KV +LD H PV +QFNPKF AS
Sbjct: 240 GVILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFAS 299
Query: 301 ACTNLAFWIPTYLSNHQEPDTIDNLKIYLGVL 332
AC+N+ + Y H D D + + +G+L
Sbjct: 300 ACSNMLV-LGAYREPHYIWDK-DYVPVLVGLL 329
|
|
| UNIPROTKB|F1MG94 WDR82 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 193/305 (63%), Positives = 245/305 (80%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTD+V+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGH+K+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
DKGPF+ FK ++ C+WTG+KFS DGK ILISTNGS IR DA+ G + T G+ N+K
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF AS
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299
Query: 301 ACTNL 305
AC+N+
Sbjct: 300 ACSNM 304
|
|
| UNIPROTKB|E1BRZ6 TWF2 "Twinfilin-2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 195/306 (63%), Positives = 244/306 (79%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
MKLTDNV+RS++VAK+FREN+DKI D+S +G +IS S+DD IV+YDC+ G KRT++
Sbjct: 1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
SKKYGVDLIR+THA +++S KIDDT+RYLSLHDNKYIRYFPGHTK+V +L +SP+DD
Sbjct: 61 SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDD 120
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
TFISGS DKT+RLWDLRSPNCQG+MH+ G +P+ +FDPEGLIF GVNS+ +KLYD+RSF
Sbjct: 121 TFISGSLDKTIRLWDLRSPNCQGLMHLQG-KPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179
Query: 181 DK-GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239
DK GPF+ FK ++ C+WTG+KFS DGK ILISTNG IR DA+ G L T G+ N+
Sbjct: 180 DKKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNS 239
Query: 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMA 299
K LEASFTPDS++++ GS DG+IH+WN E G KV VLD H P+ +QFNPKF A
Sbjct: 240 KAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFA 299
Query: 300 SACTNL 305
SAC+N+
Sbjct: 300 SACSNM 305
|
|
| DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 153/312 (49%), Positives = 222/312 (71%)
Query: 1 MKLTDNVIRSYKVAKLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
++LTDNV+++ + KL ++ N+ I S+D++ DG LLI+ S+D+ I +Y+ + G ++T+
Sbjct: 5 LRLTDNVVQNMGIGKLHKDDNSSVINSMDFNKDGSLLITASDDESIHLYNIDTGELQKTL 64
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKI-DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI 118
SKKYGVDLI+FTH + I AS D+++RYLSLHDNKY++YF GH KV S+ +SPI
Sbjct: 65 NSKKYGVDLIKFTHNNNSIICASKNSWDESLRYLSLHDNKYLKYFKGHRNKVVSISMSPI 124
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178
+D F+SGS D T+R+WDLR+ CQG++ +G RP +FDP+G+IF V+ +TIKLYD+R
Sbjct: 125 NDMFLSGSLDDTIRMWDLRTNVCQGLLRRNG-RPAVSFDPQGIIFATAVSVNTIKLYDLR 183
Query: 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238
++DKGPFS+F +WT +KF+ADGKYIL+ST +II D++ G+ Q F N
Sbjct: 184 NYDKGPFSSFSIDHPIPVEWTSMKFTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSFKN 243
Query: 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298
+ G +E+SF+PD++YV+SGS DG +HIW G +V V H S V +Q+NP+ M
Sbjct: 244 DNGSVIESSFSPDAQYVLSGSEDGTVHIWKTLTGEEVAVWGG-HSSTVGRVQWNPRSMMA 302
Query: 299 ASACTNLAFWIP 310
A+AC+NLAFWIP
Sbjct: 303 ATACSNLAFWIP 314
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5ZMV7 | WDR82_CHICK | No assigned EC number | 0.6430 | 0.9253 | 0.9904 | yes | N/A |
| Q6GL39 | WDR82_XENTR | No assigned EC number | 0.6205 | 0.9253 | 0.9904 | yes | N/A |
| Q6UXN9 | WDR82_HUMAN | No assigned EC number | 0.6366 | 0.9253 | 0.9904 | yes | N/A |
| Q8BFQ4 | WDR82_MOUSE | No assigned EC number | 0.6366 | 0.9253 | 0.9904 | yes | N/A |
| P36104 | SWD2_YEAST | No assigned EC number | 0.3486 | 0.8328 | 0.8480 | yes | N/A |
| Q6NV31 | WDR82_DANRE | No assigned EC number | 0.6366 | 0.9253 | 0.9904 | yes | N/A |
| Q58E77 | WD82B_XENLA | No assigned EC number | 0.6270 | 0.9253 | 0.9904 | N/A | N/A |
| Q640J6 | WD82A_XENLA | No assigned EC number | 0.6205 | 0.9253 | 0.9904 | N/A | N/A |
| O60137 | SWD2_SCHPO | No assigned EC number | 0.3484 | 0.8507 | 0.7983 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 335 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-12 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 4e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-39
Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 26/293 (8%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ +T +T + +S DG LL + S D I ++D E G RT+ V + +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
AS D T+R L + +R GHT V+S+ SP S S DKT+++WD+
Sbjct: 65 YL--ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
Query: 137 RSPNCQ--------GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188
+ C + V AF P+G TIKL+D+R+ +
Sbjct: 123 ETGKCLTTLRGHTDWVNSV-------AFSPDGTFVASSSQDGTIKLWDLRTG--KCVATL 173
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
+ + FS DG+ +L S++ I+ +D G+CL TL G N +F
Sbjct: 174 TG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG---VNSVAF 227
Query: 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+PD + SGS DG I +W+ G V L H + V ++ ++P +AS
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWSPDGKRLASG 279
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 58/270 (21%)
Query: 5 DNVIRSYKVAKL-----FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D IR + + +T ++S+ +S DG +L S S D I ++D E G T+
Sbjct: 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
V+ + F+ +S D T++ L K + GHT +VNS+ SP
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQ--DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVR 178
+ +S S D T++LWDL + C G + + + AF P+G + G TI+++D+R
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Query: 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238
+ G+C+QTL+G N
Sbjct: 250 T-----------------------------------------------GECVQTLSGHTN 262
Query: 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ +++PD K + SGS DG I IW+
Sbjct: 263 SVTS---LAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 8e-24
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 12/207 (5%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFD 157
R GHT V + SP +GS D T+++WDL + + H R +AA
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS 217
+ + TI+L+D+ + + + + FS DG+ + S+
Sbjct: 62 DGTYLASGSSDK-TIRLWDLETGEC----VRTLTGH-TSYVSSVAFSPDGRILSSSSRDK 115
Query: 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV 277
I+ +D G+CL TL G + +F+PD +V S S DG I +W+ G V
Sbjct: 116 TIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
Query: 278 LDADHPSPVQTIQFNPKFNMMASACTN 304
L H V ++ F+P + S+ ++
Sbjct: 173 LTG-HTGEVNSVAFSPDGEKLLSSSSD 198
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.8 bits (234), Expect = 1e-21
Identities = 91/311 (29%), Positives = 144/311 (46%), Gaps = 21/311 (6%)
Query: 5 DNVIRSYKVAKLFRE------NTDKITSIDYSADGLLLISCSEDD-QIVIYDCELGTNKR 57
D ++ + ++ + +++ +TS+ +S DG LL S S D I ++D G
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLS 116
T+ V + F+ I AS D T+R L K +R GH+ V S S
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLI-ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFS 250
Query: 117 PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKL 174
P SGS D T+RLWDLRS + S + AF P+G + G + T++L
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTL 233
+D+ + G + E + + FS DG ++ ++ IR +D G+ L+TL
Sbjct: 311 WDLET---GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
G N L SF+PD + V SGSTDG + +W+ G + LD H S V ++ F+P
Sbjct: 368 EGHSNV----LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-HTSRVTSLDFSP 422
Query: 294 KFNMMASACTN 304
+AS ++
Sbjct: 423 DGKSLASGSSD 433
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.3 bits (225), Expect = 2e-20
Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 17/280 (6%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
+R+ K +TD ++S+ +S DG LL+ S S D I ++D G R+ S
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLH-DNKYIRYFPGHTKKVNSLCLSPIDDTFISG 125
+ F+ + AS D T+R L + +R GH+ V S+ SP SG
Sbjct: 245 VVSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 126 SYDKTVRLWDLRSPNCQGIMHVSGSRPI---AAFDPEGLIFGVGVNSD-TIKLYDVRSFD 181
S D TVRLWDL + + + G +F P+G + G + D TI+L+D+R+
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT-- 360
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
P + + + FS DG+ + + +R +D G L+ L G +
Sbjct: 361 GKPLKTLEGHSNV----LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281
F+PD K + SGS+D I +W+ + K D
Sbjct: 417 SL---DFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 9e-20
Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 16/307 (5%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIV-IYDCELGTNKRTVFSKKYG- 65
I+S + + ++S D + +L++ S D V ++D
Sbjct: 101 IKSLEGLHDSSVSKLALSSPDGN---SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES 157
Query: 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-S 124
V + F+ + S+ D T++ L K + GHT V+SL SP I S
Sbjct: 158 VTSLAFSPDGKLLASGSSL-DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 125 GSYDKTVRLWDLRSPNC-QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183
GS D T+RLWDL + + + +++F P+G + G + TI+L+D+RS
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243
+ ++ + FS DGK + ++ +R +D G+ L +L ++G
Sbjct: 277 LRTLSGHSSSVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL-TLKGHEGPV 331
Query: 244 LEASFTPD-SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
SF+PD S V GS DG I +W+ G + + S V ++ F+P +++S
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEGHSNVLSVSFSPDGRVVSSGS 389
Query: 303 TNLAFWI 309
T+ +
Sbjct: 390 TDGTVRL 396
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.5 bits (210), Expect = 2e-18
Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 55/292 (18%)
Query: 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG---VDLIRFT 72
L R + D ITSI +S DG LL+S S D I ++D + G + L +
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 73 HAKQAAIHASTKIDDTVRYLSL-HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS-YDKT 130
+ + AS+ +D TV+ L K IR GH++ V SL SP SGS D T
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179
Query: 131 VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
++LWDLR+ +
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPV-------------------------------------- 201
Query: 191 AAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ + FS DG ++ S ++ IR +D G+ L++ L+ + +SF+
Sbjct: 202 --------SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST---LSGHSDSVVSSFS 250
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
PD + SGS+DG I +W+ + + H S V ++ F+P ++AS
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (162), Expect = 3e-12
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 29/265 (10%)
Query: 5 DNVIRSYKVAK------LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-R 57
D IR + ++ ++D + S +S DG LL S S D I ++D ++ R
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
T+ V + F+ + S+ + L GH V+SL SP
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 118 -IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176
GS D T+RLWDLR+ + + +F P+G + G T++L+D
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
+ + S + T + FS DGK + ++ + IR +D
Sbjct: 399 LST-----GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL------------ 441
Query: 237 LNNKGCPLEASFTPDSKYVISGSTD 261
K SF+PD K + S S+D
Sbjct: 442 ---KTSLKSVSFSPDGKVLASKSSD 463
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-08
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
+ ++ GHT V S+ SP SGS D T++LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
K +R GHT V S+ SP + SGS D TVR+WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 4e-04
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD 49
S ++ K + +T +TS+ +S DG L S S+D I ++D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 6 NVIRSYKVAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
+V RS V ++ +E+ ++ SIDYS AD LL S S+D + ++ G + T+ +K
Sbjct: 561 DVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA- 618
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-IRYFPGHTKKVNSLCLSPIDD-TF 122
+ ++F ++ A D V Y L + K + GH+K V+ + +D T
Sbjct: 619 NICCVQFPSESGRSL-AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--VDSSTL 675
Query: 123 ISGSYDKTVRLWDL 136
+S S D T++LWDL
Sbjct: 676 VSSSTDNTLKLWDL 689
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 5e-04
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+G+ L+TL G + G +F+PD KY+ SGS DG I +W+
Sbjct: 1 SGELLKTLKG---HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 6e-04
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD 49
K+ + + +T +TS+ +S DG LL S S+D + ++D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.002
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
G+ L+TL G + G +F+PD + SGS DG + +W+
Sbjct: 1 GKLLRTLKG---HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| KOG1446|consensus | 311 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282|consensus | 503 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0283|consensus | 712 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0647|consensus | 347 | 100.0 | ||
| KOG0288|consensus | 459 | 100.0 | ||
| KOG0772|consensus | 641 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG1036|consensus | 323 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0285|consensus | 460 | 99.98 | ||
| KOG0268|consensus | 433 | 99.97 | ||
| KOG2096|consensus | 420 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0643|consensus | 327 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0275|consensus | 508 | 99.97 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0274|consensus | 537 | 99.97 | ||
| KOG0277|consensus | 311 | 99.97 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0973|consensus | 942 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG0293|consensus | 519 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0645|consensus | 312 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG0288|consensus | 459 | 99.96 | ||
| KOG0643|consensus | 327 | 99.96 | ||
| KOG0277|consensus | 311 | 99.96 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0310|consensus | 487 | 99.96 | ||
| KOG0305|consensus | 484 | 99.96 | ||
| KOG0276|consensus | 794 | 99.96 | ||
| KOG0299|consensus | 479 | 99.96 | ||
| KOG0301|consensus | 745 | 99.96 | ||
| KOG0306|consensus | 888 | 99.96 | ||
| KOG0300|consensus | 481 | 99.96 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG1407|consensus | 313 | 99.96 | ||
| KOG0316|consensus | 307 | 99.95 | ||
| KOG0640|consensus | 430 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG1332|consensus | 299 | 99.95 | ||
| KOG0289|consensus | 506 | 99.95 | ||
| KOG0641|consensus | 350 | 99.94 | ||
| KOG0308|consensus | 735 | 99.94 | ||
| KOG0305|consensus | 484 | 99.94 | ||
| KOG0639|consensus | 705 | 99.94 | ||
| KOG0973|consensus | 942 | 99.94 | ||
| KOG0650|consensus | 733 | 99.94 | ||
| KOG0641|consensus | 350 | 99.94 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0283|consensus | 712 | 99.94 | ||
| KOG1408|consensus | 1080 | 99.94 | ||
| KOG0264|consensus | 422 | 99.94 | ||
| KOG0299|consensus | 479 | 99.94 | ||
| KOG1274|consensus | 933 | 99.94 | ||
| KOG4328|consensus | 498 | 99.93 | ||
| KOG0268|consensus | 433 | 99.93 | ||
| KOG1273|consensus | 405 | 99.93 | ||
| KOG0647|consensus | 347 | 99.93 | ||
| KOG4283|consensus | 397 | 99.93 | ||
| KOG1539|consensus | 910 | 99.93 | ||
| KOG2445|consensus | 361 | 99.93 | ||
| KOG0269|consensus | 839 | 99.93 | ||
| KOG0267|consensus | 825 | 99.93 | ||
| KOG2106|consensus | 626 | 99.93 | ||
| KOG1408|consensus | 1080 | 99.93 | ||
| KOG2106|consensus | 626 | 99.92 | ||
| KOG0321|consensus | 720 | 99.92 | ||
| KOG2055|consensus | 514 | 99.92 | ||
| KOG0294|consensus | 362 | 99.92 | ||
| KOG0300|consensus | 481 | 99.92 | ||
| KOG0264|consensus | 422 | 99.92 | ||
| KOG1063|consensus | 764 | 99.91 | ||
| KOG0772|consensus | 641 | 99.91 | ||
| KOG2919|consensus | 406 | 99.91 | ||
| KOG0321|consensus | 720 | 99.91 | ||
| KOG1334|consensus | 559 | 99.91 | ||
| KOG1034|consensus | 385 | 99.91 | ||
| KOG0639|consensus | 705 | 99.91 | ||
| KOG4283|consensus | 397 | 99.91 | ||
| KOG0308|consensus | 735 | 99.9 | ||
| KOG0301|consensus | 745 | 99.9 | ||
| KOG1274|consensus | 933 | 99.9 | ||
| KOG0269|consensus | 839 | 99.9 | ||
| KOG1446|consensus | 311 | 99.9 | ||
| KOG0646|consensus | 476 | 99.89 | ||
| KOG0267|consensus | 825 | 99.89 | ||
| KOG1036|consensus | 323 | 99.89 | ||
| KOG0644|consensus | 1113 | 99.89 | ||
| KOG4378|consensus | 673 | 99.89 | ||
| KOG4227|consensus | 609 | 99.89 | ||
| KOG1332|consensus | 299 | 99.89 | ||
| KOG0302|consensus | 440 | 99.89 | ||
| KOG1539|consensus | 910 | 99.88 | ||
| KOG2048|consensus | 691 | 99.87 | ||
| KOG1273|consensus | 405 | 99.87 | ||
| KOG0270|consensus | 463 | 99.87 | ||
| KOG0646|consensus | 476 | 99.86 | ||
| KOG2096|consensus | 420 | 99.86 | ||
| KOG1009|consensus | 434 | 99.86 | ||
| KOG0642|consensus | 577 | 99.86 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.86 | |
| KOG2048|consensus | 691 | 99.86 | ||
| KOG4378|consensus | 673 | 99.85 | ||
| KOG1034|consensus | 385 | 99.85 | ||
| KOG1063|consensus | 764 | 99.85 | ||
| KOG1445|consensus | 1012 | 99.85 | ||
| KOG0307|consensus | 1049 | 99.85 | ||
| KOG2445|consensus | 361 | 99.85 | ||
| KOG1310|consensus | 758 | 99.84 | ||
| KOG0303|consensus | 472 | 99.84 | ||
| KOG0302|consensus | 440 | 99.84 | ||
| KOG4328|consensus | 498 | 99.83 | ||
| KOG0270|consensus | 463 | 99.82 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1538|consensus | 1081 | 99.82 | ||
| KOG2055|consensus | 514 | 99.81 | ||
| KOG0322|consensus | 323 | 99.8 | ||
| KOG1517|consensus | 1387 | 99.79 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| KOG1188|consensus | 376 | 99.79 | ||
| KOG0771|consensus | 398 | 99.78 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG0307|consensus | 1049 | 99.78 | ||
| KOG0650|consensus | 733 | 99.77 | ||
| KOG1524|consensus | 737 | 99.77 | ||
| KOG1524|consensus | 737 | 99.77 | ||
| KOG2110|consensus | 391 | 99.76 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG4497|consensus | 447 | 99.74 | ||
| KOG1963|consensus | 792 | 99.74 | ||
| KOG1009|consensus | 434 | 99.74 | ||
| KOG1188|consensus | 376 | 99.73 | ||
| KOG0771|consensus | 398 | 99.72 | ||
| KOG1587|consensus | 555 | 99.72 | ||
| KOG0649|consensus | 325 | 99.72 | ||
| KOG1538|consensus | 1081 | 99.71 | ||
| KOG0303|consensus | 472 | 99.71 | ||
| KOG0642|consensus | 577 | 99.7 | ||
| KOG1354|consensus | 433 | 99.7 | ||
| KOG2919|consensus | 406 | 99.69 | ||
| KOG1007|consensus | 370 | 99.68 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG2139|consensus | 445 | 99.66 | ||
| KOG1963|consensus | 792 | 99.66 | ||
| KOG0290|consensus | 364 | 99.66 | ||
| KOG1445|consensus | 1012 | 99.65 | ||
| KOG1240|consensus | 1431 | 99.65 | ||
| KOG1007|consensus | 370 | 99.65 | ||
| KOG1523|consensus | 361 | 99.65 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2111|consensus | 346 | 99.64 | ||
| KOG1517|consensus | 1387 | 99.64 | ||
| KOG2321|consensus | 703 | 99.63 | ||
| KOG1587|consensus | 555 | 99.6 | ||
| KOG0290|consensus | 364 | 99.59 | ||
| KOG0649|consensus | 325 | 99.58 | ||
| KOG2394|consensus | 636 | 99.58 | ||
| KOG2110|consensus | 391 | 99.58 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG0322|consensus | 323 | 99.57 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG4497|consensus | 447 | 99.55 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG3881|consensus | 412 | 99.53 | ||
| KOG4227|consensus | 609 | 99.53 | ||
| KOG1272|consensus | 545 | 99.53 | ||
| KOG1310|consensus | 758 | 99.48 | ||
| KOG1523|consensus | 361 | 99.48 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| KOG1240|consensus | 1431 | 99.47 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.46 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| KOG2139|consensus | 445 | 99.44 | ||
| KOG2394|consensus | 636 | 99.43 | ||
| KOG3881|consensus | 412 | 99.42 | ||
| KOG2111|consensus | 346 | 99.42 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.42 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.41 | |
| KOG0644|consensus | 1113 | 99.41 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.41 | |
| KOG4190|consensus | 1034 | 99.4 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.4 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG1272|consensus | 545 | 99.38 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG0974|consensus | 967 | 99.35 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.32 | |
| KOG0974|consensus | 967 | 99.3 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG4547|consensus | 541 | 99.28 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.28 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.28 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG2315|consensus | 566 | 99.22 | ||
| KOG1409|consensus | 404 | 99.22 | ||
| KOG2041|consensus | 1189 | 99.22 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.21 | |
| KOG4547|consensus | 541 | 99.18 | ||
| KOG2314|consensus | 698 | 99.18 | ||
| KOG2315|consensus | 566 | 99.17 | ||
| KOG1409|consensus | 404 | 99.16 | ||
| KOG4532|consensus | 344 | 99.15 | ||
| KOG2321|consensus | 703 | 99.11 | ||
| KOG1334|consensus | 559 | 99.1 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.09 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.05 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.05 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.04 | |
| KOG0280|consensus | 339 | 99.03 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.01 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.0 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG1064|consensus | 2439 | 98.98 | ||
| KOG1354|consensus | 433 | 98.94 | ||
| KOG0280|consensus | 339 | 98.91 | ||
| KOG1064|consensus | 2439 | 98.9 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.9 | |
| KOG1912|consensus | 1062 | 98.88 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.86 | |
| KOG3914|consensus | 390 | 98.86 | ||
| KOG0309|consensus | 1081 | 98.85 | ||
| KOG1832|consensus | 1516 | 98.84 | ||
| KOG3914|consensus | 390 | 98.82 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.81 | |
| KOG4532|consensus | 344 | 98.8 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.79 | |
| KOG2695|consensus | 425 | 98.78 | ||
| KOG4190|consensus | 1034 | 98.76 | ||
| KOG2041|consensus | 1189 | 98.76 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.74 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.71 | |
| KOG0882|consensus | 558 | 98.7 | ||
| KOG1275|consensus | 1118 | 98.69 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.68 | |
| KOG2695|consensus | 425 | 98.67 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.67 | |
| KOG2314|consensus | 698 | 98.66 | ||
| KOG0309|consensus | 1081 | 98.64 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.62 | |
| KOG2114|consensus | 933 | 98.59 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.58 | |
| KOG0882|consensus | 558 | 98.49 | ||
| KOG1832|consensus | 1516 | 98.48 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.48 | |
| KOG1920|consensus | 1265 | 98.47 | ||
| KOG1275|consensus | 1118 | 98.41 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.4 | |
| KOG1912|consensus | 1062 | 98.4 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.37 | |
| KOG2114|consensus | 933 | 98.36 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.33 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.31 | |
| KOG4714|consensus | 319 | 98.28 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.25 | |
| KOG1645|consensus | 463 | 98.24 | ||
| KOG4714|consensus | 319 | 98.24 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.23 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.2 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.18 | |
| KOG2066|consensus | 846 | 98.17 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.13 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.05 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.05 | |
| KOG3617|consensus | 1416 | 98.04 | ||
| KOG2066|consensus | 846 | 98.03 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.02 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.94 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.94 | |
| KOG1920|consensus | 1265 | 97.92 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.92 | |
| KOG1008|consensus | 783 | 97.9 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.9 | |
| KOG3617|consensus | 1416 | 97.88 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.79 | |
| KOG3621|consensus | 726 | 97.73 | ||
| KOG1008|consensus | 783 | 97.7 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.64 | |
| KOG1645|consensus | 463 | 97.61 | ||
| KOG4649|consensus | 354 | 97.6 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.57 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.54 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.53 | |
| KOG3621|consensus | 726 | 97.49 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.48 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.47 | |
| KOG4640|consensus | 665 | 97.41 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.33 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.32 | |
| KOG2444|consensus | 238 | 97.25 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.25 | |
| KOG2395|consensus | 644 | 97.04 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.03 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.01 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.95 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.88 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.86 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.74 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.72 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.69 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.63 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.56 | |
| KOG2079|consensus | 1206 | 96.56 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.53 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.42 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.35 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.22 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.19 | |
| KOG2444|consensus | 238 | 96.17 | ||
| KOG2395|consensus | 644 | 96.16 | ||
| KOG2079|consensus | 1206 | 96.11 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.04 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.0 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.93 | |
| KOG4640|consensus | 665 | 95.83 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 95.81 | |
| KOG1897|consensus | 1096 | 95.81 | ||
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.67 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.66 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 95.59 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.56 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.5 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.43 | |
| KOG4441|consensus | 571 | 95.39 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 95.35 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.24 | |
| KOG2280|consensus | 829 | 95.22 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.12 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.06 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.98 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.98 | |
| KOG4441|consensus | 571 | 94.85 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.77 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.41 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.35 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.63 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.33 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.26 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.98 | |
| KOG1897|consensus | 1096 | 92.78 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 92.77 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.76 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.3 | |
| KOG3630|consensus | 1405 | 92.0 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.74 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.5 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.1 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.1 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.81 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.74 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.72 | |
| KOG2377|consensus | 657 | 90.58 | ||
| KOG3630|consensus | 1405 | 90.53 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.97 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.73 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.41 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 89.18 | |
| KOG4649|consensus | 354 | 88.94 | ||
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.62 | |
| PRK10115 | 686 | protease 2; Provisional | 88.52 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 88.09 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.87 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.78 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 87.49 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.4 | |
| KOG1520|consensus | 376 | 86.86 | ||
| KOG2377|consensus | 657 | 86.78 | ||
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 86.77 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.57 | |
| KOG4460|consensus | 741 | 86.37 | ||
| KOG4659|consensus | 1899 | 84.72 | ||
| KOG1916|consensus | 1283 | 84.66 | ||
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 84.4 | |
| KOG2247|consensus | 615 | 83.98 | ||
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 83.8 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 83.27 | |
| KOG4460|consensus | 741 | 83.04 | ||
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 82.99 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.56 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 82.0 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 81.33 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 80.83 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 80.66 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 80.59 |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=327.18 Aligned_cols=304 Identities=58% Similarity=1.011 Sum_probs=285.9
Q ss_pred HhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 8 ~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
+++|++.++|+.-.+.|.++.|+++|.+|++++.|.+++|||...+++.+++..+++++..++|.+.....+.++...|.
T Consensus 1 l~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 1 LRSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred CcccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
+||+.++.+++.++.+.||...|++++.+|-+..++|+|.|++||+||++..+|+..+...+ .++.+++|+|.++|++.
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALAN 159 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999988776544 67899999999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
..+.|++||+|+.+++|...+....+...+|+.+.|||+|++++.++..+.+++.|..+|....++.++.+....+.+.+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 88899999999999999998888777788999999999999999999999999999999999899988877776778899
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~ 312 (335)
|+||++++++|+.||+|.+|+++++.+.......+.+++.++.|+|...++++++..+.+|.++.
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccc
Confidence 99999999999999999999999999998887668999999999999999999999999998753
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=315.67 Aligned_cols=286 Identities=21% Similarity=0.330 Sum_probs=240.6
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-eeeecccccceEEEEecC---CCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-RTVFSKKYGVDLIRFTHA---KQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i 89 (335)
..+.++|...|.|++|+|||+.+|||+.||+|++||.++|+++ +.+.+|...+..++|.|- +....+++++.|+.+
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 3578999999999999999999999999999999999999875 467889999999999753 344578899999999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cC-----------CcceEEEC
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SG-----------SRPIAAFD 157 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~-----------~~~~~~~~ 157 (335)
++||+..++++..+.||+.+|+|+.|--+| ++.|||.|++||+|+...+.+...+.. .+ ....-+|+
T Consensus 230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred EEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 999999999999999999999999998654 899999999999999988876654421 11 11122455
Q ss_pred CCCCE-------------------------EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE
Q psy16316 158 PEGLI-------------------------FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 158 ~~~~~-------------------------~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
|.++. +++|++|.++.+|+..... .+. .-..++...++.+.||||++++++
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi---~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPI---TRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cch---hhhhchhhheeeEEECCCccEEEE
Confidence 55544 8999999999999976422 122 122355667889999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 213 STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 213 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
++-|+.|++||.++|+.+..+++| ...|..++|+.|.++|++||.|.++++|++.+.....-++ +|.+.|.++.|+
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGH---v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDws 460 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGH---VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWS 460 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhc---cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEec
Confidence 999999999999999998888875 5567889999999999999999999999998776666665 599999999999
Q ss_pred CCCcEEEeeece--eEEe
Q psy16316 293 PKFNMMASACTN--LAFW 308 (335)
Q Consensus 293 p~~~~~~s~~~~--~~~w 308 (335)
|+|..+++|+.+ +++|
T Consensus 461 pDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLW 478 (480)
T ss_pred CCCceeecCCCceEEEee
Confidence 999999999865 7777
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=317.07 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=251.4
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
-|-+++|..+.|++|+++|||||++|.++||+..+...+.++.+|...+..+.|.|.....-+++++.|+++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 47789999999999999999999999999999999988899999999999999999865556788889999999999999
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
.++..++||...|..++|||+|++|+|+|.|.+-|+||++++...... .+...+..++|+++|.++++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 999999999999999999999999999999999999999987643221 2334456789999999999999999999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC-CCcEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP-DSKYV 255 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 255 (335)
+|+++. ..+..++..++.+++|+|+|-.+++++.|++++|||++..+++.++.+|. .-|..+.|+| .|.+|
T Consensus 332 lRtgr~-----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~---nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 332 LRTGRC-----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS---NLVSQVKYSPQEGYFL 403 (459)
T ss_pred cccCcE-----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc---chhhheEecccCCeEE
Confidence 998542 33445577788999999999999999999999999999888877776654 4567799999 78899
Q ss_pred EEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEecc
Q psy16316 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFWIP 310 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~ 310 (335)
+|+|.|++++||...++..+..+ .+|.+.|.+|+.+|++..+++++. ++++|.+
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred EEcccCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99999999999999888888777 679999999999999999999974 6999963
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=301.63 Aligned_cols=294 Identities=18% Similarity=0.300 Sum_probs=238.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
++....+.||.++|.|+.|+|+|+.|||||-|.|+|+||+.+.....+..+|.+.|.+++|+|++. .+++++.|++|+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~ 182 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIR 182 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc--hhhccccCCeEE
Confidence 334456789999999999999999999999999999999999999999999999999999999765 678899999999
Q ss_pred EEEcCCCce-EeeecCCCCCeEEEEECCC-----CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEE
Q psy16316 91 YLSLHDNKY-IRYFPGHTKKVNSLCLSPI-----DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 91 ~~~~~~~~~-~~~~~~H~~~V~~~~~~~~-----~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 163 (335)
+||.++++. .+.++||+..|++++|.|- .++|+|+|.||+|+|||+..+.|+..+ .+...+.++.+.-+ .++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gli 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceE
Confidence 999998765 4789999999999999873 478999999999999999988887655 33445566666544 478
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEE-----------EEccCCC------------------------
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI-----------KFSADGK------------------------ 208 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~s~~~~------------------------ 208 (335)
.+|+.|++|++|+...+. ....+ .++...++.+ +|.|.++
T Consensus 262 ySgS~DrtIkvw~a~dG~--~~r~l---kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGK--LCREL---KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred EecCCCceEEEEEccchh--HHHhh---cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 899999999999976521 11111 1122222333 3344444
Q ss_pred -EEEEEeCCCeEEEEECCCC-eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCe
Q psy16316 209 -YILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPV 286 (335)
Q Consensus 209 -~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v 286 (335)
.++++++|.++.+|+.... +++.++.+|. .-|..+.||||++++|++|-|..|++|+..+|..+..+. +|.++|
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~V 412 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-GHVAAV 412 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-hcccee
Confidence 4999999999999997644 4666666654 456789999999999999999999999999998887774 699999
Q ss_pred EEEEeCCCCcEEEeee--ceeEEecccccccc
Q psy16316 287 QTIQFNPKFNMMASAC--TNLAFWIPTYLSNH 316 (335)
Q Consensus 287 ~~v~~sp~~~~~~s~~--~~~~~w~~~~~~~~ 316 (335)
..++|+.+..+++||+ .++++|.....+..
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 9999999999999997 46888986555443
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=280.21 Aligned_cols=290 Identities=21% Similarity=0.343 Sum_probs=252.4
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.++..++|+||.+.|.++.|++|.++++|+|.||.+.|||.-+......+.-....|-.++|+|.++ +++.++.|+..
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~--~VAcGGLdN~C 121 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN--FVACGGLDNKC 121 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC--eEEecCcCcee
Confidence 4666789999999999999999999999999999999999988877777777778899999998755 67889999999
Q ss_pred EEEEcCCC------ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECC-CCC
Q psy16316 90 RYLSLHDN------KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDP-EGL 161 (335)
Q Consensus 90 ~~~~~~~~------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 161 (335)
.+|++.+. +..+.+.||++-+.|+.|.+ +..|+|+|.|.++.+||+.+++....++ +.+.+-.+.++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99999855 34567899999999999988 5689999999999999999998877664 445566678888 899
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
.|++|+-|++.++||+|... .. +....++..+++++|.|+|.-++++++|++.|+||++..+.+..+. +.....
T Consensus 201 tFvSg~cD~~aklWD~R~~~--c~---qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~ 274 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQ--CV---QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIIC 274 (343)
T ss_pred eEEecccccceeeeeccCcc--ee---EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccC
Confidence 99999999999999999743 22 2234667789999999999999999999999999999988777765 333455
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
.+.+++||..|++|..|..|.++.+||..++++...+ .+|.+.|.+|..+|+|--+++|+ .+++||.
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEe-eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 6889999999999999999999999999999999888 47999999999999999999997 5699994
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=270.41 Aligned_cols=275 Identities=23% Similarity=0.349 Sum_probs=233.0
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeE
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVN 111 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~ 111 (335)
-+|||+|.|-|||+|...+|.|.+++......|+.+..++++..... + ....||+||+.+++ ++.+|++|++.|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAa--a-~~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAA--A-GNQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhh--c-cCCeeEEEEccCCCCCceeEEeccCCceE
Confidence 58999999999999999999999999998999999999988654332 2 36899999998764 6899999999999
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec
Q psy16316 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 112 ~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
++.|..+|+++.|||+||++||||++...|.+.+.....+..+.++|....+++|..+|.|++||++... ......
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~----c~~~li 163 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS----CTHELI 163 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc----cccccC
Confidence 9999999999999999999999999999999988888888889999999999999999999999997521 222334
Q ss_pred cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee---eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ---TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 192 ~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.+....+.+++..|||.+++++.+.|..++|++-+.+... .+..+..|.+.++.+.+|||+++||++|.|.+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 4555677899999999999999999999999987654322 2233444667788999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEeccccccc
Q psy16316 269 AEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFWIPTYLSN 315 (335)
Q Consensus 269 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~~~~~~ 315 (335)
.++-.+....-.+|..++++++||.++.||++|+. ..++|.+.+.+.
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 98764444444579999999999999999999974 589998765553
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=292.66 Aligned_cols=249 Identities=20% Similarity=0.355 Sum_probs=222.1
Q ss_pred cccceeeeccCCccEEEEEECCC--CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
..+..++|+||+..|.++.|+|. +.-||||+.||++++|++++...+..+.+|...|..++|.|++. ++++++.|.
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~ 283 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGK--FLGTASFDS 283 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCc--eeeeccccc
Confidence 35778899999999999999997 56899999999999999999999999999999999999998765 677888999
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (335)
+.|+||+.++..+...+||...|.+++|+++|.+++|||.|..-||||+++++|+-++. +...+-.+.|+|.|..+++|
T Consensus 284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred chhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence 99999999999999999999999999999999999999999999999999999986652 33345567899999999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
+.|++++|||+|... . ......+...|+.++|+| .|.+|++++.|+++++|..+++++++.+.+| .+.|.+
T Consensus 364 s~Dnt~kVWDLR~r~--~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH---e~kV~s 435 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRS--E---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH---EGKVIS 435 (459)
T ss_pred CCCCcEEEeeecccc--c---ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC---ccceEE
Confidence 999999999998632 2 333445566788899999 7888999999999999999999999999875 556889
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
++++||+++++|++.|.++++|.
T Consensus 436 ~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 436 LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999996
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=263.67 Aligned_cols=289 Identities=20% Similarity=0.286 Sum_probs=235.1
Q ss_pred cccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccC-----CcceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCEL-----GTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
...+..+|++|++.|+.++..+.+ ..+.+++.|.++.+|++.. |...+.+.+|...+..+..+++++ ++.++
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~ 81 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSA 81 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEec
Confidence 456778899999999999999875 6899999999999998754 455677888999999999988766 55677
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe---cCCcceEEECCC-
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV---SGSRPIAAFDPE- 159 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~- 159 (335)
+.|+++|+||+.+++..+.|.||...|.+++|+++.++++|||.|++|++||+... |...++. .+-+.++.|+|.
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC
Confidence 89999999999999999999999999999999999999999999999999998754 3333322 334577899997
Q ss_pred -CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 160 -GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 160 -~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
..++++++.|++||+||++..+- ......+...++.+++||||...++|+.|+.+.+||++.++++..+.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l-----~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---- 231 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQL-----RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---- 231 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcch-----hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----
Confidence 68999999999999999986431 11234456677899999999999999999999999999999987765
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC--------CCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH--------PSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h--------~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
+...|.+++|+|+...|+.+. +..|+|||++++..+..+.... .-...+++|+++|..|.+|. +-|++|
T Consensus 232 a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 345678899999866555554 5559999998876554432111 22467899999999999995 458999
Q ss_pred ccc
Q psy16316 309 IPT 311 (335)
Q Consensus 309 ~~~ 311 (335)
+..
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 764
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=264.57 Aligned_cols=288 Identities=23% Similarity=0.322 Sum_probs=242.4
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc-CCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE-LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
++..+.+|.++|..+.|+|+|..|||||.|..|.+|++- ..++...+.+|+.+|..+.|..++.. +.+++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~--i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSH--ILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCE--EEEecCCceEEE
Confidence 345678999999999999999999999999999999953 34556677889999999999987664 556677999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
||.++++.++.+++|..-|++++-+.-| .++.|++.|+++|+||+++..++..+........+.|..++..+.+|+=|+
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999999999999999999999966555 467889999999999999888877766666667788998999999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC----CCeeeeeecccccC-CCCceE
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY----NGQCLQTLAGFLNN-KGCPLE 245 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~-~~~v~~ 245 (335)
.|++||+|..+. .....++...++++..+|+|.++++-+-|.++++||.+ ..+|++.+.++... ....+.
T Consensus 197 ~ikvWd~r~~d~-----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 197 DIKVWDLRKNDG-----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ceeeeccccCcc-----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999986432 23345667788999999999999999999999999986 45667777765332 223567
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEe
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW 308 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w 308 (335)
++|+|+++.+..|+.|+.+++||......+..++ +|.+.|+.++|||..+++.+++.+-+||
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEEcC-CcceeEEEeeecCCCcEEEEeccCceeE
Confidence 8999999999999999999999987655566665 6999999999999999999998876665
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=275.06 Aligned_cols=295 Identities=21% Similarity=0.368 Sum_probs=239.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee---cccccceEEEEecCCCeeEEeecCCC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF---SKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+|+...+++.|.+.|+|++|+|||.++||+|.||++.+||-.+++....+. .|+.++..++|+|++...+.+ +.|
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~--SaD 256 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV--SAD 256 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe--cCC
Confidence 678888999999999999999999999999999999999999999888776 788999999999998765554 458
Q ss_pred CeEEEEEcCCCceE-------------------------------------------eeecCCCCCeEEEEECCCCCEEE
Q psy16316 87 DTVRYLSLHDNKYI-------------------------------------------RYFPGHTKKVNSLCLSPIDDTFI 123 (335)
Q Consensus 87 ~~i~~~~~~~~~~~-------------------------------------------~~~~~H~~~V~~~~~~~~~~~l~ 123 (335)
.++++||+.+++++ +++.||+..|+++..+|++..|.
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 99999988766542 33458999999999999999999
Q ss_pred EeeCCCcEEEeecCCCCceeE-------------------------------EEe-------------------------
Q psy16316 124 SGSYDKTVRLWDLRSPNCQGI-------------------------------MHV------------------------- 147 (335)
Q Consensus 124 s~s~D~~i~vWd~~~~~~~~~-------------------------------~~~------------------------- 147 (335)
||+.||.|.-||..++.+-.. ...
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 999999999999865431100 000
Q ss_pred --------------------------cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEE
Q psy16316 148 --------------------------SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201 (335)
Q Consensus 148 --------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (335)
....++++++|++..+++|+.|+.+++|.+..... .......++...++.+
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l---~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL---KEEAKLLEHRAAITDV 493 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc---cceeeeecccCCceEE
Confidence 00112346789999999999999999999875322 2222345667788999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC
Q psy16316 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281 (335)
Q Consensus 202 ~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~ 281 (335)
++|||+.+|+++...+.+-+||..+.+.... ...-|...|.+++|+|+..++||||.|.+|.||++.+..+...+..+
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~--~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA 571 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTN--RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA 571 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecc--eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc
Confidence 9999999999999999999999998776322 22335667899999999999999999999999999988777777788
Q ss_pred CCCCeEEEEeCCCCcEEEee-eceeEEeccc
Q psy16316 282 HPSPVQTIQFNPKFNMMASA-CTNLAFWIPT 311 (335)
Q Consensus 282 h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~~ 311 (335)
|...|+.|+|--+..++-+| +.+|++|+.+
T Consensus 572 H~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 572 HLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cccCceeEEEecCceEEeccCcceeEEeccc
Confidence 99999999998666665555 4689999764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=292.65 Aligned_cols=298 Identities=26% Similarity=0.428 Sum_probs=252.5
Q ss_pred cccceeeeccC-CccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 10 SYKVAKLFREN-TDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 10 ~~~~~~~~~~h-~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
.+.+.+.+.+| ...|.++.|+++|++|++++.|+.+++|+....+ ..+.+.+|...|..++|++++. .+++++.|
T Consensus 147 ~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D 224 (456)
T KOG0266|consen 147 VFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS--YLLSGSDD 224 (456)
T ss_pred cceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc--EEEEecCC
Confidence 45556667665 8999999999999999999999999999998777 6666678899999999999877 67788899
Q ss_pred CeEEEEEc-CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEE
Q psy16316 87 DTVRYLSL-HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 87 ~~i~~~~~-~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 164 (335)
.++++||+ ..+..+++++||...|++++|+|+++++++|+.|++||+||++++.+...+ .+.+.+..++|++++.+++
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 99999999 556899999999999999999999999999999999999999998888766 3455677889999999999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+++.|+.|++||+..........+....... .++.+.|+|++.++++++.|+.+++||+..+.+...+.+|.....++.
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence 9999999999999875421111122122222 578999999999999999999999999999999999988776545666
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC-CCCeEEEEeCCCCcEEEeee----ceeEEeccc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH-PSPVQTIQFNPKFNMMASAC----TNLAFWIPT 311 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~~~s~~----~~~~~w~~~ 311 (335)
+..+++.++++++|+.|+.|++||..++.....+. +| ...+..++++|..+++++++ ..+++|..+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 67778999999999999999999999877766664 58 88999999999999999887 347777543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=251.32 Aligned_cols=286 Identities=23% Similarity=0.365 Sum_probs=236.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+.+..|+++|.++.|+-||+|.++|+.|++||+||.-.+.++++..+|...|..++.+.+.. .+++++.|..+.+||
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVWD 87 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc--ccccCCCCceEEEEE
Confidence 456789999999999999999999999999999999999999999999999988887776543 567888899999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC-cceEEECCCCCEEEEEEcCCeE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v 172 (335)
+.+++.++.++||.+.|+.+.|+.+...++|||.|.++|+||-++.....+...... -.+..+.-.+..+++|+.||++
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTV 167 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcE
Confidence 999999999999999999999999999999999999999999987654433322221 1234455567789999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
+.||+|.... .. --...++++++|++|++..++++-|+++++.|-.+|+.++.+.+|.+.. +-+.+++.-..
T Consensus 168 RtydiR~G~l---~s----Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-ykldc~l~qsd 239 (307)
T KOG0316|consen 168 RTYDIRKGTL---SS----DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-YKLDCCLNQSD 239 (307)
T ss_pred EEEEeeccee---eh----hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-eeeeeeecccc
Confidence 9999986431 11 1113467899999999999999999999999999999999999987654 34567888888
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCC-eEEEEeCCCCc-EEEeeeceeEEecc
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP-VQTIQFNPKFN-MMASACTNLAFWIP 310 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~-v~~v~~sp~~~-~~~s~~~~~~~w~~ 310 (335)
.++++||+||.|++||+.+...+..+.. |... |.++++||.-. ++.++++.+..|..
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeecc-CCceeEEeeecccCccceeEecCCceeceee
Confidence 8999999999999999998887776653 4445 89999999864 44444566777753
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=266.51 Aligned_cols=289 Identities=20% Similarity=0.356 Sum_probs=248.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+++.+.+.+|..+|+.+-|+|+-.++++++.|++|++||..+++.++.+.+|..++..++|...+ ..+++++.|-.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G--k~l~tcSsDl~~ 174 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG--KYLATCSSDLSA 174 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc--cEEEecCCccch
Confidence 356667888999999999999999999999999999999999999999999999999999998765 566777778889
Q ss_pred EEEEcCC-CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEEE
Q psy16316 90 RYLSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 90 ~~~~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (335)
.+||..+ -++++.+.||...|.++.|-|.|..++|++.|.+|+.||+.++.|...+.. ..=+.++....||.++++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 578888999999999999999999999999999999999999999887633 22345677888999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---------------CCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD---------------GKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
.|.++++|-+.+.+... ...+++.++.+++|.|. +.++.+++.|++|++||+.++.|+-+
T Consensus 255 ~dqtl~vW~~~t~~~k~-----~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKA-----ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred CCceEEEEEeccchhhh-----hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 99999999987642111 12233444555666543 24889999999999999999999999
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
+.+ |...|..++|+|.|+||+++.+|+++++||+.+...+..++ .|+..|++++|+.+.+++++|+ ..+++|+
T Consensus 330 L~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LVG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred Eec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeee
Confidence 877 45678899999999999999999999999999998888886 6999999999999999999996 5688886
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=259.31 Aligned_cols=288 Identities=19% Similarity=0.285 Sum_probs=239.9
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++++.+++++|.+.|.|+++.|...+|+|||.|++|+|||+.++....++.+|...+..++++.- ..++.+++.|+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~V 217 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQV 217 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc--CceEEEecCCCee
Confidence 58888999999999999999999999999999999999999999999999999999999998754 4467788899999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+.||++.++.++.|.||-..|.|++.+|.-..|+||+.|.++|+||+++...+.++. +...+..+.+.|....+++|+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 999999999999999999999999999999999999999999999999987766653 4445556677777777889999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|.+|++||++..+.. . ....+...+++++.+|+...+++++.|. |+-|++..+..+..+.+ +..-+..++.
T Consensus 298 D~tvrlWDl~agkt~--~---tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsg---h~~iintl~~ 368 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTM--I---TLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSG---HNAIINTLSV 368 (460)
T ss_pred CceEEEeeeccCcee--E---eeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccc---ccceeeeeee
Confidence 999999999875321 1 1233455678999999999999988765 89999999887776655 4444566777
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC---C----CCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD---A----DHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~---~----~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
..|+ ++++|+++|.+.+||..++...+... + ..+..|.+.+|...+..|++|. .+|++|.
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 6664 88999999999999998876544331 1 1234688899999999999885 6799994
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=263.68 Aligned_cols=296 Identities=22% Similarity=0.345 Sum_probs=240.4
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc---eeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN---KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
++..+.|..|+++|.-+.||++|+||||||.|.|..+|++..... ..++.+|..+|..+.|+|+....+ +++.|.
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLl--aCg~~e 291 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLL--ACGFDE 291 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEE--ecCchH
Confidence 445577889999999999999999999999999999999876655 667889999999999999987654 445677
Q ss_pred eEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (335)
.+.+||+.++.....++ +|...+.|++|.|||..+++|+.|+++..||+.....-.-. .....+..+++.+||+++.+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence 89999999998887775 45688999999999999999999999999999754321100 01122345788999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
...|..+++++....... . ......+++++++|.+++++++.-.+..+++||++..+.++.+.||... ..+..
T Consensus 372 v~~d~~i~l~~~e~~~dr-----~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~-~fiIr 444 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDR-----G-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG-HFIIR 444 (519)
T ss_pred Eecccceeeechhhhhhh-----c-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc-ceEEE
Confidence 999999999998653211 1 2233456789999999999999999999999999988888888776543 34556
Q ss_pred EEEcC-CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC-cEEEeee--ceeEEeccccccccc
Q psy16316 246 ASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-NMMASAC--TNLAFWIPTYLSNHQ 317 (335)
Q Consensus 246 ~~~sp-~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~~s~~--~~~~~w~~~~~~~~~ 317 (335)
-+|.- +..++|+||+|+.|+||+..++..+..+ .+|...|++|+|+|.. .|+|||+ ++|+||.+... ++|
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~-~rq 518 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN-NRQ 518 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEee-cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc-ccC
Confidence 67765 5589999999999999999999988888 5799999999999976 5788885 78999987655 444
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=267.44 Aligned_cols=285 Identities=17% Similarity=0.321 Sum_probs=235.7
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.-...|..|.|.|+|+.|++|+..|...||+..+-.-+.-...|...|..+.|++++. .+.++..++.|++|+..-..
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchhh
Confidence 3456799999999999999999999999999855444444567889999999998765 55677789999999986654
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
.......|...|.+++|+|.+..++|||.||+|+|||....+...++ .+...+.++.|+|...++++|+.|+.|++||.
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 33333445599999999999999999999999999999877665555 34445678899999999999999999999999
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC-CCcEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVI 256 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 256 (335)
++... +.....+...|.++.|+|++++|++++.|..+++||+++.+.+..+++ |...+.++.|+| ...+|.
T Consensus 252 rSg~c-----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 252 RSGSC-----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---HKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred CCcch-----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc---chhhheeecccccccccee
Confidence 97542 222345666789999999999999999999999999998877776665 455678899999 567899
Q ss_pred EEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccccc
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYL 313 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~ 313 (335)
+|+.||.|..|.+.....+..++.+|...|++++|||-|.+|++|+ .+++.|....-
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 9999999999998755666677788999999999999999999997 46999976433
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=244.34 Aligned_cols=259 Identities=20% Similarity=0.301 Sum_probs=210.1
Q ss_pred ccHHHHhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEee
Q psy16316 3 LTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
|+.+..+...+.+.|.||.-.|..+..++||++++|+|+|+++|+||+.+++..+.+.+|...|..++|+++.. .+.+
T Consensus 45 L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~--qivS 122 (315)
T KOG0279|consen 45 LTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR--QIVS 122 (315)
T ss_pred eccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc--eeec
Confidence 44444555677889999999999999999999999999999999999999999999999999999999998765 4567
Q ss_pred cCCCCeEEEEEcCCCceEeeec-CCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECC
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDP 158 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~ 158 (335)
++.|+++.+||....-.....+ +|++-|+|+.|+|. ...++++|+|++||+||+++.+....+ .+.+....++++|
T Consensus 123 GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC
Confidence 8899999999987654333332 33788999999998 679999999999999999987765443 3455567789999
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc-
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL- 237 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~- 237 (335)
||.+.++|+.|+.+.+||++..+. . ...++...+.+++|+|+.-+|+.++ +..|+|||++++.++.++..-.
T Consensus 203 DGslcasGgkdg~~~LwdL~~~k~--l----ysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~ 275 (315)
T KOG0279|consen 203 DGSLCASGGKDGEAMLWDLNEGKN--L----YSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI 275 (315)
T ss_pred CCCEEecCCCCceEEEEEccCCce--e----EeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc
Confidence 999999999999999999986432 2 1234566789999999887766654 5559999999998887664211
Q ss_pred ---cCCCC--ceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 238 ---NNKGC--PLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 238 ---~~~~~--v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
..... .++++|++||..|.+|-.|+-|++|.+.
T Consensus 276 g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 11122 3467999999999999999999999874
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=280.42 Aligned_cols=272 Identities=22% Similarity=0.380 Sum_probs=220.9
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
|.--...|+|..|++|+++||.|-.|..|++|.+...+ ++.+... ..+... -..+.|-.+.+.|..+
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~-~~l~~~-----------d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDA-SDLSNI-----------DTESADVDVDMLDDDS 440 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccch-hhhccc-----------cccccchhhhhccccC
Confidence 33334559999999999999999999999999987542 1221111 011000 0112244466667777
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
....+.+-||.++|..+.|+|+.++|+|+|+|+++|+|.+.+..+...+. +...+-.+.|+|.|-+||+++.|++.++|
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 77788899999999999999999999999999999999999988876664 23344557899999999999999999999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
...... +.....++-..+.+++|+|+.+|+++|+.|++||+||..+|..++.+.| |.++|.+++|||+|++|
T Consensus 521 s~d~~~-----PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 521 STDHNK-----PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYL 592 (707)
T ss_pred ecccCC-----chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceE
Confidence 986522 2233345666788999999999999999999999999999999999876 66788999999999999
Q ss_pred EEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEecc
Q psy16316 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFWIP 310 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~ 310 (335)
|+|++||.|++||+..+.....+. +|++.|.++.|+.+|.+||+|++ ++++|.+
T Consensus 593 aSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred eecccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999999999998877664 69999999999999999999974 5999965
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=250.48 Aligned_cols=285 Identities=28% Similarity=0.476 Sum_probs=237.0
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.++|++|.++|+++.|+|++++|++++.||.+++||..+++.......+...+..+.|.++.. .+++++.|+.+++|+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 456889999999999999999999999999999999998877777777777787888887763 455556799999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
+..++.+..+.+|...|.++.|+++++++++++.|+.|++||+++++....+. +......+.++|++.+++++..++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 99988888899999999999999998899999889999999998766655443 33445678899999999888889999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
++||++... ....+. .+...+.++.|+|+++.+++++.++.+++||+.+++....+.. +...+.+++|+|++
T Consensus 160 ~i~d~~~~~--~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~ 231 (289)
T cd00200 160 KLWDLRTGK--CVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDG 231 (289)
T ss_pred EEEEccccc--cceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh---cCCceEEEEEcCCC
Confidence 999997532 222222 3334678899999999999999999999999998877766644 34467889999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
.++++++.|+.|++||..++.....+. .|...|.+++|+|+++++++++ +.+++|.
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999989999999998877776665 6888999999999999999886 4577773
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=263.75 Aligned_cols=289 Identities=19% Similarity=0.322 Sum_probs=236.9
Q ss_pred cceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccC-CcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCEL-GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+.+.+|+||+..|+++.|.| .+.+|+|||.|+.|+|||+-. +.+++++.+|..+|..++|+..+.. +.+++.|..+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~--fLS~sfD~~l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTS--FLSASFDRFL 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCe--eeeeecceee
Confidence 45678999999999999999 899999999999999999977 8899999999999999999877654 5567789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
++||+++|+++..++. ...+.|+.|+|++ +.++.|+.|+.|+.||+++++.+..+ ++.+.+..+.|-+++..|++.+
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 9999999999988752 3567899999998 89999999999999999999876554 4445566678899999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC---eeeeeecccccCCCCce
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG---QCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~v~ 244 (335)
+|++++||+.+... +.........+ ...+++.+|+++++++-+-|..|.+|.+... ...+++++|.. .++..
T Consensus 362 Ddks~riWe~~~~v--~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGys~ 436 (503)
T KOG0282|consen 362 DDKSVRIWENRIPV--PIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGYSC 436 (503)
T ss_pred cCccEEEEEcCCCc--cchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-cCcee
Confidence 99999999987532 22211111112 2356899999999999999999999986532 23345666543 46778
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC-cEEEeee--ceeEEec
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-NMMASAC--TNLAFWI 309 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~~s~~--~~~~~w~ 309 (335)
.+.|||||++|++|+.||.+.+||..+..++..+. .|.++|..+.|||-- ..+|+++ |.|++|.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999999999999999999998877777664 589999999999974 5677776 6688884
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=284.72 Aligned_cols=284 Identities=15% Similarity=0.273 Sum_probs=221.2
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc-------eeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN-------KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+..|.+.|.+++|+|+|.+|||||.|++|+|||.+.... ......+...+..++|.+... ..+++++.|++|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK-SQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC-CEEEEEeCCCeE
Confidence 445999999999999999999999999999999864211 011112344677788876532 356777889999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEE-CCCCCEEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF-DPEGLIFGVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 167 (335)
++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||++++.+...+........+.| ++++.++++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 9999999999999999999999999997 678999999999999999998877766554444555666 56799999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC------eeeeeecccccCCC
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG------QCLQTLAGFLNNKG 241 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~~~ 241 (335)
.|++|++||++.... +.. ....+...+..++|. ++.++++++.|+.|++||+..+ +++..+.+ |..
T Consensus 638 ~dg~I~iwD~~~~~~-~~~---~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g---h~~ 709 (793)
T PLN00181 638 ADHKVYYYDLRNPKL-PLC---TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG---HTN 709 (793)
T ss_pred CCCeEEEEECCCCCc-cce---EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---CCC
Confidence 999999999986321 121 123445567889997 7889999999999999999743 34555555 344
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe------------CCCCCCCeEEEEeCCCCcEEEeee--ceeEE
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL------------DADHPSPVQTIQFNPKFNMMASAC--TNLAF 307 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~ 307 (335)
.+..++|+|++++||+|+.|+.|++|+.......... ...|...|.+++|+|++.++++|+ ++|++
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 5667999999999999999999999997654322111 123556799999999999999886 67888
Q ss_pred ec
Q psy16316 308 WI 309 (335)
Q Consensus 308 w~ 309 (335)
|+
T Consensus 790 ~~ 791 (793)
T PLN00181 790 LE 791 (793)
T ss_pred Ee
Confidence 85
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=252.14 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=239.9
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc----------------------------------
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN---------------------------------- 55 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~---------------------------------- 55 (335)
.......|.+|..+++...|||+|.|+|||...|+|||||....+.
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 4455678999999999999999999999999999999999865221
Q ss_pred ------------eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEE
Q psy16316 56 ------------KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123 (335)
Q Consensus 56 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~ 123 (335)
...+.+|...+..+.|.+... .-+++++.|+++.+|.=..-+...+++.|...|+|+.|+|||.+++
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 111233344455555544332 2345677899999998777778888899999999999999999999
Q ss_pred EeeCCCcEEEeecCCCCceeEEE----ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC----------------
Q psy16316 124 SGSYDKTVRLWDLRSPNCQGIMH----VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG---------------- 183 (335)
Q Consensus 124 s~s~D~~i~vWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---------------- 183 (335)
|++.||++.++|-.++.....+. +.+.+-.+.|+||+..+++++.|.++||||+......
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 99999999999999988776653 4566778899999999999999999999998652100
Q ss_pred ----------------------ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee---------
Q psy16316 184 ----------------------PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT--------- 232 (335)
Q Consensus 184 ----------------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------- 232 (335)
.........+|...+++++.+|++.+|++++.||.|.-|+..++.+-+.
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 0001111223555678899999999999999999999999865542110
Q ss_pred --ec------------------------ccccC-------------------------------------------CCCc
Q psy16316 233 --LA------------------------GFLNN-------------------------------------------KGCP 243 (335)
Q Consensus 233 --~~------------------------~~~~~-------------------------------------------~~~v 243 (335)
+. +...+ ...+
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence 00 00000 0112
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCe-eEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEecccccccccCCC
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGF-KVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFWIPTYLSNHQEPD 320 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~~~~~~~~~~~ 320 (335)
.+++++|++..+|.|++||+|+||.++.+. +.......|.++|+.++|||++.|||+++. .+.+|...--..+...+
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence 357899999999999999999999998654 222234569999999999999999999984 47888774444488889
Q ss_pred CccceEEE
Q psy16316 321 TIDNLKIY 328 (335)
Q Consensus 321 ~~~~~~~~ 328 (335)
++|+.|+-
T Consensus 527 ~FHtakI~ 534 (603)
T KOG0318|consen 527 AFHTAKIN 534 (603)
T ss_pred eeeeeeEE
Confidence 99988863
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=240.61 Aligned_cols=287 Identities=21% Similarity=0.306 Sum_probs=237.6
Q ss_pred ceeeeccCCccEEEEEEC---CCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 13 VAKLFRENTDKITSIDYS---ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s---~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.-.+..||+++|..+.|| |+|-+|+|++.|+...+-+-++|.-+.++.+|+..|-..... .+....++++.|-+.
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~--~na~~aasaaadfta 83 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLN--KNATRAASAAADFTA 83 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecC--chhhhhhhhcccchh
Confidence 345688999999999998 489999999999999999999999999999999998776654 344566778889999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE--EEecCCcceEEECCCCCEEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI--MHVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
++||.-++..+..++ |+.-|.+++|+.|.+.|+||+.++.+|++|++....... -.+.+.+..+.|....+.+.+++
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 999999999888886 999999999999999999999999999999998765432 22333444445555555666668
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
.|++|++||.++... ...+ +.+.+++++.++++|+++.++ .++.|.+||..+...++.+.. ...|.+.+
T Consensus 163 dd~tVRLWD~rTgt~--v~sL----~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~----P~nV~SAS 231 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTE--VQSL----EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM----PCNVESAS 231 (334)
T ss_pred cCCceEEEEeccCcE--EEEE----ecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC----cccccccc
Confidence 999999999997432 2222 234567889999999987665 677899999999988877653 33466789
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYL 313 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~ 313 (335)
++|+...+++|++|..++.||..++..+.....+|.++|.+|.|+|+|...|+|+ ++|++|..++.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 9999999999999999999999999988876678999999999999999999996 78999986543
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=229.17 Aligned_cols=287 Identities=19% Similarity=0.346 Sum_probs=226.4
Q ss_pred ccceeeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCC---cceeee-ecccccceEEEEecCCCeeEEeecCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELG---TNKRTV-FSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
+.+.+.+++|+++|..++|+|- |.+|||||.|+.||+|+...+ .+...+ .+|+-.|..++|+|.+. ++++++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeec
Confidence 5567889999999999999998 899999999999999998753 222222 24777899999998766 7888899
Q ss_pred CCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC---ceeEE-EecCCcceEEECCC
Q psy16316 86 DDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN---CQGIM-HVSGSRPIAAFDPE 159 (335)
Q Consensus 86 d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~---~~~~~-~~~~~~~~~~~~~~ 159 (335)
|.++.+|.-..+ +++.+++||...|.|++|+++|++|+|||.|++|=+|.+..+. |..++ .+...+..+.|+|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999999987654 6788999999999999999999999999999999999987443 44444 23444566789999
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
..++++++.|++|++|+-.. ...........++...+-+++|+|.|..|+++++|++++||-..+. +.. .+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~--~~ 232 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSG--MH 232 (312)
T ss_pred cceeEEeccCCeEEEEeecC--CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cch--hc
Confidence 99999999999999998653 2233334444556667789999999999999999999999986632 211 13
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC------eeEEEeCCCCCCCeEEEEeCCC-CcEEEeee--ceeEEecc
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG------FKVCVLDADHPSPVQTIQFNPK-FNMMASAC--TNLAFWIP 310 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~------~~~~~~~~~h~~~v~~v~~sp~-~~~~~s~~--~~~~~w~~ 310 (335)
...+..++|. ...||||+.|+.|++|.-... .........|...|++|+|+|. .+.|++++ |.+++|.+
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 3455668887 568999999999999976542 1122234679999999999995 57777775 66899975
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=232.29 Aligned_cols=243 Identities=25% Similarity=0.391 Sum_probs=209.0
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc------ceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT------NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+.-....|..++|+|+|+++|.||-|....||++.+.. ..+.+.+|..-+++++|..+.. +.+++.|.+..
T Consensus 93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCa 169 (343)
T KOG0286|consen 93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCA 169 (343)
T ss_pred EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEE
Confidence 34456789999999999999999999999999998652 3345677888899999987432 34566699999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+||+++++.++.|.||.+.|.++++.| +++.++||+-|++.++||++.+.|...+ .+...+..+.|.|+|.-|++|++
T Consensus 170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC
Confidence 999999999999999999999999999 8999999999999999999999988766 34556788999999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+++++||+|.-+.. ..+ ......+.+++++||..|++|.++..|..+.+||.-.++.+..+.+| ...|.++..
T Consensus 250 D~tcRlyDlRaD~~~--a~y-s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH---eNRvScl~~ 323 (343)
T KOG0286|consen 250 DATCRLYDLRADQEL--AVY-SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH---ENRVSCLGV 323 (343)
T ss_pred CceeEEEeecCCcEE--eee-ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc---CCeeEEEEE
Confidence 999999999974322 222 23345678899999999999999999999999999999888888775 455778999
Q ss_pred cCCCcEEEEEeCCCcEEEEE
Q psy16316 249 TPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd 268 (335)
+|||.-++|||.|..++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=222.67 Aligned_cols=273 Identities=16% Similarity=0.291 Sum_probs=222.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
....++++-....|+.+...|++++||.|+.- .||+||+.++.. +.++.+|...|..+.|..++ ..+.+++.|++
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg--rWMyTgseDgt 106 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG--RWMYTGSEDGT 106 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecC--eEEEecCCCce
Confidence 44456777788899999999999999999875 899999998765 67888898999999998764 46788899999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC--CcceEEECCCCCEEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 166 (335)
+++||++...+.+.|+ |..+|+++..+|....|++|..+|.|++||++...|........ .+..+.+.|+|..++.+
T Consensus 107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 9999999977777776 78999999999999999999999999999999887766554433 34557889999999999
Q ss_pred EcCCeEEEEEccCCCC-CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-eeeeeecccccCCCCce
Q psy16316 167 VNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~ 244 (335)
.+.|.+.+|++-.... .++.+......+...+..+.+|||+++|++++.|.+++||++++. +....+++ +...+.
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g---h~rWvW 262 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG---HQRWVW 262 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec---CCceEE
Confidence 9999999999875321 122222222334455677889999999999999999999999988 44445544 456889
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
.++||.||+||+||+.|+.+++|+++.++++..... |-.+-.+++.
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g-h~K~~vc~~l 308 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG-HHKAAVCVAL 308 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCC-cccccEEEEe
Confidence 999999999999999999999999999998888764 5555556554
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=240.39 Aligned_cols=250 Identities=24% Similarity=0.426 Sum_probs=215.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC-CcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL-GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.+++.+.++||++.|..++|+..|++|||+|.|=.+++||.++ ..+++...+|+..+.++.|-|.+ ..+++++.|.+
T Consensus 139 tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~t 216 (406)
T KOG0295|consen 139 TGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNT 216 (406)
T ss_pred chhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC--Ceeeecccccc
Confidence 3566788999999999999999999999999999999999987 56777888899999999999876 56788899999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECC---------
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDP--------- 158 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~--------- 158 (335)
|+.|++.++.+++++++|..-|..++.+.||..++||+.|.+|++|-+.+++|..++ .+...+.+++|.|
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 999999999999999999999999999999999999999999999999998776544 2333444444432
Q ss_pred ------CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 159 ------EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 159 ------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
.+.++++++.|++|++||+.... .+. ...++...+.+++|+|.|+||++..+|+++++||+.+++|.+.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~--cL~---tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGM--CLF---TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCe--EEE---EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 24689999999999999998742 222 2345566788999999999999999999999999999999998
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+.. +...+.+++|+-+..+++||+-|.++++|+.
T Consensus 372 ~~a---h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 372 LEA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCC---CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 875 4567889999999999999999999999974
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=260.82 Aligned_cols=210 Identities=25% Similarity=0.453 Sum_probs=188.7
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
...+.+-||+++|..++|+|+.++|+|||.|+++|+|.+.+..+.-...+|..+|-.++|+|- +-.+++++.|++.++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArL 519 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARL 519 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeee
Confidence 344668999999999999999999999999999999999999999888899999999999964 567888899999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
|..+...+.+.+.||.+.|.|+.|||+.++++|||.|.+||+||..++.+
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~------------------------------ 569 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS------------------------------ 569 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE------------------------------
Confidence 99999999999999999999999999999999999999999999987643
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|++|. ++..++.+++|||.|++|++|+.++.|.+||+.+++.+..+.+| .+.+.++.||.+
T Consensus 570 VRiF~----------------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H---t~ti~SlsFS~d 630 (707)
T KOG0263|consen 570 VRIFT----------------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH---TGTIYSLSFSRD 630 (707)
T ss_pred EEEec----------------CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc---cCceeEEEEecC
Confidence 44441 23456678999999999999999999999999999998888876 566788999999
Q ss_pred CcEEEEEeCCCcEEEEECCCC
Q psy16316 252 SKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~ 272 (335)
|..||+||.|..|++||+.+.
T Consensus 631 g~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCEEEecCCCCeEEEEEchhh
Confidence 999999999999999998643
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=259.82 Aligned_cols=290 Identities=14% Similarity=0.252 Sum_probs=241.3
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
+.|...+.+|..++|+|...+++++=..|.|++||.+.+.++..+..|.++|..+.|++. ..++.+++.|..|++|+.
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence 346677889999999999999999999999999999999999999999999999999875 457889999999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
++.+++.++.||-+-|..+.||+.-.+++|+|.|-+||||+..+..|+.+.. +.+-+.+..|+|...++++++-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 9999999999999999999999999999999999999999999999987763 344456678999999999999999999
Q ss_pred EEEccCCCCCceee-----------------------EEe-ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 174 LYDVRSFDKGPFSN-----------------------FKF-AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 174 iwd~~~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
+||+...+.+...+ .++ ..++...++-++|+|.-+.+++|++|+.|++|.+...+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99987543221110 011 123444567799999999999999999999999875542
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEe
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFW 308 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w 308 (335)
-++....+|.+.|.++-|+|...++++.|+|+.|++||+.+...+.++.- ..+.-|.++-||..+++|+|- +.+.++
T Consensus 241 -WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 241 -WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred -eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeecCCceEEE
Confidence 23333344556677899999999999999999999999988776666643 346889999999999999994 334443
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=240.22 Aligned_cols=283 Identities=17% Similarity=0.302 Sum_probs=226.7
Q ss_pred eeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccC--Cccee-eee-----------cccccceEEEEecCCCee
Q psy16316 14 AKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCEL--GTNKR-TVF-----------SKKYGVDLIRFTHAKQAA 78 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~--~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~ 78 (335)
.+.++ |+.+|++.+|+|... .||+|+.|-+.++|++.. ..+.. ..+ .....|+.++|..++.
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-- 248 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-- 248 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--
Confidence 34555 999999999999876 999999999999999863 11111 001 1124588899986654
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcce-EEEC
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI-AAFD 157 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~-~~~~ 157 (335)
+++.++.||.+|+|+... ..+.+|.-|+++|.++.|+..|++|++++.|+++.+||..++.+...+........ +.|.
T Consensus 249 ~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred eEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 677788999999999754 45677888999999999999999999999999999999988877655433322212 2232
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+...|++++.|+.++++.+.. ..|...+. +|...++++.|+|.+.+|+++++|++++||++....+...+.+|.
T Consensus 328 -~~~~F~ts~td~~i~V~kv~~--~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 328 -SNDEFATSSTDGCIHVCKVGE--DRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred -cCceEeecCCCceEEEEEecC--CCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 346789999999999999864 34554443 366788999999999999999999999999998888888777754
Q ss_pred cCCCCceEEEEcCCC---------cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeE
Q psy16316 238 NNKGCPLEASFTPDS---------KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLA 306 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~---------~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~ 306 (335)
. .+..+.|+|+| ..+++++.|++|++||+..+..++.+ +.|..+|.+|+|+|+|.++|+|+ +.+.
T Consensus 402 k---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 402 K---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred c---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 4 35668888875 48999999999999999999999887 56999999999999999999996 6799
Q ss_pred Eecc
Q psy16316 307 FWIP 310 (335)
Q Consensus 307 ~w~~ 310 (335)
+|..
T Consensus 478 iws~ 481 (524)
T KOG0273|consen 478 IWST 481 (524)
T ss_pred eccc
Confidence 9975
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=246.74 Aligned_cols=287 Identities=19% Similarity=0.316 Sum_probs=239.5
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
|......|++.+|++.-.+||+|-..|...+|++..-..+..+......+..++|...++-..+.++ .-+.+.+|+..+
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~-klgQLlVweWqs 339 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS-KLGQLLVWEWQS 339 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC-ccceEEEEEeec
Confidence 4445588999999999999999999999999999988888888777788999998876665444433 367899999999
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
...+...+||...+++++++|||++++||+.||.||+||..++.|...+ .+...+..+.|...|+.+++++-||+|+.|
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 9999999999999999999999999999999999999999999998776 345556778899999999999999999999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe-EEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI-IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
|+...+ ... .+....+.+..+++.+|.|..+.+|+.|.. |.+|++.+|+.+..+.+ |.++|.+++|+|++..
T Consensus 420 DlkRYr--NfR--Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG---HEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 420 DLKRYR--NFR--TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG---HEGPVSGLSFSPDGSL 492 (893)
T ss_pred eecccc--eee--eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC---CCCcceeeEEccccCe
Confidence 997643 122 233344566788999999999999988864 99999999999888877 4567788999999999
Q ss_pred EEEEeCCCcEEEEECCCCe-eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccccc
Q psy16316 255 VISGSTDGRIHIWNAEKGF-KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYL 313 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~ 313 (335)
||+||.|.+|++||+-... ....+ .+..-+..++|+|+|.-+|.+. +.|.+|+..-.
T Consensus 493 LaS~SWDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred EEeccccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 9999999999999986442 33334 3566889999999999988775 67899975433
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=249.06 Aligned_cols=282 Identities=21% Similarity=0.332 Sum_probs=234.8
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.|..|+++|.+|.|+|...+++++=..|++.|||.+++...+.+....-++..+.|-+-.+ .+..++.|..||
T Consensus 3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~Ir 80 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN--WIVTGSDDMQIR 80 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc--eEEEecCCceEE
Confidence 455677888999999999999999999999999999999999999888888888888888876544 456677899999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-CceeEE-EecCCcceEEECC-CCCEEEEEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-NCQGIM-HVSGSRPIAAFDP-EGLIFGVGV 167 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 167 (335)
+|+..+.+.++.|++|.+-|.+++.||..++++|+|.|-+|++||.... .|..++ .+.+-+..++|.| |.+.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999999999999999999999754 333333 1222233456666 779999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc--CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
-|++||+|.+.+. .+...+ ..+...++++.+-+ |.++|++|++|.++++||-.+..|++++.+|.+. +..
T Consensus 161 LDrTVKVWslgs~--~~nfTl---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N---vs~ 232 (794)
T KOG0276|consen 161 LDRTVKVWSLGSP--HPNFTL---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN---VSF 232 (794)
T ss_pred ccccEEEEEcCCC--CCceee---eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc---ceE
Confidence 9999999999753 233333 25566788899865 4479999999999999999999999999987655 556
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+.|+|.-..++|||+||+++||+..+-.....+.. -.++|++++-.+....++.|..
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCeEEEecc
Confidence 89999999999999999999999887766666643 4579999999888887887753
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=222.43 Aligned_cols=277 Identities=18% Similarity=0.278 Sum_probs=224.7
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--eeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+++|...|.+|+|+.+|..||+|+.|+++++|+++...... ...+|...+..++|.+... ..+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEE
Confidence 6688999999999999999999999999999999998774433 3356777788888877543 345566679999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
|+..++++.....-.+.+ -+.|+|+|++++.++.|..|.+.|.++.+......+.....-+.|+.++.+|..-...|+|
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 999999998887555555 5789999999999999999999999987765544444333445666777777666566899
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
.|....+. .|... ...+....-++.|+|+|++||+|+.|..+.+||+...-|++.+.. ..-+|..++||.||
T Consensus 172 ~ILsypsL--kpv~s---i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR---ldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 172 EILSYPSL--KPVQS---IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR---LDWPVRTLSFSHDG 243 (313)
T ss_pred EEEecccc--ccccc---cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc---ccCceEEEEeccCc
Confidence 88776543 23322 233445567899999999999999999999999999988887754 44567889999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
++||+||+|-.|-|=++++|.++..++ +.++-..|+|||+.++||.++.
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred ceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEec
Confidence 999999999999999999999998774 6789999999999999998864
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=252.34 Aligned_cols=296 Identities=18% Similarity=0.255 Sum_probs=236.0
Q ss_pred cceeeecc-CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 12 KVAKLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 12 ~~~~~~~~-h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
++++.++. |++||..++|+|.|.+||+||.|+.++|||+..+.+...+.+|...+..+.|.+.....+++++..|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 45567777 99999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEEcCCC-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE------------------------
Q psy16316 91 YLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM------------------------ 145 (335)
Q Consensus 91 ~~~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~------------------------ 145 (335)
+||+... .++.+++.|...|+++++.+++..++++|.|..+.+||+.+.++..+.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 9999855 457888999999999999999999999999999999998654322111
Q ss_pred EecCC--c----------------c-eEEE------------------------------------------------C-
Q psy16316 146 HVSGS--R----------------P-IAAF------------------------------------------------D- 157 (335)
Q Consensus 146 ~~~~~--~----------------~-~~~~------------------------------------------------~- 157 (335)
..++. . + .-.+ .
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 00000 0 0 0000 0
Q ss_pred ----------------------------------------CCCCEEEEEEcCCeEEEEEccCCCCC--------------
Q psy16316 158 ----------------------------------------PEGLIFGVGVNSDTIKLYDVRSFDKG-------------- 183 (335)
Q Consensus 158 ----------------------------------------~~~~~~~~~~~d~~v~iwd~~~~~~~-------------- 183 (335)
.+|.++++|+.|+++++|.++.....
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 12345667777777777755220000
Q ss_pred ----------c---------e-------------eeEEe-----ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy16316 184 ----------P---------F-------------SNFKF-----AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 184 ----------~---------~-------------~~~~~-----~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+ . .+..+ ..-|..++++++++|+.+.+++++.|++.++|+++.
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC
Confidence 0 0 00000 011334678999999999999999999999999998
Q ss_pred CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece--
Q psy16316 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN-- 304 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~-- 304 (335)
......+.+| ..-+.++.|+|..+.+||+|.|++|+||.+++...+.+++ +|+..|..++|-.++++|+|++.+
T Consensus 495 ~~l~~vLsGH---~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 495 LRLLGVLSGH---TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ceEEEEeeCC---ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCc
Confidence 8888888765 4557889999999999999999999999999998888885 699999999999999999999754
Q ss_pred eEEeccc
Q psy16316 305 LAFWIPT 311 (335)
Q Consensus 305 ~~~w~~~ 311 (335)
+++|+..
T Consensus 571 iKlWnik 577 (775)
T KOG0319|consen 571 IKLWNIK 577 (775)
T ss_pred EEEEecc
Confidence 8999753
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=255.58 Aligned_cols=252 Identities=23% Similarity=0.372 Sum_probs=198.5
Q ss_pred eeeec-cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--------------------------------------
Q psy16316 14 AKLFR-ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-------------------------------------- 54 (335)
Q Consensus 14 ~~~~~-~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-------------------------------------- 54 (335)
.+.+. +|.++|.++.||+||+||||||.||.|+||.+...+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34566 899999999999999999999999999999875400
Q ss_pred ----------------------ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEE
Q psy16316 55 ----------------------NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112 (335)
Q Consensus 55 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~ 112 (335)
....+.+|...|..+.|+. ..++.+++.|.+||+|++....++++|. |.+.|+|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 0001223444455555543 2356788899999999999999999997 9999999
Q ss_pred EEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec
Q psy16316 113 LCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 113 ~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
++|+| |+++++|||-|+.||||++...+...-......++.+++.|+|+..++|+-+|.+++|+.....-.....+...
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999 56899999999999999998877665555667788899999999999999999999999875321111111111
Q ss_pred cC--C-CccceEEEEccCCC-EEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 192 AE--K-ECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 192 ~~--~-~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
.. . ...++++.|.|... .++++++|..|||||.+..+.+..++++.+.... ....|++||++|++|++|..|++|
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEE
Confidence 11 1 11478999987654 4888889999999999888888888887765543 467899999999999999999999
Q ss_pred ECC
Q psy16316 268 NAE 270 (335)
Q Consensus 268 d~~ 270 (335)
+..
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 974
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=254.48 Aligned_cols=252 Identities=25% Similarity=0.412 Sum_probs=212.2
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEc-cCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDC-ELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+.+.+.+|...|+.++|+|+|+++++|+.|++|+|||+ +.+.+++++.+|...+.+++|.+.+ .++++++.|++||+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRI 272 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEE
Confidence 45666899999999999999999999999999999999 5668889999999999999999987 57788889999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC--ceeEEEe-cC--CcceEEECCCCCEEEEE
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN--CQGIMHV-SG--SRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~--~~~~~~~-~~--~~~~~~~~~~~~~~~~~ 166 (335)
||++++++.+.+++|.+.|++++|+++++.|++++.|+.|++||+.++. +...+.. .. ....+.|+|++.+++++
T Consensus 273 Wd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 273 WDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred EeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999988 4443322 11 35678899999999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
+.|+++++||++..... ............+....+++.+.++++++.|+.|++||+.++..+..+.+|. ...+..+
T Consensus 353 ~~d~~~~~w~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~~~~~ 428 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSV--GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAAVSDL 428 (456)
T ss_pred cCCCeEEEEEccCCcce--eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC--CCceecc
Confidence 99999999999864321 1121111111233445568899999999999999999999988887777763 4567789
Q ss_pred EEcCCCcEEEEEe--CCCcEEEEECC
Q psy16316 247 SFTPDSKYVISGS--TDGRIHIWNAE 270 (335)
Q Consensus 247 ~~sp~~~~l~tgs--~dg~v~iwd~~ 270 (335)
+++|...++++++ .|+.+++|...
T Consensus 429 ~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 429 SSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999 78899999753
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=224.60 Aligned_cols=276 Identities=17% Similarity=0.219 Sum_probs=211.0
Q ss_pred ccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCC-c-ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 18 RENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELG-T-NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 18 ~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
....+.|.+|+||| ...+++.||+|++||+|+++.. . ..+....+..++..++|+.++. .+++++.|+.+++||+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 35788999999999 5567779999999999999873 2 2234455778899999998764 4566778999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCC--EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
.+++. ..+..|.++|.++.|-+..+ +|+|||+|++||.||+++...+..+.+.. .+.+.+-...+++++..++.|
T Consensus 102 ~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv~~pm~vVata~r~i 178 (347)
T KOG0647|consen 102 ASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADVLYPMAVVATAERHI 178 (347)
T ss_pred cCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhccCceeEEEecCCcE
Confidence 99964 45667999999999988665 89999999999999999877666655544 344455556678899999999
Q ss_pred EEEEccCCCCCceeeEEe-ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC--eeeeeeccccc------CCCCc
Q psy16316 173 KLYDVRSFDKGPFSNFKF-AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG--QCLQTLAGFLN------NKGCP 243 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~------~~~~v 243 (335)
.+|+++... ..++. .......+++++..++..-.+.|+-.|.+.+..+..+ +.--.++.|.. ....|
T Consensus 179 ~vynL~n~~----te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 179 AVYNLENPP----TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EEEEcCCCc----chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 999997522 11111 1112335578888888887788888888888777654 22223333321 23456
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
.+++|+|....|+|+|.||++.+||.....++...+ .|+.+|++.+|+.+|.++|.+.+
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEEee
Confidence 678999999999999999999999988777776654 59999999999999999999865
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=240.86 Aligned_cols=283 Identities=20% Similarity=0.304 Sum_probs=228.7
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+...++..+.|.+++...+ +++.|+.+++|+
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~i--Aas~d~~~r~Wn 247 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVI--AASNDKNLRLWN 247 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEE--eecCCCceeeee
Confidence 467899999999999998999999999999999997776 4556677777889898887766544 445799999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
+...+...++.||++.|+++.|......+++|+.|.+|+.||+....|.....+......+... ...+++|-.|++|+
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999999887777999999999999999998887655433322222222 55678888999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc-CCCCceEEEEcCCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN-NKGCPLEASFTPDS 252 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~ 252 (335)
+||.++... ... .+....++++..++++..+++.+.|.++.+.|+++.+....+..... .......+.|||++
T Consensus 326 fwD~Rs~~~--~~s----v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 326 FWDIRSADK--TRS----VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred EEeccCCce--eeE----eecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 999987432 111 12233678999999999999999999999999998876665543221 12346779999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCC-CeEEEEeCCCCcEEEeeec--eeEEe
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPS-PVQTIQFNPKFNMMASACT--NLAFW 308 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~~~s~~~--~~~~w 308 (335)
.|+|+||.||.|+||++.++.....+...+.. .|++++|+|.|..+++++. .+.+|
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999887777655554 7999999999999999985 46666
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=238.81 Aligned_cols=296 Identities=19% Similarity=0.319 Sum_probs=226.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc----eeeee-cccccceEEEEecCCCeeEEeecC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN----KRTVF-SKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
++.-.-.|++|+..|+++++.|.|.+|+|||-|.+|++||.+.-.. -+.+. ...+.+..++|++.++..+++++.
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3444567899999999999999999999999999999999864321 12221 234678999999988887777763
Q ss_pred CCCeEEEEEcCCCceEe------------eecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCce-eEEEecC-
Q psy16316 85 IDDTVRYLSLHDNKYIR------------YFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQ-GIMHVSG- 149 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~------------~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~-~~~~~~~- 149 (335)
...+++|-+.-.... ..+||...++|.+|+|.. +.++|++.||++|+||+...+.+ .++....
T Consensus 236 --aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 236 --AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred --cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 566777765443322 236899999999999975 68999999999999999765433 3332211
Q ss_pred -----CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC
Q psy16316 150 -----SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224 (335)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~ 224 (335)
.....+|+++++++|+|..||.|.+|+.++....+....+..+.....+++++||+||++|++-+.|.++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 234578999999999999999999999887666666666666656668899999999999999999999999999
Q ss_pred CCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeC------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE
Q psy16316 225 YNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGST------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 297 (335)
++.+ ++....+..+ ...-..++|||+.++|+||.. .|++.+||..+-.....++. ....|..+.|||.-++
T Consensus 394 rq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQ 471 (641)
T ss_pred cccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhh
Confidence 9864 3333333322 223456899999999999873 46799999888777777765 3678899999999776
Q ss_pred EEeee--ceeEEec
Q psy16316 298 MASAC--TNLAFWI 309 (335)
Q Consensus 298 ~~s~~--~~~~~w~ 309 (335)
+..++ |++++|.
T Consensus 472 i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 472 IFAGSGDGTAHVYY 485 (641)
T ss_pred eeeecCCCceEEEE
Confidence 66554 5566664
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=242.57 Aligned_cols=252 Identities=18% Similarity=0.305 Sum_probs=208.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.|.....+.+|..+|+++.|+++|.+++||+.||.||+|+............|...|..++|++.. ..+++++.|++|
T Consensus 127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~i 204 (464)
T KOG0284|consen 127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTI 204 (464)
T ss_pred eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeE
Confidence 355556678999999999999999999999999999999986554433333445889999999843 456777889999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
++||....+....+.||...|.|++|||...++++||.|+.|++||.+++.|+...+ +...+..+.|+++++++++++.
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 999999998888999999999999999999999999999999999999999987653 4455566789999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
|..++++|+|.+.. +.....+...+++++|+|=. ..|.+++.|+.|..|.+...+.+..+. ..|...|.+++
T Consensus 285 D~~~kv~DiR~mkE-----l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~--~AHd~~iwsl~ 357 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKE-----LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP--PAHDGEIWSLA 357 (464)
T ss_pred CceEEEEehhHhHH-----HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC--cccccceeeee
Confidence 99999999996432 11223456678899999954 566778899999999988554444432 34667899999
Q ss_pred EcCCCcEEEEEeCCCcEEEEECC
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
|+|=|.+|++|+.|.++++|.-.
T Consensus 358 ~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccceeEeecCCCcceeeeccC
Confidence 99999999999999999999754
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=247.49 Aligned_cols=283 Identities=19% Similarity=0.341 Sum_probs=239.4
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.+.||+..|+++.||.+...++||+. +.+++|+..+.+|++++... -+-+..|.|... .+..|...|.+.++|+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~--~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDR--YIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCc--eEEEeccCCceEEEEee
Confidence 46799999999999999998888865 58999999999999987654 344556666544 34456678999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-----CCc---e-----eEEEecCCcceEEECCCCCE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-----PNC---Q-----GIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-----~~~---~-----~~~~~~~~~~~~~~~~~~~~ 162 (335)
+...+.++++|.+.|++++.+|++..++|||.|++|++||... +.. . ..+.....+-++.++|++++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 9999999999999999999999999999999999999999742 111 1 22334455667889999999
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
++++--|++|++|-+.++ .-+-...+|.-++.+|.+|||++.+++++.|+.|++|-+.=|.|.+.+.+| ...
T Consensus 523 LaVsLLdnTVkVyflDtl-----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH---dDS 594 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTL-----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH---DDS 594 (888)
T ss_pred EEEEeccCeEEEEEecce-----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc---cCc
Confidence 999999999999988763 223345677889999999999999999999999999999999999988764 456
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEecccc
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFWIPTY 312 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~~~ 312 (335)
|.++.|-|...++.|+|.|+.|+-||..+-..+..++ +|...|++++.+|+|.+++|++. +|++|+-+-
T Consensus 595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeEEEEcccceeEEEecCcceEEeechhhhhhheeec-cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 7889999999999999999999999998888888886 58899999999999999999975 699997643
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=241.48 Aligned_cols=290 Identities=18% Similarity=0.301 Sum_probs=241.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecC-CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSE-DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.|.+++.+.--+.+|..++|+..|.++|-|+. =|.+-||+.++..-+....+|-..+.+++++|+++ ++++++.|+.
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq--~iaTG~eDgK 373 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ--LIATGAEDGK 373 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc--EEEeccCCCc
Confidence 46677788888889999999999999998875 48999999999888878888889999999998765 6778889999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc--ceEEECCCCCEEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR--PIAAFDPEGLIFGVG 166 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (335)
|++||..++-|+.+|..|+..|+.+.|+..++.++|.|-||+||.||+...++-+.+...... .+++.+|.|.++.+|
T Consensus 374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence 999999999999999999999999999999999999999999999999998888777655544 356788889999888
Q ss_pred EcCC-eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-eeeeeecccccCCCCce
Q psy16316 167 VNSD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~ 244 (335)
+.|. .|++|++.+++ .+....+|+.++.+++|+|++..|++++-|++||+||+... ..+.++. ....++
T Consensus 454 ~~d~F~IfvWS~qTGq-----llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdvl 524 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQ-----LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDVL 524 (893)
T ss_pred ccceEEEEEEEeecCe-----eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----ecccee
Confidence 8775 79999998743 23345678889999999999999999999999999998754 2334443 345678
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-------------------CCCCCCeEEEEeCCCCcEEEeee--c
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-------------------ADHPSPVQTIQFNPKFNMMASAC--T 303 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-------------------~~h~~~v~~v~~sp~~~~~~s~~--~ 303 (335)
.++|+|+|+.||++..||.|.+||...+.+...++ ..-..+.+.+.+++||+.+.+|+ .
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 99999999999999999999999987655442221 11235789999999999988886 4
Q ss_pred eeEEecc
Q psy16316 304 NLAFWIP 310 (335)
Q Consensus 304 ~~~~w~~ 310 (335)
+|-+|..
T Consensus 605 ~iCiY~v 611 (893)
T KOG0291|consen 605 SICIYDV 611 (893)
T ss_pred cEEEEEC
Confidence 5666643
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=229.06 Aligned_cols=267 Identities=19% Similarity=0.296 Sum_probs=222.7
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
+.-|++++|+.+|..||+|+.||.+++|+. .|..+.++..|+.+|..+.|... +..+++++.|+++.+||..++...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCceEE
Confidence 467999999999999999999999999996 46667777788999999998754 446778889999999999999999
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccC
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 179 (335)
+.++-|..+-..+.|-.+ ..+++++.|+.|++.-+........+ .+.+.+.++.|+|.+.+++++++|++++||....
T Consensus 312 q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 999999988777888654 57999999999999999877766544 5666778899999999999999999999999754
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCC---------EEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGK---------YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
.. .. .....+...+..+.|+|.|+ .+++++.|.+|++||+..+.++..+.. |..+|.+++|+|
T Consensus 391 ~~--~~---~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~ 462 (524)
T KOG0273|consen 391 SN--SV---HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSP 462 (524)
T ss_pred Cc--ch---hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecC
Confidence 21 11 12233445566788888764 688899999999999999999888754 566789999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+|+++|+|+.||.|.+|+..++...+... ..+-|..|.|+-+|..+..+
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred CCcEEEecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 99999999999999999999988777663 45679999999999877655
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=244.07 Aligned_cols=290 Identities=20% Similarity=0.326 Sum_probs=239.3
Q ss_pred hcccceeeeccCCccEEEEEEC-CCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s-~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
..+++.+.+-|-.++|..+.|- |+.++||.++..+.+|+|++.+..+. -+.+|...+.++... ..+.++++++.|+
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~--~~g~llat~sKD~ 387 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW--SSGDLLATGSKDK 387 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec--ccCcEEEEecCCc
Confidence 3456777888988999998886 78899999999999999998877765 677888888887722 3346888999999
Q ss_pred eEEEEEcCCC----ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCce---eEE-------EecCCcc
Q psy16316 88 TVRYLSLHDN----KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQ---GIM-------HVSGSRP 152 (335)
Q Consensus 88 ~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~---~~~-------~~~~~~~ 152 (335)
++++|.++.+ -++....||++.|.+++++.-+ ..|+|+|.|.++++|++...+.. ..+ .+...+.
T Consensus 388 svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 9999987433 2455678999999999997654 68999999999999999762110 111 2334567
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
+++++|...++++|+.|++.+||++... .-.....+|...+-++.|+|....+++++.|++|+||.+.++.|+++
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCc-----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence 8899999999999999999999999732 12233445666778999999999999999999999999999999999
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece--eEEecc
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN--LAFWIP 310 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~--~~~w~~ 310 (335)
+.|| ...|..+.|--+++.|++++.||-|++||+.++..+..++ .|.+.||.++-+|...++++|+++ +.+|.-
T Consensus 543 ~eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 543 FEGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ecCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 9875 4568889999999999999999999999999998888886 499999999999999999988755 677854
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=231.75 Aligned_cols=271 Identities=19% Similarity=0.321 Sum_probs=210.0
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
...+.|.|+.+. ...++||..|.||+|||..+-.+.+.+.+|.+.|-++.|.. .++.+++.|.+|++||+.+++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc----eEEEecCCCceEEEEeccCCc
Confidence 356678999764 45789999999999999999999999999999999988754 277889999999999999999
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
+++++-+|...|..+.|+. .+++|+|.|.++++||+.+...+...+ .++...+-..+-+.+++++++.|+++++|+
T Consensus 269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence 9999999999999999975 599999999999999998766332211 112222223445667999999999999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
+.+.+ .......+.-.+.++. ..++++++|+.|.+|++||++.|.|++.+++|..- +.++.| |.+.++
T Consensus 347 ~st~e-----fvRtl~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL---vRciRF--d~krIV 414 (499)
T KOG0281|consen 347 TSTCE-----FVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL---VRCIRF--DNKRIV 414 (499)
T ss_pred cccee-----eehhhhcccccceehh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHh---hhheee--cCceee
Confidence 87632 1222333444444444 46889999999999999999999999999886554 445667 467899
Q ss_pred EEeCCCcEEEEECCCCeeEEE--------eCCCCCCCeEEEEeCCCCcEEEee-eceeEEecc
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCV--------LDADHPSPVQTIQFNPKFNMMASA-CTNLAFWIP 310 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~--------~~~~h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~ 310 (335)
+|+.||+|++||+..+..... ....|++.|..+.|..- +++++. +.+|.+|..
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWdF 476 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWDF 476 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEEEEc
Confidence 999999999999986543311 12358999999999753 333333 467999975
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=220.69 Aligned_cols=289 Identities=12% Similarity=0.200 Sum_probs=224.1
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+..-.+.||.+.|+++.|+.||.+||||+.+|.|+||+.+++.....+......+.-+.|+| ...+++.++.|+.+-+
T Consensus 97 e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 97 EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWM 174 (399)
T ss_pred cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc--cccEEEeecCCCcEEE
Confidence 34556889999999999999999999999999999999999998888775566677778877 4556677778999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d 169 (335)
|.+.++...+.+.||+.++++-.|.|+|+.++++..||+|++||..+++....+.. ....+.+.+...+..+..|..+
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 99999999999999999999999999999999999999999999999877655532 1223556666667777777777
Q ss_pred CeEEEEEccCCCCCcee---eEEeccCCCcc---ceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 170 DTIKLYDVRSFDKGPFS---NFKFAAEKECD---WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~---~~~~~~~~~~~---~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
+.+++.+..+..-.... ........... +..+.++..=++.|+|+-||+|.|||+.+.+. +....|...|
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----R~~c~he~~V 330 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----RHICEHEDGV 330 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh----heeccCCCce
Confidence 76666554332100000 00001111122 23345555666788999999999999986543 2223355668
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEe
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFW 308 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w 308 (335)
+.+.|-+ ..+|++++.||.|+.||..+|.....+. +|...|.+.+.+|+.+++++++. ..+++
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 8999999 7899999999999999999999988885 69999999999999999998874 45554
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=222.02 Aligned_cols=279 Identities=17% Similarity=0.310 Sum_probs=214.3
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEec-CCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
-|.+.|.+|... +++++||+.||++++||. .|++..++.+|..++..+++.. +.....+++++.|.++++|-.+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 589999999877 789999999999999997 5888899999999999888754 344457788999999999988766
Q ss_pred ce----EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-----------------------ceeEEE---e
Q psy16316 98 KY----IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-----------------------CQGIMH---V 147 (335)
Q Consensus 98 ~~----~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-----------------------~~~~~~---~ 147 (335)
.. ++.-+||...|-+++..+++..++|||+|.+|++|+..+.. ...+.. +
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 43 23345999999999999999999999999999999932110 000111 1
Q ss_pred cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy16316 148 SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG 227 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~ 227 (335)
...+..+.|++ ...+.+++.|++|+.||+..... ...+ .....+.++..+|..++|++|+.|+.+++||.+++
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--~~~~----~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--KSTL----TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccc--eeee----ecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 22333455666 56777889999999999987432 1111 12335678999999999999999999999999987
Q ss_pred eeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCe-eEEEeCCCCCCCeEEEEeCCCCcEEEeeece-
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGF-KVCVLDADHPSPVQTIQFNPKFNMMASACTN- 304 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~- 304 (335)
.---....+.+|.+.|.++.|+|... +|++|+.|+++++||+.... .+..+ .+|.+.|.++.|+ ++.++++|+.+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEeccCcc
Confidence 53222233455667889999999765 69999999999999998765 55556 4699999999998 45678888754
Q ss_pred -eEEec
Q psy16316 305 -LAFWI 309 (335)
Q Consensus 305 -~~~w~ 309 (335)
++|..
T Consensus 411 ~l~i~~ 416 (423)
T KOG0313|consen 411 KLRIFK 416 (423)
T ss_pred eEEEec
Confidence 55553
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=216.00 Aligned_cols=247 Identities=18% Similarity=0.306 Sum_probs=206.0
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
++++|.++|..+.|.+|++.++|+|.|++++.||.++|++.+....|..-++.+. .......++.+++.|+++++||++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeec
Confidence 5679999999999999999999999999999999999999988888887777777 445566788999999999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
....+++++ .+-.++++.|..++..+.+|+-|+.|++||++...+..+.. +...+.-+..+++|..+.+-+.|.++++
T Consensus 164 ~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 164 KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEE
Confidence 999988886 36789999999999999999999999999999887776552 3445566788999999999999999999
Q ss_pred EEccCCCCCce-eeEEeccCCCc--cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 175 YDVRSFDKGPF-SNFKFAAEKEC--DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 175 wd~~~~~~~~~-~~~~~~~~~~~--~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
||++....... ........+.. .....+|+|+++.+.+++.|+.+++||..+...+..+.+ |.+.|.+++|+|.
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG---h~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG---HYGSVNEVDFHPT 319 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC---cceeEEEeeecCC
Confidence 99987543221 11111111222 234578999999999999999999999988777777766 4566788999999
Q ss_pred CcEEEEEeCCCcEEEE
Q psy16316 252 SKYVISGSTDGRIHIW 267 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iw 267 (335)
..+|.+++.|++|++=
T Consensus 320 e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 320 EPIILSCSSDKTIYLG 335 (338)
T ss_pred CcEEEEeccCceeEee
Confidence 9999999999999874
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=236.32 Aligned_cols=253 Identities=17% Similarity=0.274 Sum_probs=207.4
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+++++|.||..+|..+.|+++|..|.|+|-|+.+++||+++|.+...+. ....+.++.|.|+. ..++..|+.|+.|
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKI 324 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcE
Confidence 467889999999999999999999999999999999999999999876543 34567889998887 4566677789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
+.||+++++.++.|..|-+.|+.+.|-+.+..++|.+.|+++++|+.+.+..+... ......+++..+|.+.+++.-+
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 99999999999999999999999999999999999999999999999887655433 2334567889999999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCcc-ceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECD-WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.|+.+.+|.+...-...... .+....... -..+.|||||.+|++|..+|.+.+||..+-+.+..+..| ...+..+
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK-~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah---~~~ci~v 480 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKK-RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH---DQPCIGV 480 (503)
T ss_pred cCceEEEEecccccccCHhh-hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC---CcceEEE
Confidence 99999999865321110000 000111111 145899999999999999999999999998888887764 4556789
Q ss_pred EEcCC-CcEEEEEeCCCcEEEEE
Q psy16316 247 SFTPD-SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 247 ~~sp~-~~~l~tgs~dg~v~iwd 268 (335)
.|+|. ...+||++.||.|++|+
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 99995 45899999999999996
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=216.42 Aligned_cols=250 Identities=19% Similarity=0.308 Sum_probs=214.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
..-+.+|.||.++|.....+.+..+.||++.|-+.+|||.-+|..+..+ .|+.-|..++|+.+.+. +.+++.+..+|
T Consensus 49 gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~--lltgg~ekllr 125 (334)
T KOG0278|consen 49 GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNY--LLTGGQEKLLR 125 (334)
T ss_pred CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchh--hhccchHHHhh
Confidence 3445789999999999999999999999999999999999999877664 56778999999988764 45677899999
Q ss_pred EEEcCCC-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC
Q psy16316 91 YLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 91 ~~~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
++|++.. .+.+.+.+|.+.|..+-|...++.++|++.|++||+||.+++.....+..+..+..+.++++|.++.++ ..
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~g 204 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YG 204 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cC
Confidence 9999764 456788999999999999999999999999999999999999988888888888889999999998776 45
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
+.|++||..++.. +. ..+.++.+.+..++|+...+++|++|..++.||..+++.+..+ ..+|.++|.++.|+
T Consensus 205 ssV~Fwdaksf~~--lK----s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 205 SSVKFWDAKSFGL--LK----SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFS 276 (334)
T ss_pred ceeEEeccccccc--ee----eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEEC
Confidence 7999999987532 22 2344677788999999999999999999999999999876664 13466778899999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCC
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
|||...|+||+||+|++|.+..+
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceeeccCCCceEEEEEecCC
Confidence 99999999999999999998654
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=215.41 Aligned_cols=290 Identities=16% Similarity=0.250 Sum_probs=231.7
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.-..+|.+|++.|++++.+|+.+++||||.|....||+..+++....+.+|+..|.++.|++++ .+++++..++.+++
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEEE
Confidence 3457899999999999999999999999999999999999999888999999999999999865 47889999999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
|...++.....+-.--..+..+.|||.+..|+.|+.||.+-+|.+.++....++ .+.....+-.|.|+|+.++++..|+
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 999999887777656688999999999999999999999999999885444444 3334445667999999999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc--------cccCCCC
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG--------FLNNKGC 242 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~~~~ 242 (335)
+|++||+.+. .|......... ....++.++..+..++.+..++.+.+.+.-+|+.+.-..+ +.....+
T Consensus 213 ti~~Wn~ktg--~p~~~~~~~e~--~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 213 TIIVWNPKTG--QPLHKITQAEG--LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred eEEEEecCCC--ceeEEeccccc--CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999863 34444332222 2235678888888888888888888888777776544431 1122334
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+..+.++..=++.|+|+-||+|.|||.........+ .|+.+|..+.|-+ ..++++++ +.+++|..
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 555666666788999999999999999876655544 5899999999998 56666665 56777864
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=221.69 Aligned_cols=284 Identities=20% Similarity=0.320 Sum_probs=232.3
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee--------ecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV--------FSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
|....+-|..|||||+||+|||.||-|-+||..+|+..+.+ .-+..+|.++.|+.+.+ ++++++.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 55667889999999999999999999999999999765433 22456788888887655 678999999999
Q ss_pred EEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEEEc
Q psy16316 91 YLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 91 ~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+|.+.+|.+++.|. +|+..|+|+.|+.|+..++|+|.|.++|+--++++++...+.. ..-+.-+.|.++|..+++++.
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99999999999886 9999999999999999999999999999999999999876632 223445679999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
|++|++|+..+.+. ...++.. .....++.+-.-|. .+.++++....++++.++. |+.++.+..-....+...+++
T Consensus 369 DgtvkvW~~KtteC--~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTEC--LSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhh--hhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 99999999876432 2233322 23345566665554 4567788888899999875 667787776566667788899
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
.||.|.++.+.++|+.++.|+..+|....++. .|+.-|-.++.||-.+++|+=+ +.+++|-
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeee-cccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999998888875 5888888999999999998664 5677774
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=212.02 Aligned_cols=275 Identities=19% Similarity=0.268 Sum_probs=212.5
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
...+.|+.+.|+|.++.|+.+|+||++++||+... .++..+.+..++..++|.... -..+++.|+.|+.+|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFADES---TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhheecCCceeeeeccCCc---eEEEeccCceEEEEEecCCc
Confidence 45788999999999999999999999999999877 445556788899999998743 34567789999999999887
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
..+ +..|..+|.|+.+.+....++|||+|++|++||.+...+...... ...+.+++-.++.+++|+.+..+.+||+|
T Consensus 87 ~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 87 EDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEeccCCEEEEeecCceEEEEEcc
Confidence 544 556999999999999889999999999999999997554443322 23566777889999999999999999999
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC----------eeeeeecccccCCCCceEEEE
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG----------QCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~~~~~v~~~~~ 248 (335)
.+... .... .....-++.++++-|++.=.++++-+|.|.+=.++.. +|.+....-..-..+|.+++|
T Consensus 164 n~~~~-~q~r--eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 164 NLDEP-FQRR--ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred cccch-hhhc--cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 75421 1100 0111234578999998777788888887776554433 233322222222346778999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
||-.+.||||+.||.|.+||..+.+++..+.. .+..|..++|+-+|..||.++..
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEEEech
Confidence 99999999999999999999988777776643 56789999999999999999763
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=237.82 Aligned_cols=249 Identities=20% Similarity=0.313 Sum_probs=204.8
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+...|.+|.|+|+.+.|+|++.+|+|||+|.+|+||+..+..|+.++.+|-.-|..+.|++ +...+.+++.|.+||+|
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIW 120 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC--CCceEEEccCCCeEEEE
Confidence 4456789999999999999999999999999999999999999999999999999998876 45577888999999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc----------------e---------eEE--
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC----------------Q---------GIM-- 145 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~----------------~---------~~~-- 145 (335)
|-.+++++..+.||+.-|.|.+|+|...+++|+|-|-+||+||+..-+. . .++
T Consensus 121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 9999999999999999999999999999999999999999999853110 0 000
Q ss_pred ---EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 146 ---HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 146 ---~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
.+...+..++|+|.-.++++|++|+.||+|.+..... + ......++-.++.++-|+|..+.+++.+.|++|++|
T Consensus 201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--W-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--W-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccccccceEEecCCcceEEecCCcceeeEEEeccccc--e-eehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 1122345678999999999999999999999875322 1 122234555678899999999999999999999999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
|+...+.++.++. .......++-+|..+++|.|.+.| +.+|.++
T Consensus 278 Dm~kRt~v~tfrr---endRFW~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRR---ENDRFWILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred ecccccceeeeec---cCCeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence 9998888877753 234456789999999988887655 5566544
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=214.74 Aligned_cols=292 Identities=22% Similarity=0.359 Sum_probs=234.3
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC------------C------cceeeeecccccceEEEEecCCC
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL------------G------TNKRTVFSKKYGVDLIRFTHAKQ 76 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~------------~------~~~~~~~~~~~~~~~~~~~~~~~ 76 (335)
..+..|..++++.+|+|||.++||||.|..|+|.|++. + ..+++++.|...|+.+.|.|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45789999999999999999999999999999999871 1 2356778888899999998754
Q ss_pred eeEEeecCCCCeEEEEEcCCCc---eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----EecC
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNK---YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSG 149 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~ 149 (335)
.++++++.|++++++|+.... ..++++ ...+|.+++|+|.|.+|+.|..-.++|++|+++.+|.... ++.+
T Consensus 185 -~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 185 -TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 477889999999999997543 333443 3578999999999999999999999999999998875432 3445
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
.+..+.+++.++++++|+.||.|++||--+.+ ....+...+ ....+++..|..+++|+++++.|..+++|.+.++++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNR--CVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHH--HHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 66778899999999999999999999976532 222332222 234678899999999999999999999999999999
Q ss_pred eeeeccccc--CCCCceEEEEcCCCcEEEEEeC-CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--e
Q psy16316 230 LQTLAGFLN--NKGCPLEASFTPDSKYVISGST-DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--N 304 (335)
Q Consensus 230 ~~~~~~~~~--~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~ 304 (335)
+.++.+... ....-....|..+..|++.-.+ .+.+.-||..++.+...+..+|.+++..+..||.++-+.+++. .
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 988875421 1111234567777778777665 4568999999998888888899999999999999999998875 4
Q ss_pred eEEecccc
Q psy16316 305 LAFWIPTY 312 (335)
Q Consensus 305 ~~~w~~~~ 312 (335)
+++|..+.
T Consensus 420 aRFWyrr~ 427 (430)
T KOG0640|consen 420 ARFWYRRV 427 (430)
T ss_pred eeeeeecc
Confidence 89996543
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=223.69 Aligned_cols=255 Identities=21% Similarity=0.324 Sum_probs=203.7
Q ss_pred ccHHHHh-----cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCe
Q psy16316 3 LTDNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 3 ~~~~~~~-----~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (335)
++|+|++ .+...+.+.||++.|.|+.|.. +.++|||.|.||+|||+++++++.++..|...|-.++|+..
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--- 288 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--- 288 (499)
T ss_pred cccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC---
Confidence 5677773 5777888999999999998765 59999999999999999999999999999999999999753
Q ss_pred eEEeecCCCCeEEEEEcCCCc---eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceE
Q psy16316 78 AIHASTKIDDTVRYLSLHDNK---YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA 154 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~ 154 (335)
++.+++.|.++++||+.... +.+++.||.+.|+.+.|.. ++++|+|.|.+|++|++.+..++..++. +...++
T Consensus 289 -~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIA 364 (499)
T KOG0281|consen 289 -YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIA 364 (499)
T ss_pred -EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhc-ccccce
Confidence 67788899999999997654 3467889999999999965 5999999999999999999888776532 233456
Q ss_pred EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+....++++++|+.|++|++||+..+.. +....+++.-+.++.|+ .+.+++|..||+|++||+.++...+...
T Consensus 365 ClQYr~rlvVSGSSDntIRlwdi~~G~c-----LRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 365 CLQYRDRLVVSGSSDNTIRLWDIECGAC-----LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred ehhccCeEEEecCCCceEEEEeccccHH-----HHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccc
Confidence 6778899999999999999999976321 12334555667788885 6779999999999999998765432221
Q ss_pred ------ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 235 ------GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 235 ------~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
....|.+.+..+-|. ...+++.+.|.+|.|||+.++-..
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 112345566667664 567999999999999999876443
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=216.85 Aligned_cols=268 Identities=20% Similarity=0.328 Sum_probs=220.3
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
..-++..++.||-..|..|++|+-..||.+++.|+.|+.||++..+.++...+|-.+|.+++..|. ..++++++.|.+
T Consensus 181 atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT--ldvl~t~grDst 258 (460)
T KOG0285|consen 181 ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT--LDVLVTGGRDST 258 (460)
T ss_pred ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc--ceeEEecCCcce
Confidence 456677789999999999999999999999999999999999999999999999999999998764 456788889999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
+|+||+++...+.++.||+.+|.++.+.|.+.+++|||.|++||+||++.++.+... ++...+.+++++|....|++++
T Consensus 259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 999999999999999999999999999999999999999999999999998876544 5566667788999999999998
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-----ccCCCC
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-----LNNKGC 242 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~~~~ 242 (335)
.| .++-|++..... +....++...++.++.+.|+ ++++|++.+.+.+||.+++-..+..... ......
T Consensus 339 ~d-nik~w~~p~g~f-----~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEF-----LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred Cc-cceeccCCccch-----hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 86 578898864321 11233455667888888776 5678889999999999988776655322 222345
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
|.+.+|...|..|+||..|.+|++|.-.+... +..|+ +.|.|+
T Consensus 412 I~as~fDktg~rlit~eadKtIk~~keDe~aT----~EthP-----l~w~P~ 454 (460)
T KOG0285|consen 412 IFASCFDKTGSRLITGEADKTIKMYKEDEHAT----EETHP-----LNWKPE 454 (460)
T ss_pred eeEEeecccCceEEeccCCcceEEEecccccC----cccCC-----cCCCCc
Confidence 67889999999999999999999998654321 22354 577775
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=220.71 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=229.4
Q ss_pred eeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
..+.||.+-|.|++=+|.. ..+||||.||.|+|||+...++...+..|.+-|..+++.. ..+.+.+.|.+|+.|.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 4578999999999999988 7899999999999999999999999999999999988876 3455677899999998
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCC-CCEEEEEEcCCe
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPE-GLIFGVGVNSDT 171 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~d~~ 171 (335)
++.. +.+++.+ ...+..++-+..++.++|||++ |.|||.........+..+. .+.++.++|- ..++++|..|+.
T Consensus 136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccCC-cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 8763 6666654 4667788888888899999875 8899998766666555433 3466778874 578888889999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|.+||+|.. .|+....... ..+.++|+|.+-.++++.+|..++.||++..+ +.+..|.+|.+.+.+++|||.
T Consensus 212 IvLyD~R~~--~Pl~KVi~~m----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 212 IVLYDLRQA--SPLKKVILTM----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred eEEEecccC--Cccceeeeec----cccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCC
Confidence 999999863 3444332221 22569999977788899999999999999764 345556778888999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccccccc
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYLSN 315 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~~~ 315 (335)
|+-+++||.|.+|+||....+....+....-...|.+|.||-|.++++||+ +++++|-..+++.
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 999999999999999999887655555444456799999999999999997 6799997655543
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=207.86 Aligned_cols=291 Identities=16% Similarity=0.222 Sum_probs=213.0
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce--eeeec--ccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--RTVFS--KKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+|++|.++|++++|+.||++|||++.|++|+|||+..-++. +.+.. .-...+.++|.|+-...++... ..++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCEEE
Confidence 358899999999999999999999999999999998653221 11111 1124678899988766555444 678999
Q ss_pred EEEcCC---CceE---------eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEEC
Q psy16316 91 YLSLHD---NKYI---------RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFD 157 (335)
Q Consensus 91 ~~~~~~---~~~~---------~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~ 157 (335)
+|.+.. |... ..-+-|.-.|-++-....+.+++|++.|..|.+||++ ++....+..+ ......+++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 997643 2211 1123466777778887788999999999999999998 5655444322 233457899
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeE---EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC----CCeee
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF---KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY----NGQCL 230 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~----~~~~~ 230 (335)
|+|+++++++-.--|++|.+--...+..... -...++...+..++|+++.+.+++.+.||++++||+. .++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999999888999999754333322211 1234566678889999999999999999999999974 22222
Q ss_pred eeeccc----ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec-ee
Q psy16316 231 QTLAGF----LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT-NL 305 (335)
Q Consensus 231 ~~~~~~----~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~-~~ 305 (335)
+.++.. ....+.+..++++|+|+.||.... ..++++..+++.....++..|.+.|.+++|+|+|+++|+++. .+
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~v 396 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYV 396 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceee
Confidence 222211 112344668999999999888764 569999999998877777789999999999999999999863 45
Q ss_pred EEe
Q psy16316 306 AFW 308 (335)
Q Consensus 306 ~~w 308 (335)
++.
T Consensus 397 rv~ 399 (420)
T KOG2096|consen 397 RVI 399 (420)
T ss_pred eee
Confidence 543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=211.00 Aligned_cols=246 Identities=30% Similarity=0.492 Sum_probs=205.3
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+...+.+|...+..+.|+|++++|++++.||.+++||++.++....+..+...+..+.|.+.. .++++++.|+.+++|
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~ 120 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVW 120 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEE
Confidence 446788999999999999999999999999999999999887777777777788889988763 355556579999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEEEcCCe
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
|+.+++....+.+|...|.++.|+|++.++++++.|+.|++||+++++....+.. ......+.++|++..+++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 9999999999999999999999999988999888899999999987776655533 335567889999989999989999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
+++||++... .... ...+...+.+++|+|++.++++++.++.+++|++.+++....+.. +...+.+++|+|+
T Consensus 201 i~i~d~~~~~--~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~ 272 (289)
T cd00200 201 IKLWDLSTGK--CLGT---LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG---HTNSVTSLAWSPD 272 (289)
T ss_pred EEEEECCCCc--eecc---hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc---cCCcEEEEEECCC
Confidence 9999997532 1111 113344678899999988888888799999999998887777763 4456888999999
Q ss_pred CcEEEEEeCCCcEEEEE
Q psy16316 252 SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd 268 (335)
+++|++++.|+.+++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 99999999999999996
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=198.21 Aligned_cols=281 Identities=17% Similarity=0.232 Sum_probs=222.9
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.++||.++++-+.|+.+|.+|.||++|.++.||--.+|+.+.+..+|...|-++....+.. .+.+++.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~--~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc--eeeeccccceeEEEEcC
Confidence 3689999999999999999999999999999999989999999999999999988876655 44566779999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeC-----CCcEEEeecCCC-------CceeEE-EecCCcceEEECCCCCE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-----DKTVRLWDLRSP-------NCQGIM-HVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-----D~~i~vWd~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~ 162 (335)
+|+.+..++ -..+|..+.|+++|++++.+.. -+.|.++|++.. .+...+ ........+.|.|-+..
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 999999887 4678999999999988776543 467899999843 222222 23334456789999999
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+++|..+|.|.+||+++.. ........+...++.+.++|+..++++++.|.+-++||..+.++++++.. ..+
T Consensus 162 ii~Ghe~G~is~~da~~g~----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t----e~P 233 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGK----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT----ERP 233 (327)
T ss_pred EEEecCCCcEEEEEcccCc----eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee----ccc
Confidence 9999999999999998642 11223344556788999999999999999999999999999999988764 355
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEE--CCCC------------eeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeE
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWN--AEKG------------FKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLA 306 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd--~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~ 306 (335)
+.+.+++|...+++.|+.....-+=- ...| +++..+ .+|-+||++|||||+|+..+||+ +.++
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-cccccCcceeEECCCCcccccCCCCceEE
Confidence 67789999888877777543333321 1112 223334 46999999999999999999996 5565
Q ss_pred Ee
Q psy16316 307 FW 308 (335)
Q Consensus 307 ~w 308 (335)
+-
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 54
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=204.65 Aligned_cols=246 Identities=19% Similarity=0.316 Sum_probs=204.9
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.=.|..|.++|++|+. +|.++||||.|-+|+|||+........+..|...++++.|.++.....+.++..||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3457899999999976 57999999999999999999999999999999999999999887766778888999999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
.....++..+++|.+.|+.++.||.+++.+|.+.|+.+|+||+..++...+.........+.|+|.|.+|+.+..+ .|-
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KID 192 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEE
Confidence 9999999999999999999999999999999999999999999999988877777777789999999999888764 788
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE--EcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS--FTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~--~sp~ 251 (335)
+|.+....- ... .+.+..+.++.|. ++.+|++|.+++.|.+||..+..+...+.+|.+. |..+. -.|+
T Consensus 193 i~q~d~A~v--~~~----i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R---VK~i~~~~~~~ 262 (362)
T KOG0294|consen 193 IYQLDNASV--FRE----IENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR---VKDIASYTNPE 262 (362)
T ss_pred EEecccHhH--hhh----hhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhh---eeeeEEEecCC
Confidence 998865321 100 1111223345554 5667889999999999999998888887776543 44454 3678
Q ss_pred CcEEEEEeCCCcEEEEECCCC
Q psy16316 252 SKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~ 272 (335)
+.+|+|+|.||.|++||+...
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEEeccCceEEEEEcccc
Confidence 899999999999999998643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=224.89 Aligned_cols=254 Identities=17% Similarity=0.173 Sum_probs=187.5
Q ss_pred ecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc--------eEeeecCCCCCe
Q psy16316 39 CSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--------YIRYFPGHTKKV 110 (335)
Q Consensus 39 gs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~H~~~V 110 (335)
|+.++.+++|+.........+.+|...|..++|++.. ..++++++.|++|++||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 6789999999987777777788899999999998863 2356778899999999997542 345678999999
Q ss_pred EEEEECCCCCE-EEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEE
Q psy16316 111 NSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189 (335)
Q Consensus 111 ~~~~~~~~~~~-l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~ 189 (335)
.+++|+|++.. |+|++.|++|++||+++++....+.....+..+.|+|+|.++++++.|++|++||+++.. ....+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFH 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEe
Confidence 99999998865 579999999999999988766555445556778899999999999999999999998742 222222
Q ss_pred eccCCC--ccceEEEEccCCCEEEEEeCC----CeEEEEECCC-CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 190 FAAEKE--CDWTGIKFSADGKYILISTNG----SIIRTFDAYN-GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 190 ~~~~~~--~~~~~~~~s~~~~~l~~~~~~----~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
.+.... ..+....|++++.++++++.+ +.|++||+++ .+.+..+. +....+.+......+++.++++|+.|+
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCCCCCEEEEEECCC
Confidence 111110 111223467899999987766 4799999996 44444432 222223222333455688999999999
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
.|++|++..+.....-...+..++..++|.|+..
T Consensus 286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 9999999877543333344678899999999854
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=212.22 Aligned_cols=251 Identities=23% Similarity=0.370 Sum_probs=211.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
+|+.-..|.-|.++|.|+.||.|..+||||+.||.|++|.+++|.|++.+. .|..++.+++|+.++.. +.+++.|.+
T Consensus 252 kYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS~sfD~t 329 (508)
T KOG0275|consen 252 KYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILSASFDQT 329 (508)
T ss_pred hhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcch--hhcccccce
Confidence 466667788899999999999999999999999999999999999998876 68889999999987654 456778999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC----cceEEECCCCCEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS----RPIAAFDPEGLIFG 164 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 164 (335)
+|+..+++|++++.++||...|+...|.++|..++|+|.||+|++|+.++..|...+...+. ..++.+......++
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999877754332 23345555677899
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+|...+++.|.++.. .....+.........+-+...||.|.++.+.+.|+.++.|...+|+..+++..| ...+.
T Consensus 410 VCNrsntv~imn~qG---QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh---EkdvI 483 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQG---QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH---EKDVI 483 (508)
T ss_pred EEcCCCeEEEEeccc---eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc---ccccc
Confidence 999999999998753 122222222222334566789999999999999999999999999988887653 44577
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.++-+|..+.||+=++||.+++|.
T Consensus 484 Gl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 484 GLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccCcccchhhhhcccchhhhcC
Confidence 899999999999999999999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=223.08 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=176.6
Q ss_pred eeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCc-------ceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 15 KLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGT-------NKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
..+.+|++.|.+++|+| ++.+|||||.|++|++||+..+. .+..+.+|...|..++|++... .++++++.|
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~D 147 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGAD 147 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCC
Confidence 35889999999999999 88999999999999999997652 3456677888999999988643 356677789
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cC-CcceEEECCCCCEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SG-SRPIAAFDPEGLIFG 164 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 164 (335)
++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+.. .+ ......|.+++..++
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999998876654422 22 223456777766665
Q ss_pred EEE----cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccC
Q psy16316 165 VGV----NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 165 ~~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
+++ .|++|++||++.... +..... .+....+....|+++++++++++ .|+.|++||+.+++....... ..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~-p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~--~s 302 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMAS-PYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY--SS 302 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCC-ceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec--cC
Confidence 543 478999999986432 222111 12222334467899999998877 599999999999876654422 12
Q ss_pred CCCceEEEEcCC
Q psy16316 240 KGCPLEASFTPD 251 (335)
Q Consensus 240 ~~~v~~~~~sp~ 251 (335)
......++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 234556788875
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=227.34 Aligned_cols=261 Identities=20% Similarity=0.343 Sum_probs=205.6
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..+.||.+.|.++.|..-+.+|++||.|.++++||+.+|.|...+.+|...+.++...+. ...+++.|.+|++|++
T Consensus 243 ~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 243 TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDV 318 (537)
T ss_pred eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc----eEeeccCCceEEEEec
Confidence 448999999999999997889999999999999999999999999999888887776443 4556789999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCC-CEEEEEEcCCeEE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-LIFGVGVNSDTIK 173 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~ 173 (335)
.++.++.++.||.++|+++..+ +.++++|+.|++|++||..+++|...+.. +...+..+..++ ..+.+|+.|++|+
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~~~~~Sgs~D~~Ik 395 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSENRLLSGSLDTTIK 395 (537)
T ss_pred cCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCcceEEeeeeccceE
Confidence 9999999999999999999998 78999999999999999999998876633 222333334444 8899999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
+||++... .....+ ..+...+ -.+...++.|++++.|++|++||..++++.+.+.+. +...+..+++. ..
T Consensus 396 vWdl~~~~-~c~~tl---~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~~ 465 (537)
T KOG0274|consen 396 VWDLRTKR-KCIHTL---QGHTSLV--SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--KE 465 (537)
T ss_pred eecCCchh-hhhhhh---cCCcccc--cccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC--cc
Confidence 99998752 122222 2222222 234557889999999999999999999999999875 33445555554 46
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 254 ~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
.+++++.||++++||+..+.....+-.........+++.
T Consensus 466 ~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~ 504 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPS 504 (537)
T ss_pred eEEEEecCCeeEEEecccCchhhhhhhcccccccccccC
Confidence 799999999999999998876665533233444445543
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=199.13 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=200.8
Q ss_pred EEEEECCC-CCEEEEec-------CCCeEEEEEccCCcceeee--ecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 25 TSIDYSAD-GLLLISCS-------EDDQIVIYDCELGTNKRTV--FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 25 ~~v~~s~~-g~~lasgs-------~Dg~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.++.|||= .++||.+. -.|++.|-|+..+.-+... +.-..++..++|++..+..+++ +..||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~-a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIA-ASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEE-EecCceEEEecc
Confidence 57889982 23333332 1578888888533333322 3345678889999876654443 345999999997
Q ss_pred C-CCceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECC-CCCEEEEEEcCC
Q psy16316 95 H-DNKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDP-EGLIFGVGVNSD 170 (335)
Q Consensus 95 ~-~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~d~ 170 (335)
. ..+++..++.|...|.++.|++. .+.++++|+|++||+||...+..+..+. +...+....|+| .++++++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 4 45789999999999999999985 4578888999999999998776655442 222233457887 578999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCee-eeeecccccCCCCceEEEE
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQC-LQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~ 248 (335)
++++||++...+ ... + .-+..++.++.|+. +.+.+++++.|+.|+.||+++.+. +..+ .+|.-.|..+.|
T Consensus 171 ~l~lwdvr~~gk-~~~-i---~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL---~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 171 TLRLWDVRSPGK-FMS-I---EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL---NGHGLAVRKVKF 242 (311)
T ss_pred eEEEEEecCCCc-eeE-E---EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---cCCceEEEEEec
Confidence 999999987532 221 1 22335667788876 456778889999999999997653 3333 345556788999
Q ss_pred cCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC-CCcEEEeee--ceeEEecc
Q psy16316 249 TPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 249 sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~~--~~~~~w~~ 310 (335)
||.. ..||+++.|-+++|||.+.+.-....-..|+..|..+.||+ +..++|+++ ..+.+|++
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9964 58999999999999999865433322246999999999998 467899886 45788875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=217.25 Aligned_cols=270 Identities=15% Similarity=0.169 Sum_probs=200.6
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-------------eeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-------------RTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
|-..|+...+++++..+++++.+.....|+...+... ..+.+|...|..++|++... ..+++++.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-QKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-CEEEEEeCC
Confidence 3345667778889888899999999999986544221 13456788899999988322 256777889
Q ss_pred CeEEEEEcCCC-------ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEEC
Q psy16316 87 DTVRYLSLHDN-------KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFD 157 (335)
Q Consensus 87 ~~i~~~~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~ 157 (335)
++|++||+.++ ..+..+.+|...|.+++|+|++ ++|+||+.|++|++||+++++....+. +...+..+.|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 99999999764 3567889999999999999985 699999999999999999887665443 34456678899
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe----CCCeEEEEECCCCee-eee
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST----NGSIIRTFDAYNGQC-LQT 232 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----~~~~i~i~d~~~~~~-~~~ 232 (335)
|++.++++++.|++|++||+++.. ....+.. ........+.|.+++..+++++ .++.|++||+++... ...
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~--~v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGT--IVSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCc--EEEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 999999999999999999998642 2222221 1111234567888888777643 478999999987643 222
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
... .....+....|+|++++|++|+ .|+.|++||+.++.........+..++..++|.|+..
T Consensus 254 ~~~--d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 254 VDL--DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred ecc--CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence 211 1222344567899999998887 5999999999988766655555677889999999754
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=228.83 Aligned_cols=282 Identities=20% Similarity=0.252 Sum_probs=216.0
Q ss_pred CCccEEEEEECCCCCEEEEec--CCCeEEEEEccCC------------cceeeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 20 NTDKITSIDYSADGLLLISCS--EDDQIVIYDCELG------------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs--~Dg~i~lwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
++..|++++.+|||..+|||| .||.++||+.+.- +.+.+...|...+++++|++++. .+|+|+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeeccC
Confidence 466799999999999999999 8999999987532 22334456778899999998765 6788999
Q ss_pred CCeEEEEEcCC------------------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-E
Q psy16316 86 DDTVRYLSLHD------------------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-H 146 (335)
Q Consensus 86 d~~i~~~~~~~------------------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~ 146 (335)
|+.|.+|.... .+.+..+++|...|..+.|+|++.+|+|+|.|++|.+||.++..+..++ .
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 1256778999999999999999999999999999999999998776655 3
Q ss_pred ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC--ceeeEEeccCCCccceEEEEccCCCEEEEEe----CCCeEE
Q psy16316 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG--PFSNFKFAAEKECDWTGIKFSADGKYILIST----NGSIIR 220 (335)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----~~~~i~ 220 (335)
+...+.-+.|+|-|++||+-++|+++++|++...... ....+. .......+..+.|||||.+|++.. ....+.
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-hCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 4444566789999999999999999999997652210 000000 011223356799999999998753 245688
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCC-----Cc------------EEEEEeCCCcEEEEECCCCeeEEEeCCCCC
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPD-----SK------------YVISGSTDGRIHIWNAEKGFKVCVLDADHP 283 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~------------~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~ 283 (335)
|.+-.+.+.-..+.+|. ..+..+.|+|. .+ .+|+||.|++|.||+....+.+..+..-..
T Consensus 249 IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 99888877777777654 45677889873 11 689999999999999877666655544456
Q ss_pred CCeEEEEeCCCCcEEEeeeceeEE
Q psy16316 284 SPVQTIQFNPKFNMMASACTNLAF 307 (335)
Q Consensus 284 ~~v~~v~~sp~~~~~~s~~~~~~~ 307 (335)
..|.+++|+|+|-.|..++.+..+
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeE
Confidence 789999999999777766544333
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=210.21 Aligned_cols=296 Identities=19% Similarity=0.284 Sum_probs=227.2
Q ss_pred HHhcccceeeeccCCccEEEEEECCCCCE-EEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 7 VIRSYKVAKLFRENTDKITSIDYSADGLL-LISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 7 ~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.+++|......+.| ..|.+++|+|...+ +|+.+. -.+.||+..+....+++..-+..++.+.|-.++ .+++.|..
T Consensus 13 ~w~~~~~~~~~ke~-~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG--~LlaaGD~ 88 (487)
T KOG0310|consen 13 YWRQETFPPVHKEH-NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG--RLLAAGDE 88 (487)
T ss_pred hhhhhccccccccc-CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCC--eEEEccCC
Confidence 45666666666666 56999999997754 444433 578999998888777777667778888887654 46777888
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCC-CCE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPE-GLI 162 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~ 162 (335)
.|.|+++|..+...++.+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+...+..+ .+.+-+.+.+++|. +.+
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 9999999988878889999999999999999976 57888999999999999987743222 22333455667775 458
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee-eeeecccccCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC-LQTLAGFLNNKG 241 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~ 241 (335)
+++|+.||+|++||.|... .... ..++.+++..+.+-|.|..++++ .+..|++||+-+|.. +..+ .+|.-
T Consensus 169 vvtGsYDg~vrl~DtR~~~-~~v~----elnhg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~qll~~~---~~H~K 239 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLT-SRVV----ELNHGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQLLTSM---FNHNK 239 (487)
T ss_pred EEecCCCceEEEEEeccCC-ceeE----EecCCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCceehhhh---hcccc
Confidence 8999999999999999753 2222 23455677889999999988776 567899999986643 3332 33556
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEeccccccccc
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQ 317 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~~~~~~ 317 (335)
.|+|+.+..++..|++||.|+.|++||..+...+... ..+++|.+++.+|++..++.|..|..+-+.+.+..++
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEee--ecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 7899999999999999999999999997665555554 4689999999999999999998887666554444443
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=211.39 Aligned_cols=252 Identities=19% Similarity=0.293 Sum_probs=201.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+++.+++.||..+|..+.||||.++|++|+.|..+++||+.+|........ +.+.+.+++|.|++.. +.+|+.|+++
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~--~V~Gs~dr~i 336 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR--FVTGSPDRTI 336 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCce--eEecCCCCcE
Confidence 888999999999999999999999999999999999999999988765433 3578899999998776 4556779999
Q ss_pred EEEEcCCCceEeeecCCC-CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHT-KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
..||++... ....+|-. ..|.+++.++||..+++...|..|++++..+..+..............++.+++++.+.-.
T Consensus 337 ~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 337 IMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred EEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc
Confidence 999987653 34444433 4699999999999999999999999999987766666666666777889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEc-cCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS-ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
+..+++||+.... ....+.-.......+. -+|. .+..++++|++|+.|+||+-.+++.+..+.||. .++.+++
T Consensus 416 ~qei~LWDl~e~~--lv~kY~Ghkq~~fiIr-SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs---~~vNcVs 489 (519)
T KOG0293|consen 416 DQEIHLWDLEENK--LVRKYFGHKQGHFIIR-SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS---KTVNCVS 489 (519)
T ss_pred cCeeEEeecchhh--HHHHhhcccccceEEE-eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc---ceeeEEe
Confidence 9999999997421 1111111111111122 2343 355889999999999999999999999998865 5577899
Q ss_pred EcCC-CcEEEEEeCCCcEEEEECCC
Q psy16316 248 FTPD-SKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 248 ~sp~-~~~l~tgs~dg~v~iwd~~~ 271 (335)
|+|. ..++|+||+||+|+||-...
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 9995 56899999999999998754
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=205.20 Aligned_cols=274 Identities=20% Similarity=0.270 Sum_probs=228.4
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
...+.++...|....++||+.|+++.++|..++..+..+.+|...+..+.+.++... +.+++.|..|++|........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~--v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT--VITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh--eeecCCcceEEeeccccccCc
Confidence 345788888888789999999999999999999988899999999999999876554 445667999999999888888
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC---CcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG---SRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
.....|..+|+.+..+|.|.+|++++.|++..+-|++++.+..+..... ......|+|||.+|++|..|+.++|||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 8889999999999999999999999999999999999999877665532 2467889999999999999999999999
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
.+.. ... ....+..++..++|+.+|-||+++++|+.|++||++..+.++++.-.. ...+.++.|.+.|++|+.
T Consensus 377 ks~~--~~a---~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 377 KSQT--NVA---KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred CCcc--ccc---cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEe
Confidence 7632 122 223477889999999999999999999999999999888777765322 224778999999999999
Q ss_pred EeCCCcEEEEECCC--CeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 258 GSTDGRIHIWNAEK--GFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 258 gs~dg~v~iwd~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
++.|=+|++++..+ ..++..+ ..|.+..+.+.|.....++++++-+
T Consensus 450 ~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 450 AGSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred ecceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeeccch
Confidence 99887788777432 3334333 5688899999999999999999743
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=192.02 Aligned_cols=207 Identities=19% Similarity=0.307 Sum_probs=167.8
Q ss_pred eEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCC---ceeEE--EecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPN---CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
.++.+++|++.|+.++|+|- |..|+|||.|+.||+|++..+. |..++ .+...+..++++|.|+++++|+-|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678999999999999997 8899999999999999998533 22222 123345678999999999999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
-||.-.. ..+.......+++.++.+++|+++|++||+++.|+.|.+|.+.....+.-......|...|..+.|||..
T Consensus 86 ~Iw~k~~---~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 86 VIWKKED---GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred EEeecCC---CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9997543 3344455566788889999999999999999999999999988554444333344466778889999999
Q ss_pred cEEEEEeCCCcEEEEECCC---CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 253 KYVISGSTDGRIHIWNAEK---GFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~---~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
.+|+++|.|.+|++|.-.. ....+.+ .+|.+.|++++|+|.|..|++++ ++++||-
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 9999999999999998662 2345566 46989999999999999999986 6789996
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=202.29 Aligned_cols=253 Identities=20% Similarity=0.340 Sum_probs=202.3
Q ss_pred hcccceeeeccCCccEEEEEECCCC---CEEEEecCCCeEEEEEccCCccee----eeecccccceEEEEecCCCeeEEe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADG---LLLISCSEDDQIVIYDCELGTNKR----TVFSKKYGVDLIRFTHAKQAAIHA 81 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g---~~lasgs~Dg~i~lwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 81 (335)
++.+..+++.||.++|.+++|--.. ..|+|+|.|.++++|..+.++... ...+|+..|..++-..+ ...++
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s--gtr~~ 209 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS--GTRFC 209 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC--CCeEE
Confidence 3566778899999999987775333 369999999999999988776432 23478888888876654 45678
Q ss_pred ecCCCCeEEEEEcCC-------------------------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeec
Q psy16316 82 STKIDDTVRYLSLHD-------------------------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136 (335)
Q Consensus 82 ~~~~d~~i~~~~~~~-------------------------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~ 136 (335)
+++.|.++.+|+... +.++-++.||+.+|.++.|.+ ...+.|+|+|.+|+.||+
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence 889999999999321 124567889999999999998 678999999999999999
Q ss_pred CCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE-EEEEeC
Q psy16316 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY-ILISTN 215 (335)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~ 215 (335)
.++++......+....++...|...++++|+.|..+++||.|..... .-...+ .++..-+.++.++|...+ |++++.
T Consensus 289 etg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 289 ETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-VVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred ecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCc-eeEEee-ecchhhhhheecCCCCceEEEEEec
Confidence 99998887777777778888999999999999999999999986433 322332 345557789999998876 567889
Q ss_pred CCeEEEEECCCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 216 GSIIRTFDAYNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 216 ~~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
|+++++||+++.+ .+..+.+ |...++++.|.. +.++++||.|++|+|+...
T Consensus 367 D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCeEEEEEeccCCCcceeecc---CCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9999999999876 5666655 456688888864 5699999999999999754
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=219.72 Aligned_cols=277 Identities=21% Similarity=0.355 Sum_probs=224.2
Q ss_pred eeecc-CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee-eecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~-h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+ |...+.+..|. +.++++++.|.+|++||..++..+.. +.+|..++..+.+.. ....+.+++.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeE
Confidence 34444 56677788777 66899999999999999999998887 899999999999986 33466778889999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
|..++.+..++.||...|.++...+ ..+++||.|.+|++|++.++.+..+.. +.+.+..+.+ ++.++++|+.|++
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~--~~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL--DEPLLVSGSYDGT 352 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe--cCCEEEEEecCce
Confidence 9999999999999999999998765 578889999999999999999888776 5555544444 4889999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-eeeeeecccccCCCCceEEEEcC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
|++||++.+. -++....+...|.++.+.+. ..+++|+-|+.|++||+++. +|+..+.+|.... -.+..
T Consensus 353 v~VW~~~~~~-----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-----~~l~~ 421 (537)
T KOG0274|consen 353 VKVWDPRTGK-----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-----SSLLL 421 (537)
T ss_pred EEEEEhhhce-----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-----ccccc
Confidence 9999998532 23334456677788877765 88999999999999999999 8988887754432 23445
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee-eceeEEeccc
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA-CTNLAFWIPT 311 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~~ 311 (335)
.+++|++++.|+.|++||..++.....+...|.+.|..+++. +..+++++ .+.+++|.++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecc
Confidence 678999999999999999999998888865567899999987 33455544 3679999653
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=210.99 Aligned_cols=251 Identities=21% Similarity=0.364 Sum_probs=211.7
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
+.+++..++.|..+.|+.+.|.++++++++++.|+++++||+.......++.+|...|..+.|...... +.+++.|.+
T Consensus 207 ~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~--vVsgs~DRt 284 (459)
T KOG0288|consen 207 EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR--VVSGSADRT 284 (459)
T ss_pred chhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc--eeeccccch
Confidence 346677889999999999999999999999999999999999999999999999999999999776554 677889999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
++.||+....+.+++-. ...++.+..+ ...++||-.|++||+||+++..+...+...+.+..+.+++++..+.+++.
T Consensus 285 iK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred hhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecC
Confidence 99999999888876532 3455566555 45789999999999999999999988888888888999999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEe-ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKF-AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
|.++++.|++...-. ..+.- ...-.+.|+.+.|||++.|+++|+.|+.|+||+..++++.+.+.....+ ..|.+++
T Consensus 362 Ddtl~viDlRt~eI~--~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~-~aI~s~~ 438 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEIR--QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN-AAITSLS 438 (459)
T ss_pred CCceeeeecccccEE--EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC-cceEEEE
Confidence 999999999874321 11111 1112245888999999999999999999999999999998888654332 2588999
Q ss_pred EcCCCcEEEEEeCCCcEEEE
Q psy16316 248 FTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iw 267 (335)
|+|.|.+|++++.++.+.+|
T Consensus 439 W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EcCCCchhhcccCCcceEec
Confidence 99999999999999999999
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=191.10 Aligned_cols=254 Identities=19% Similarity=0.225 Sum_probs=194.8
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC---CCCe
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK---IDDT 88 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~ 88 (335)
+-..+|+||+++|.|++.+.+.++|+|||.|.+++|||+++|+++.++.. ...|..+.|+.+++..++.+-. ....
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 44568999999999999999999999999999999999999998877543 4568889999988876665432 3456
Q ss_pred EEEEEcC-------CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCC
Q psy16316 89 VRYLSLH-------DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPE 159 (335)
Q Consensus 89 i~~~~~~-------~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (335)
|.+++++ ...+...+..+...++.+-|.|-++.|++|..||.|..||++++...... .+...+.-+.++++
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 8888887 44567778888899999999999999999999999999999987543211 23335566789999
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC--eEEEEECCCCeeee------
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--IIRTFDAYNGQCLQ------ 231 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~--~i~i~d~~~~~~~~------ 231 (335)
..+|++++.|.+-++||+++..- ... .....++++.+++|-...++.++... .|-.-+.+.|+...
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v--~Kt----y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEV--LKT----YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred cceEEecccCccceeeeccceee--EEE----eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 99999999999999999987431 111 12346778899999887777665432 23333344443211
Q ss_pred ---eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 232 ---TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 232 ---~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
++....+|-+++.+++|||+|+..++|++||.|++.-.+..
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 12223445667888999999999999999999999866543
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=195.35 Aligned_cols=241 Identities=19% Similarity=0.304 Sum_probs=188.8
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCC-cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.+.++.|+|+++. ..+++++-||+++|||+... ..+..+..|+..|..+.|.......++.+ +.|++|++|+...++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts-SWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS-SWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee-ccCCceEeecCCCCc
Confidence 4669999999875 68999999999999996543 34555667888999999988766655555 899999999999999
Q ss_pred eEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCc-eeEEEecCCcceEEEC-CCCCEEEEEEcCCeEEEE
Q psy16316 99 YIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNC-QGIMHVSGSRPIAAFD-PEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~v~iw 175 (335)
.++++.||+.-|....|+|. .++++++|.|+++++||++.... +.+..+...+.+..|+ .+.+++++|+.|+.|+.|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999995 58999999999999999986532 2222222223333444 367899999999999999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCe-eeeeecccccCCCCceEEEEcC-CC
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQ-CLQTLAGFLNNKGCPLEASFTP-DS 252 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~sp-~~ 252 (335)
|+|..+. |... ...+.-.+..++|||... .|++++.|-++++||...+. ++++.. .|...+..+.||+ ++
T Consensus 219 Dir~~r~-pl~e---L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 219 DIRNLRT-PLFE---LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFDP 291 (311)
T ss_pred ehhhccc-ccee---ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEEeccccccccC
Confidence 9998653 3332 245566788999999764 66788999999999988554 333333 2456677788888 56
Q ss_pred cEEEEEeCCCcEEEEEC
Q psy16316 253 KYVISGSTDGRIHIWNA 269 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~ 269 (335)
.++|+.+.|+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 79999999999999984
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=230.29 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=190.6
Q ss_pred CCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 20 NTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 20 h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
+...|.++.|+| ++.+||+|+.||+|+|||+.++.....+..|...|..++|.+.. ..++++++.|++|++||+.++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~-~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD-PTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCC-CCEEEEEcCCCEEEEEECCCCc
Confidence 346799999987 47899999999999999999998888888899999999998642 3456777889999999999998
Q ss_pred eEeeecCCCCCeEEEEEC-CCCCEEEEeeCCCcEEEeecCCCCc-eeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 99 YIRYFPGHTKKVNSLCLS-PIDDTFISGSYDKTVRLWDLRSPNC-QGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~-~~~~~l~s~s~D~~i~vWd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
.+..+..| ..|.++.|+ +++..|++|+.|+.|++||++.... ...+ .+...+..+.|. ++.++++++.|++|++|
T Consensus 610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 88888755 689999995 4689999999999999999987652 2222 233345556675 67889999999999999
Q ss_pred EccCCCCC-ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec--------c--cccCCCCce
Q psy16316 176 DVRSFDKG-PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA--------G--FLNNKGCPL 244 (335)
Q Consensus 176 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--------~--~~~~~~~v~ 244 (335)
|++..... ..........+...+..++|+|++.+|++++.|+.|++|+.........+. + ...+...+.
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 99753211 011112223344556789999999999999999999999976553322111 0 112234578
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+++|+|++..|++|+.||.|+||++
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999999986
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=207.23 Aligned_cols=246 Identities=22% Similarity=0.349 Sum_probs=203.9
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+.|..-++-|.++.|-.||++||.|+..|.|+|+|..+...++.+..|..++..+.|++..+ .++.+++.|..+++||
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWD 139 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCC-eEEEecCCCceEEEEE
Confidence 344556678899999999999999999999999999777667788899999999999988654 5667888999999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCC-CceeEEEecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSP-NCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
+.+......+.+|++.|.|.+++|.. .+++|||+||+||+||+++. ..+..+.++..+..+.+-|.|.++++++- +.
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 99988766899999999999999975 58999999999999999987 44445556666666777888888888754 69
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
+++||+-++...... ...+...++|+.+..++..|++++-|+.|++||+.+.+.+..+. ..+++.+++.+|+
T Consensus 219 vkVWDl~~G~qll~~----~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~d 290 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTS----MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSPD 290 (487)
T ss_pred EEEEEecCCceehhh----hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeEEecCC
Confidence 999999764332221 12255678999999999999999999999999988887766553 4578999999999
Q ss_pred CcEEEEEeCCCcEEEEEC
Q psy16316 252 SKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~ 269 (335)
++.++.|-.||.+.+=+.
T Consensus 291 d~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CceEEEecccceeeeehh
Confidence 999999999998777643
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=212.70 Aligned_cols=247 Identities=19% Similarity=0.304 Sum_probs=203.0
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+...+.-+.+.|+++.|+++|.+||.|-.+|.|.|||.+..+..+.+.. |...+.+++|. ..++.+++.|+.|..
T Consensus 209 v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 209 VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILN 284 (484)
T ss_pred eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEE
Confidence 3444555589999999999999999999999999999999998888888 88889999987 446778889999999
Q ss_pred EEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EEEecCCcceEEECC-CCCEEEEE--
Q psy16316 92 LSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IMHVSGSRPIAAFDP-EGLIFGVG-- 166 (335)
Q Consensus 92 ~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~-- 166 (335)
+|+...+... ++.+|...|..+.|++++++|++|+.|+.+.|||........ +..+...+..++|+| ...++|+|
T Consensus 285 ~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 285 HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 9998776544 489999999999999999999999999999999996655443 335566667788888 45677775
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+.|++|++||..+... . .......+|+.+.|++..+.|+++. ....|.||+..+.+.+..+.+ |...|.
T Consensus 365 s~D~~i~fwn~~~g~~--i----~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g---H~~RVl 435 (484)
T KOG0305|consen 365 SADRCIKFWNTNTGAR--I----DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG---HTSRVL 435 (484)
T ss_pred CcccEEEEEEcCCCcE--e----cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC---CcceeE
Confidence 5789999999985321 1 1233445788999999998888754 456799999999887777766 455689
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.++++|||..+++|+.|.++++|++-..
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999998653
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=208.28 Aligned_cols=286 Identities=19% Similarity=0.255 Sum_probs=203.4
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC-cceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.++..++|..|.+.|+|++.+|.-.+++|+|+|-+|++||.+.. .+.+++.+|.+-|-.++|.|... ..+++++.|++
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-ntFaS~sLDrT 164 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-NTFASASLDRT 164 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc-cceeeeecccc
Confidence 46677899999999999999999999999999999999999887 45667888999999999988644 45688899999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCC--CEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (335)
|++|.+....+..+++||...|+|+++-+-| ++|+||+.|.+|++||..+..|+..+ .+...+..+.|+|.-.++++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 9999999999999999999999999998754 69999999999999999999998766 35566788899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEE------------------EEECCC-
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR------------------TFDAYN- 226 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~------------------i~d~~~- 226 (335)
|+.||+++||+-.+.+..... .... ..+.+++-.+.++.+++|.+.+.|. +|...+
T Consensus 245 gsEDGTvriWhs~Ty~lE~tL--n~gl---eRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~e 319 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTL--NYGL---ERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSE 319 (794)
T ss_pred ecCCccEEEecCcceehhhhh--hcCC---ceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCce
Confidence 999999999997664321111 1111 1123444445555555554433322 121110
Q ss_pred -----------------Ceeee-eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEE
Q psy16316 227 -----------------GQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288 (335)
Q Consensus 227 -----------------~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~ 288 (335)
|+.+. ..+......-.|..++-+|+|+++++++ ||.-.||.... +...+-+.-..
T Consensus 320 i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala------~RnK~fG~~~e 392 (794)
T KOG0276|consen 320 IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALA------LRNKAFGSGLE 392 (794)
T ss_pred eeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeee------hhhccccccee
Confidence 10000 0000001112344578899999888876 78888886421 11223345567
Q ss_pred EEeCCCCcEEEeee--ceeEEe
Q psy16316 289 IQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 289 v~~sp~~~~~~s~~--~~~~~w 308 (335)
-.|.++.+..|.-. +++.+.
T Consensus 393 Fvw~~dsne~avRes~~~vki~ 414 (794)
T KOG0276|consen 393 FVWAADSNEFAVRESNGNVKIF 414 (794)
T ss_pred EEEcCCCCeEEEEecCCceEEE
Confidence 77777755555552 445544
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=201.19 Aligned_cols=287 Identities=17% Similarity=0.235 Sum_probs=212.0
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee------------------cccccceEEEEecCCC
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF------------------SKKYGVDLIRFTHAKQ 76 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 76 (335)
+.+..|.-+|.++.++|++++..+++.||+|.=|++.+++..+-+. .|...+..++.+ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS--~D 213 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS--SD 213 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc--CC
Confidence 5678999999999999999999999999999999999887432111 111223334444 45
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEE
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAA 155 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~ 155 (335)
..++++++.|..+.+|+..+.+.++.+.+|.+.|.+++|-.....|.++|.|++|++|++.....+..+ .+...+..+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 668889999999999999999999999999999999999888889999999999999999765444322 2222222223
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
...-++.+.+|+.|+++++|++....+ +-+ ..+...+.+++|-. ...+++|+++|.|.+|++.+.+.+.....
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~eesq-----lif-rg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEESQ-----LIF-RGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccccceeEEEeccccce-----eee-eCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 333467778888999999999954211 111 11223445666653 45689999999999999988776544431
Q ss_pred -c--------ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE--EeCCCCCCCeEEEEeCCCCcEEEeeec-
Q psy16316 236 -F--------LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC--VLDADHPSPVQTIQFNPKFNMMASACT- 303 (335)
Q Consensus 236 -~--------~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~--~~~~~h~~~v~~v~~sp~~~~~~s~~~- 303 (335)
| .++..++.+++..|...++|+||.+|.|++|-++++.+.. .....-.+.|+.++|+++|+.++.|.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 1 1112378899999999999999999999999999884322 122335789999999999997666643
Q ss_pred ---eeEEecc
Q psy16316 304 ---NLAFWIP 310 (335)
Q Consensus 304 ---~~~~w~~ 310 (335)
..+.|..
T Consensus 447 EhRlGRW~~~ 456 (479)
T KOG0299|consen 447 EHRLGRWWCL 456 (479)
T ss_pred ccccceeeEe
Confidence 2566743
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=211.47 Aligned_cols=279 Identities=18% Similarity=0.270 Sum_probs=210.0
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--eeecccccceE-EEEecCCCeeEEeecCCC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TVFSKKYGVDL-IRFTHAKQAAIHASTKID 86 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d 86 (335)
.|++.+.+.||..-|..+.+.+.. .++++|.||++++|+-...+... .+.++.+-+.. +++.+ .+...+..++.|
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D 80 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMD 80 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeeccc
Confidence 689999999999999999876655 78999999999999975544333 33445544544 66665 455556778899
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (335)
.++.+|.+....+..+++||...|.|++...++. ++|||+|.++++|-.. ++.... .+...+-.+..-|++ .+++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEe
Confidence 9999999999999999999999999999887776 9999999999999654 333322 122222233333444 8899
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
|+.|.+|++|.-.+. .+....|...|+++++-++.. ++++++|+.|+.|++ +++++.++.+| ...+.+
T Consensus 157 gsaDKtIklWk~~~~-------l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~gh---tn~vYs 224 (745)
T KOG0301|consen 157 GSADKTIKLWKGGTL-------LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGH---TNFVYS 224 (745)
T ss_pred ccCcceeeeccCCch-------hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeecc---ceEEEE
Confidence 999999999986431 122334666788999987754 678889999999999 78888887664 455677
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCC-CeEEEEeCCCCcEEEeee-ceeEEecc
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS-PVQTIQFNPKFNMMASAC-TNLAFWIP 310 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~~~s~~-~~~~~w~~ 310 (335)
++..++++.++++++|++++||+... ..+.+ .||. .||++.+=++|-+++.++ +-+++|..
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~e--~~q~I--~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKDE--CVQVI--TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecCc--eEEEE--ecCccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 88778889999999999999999863 33333 2555 899999998887766553 56777743
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=208.76 Aligned_cols=292 Identities=17% Similarity=0.328 Sum_probs=218.0
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+.-.|.||..+|+++.|+..|..|||||.|+.|.+||+-...-+..+.+|+..+...-|... ..++.+.+.|+.+++
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~--~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG--DSFLVSVSKDSMIKF 175 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC--CeEEEEeccCceEEE
Confidence 344578999999999999999999999999999999999877777778888888887777653 345666778999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC----------Cc--eeEE-EecCCcc-eEEEC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP----------NC--QGIM-HVSGSRP-IAAFD 157 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~----------~~--~~~~-~~~~~~~-~~~~~ 157 (335)
||+++..+..+.-+|++.|+++++++ +.+++++.|+.+++|++... .+ ...+ ....... -...+
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 99999999999999999999999998 78999999999999998211 00 0000 0000000 01122
Q ss_pred CCCCEEEEEE----------------------------------------------------------------------
Q psy16316 158 PEGLIFGVGV---------------------------------------------------------------------- 167 (335)
Q Consensus 158 ~~~~~~~~~~---------------------------------------------------------------------- 167 (335)
++++++++-+
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence 2333333333
Q ss_pred --------cCCeEEEEEccCCCCC-c----eeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 168 --------NSDTIKLYDVRSFDKG-P----FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 168 --------~d~~v~iwd~~~~~~~-~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
.++++..|-+...... | ...+ ...++...+.+++++.+...++++ .++.+++|+..+.+|++++.
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCcccccccee-eeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEec
Confidence 3444444444320000 0 0001 123455667889999877665554 56789999999999999985
Q ss_pred ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 235 ~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
. +.+.+..|-|.++++++|...|.+.+||+.....+...+ +|.+.|++++.+|++..+++|+ .++++|....
T Consensus 412 ~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 412 C-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred c-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 3 467889999999999999999999999999888777776 6999999999999998888775 5799998766
Q ss_pred ccc
Q psy16316 313 LSN 315 (335)
Q Consensus 313 ~~~ 315 (335)
...
T Consensus 486 ~~~ 488 (888)
T KOG0306|consen 486 VVS 488 (888)
T ss_pred Eec
Confidence 665
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=194.27 Aligned_cols=288 Identities=15% Similarity=0.241 Sum_probs=223.1
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.|++.+.|.||.+-|..++-.....++.++|.|.+.+||.++++.|+.++.+|...|+++.|.+.... +++++.|++.
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L--~lTaSGD~ta 214 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLL--LLTASGDETA 214 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccce--EEEccCCcch
Confidence 57788889999999999998888889999999999999999999999999999999999999986554 4455557777
Q ss_pred EEEE------cCC------------------------------C----ceEeeecCCCCCeEEEEECCCCCEEEEeeCCC
Q psy16316 90 RYLS------LHD------------------------------N----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK 129 (335)
Q Consensus 90 ~~~~------~~~------------------------------~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~ 129 (335)
.+|. +.. + .++..+.||.+.|.++.|...|++++|+|+|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 7774 111 0 02455789999999999999999999999999
Q ss_pred cEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 130 TVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 130 ~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
+..+||+.++.....+. +.....-..-+|..+++++++.|.+.++||++.. +.......++...++++.|..+.+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceeeeecccccceeEEEEecCCc
Confidence 99999999988765542 2222333456788899999999999999999841 222333456666788899988775
Q ss_pred EEEEEeCCCeEEEEECCCCee-eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe----CCCCC
Q psy16316 209 YILISTNGSIIRTFDAYNGQC-LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL----DADHP 283 (335)
Q Consensus 209 ~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~----~~~h~ 283 (335)
++++++|++|++||+++... +.+++ ....+..++.+..++.+|---++..|++||++- .++..+ ..+|.
T Consensus 371 -vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 371 -VVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHR 444 (481)
T ss_pred -eeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccc
Confidence 68899999999999998642 33332 345567789998888999999999999999964 333333 36799
Q ss_pred CCeEEEEeC---CCCcEEEeeec-eeEEec
Q psy16316 284 SPVQTIQFN---PKFNMMASACT-NLAFWI 309 (335)
Q Consensus 284 ~~v~~v~~s---p~~~~~~s~~~-~~~~w~ 309 (335)
..|.+++|. |-.+++.+|.. -+.=|.
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeE
Confidence 999999995 44455555532 344454
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-26 Score=210.23 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=173.7
Q ss_pred cceeeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCc--------ceeeeecccccceEEEEecCCCeeEEee
Q psy16316 12 KVAKLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGT--------NKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
.....|++|.+.|.+++|+|+ +.+|||||.||+|+|||+.++. ....+.+|...|..++|+|... .++++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~-~iLaS 143 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY-YIMCS 143 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC-eEEEE
Confidence 345678999999999999997 7899999999999999997642 1234566788899999998754 35567
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcce-----EEE
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPI-----AAF 156 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~-----~~~ 156 (335)
++.|++|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|++|++||++++.....+. +.+.+.. ..+
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 7789999999999998777776 66889999999999999999999999999999987765442 2222221 234
Q ss_pred CCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 157 DPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 157 ~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
++++.++++++.+ ++|+|||++... .+...... ......+......+++.++++|..|+.|++|++..+. +..
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~l-d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~ 299 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSI-DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRK 299 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEe-cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEe
Confidence 5788888887665 489999998643 23332221 1112222333445668889999999999999998764 333
Q ss_pred ecccccCCCCceEEEEcCCC
Q psy16316 233 LAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~ 252 (335)
+..+. +..+...++|.|..
T Consensus 300 l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 300 VNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ecccc-cCCCccceEEcccc
Confidence 43322 34556678999964
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=187.15 Aligned_cols=234 Identities=23% Similarity=0.416 Sum_probs=192.8
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe--eecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEee
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR--YFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWD 135 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd 135 (335)
..++...+..++|..++. .+++++.|+++.+|+++..+..+ .++||.+.|-.++|+|. .+++++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 445667788888887654 46778889999999998876554 46799999999999985 47999999999999999
Q ss_pred cCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
+++++|.......+..-.+.++|+|.+++++..|..|.+.|.+..+.. ...+....++.++|+.++.+++..+.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~------~~~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV------NEEQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccccee------ehhcccceeeeeeecCCCCEEEEecC
Confidence 999999887777776677899999999999999999999999874321 11223345577899988888888888
Q ss_pred CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 216 ~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.|.|.|..-...+.+..+..|. ....++.|+|+|++||+|+.|-.+.+||+++--.+..+ ..+.-||..++||-+|
T Consensus 168 lG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDG 243 (313)
T ss_pred CceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccccCceEEEEeccCc
Confidence 8999999999888888887764 33468999999999999999999999999865444444 4578899999999999
Q ss_pred cEEEeeece
Q psy16316 296 NMMASACTN 304 (335)
Q Consensus 296 ~~~~s~~~~ 304 (335)
+|||||+-+
T Consensus 244 ~~lASaSED 252 (313)
T KOG1407|consen 244 RMLASASED 252 (313)
T ss_pred ceeeccCcc
Confidence 999999854
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=180.30 Aligned_cols=248 Identities=19% Similarity=0.246 Sum_probs=198.6
Q ss_pred eeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeec
Q psy16316 57 RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136 (335)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~ 136 (335)
..+..++.+|..++|..+++..+ +++.|.++++||+..+.+++++.||...|..++.+.+...+++|+.|+.+.+||+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~l--tcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCL--TCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred eeecccccceEEEEEccCCCEEE--EcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34456778899999988777544 5667999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 137 RSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 137 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
.+++..+.+ .+.+.+..+.|+.+...+++|+-|.++++||.|+..-.|.+. ..+....+.++..+ +..+++|+.
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi---ldea~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI---LDEAKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch---hhhhcCceeEEEec--ccEEEeecc
Confidence 999988766 345567788999999999999999999999999755444433 33344455666654 567899999
Q ss_pred CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCC--eEEEEeCC
Q psy16316 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP--VQTIQFNP 293 (335)
Q Consensus 216 ~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~--v~~v~~sp 293 (335)
||++|.||++.|+......+ .+|.+++|++|++..+.++.|+++++.|.++|+.+..+. +|.+. -.+..++.
T Consensus 164 DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~q 237 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQ 237 (307)
T ss_pred CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecc
Confidence 99999999999976554432 467889999999999999999999999999998877664 57554 34566777
Q ss_pred CCcEEEeeeceeEEeccccccccc
Q psy16316 294 KFNMMASACTNLAFWIPTYLSNHQ 317 (335)
Q Consensus 294 ~~~~~~s~~~~~~~w~~~~~~~~~ 317 (335)
.-..+++|+-+.++|-++..+.++
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cceeEEeccCCceEEEEEecccee
Confidence 778889997555444444555543
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=190.05 Aligned_cols=253 Identities=20% Similarity=0.310 Sum_probs=200.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--eeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.+++++|-.|.++|+++.|+|-..+|+||+.|++|+++|.......+ .++.....+.++.|.|.++..++ +..-.+
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv--gTdHp~ 239 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV--GTDHPT 239 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE--ecCCCc
Confidence 57888999999999999999999999999999999999997655443 34556678899999998776554 445789
Q ss_pred EEEEEcCCCceEee---ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCCCCE
Q psy16316 89 VRYLSLHDNKYIRY---FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 89 i~~~~~~~~~~~~~---~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 162 (335)
+|+||+++-++... -.+|++.|+++.+++.+++.+|||.||.||+||--+++|+..+ |.+..++...|..++++
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE
Confidence 99999998776543 2479999999999999999999999999999999999998765 44455677889999999
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEec--cCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFA--AEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
+.+.+.|.++++|.+.+.+ ++..+.-. .+....-+...|+..+.|++.-.+ .+.+..||.++......+. .+|
T Consensus 320 iLsSG~DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lgH 395 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LGH 395 (430)
T ss_pred EeecCCcceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cCC
Confidence 9999999999999998743 33322211 111112234568888888776544 3568999999987655442 456
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
.+.+..+.-||.+.-+.|+|.|-++++|--
T Consensus 396 n~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 396 NGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCceEEEeCCCCCceeeecccceeeeeee
Confidence 677788999999999999999999999953
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-24 Score=185.64 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=193.8
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~ 112 (335)
+.+++|++.|+.+++||+.+++....+..+ ..+..++|.+++.. +++++..++.+++||+.+++....+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 467899999999999999998877766543 34567888887654 334556789999999999888877765544 567
Q ss_pred EEECCCCCEEE-EeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCC-eEEEEEccCCCCCceeeEEe
Q psy16316 113 LCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKF 190 (335)
Q Consensus 113 ~~~~~~~~~l~-s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~ 190 (335)
++++|+++.++ +++.|+.+++||+++.+....+........+.++|++.+++++..++ .+..||.++.. ......
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~--~~~~~~- 154 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE--IVDNVL- 154 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe--EEEEEE-
Confidence 89999998665 45678999999998876655443333345678999999998887764 56778876522 111111
Q ss_pred ccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeeccccc----CCCCceEEEEcCCCcEEEE-EeCCCcE
Q psy16316 191 AAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLN----NKGCPLEASFTPDSKYVIS-GSTDGRI 264 (335)
Q Consensus 191 ~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~t-gs~dg~v 264 (335)
. ......++|+|++.++++++ .++.|++||+.+++..+.+..... ....+..++|+|++++++. .+.++++
T Consensus 155 -~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 155 -V--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -c--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 1 11235689999999886654 588999999999987766542211 1112456889999998544 4556789
Q ss_pred EEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee---eceeEEecccc
Q psy16316 265 HIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA---CTNLAFWIPTY 312 (335)
Q Consensus 265 ~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~---~~~~~~w~~~~ 312 (335)
.+||..++.....+. +...+.+++|+|++++++++ ++++++|.+..
T Consensus 232 ~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 999998876655443 34578999999999988765 46799997643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=181.02 Aligned_cols=248 Identities=19% Similarity=0.326 Sum_probs=188.1
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
-..|.+.|..+...--|++|||||.|++|||+..+....
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------------------------------------- 45 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------------------------------------- 45 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence 357999999999999999999999999999998754421
Q ss_pred CceEeeecCCCCCeEEEEECC--CCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCC--CCEEEEEEcC
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPE--GLIFGVGVNS 169 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~d 169 (335)
.+.+..+.||.++|+.++|.. .|.+|+|+++||.|.+|.-..++-.... .+..++..+++.|. |..+++++.|
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 124556889999999999964 6899999999999999998777543322 34556677788775 5789999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---C-----------CEEEEEeCCCeEEEEECCCCee--eeee
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD---G-----------KYILISTNGSIIRTFDAYNGQC--LQTL 233 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~~~~~~~~i~i~d~~~~~~--~~~~ 233 (335)
|.|.+.+.+..... ..-+...-+...++++++.|. | +.|++++.|..|++|+..+++- .+++
T Consensus 126 G~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred CcEEEEEEcCCCCc--cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 99999998864221 111222234556788899886 4 4589999999999999887632 2334
Q ss_pred cccccCCCCceEEEEcCCC----cEEEEEeCCCcEEEEECCCC---eeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--e
Q psy16316 234 AGFLNNKGCPLEASFTPDS----KYVISGSTDGRIHIWNAEKG---FKVCVLDADHPSPVQTIQFNPKFNMMASACT--N 304 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~----~~l~tgs~dg~v~iwd~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~ 304 (335)
+ .|...+..++|.|.- .+||++|.||+|.||....- .+...+ ...+.+++.++||+.|++|+.+++ .
T Consensus 204 ~---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 204 E---GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred h---hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcE
Confidence 4 466788899999974 47999999999999976522 122223 346789999999999999997765 4
Q ss_pred eEEeccc
Q psy16316 305 LAFWIPT 311 (335)
Q Consensus 305 ~~~w~~~ 311 (335)
+.+|-.+
T Consensus 280 vtlwke~ 286 (299)
T KOG1332|consen 280 VTLWKEN 286 (299)
T ss_pred EEEEEeC
Confidence 8888543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=189.02 Aligned_cols=228 Identities=18% Similarity=0.293 Sum_probs=189.2
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEE
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAA 155 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~ 155 (335)
.....+++.|..+.++|...++.+..|+||+..|+++.++|+...+++++.|..|++|......+.... -+...+....
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 445667788999999999999999999999999999999999999999999999999998765544333 3445556678
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
.+|.|.||.++++|++..+.|+++... +.... .....+.+++.+|+|||-.|.+++.|+.+++||+.++..+..+.+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs-~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVS-DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcE--EEEEe-eccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 899999999999999999999987432 22111 112446688999999999999999999999999999887666655
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
|.+.|..++|+-+|-+||++.+|+.|++||+.+......+.......|.++.|.+.|.+|+.++.++++|..
T Consensus 388 ---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 388 ---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred ---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 667789999999999999999999999999987655444444444579999999999999999888888764
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=167.29 Aligned_cols=295 Identities=14% Similarity=0.197 Sum_probs=210.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc------CC----cceee-----eecccccceEEEEecC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE------LG----TNKRT-----VFSKKYGVDLIRFTHA 74 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~------~~----~~~~~-----~~~~~~~~~~~~~~~~ 74 (335)
.|+.+..+.. +.+|++++|+|.|.+.|.||..++.||--.. .+ +.... -..|+..+.+++|++.
T Consensus 22 ~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 4555555544 4569999999999999999999999997432 11 11111 1235677999999987
Q ss_pred CCeeEEeecCCCCeEEEEEcCCCce-----EeeecCCCCCeEEEEECCC----CCEEEEee-CCCcEEEeecCCCCceeE
Q psy16316 75 KQAAIHASTKIDDTVRYLSLHDNKY-----IRYFPGHTKKVNSLCLSPI----DDTFISGS-YDKTVRLWDLRSPNCQGI 144 (335)
Q Consensus 75 ~~~~~~~~~~~d~~i~~~~~~~~~~-----~~~~~~H~~~V~~~~~~~~----~~~l~s~s-~D~~i~vWd~~~~~~~~~ 144 (335)
++ ++++++.|.+|++.-+....+ -..+.-|.+.|..++|..+ +..|++++ .|..|.+=|-.+++....
T Consensus 101 ge--liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 101 GE--LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cC--eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 65 678888999999876654322 2346679999999999754 45778766 477777778777665443
Q ss_pred EEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCcee--eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 145 MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS--NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
+......-...++-.+-.+++|+.|.+|++||+|-....... .++...-....+.+++..|.|++|+++..|....+|
T Consensus 179 ~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 179 LSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred ecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 321111112334557889999999999999999853211110 011111122457889999999999999999999999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC---eeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG---FKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
|++.++.++++.. |...+.++.|+|...|++|+|.|.+|++=|+.-. +.....-..|.+.+-.+.|||..--++
T Consensus 259 dirg~r~iq~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred EeeCCceeeeeCC---CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence 9999988887754 5567888999999999999999999999998632 222223356999999999999865444
Q ss_pred e--eeceeEEecc
Q psy16316 300 S--ACTNLAFWIP 310 (335)
Q Consensus 300 s--~~~~~~~w~~ 310 (335)
| ++.+..+|-+
T Consensus 336 sssadkt~tlwa~ 348 (350)
T KOG0641|consen 336 SSSADKTATLWAL 348 (350)
T ss_pred eccCcceEEEecc
Confidence 4 4577999954
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=201.91 Aligned_cols=280 Identities=19% Similarity=0.256 Sum_probs=214.7
Q ss_pred CCccEE---EEEEC-CCCCEEEEecCCCeEEEEEccCCcc------eeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 20 NTDKIT---SIDYS-ADGLLLISCSEDDQIVIYDCELGTN------KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 20 h~~~V~---~v~~s-~~g~~lasgs~Dg~i~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
|...|. ++..+ |++++|.|||.||.|++|+...... ...+..|...++.+.....+. .+.+++.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 45555 5677899999999999999865433 445567778888877776655 34566789999
Q ss_pred EEEEcCCC--ceEeeecCCCCCeEEEEE-CCCCCEEEEeeCCCcEEEeecCCCCc--eeEE----------EecCCcceE
Q psy16316 90 RYLSLHDN--KYIRYFPGHTKKVNSLCL-SPIDDTFISGSYDKTVRLWDLRSPNC--QGIM----------HVSGSRPIA 154 (335)
Q Consensus 90 ~~~~~~~~--~~~~~~~~H~~~V~~~~~-~~~~~~l~s~s~D~~i~vWd~~~~~~--~~~~----------~~~~~~~~~ 154 (335)
++|+...+ -++.++..|.+-|.|+++ -++..+++|||.|+.|.+||++++.. ...+ ....++...
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 99999877 677889999999999999 67778999999999999999997632 1111 112234456
Q ss_pred EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+..+.|..+++|+..+.+++||.++..+ .. ...+|...+..+-.++||+.+++++.|++|++||+...+|+.++.
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~k--im---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKK--IM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccc--ee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 7788888999999999999999987432 12 223677788999999999999999999999999999999999987
Q ss_pred ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee-EEEeCCCCCCCeEEEEeCC--CCcEEEeeeceeEEeccc
Q psy16316 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK-VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFWIPT 311 (335)
Q Consensus 235 ~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~-~~~~~~~h~~~v~~v~~sp--~~~~~~s~~~~~~~w~~~ 311 (335)
.| ...+.++..+|+-.++.+|+.||.|+.=|+.+..+ ...+.. ..+|..+..+. +.-.+++.++.|+-|-..
T Consensus 253 vH---~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 253 VH---KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ec---cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeeccccceecCCc
Confidence 64 34478899999999999999999999999987433 223333 34667777663 333677777888888543
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=194.85 Aligned_cols=270 Identities=17% Similarity=0.223 Sum_probs=212.8
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG 105 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 105 (335)
-++|+ ..+.||.|. ...+.+|+..++....-.......++.+.|.+++. .++.+..++.+.+||..+.+.++.+.+
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccccccC
Confidence 46677 344666664 45899999998875444333477899999988765 455666799999999999999999999
Q ss_pred -CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE-E-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 106 -HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI-M-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 106 -H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
|...|-+++|. +..+.+|+.|+.|..+|++..+.... + .+...++.+.|+++++++|+|+.|+.+.|||....
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-- 333 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-- 333 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--
Confidence 99999999998 56899999999999999998765433 2 35556777899999999999999999999998542
Q ss_pred CceeeEEeccCCCccceEEEEccCC-CEEEEE--eCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADG-KYILIS--TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.+. ....++...|.+++|+|-. ..||+| +.|+.|++||..++..+..+. ....|..+.|++..+-|+++.
T Consensus 334 ~p~---~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 EPK---FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ccc---EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEec
Confidence 222 2234567788999999965 456654 457899999999998887764 345678899999887666544
Q ss_pred --CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 260 --TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 260 --~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+..|.||+..+-.++..+ .+|...|..++++|+|..+++|. .++++|+.-
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCCCCcEEEEeccccceeeee-cCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 3667999999886666665 57999999999999999999886 469999763
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=197.91 Aligned_cols=238 Identities=20% Similarity=0.325 Sum_probs=191.0
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
-...|+++...|||+-|++|+.-.++.|||+.+....-. +.........++.+++.. +.+++..||.|++||+.+.
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccc
Confidence 356788999999999999999999999999987654322 222223345556666544 5556667999999999999
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
..++.|+||++.+.|+.++++|..|.||+-|++||.||++.++......+...+-.+...|.+.++++|..++.+-+-..
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 99999999999999999999999999999999999999998876554444444444567799999999999998888766
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
...+ .+. ...++..|.+++|++-|+++++.+.|..+..|.+..|..+.... ....|+++.+|.|.++++|
T Consensus 622 skp~-----kyq-lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 622 SKPE-----KYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred CCcc-----cee-ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCcceeeeeccCceEEEe
Confidence 5422 122 23345567889999999999999999999999999886655433 4567899999999999999
Q ss_pred EeCCCcEEEEEC
Q psy16316 258 GSTDGRIHIWNA 269 (335)
Q Consensus 258 gs~dg~v~iwd~ 269 (335)
||.|++..+|.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999999999875
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=207.09 Aligned_cols=249 Identities=15% Similarity=0.230 Sum_probs=193.6
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC----------C--------cceeeeecccccceEEEEecCC
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL----------G--------TNKRTVFSKKYGVDLIRFTHAK 75 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~ 75 (335)
.-+...|.+.|+|+.|+|||++||+||+|+.|.||+... | ++...+.+|...|..+.|+|+
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~- 140 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD- 140 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-
Confidence 345678999999999999999999999999999999872 1 134456778889999999984
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC------
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG------ 149 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~------ 149 (335)
..++++.+.|++|.+||..+.+.++++++|...|..+.|.|-|++++|-+.|++|++|++....+...+.-..
T Consensus 141 -~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 141 -DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred -ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 4578888999999999999999999999999999999999999999999999999999977655544332111
Q ss_pred -CcceEEECCCCCEEEEEEc----CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-------------C----
Q psy16316 150 -SRPIAAFDPEGLIFGVGVN----SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-------------G---- 207 (335)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------~---- 207 (335)
-.....|+|||.++++.-. ..++.|.+=. .+..-....+|..++..++|+|. .
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-----tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-----TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecC-----CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 1123579999999988532 2356665421 12222234556667888899873 1
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
..+|+|+.|+.|-||.....+.+-..... ....|..++|+|||-.|..+|.||+|.+..+++
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 16788999999999998766554433322 234588999999999999999999999998864
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=194.47 Aligned_cols=293 Identities=17% Similarity=0.210 Sum_probs=216.4
Q ss_pred HHHHhcccce--eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEee
Q psy16316 5 DNVIRSYKVA--KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 5 ~~~~~~~~~~--~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
.+++|+|... ..|+||++.|++++.+|.|.+|||||+||++|||.+.+|.|++++.- ...|.+++|.+.+...+++.
T Consensus 382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEE
Confidence 3567777654 56899999999999999999999999999999999999999987654 34789999999888777665
Q ss_pred cCCCC--------------------------------eEEEEEcCCC----ceEeeecCCCCCeEEEEECCCCCEEEEee
Q psy16316 83 TKIDD--------------------------------TVRYLSLHDN----KYIRYFPGHTKKVNSLCLSPIDDTFISGS 126 (335)
Q Consensus 83 ~~~d~--------------------------------~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s 126 (335)
+-.+. .+..|.-... +-++..--|...|+.+.||..|.+|++..
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 43322 2234432210 11223334889999999999999999976
Q ss_pred CC---CcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEE
Q psy16316 127 YD---KTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK 202 (335)
Q Consensus 127 ~D---~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (335)
.| ..|.|.++.....+.-+ ...+....+.|+|...++++++. +.|+|||+.... . .+........+..++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe--l---vKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE--L---VKKLLTGSKWISSMS 614 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH--H---HHHHhcCCeeeeeee
Confidence 54 56788888766554333 34566778899999988888865 689999986411 0 111222334567899
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCC-eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC-------CC--
Q psy16316 203 FSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE-------KG-- 272 (335)
Q Consensus 203 ~s~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~-------~~-- 272 (335)
++|.|.-|++++.++.+..||+.-. +..+++.. |...+.+++||+.-.++++|+.||++.|+-.. +.
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 9999999999999999999998754 44555554 34456789999999999999999999998432 11
Q ss_pred eeEEEeCCCCCCC----eEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 273 FKVCVLDADHPSP----VQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 273 ~~~~~~~~~h~~~----v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
..+..+ .+|... |.++.|||..+.|.+++ ++|++|
T Consensus 692 VPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred Eeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 122334 357655 89999999999888876 467777
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=167.33 Aligned_cols=245 Identities=24% Similarity=0.341 Sum_probs=190.5
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-----eeeecccccceEEEEecCCC--eeEEeecC-CCCeE
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-----RTVFSKKYGVDLIRFTHAKQ--AAIHASTK-IDDTV 89 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~d~~i 89 (335)
+-|.+.|.|++|+|+|.++|+||.|++|++--.....+. ..+.-|...+..++|..+++ ..++++++ .|-.|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 469999999999999999999999999999765543332 23445677888999975543 45555544 46677
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE----ecC----CcceEEECCCCC
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH----VSG----SRPIAAFDPEGL 161 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~----~~~----~~~~~~~~~~~~ 161 (335)
.+-|-..++..+-+.||++.|.++ ++-++-++++||.|.+||+||++-..|..++. ..+ .+..++.+|.|+
T Consensus 166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 777888999999999999999887 33457899999999999999999888876652 122 345678999999
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee--cccccC
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL--AGFLNN 239 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~ 239 (335)
++++|-.|....+||+|..+ +...+ ..+...+.++.|+|...|+++++.|..|++-|+..- ...++ .....|
T Consensus 245 ll~sg~~dssc~lydirg~r--~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~eh 318 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGR--MIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAEH 318 (350)
T ss_pred eeeeccCCCceEEEEeeCCc--eeeee---CCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEec
Confidence 99999999999999998632 33322 345677899999999999999999999999998632 11111 111235
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+..+..+.|+|..--+++.|.|.++.+|-+
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEecc
Confidence 566778999999888999999999999965
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-23 Score=179.83 Aligned_cols=271 Identities=18% Similarity=0.239 Sum_probs=193.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEE-EEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.++.+.+.+|.. +.++.|+|+|+.+ ++++.|+.|++||..+++....+..+ ..+..+.+.+++.. +++++..++.+
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~-l~~~~~~~~~l 97 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKI-LYIANEDDNLV 97 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCE-EEEEcCCCCeE
Confidence 345566776654 6789999999876 67788999999999988776555433 33456777776553 44455668999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC-cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEE-E
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK-TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVG-V 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 167 (335)
++||+.+.+.+..++.+ ..+.+++|+|++..+++++.++ .+.+||..++..............+.++|++..++++ .
T Consensus 98 ~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99999998887777632 3468899999999999988775 5677898877655433333334457899999877544 4
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccC----CCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAE----KECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
.++.+.+||+++... ...+..... ......+++|+|++++++++ ..++.+.+||..+++..+.+.. ...
T Consensus 177 ~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~ 250 (300)
T TIGR03866 177 IGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----GQR 250 (300)
T ss_pred CCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe----CCC
Confidence 689999999986421 122211110 11122468899999986654 4456799999998877655421 234
Q ss_pred ceEEEEcCCCcEEEEE-eCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 243 PLEASFTPDSKYVISG-STDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 243 v~~~~~sp~~~~l~tg-s~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
+..++|+|++++|+++ +.+++|++||..++.....+.. . ...+.++|+|
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~-~~~~~~~~~~ 300 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-G-RLPWGVVVRP 300 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-c-cccceeEeCC
Confidence 6789999999999886 4689999999999887776653 3 3448899886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=199.06 Aligned_cols=244 Identities=22% Similarity=0.271 Sum_probs=190.3
Q ss_pred cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC--------------------------------C-----------
Q psy16316 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD--------------------------------N----------- 97 (335)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--------------------------------~----------- 97 (335)
.|+..|-++.|++++ .++|+++.|+.||||.+.. .
T Consensus 265 ah~gaIw~mKFS~DG--KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG--KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCCCC--ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 577788889998865 4788999999999998755 0
Q ss_pred -----------------ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC-C
Q psy16316 98 -----------------KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-E 159 (335)
Q Consensus 98 -----------------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (335)
++++.|.||.+.|..+.|+.+ ++|+|+|.|++||+|++....|+.++.+..-+++++|+| |
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVD 421 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccC
Confidence 023456799999999999985 599999999999999999999999999988899999998 7
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc-
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN- 238 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~- 238 (335)
.++|++|+-|+.++||++... ......+...-|++++|.|||++.++|+-+|.+++|++...+......-+..
T Consensus 422 DryFiSGSLD~KvRiWsI~d~------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDK------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred CCcEeecccccceEEeecCcC------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 799999999999999998652 1222334445678999999999999999999999999988776544421111
Q ss_pred ----CCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCC-eEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 239 ----NKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP-VQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 239 ----~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~-v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
....|+.+-|.|.. ..+++.+.|.+|||+|..+...++.+...+... =...+|+.+|+++++++ ..+.+|..
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 11258888888743 457777889999999997666666665434322 13568999999999997 45888875
Q ss_pred ccc
Q psy16316 311 TYL 313 (335)
Q Consensus 311 ~~~ 313 (335)
+..
T Consensus 576 ~~~ 578 (712)
T KOG0283|consen 576 DSF 578 (712)
T ss_pred CCC
Confidence 333
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=197.15 Aligned_cols=273 Identities=17% Similarity=0.254 Sum_probs=208.3
Q ss_pred EEEEecCCCeEEEEEccCCcce----ee---------------------------------eecccccceEEEEecCCCe
Q psy16316 35 LLISCSEDDQIVIYDCELGTNK----RT---------------------------------VFSKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~----~~---------------------------------~~~~~~~~~~~~~~~~~~~ 77 (335)
-|+|||.|+|||+||++.+.+- +. ......++.+++.+|+.
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-- 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-- 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc--
Confidence 4899999999999999763211 01 11223456667777654
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCC---CCEEEEeeCCCcEEEeecCCCCce-eEE-EecCCcc
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI---DDTFISGSYDKTVRLWDLRSPNCQ-GIM-HVSGSRP 152 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~i~vWd~~~~~~~-~~~-~~~~~~~ 152 (335)
..++++...|.+|+|++.+-+....+++|...|.|+.|+.. ..+|+++|.|..|.++|....... ..+ .+...++
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 45778888999999999999989999999999999999853 368999999999999999764322 222 3344556
Q ss_pred eEEECCCC--CEEEEEEcCCeEEEEEccC-CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 153 IAAFDPEG--LIFGVGVNSDTIKLYDVRS-FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 153 ~~~~~~~~--~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
.+.|.-.| ..+++++.|+.+.+ +... ...+..............+..|+..|..+++++++.|+.|+||++.+++.
T Consensus 552 svKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 66665544 55677778766543 3321 11122222222223344567899999999999999999999999999999
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEE--eeeceeEE
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMA--SACTNLAF 307 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~--s~~~~~~~ 307 (335)
.+.+++-..+.+....+...|.|-||||...|+++.++|..+|+.+... .+|...|+.+.|.|+-+-|+ +|+++|.+
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GHsE~VTG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGHSEAVTGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCcchheeeeeecccchhheeecCCceEEE
Confidence 9999998888888899999999999999999999999999999888766 57999999999999986555 45577999
Q ss_pred eccc
Q psy16316 308 WIPT 311 (335)
Q Consensus 308 w~~~ 311 (335)
|-++
T Consensus 710 W~lp 713 (1080)
T KOG1408|consen 710 WKLP 713 (1080)
T ss_pred EECc
Confidence 9653
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=185.56 Aligned_cols=248 Identities=17% Similarity=0.257 Sum_probs=192.8
Q ss_pred cCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCccee----------eeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 19 ENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKR----------TVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.|.+.|+.+++-|+. .++||++..+.+.|||........ .+.+|......++|++...+ .+++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCCC
Confidence 599999999999977 588899999999999987543222 45667666777888876555 456777899
Q ss_pred eEEEEEcCCCc-------eEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCC--CceeEE-EecCCcceEEE
Q psy16316 88 TVRYLSLHDNK-------YIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSP--NCQGIM-HVSGSRPIAAF 156 (335)
Q Consensus 88 ~i~~~~~~~~~-------~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~--~~~~~~-~~~~~~~~~~~ 156 (335)
++.+||+.... ....+.+|.+.|..++|++.. .++.+++.|+.+.|||+|++ ++.... .+.+.+.++.|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999996432 346789999999999999964 68899999999999999953 333222 34556778889
Q ss_pred CC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee-----
Q psy16316 157 DP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC----- 229 (335)
Q Consensus 157 ~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~----- 229 (335)
+| ++.++|+|+.|++|.+||+|.+.. .+....++...+.++.|||+.. .|++++.|+.+.+||+..-..
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNK----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhccc----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 88 467899999999999999998754 2233456677788999999865 667788899999999864211
Q ss_pred ------eeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 230 ------LQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 230 ------~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
..-+..|.+|...|..++|+|+.. .|++.++|+.+.||.+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 122345677888899999999765 689999999999999864
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=185.56 Aligned_cols=245 Identities=20% Similarity=0.297 Sum_probs=190.2
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
++|.+.|.+++.|+||+|||+|+.|..|.|||+++.+....+.+|...|..++|-..... +.+++.|+++++|+++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~--lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE--LYSASADRSVKVWSIDQL 276 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc--eeeeecCCceEEEehhHh
Confidence 499999999999999999999999999999999999999999999999999999765544 345567999999999999
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
..+.++-||.+.|.++....-.+.+-.|+.|+++++|++......-.....+...+++|-. ...|++|+++|.|.+|++
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence 9999999999999999998877766667799999999995433322223344556666544 357899999999999998
Q ss_pred cCCCCCceeeEEeccCC---------CccceEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecccccCCCCceEEE
Q psy16316 178 RSFDKGPFSNFKFAAEK---------ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ-CLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~ 247 (335)
.. ..|+......++. +..+++++.-|...++++|+.+|.|++|-+..+- .+..+. ...-.++|.+++
T Consensus 356 ~K--Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~-~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 356 LK--KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY-SLSLVGFVNSLA 432 (479)
T ss_pred cc--cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee-ecccccEEEEEE
Confidence 75 3455444432221 1246889999999999999999999999988762 222222 223567888999
Q ss_pred EcCCCcEEEEE-eCCCcEEEEE
Q psy16316 248 FTPDSKYVISG-STDGRIHIWN 268 (335)
Q Consensus 248 ~sp~~~~l~tg-s~dg~v~iwd 268 (335)
|+++|+.|++| +..-++=-|-
T Consensus 433 f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EccCCCEEEEecccccccceee
Confidence 99999955554 4455555553
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-24 Score=194.12 Aligned_cols=271 Identities=16% Similarity=0.239 Sum_probs=207.5
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC-cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+|++--+.|.|.|+|..+.+|+.||.|++|+.... +....+..+...+..++.. .+ .+++++.+++|.+|.+.++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN--HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--cc--ceEEeeccceEEEeeCCCC
Confidence 68888999999999999999999999999998766 4444444333344444432 22 5667778999999999887
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
..-..+.--+-++.+++|+.+|++++.||.|-.|++-++.......+. .+.+.+..+.++|.++++|+.+.||+|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 655444445678999999999999999999999999999877665544 4566677789999999999999999999999
Q ss_pred ccCCCCCce-eeEEec--cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 177 VRSFDKGPF-SNFKFA--AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 177 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
+........ ...... ......+..++|+|++..+++...++.|++|+..+++....+..-..+. .+..+.|+|+|+
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGK 245 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCc
Confidence 976321100 000000 0112234678999999899999999999999999998877776533332 267899999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 254 ~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
|||+++.||.|.|||..+..+ . .....|.+++|.|+.+-+.
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~----~-~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER----H-EFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred EEeeeccCCcEEEEecccchh----c-cccceeEEEecCCCCCeeE
Confidence 999999999999999987332 1 1346899999999977544
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=182.34 Aligned_cols=301 Identities=18% Similarity=0.258 Sum_probs=219.6
Q ss_pred cccceeeeccCCccEEEEEECCCC--CEEEEecCCCeEEEEEccCCcc----eeeeecccccceEEEEecCCCeeEEeec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADG--LLLISCSEDDQIVIYDCELGTN----KRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+.+..+++-|.++|+++.|+|.. +++|+|+.-|+|-+||+.+.+. ...+..|..+|..+.|.|.....+ .++
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i-~ss 253 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI-YSS 253 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe-eee
Confidence 345556788999999999999965 5899999999999999964332 122345677899999999766554 455
Q ss_pred CCCCeEEEEEcCCCceEeeecC--CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPG--HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPE 159 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (335)
+.||++|+-|++....-.++.- -.....+++|+.+...++.+..=|...+||++++...... .+...+..++++|-
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 6899999999998765555543 3455678889888887888777679999999987653221 12224566788885
Q ss_pred C-CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC----CCeeeeeec
Q psy16316 160 G-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY----NGQCLQTLA 234 (335)
Q Consensus 160 ~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~ 234 (335)
. .++++++.|++++|||+|.+..... .+-...++...|.+..|||++-.|++.+.|..|++||.. .-....++.
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 4 6789999999999999998765432 133344566678999999999999999999999999984 222222332
Q ss_pred ccccCC---CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEE-EEeCCCCcEEEeee-ceeEEec
Q psy16316 235 GFLNNK---GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT-IQFNPKFNMMASAC-TNLAFWI 309 (335)
Q Consensus 235 ~~~~~~---~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~-v~~sp~~~~~~s~~-~~~~~w~ 309 (335)
|.+.. -.+....|.|+..++++|..-..|-|+|-..+..++.+.......|.+ ..|||-+..+++|+ ..++||+
T Consensus 413 -Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred -ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 22211 134567899999999999999999999988777666654333335555 47999988777776 4578886
Q ss_pred cccc
Q psy16316 310 PTYL 313 (335)
Q Consensus 310 ~~~~ 313 (335)
++.+
T Consensus 492 ft~k 495 (498)
T KOG4328|consen 492 FTNK 495 (498)
T ss_pred EecC
Confidence 5443
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=184.74 Aligned_cols=251 Identities=16% Similarity=0.310 Sum_probs=194.8
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.....|+.|.|.|..+.++. ..++|+|+|++|+.|..+. ...+++.+. ..+..+... .....++++ ...|.+
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~--~~~~~FaTc--Ge~i~I 171 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHH--RKNSVFATC--GEQIDI 171 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccc--ccccccccc--Cceeee
Confidence 34568999999999999998 6789999999999998765 234444332 222222221 122334443 467999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
||.....+++.+.-..+.|.++.|+|-- ..|++|+.|++|.++|++++.....+...-....++|+|+.-.|++|..|.
T Consensus 172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 9999999999998888999999999964 578888899999999999988876665555556789999888999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
.+..||+|.+.. ......++...++.++|||.|.-+++|+.|++|+||....+..-... |......|.++.||.
T Consensus 252 nlY~~DmR~l~~----p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 252 NLYTYDMRNLSR----PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSM 325 (433)
T ss_pred cceehhhhhhcc----cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEEEec
Confidence 999999997542 23344566778899999999999999999999999998876432222 223345578999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
|.+|+++||+|++|++|.....+++.
T Consensus 326 Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccEEEecCCCcceeeeecchhhhcC
Confidence 99999999999999999876544443
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=172.27 Aligned_cols=278 Identities=17% Similarity=0.301 Sum_probs=208.9
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 103 (335)
-.|+.|++.|.+||+|..||.|.|||+.|-...+.+..|..++.+++|++++...+ +++.|..+.+||+..+.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~Ll--tsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLL--TSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEee--eecCCceeEEEeccCCCceeEE
Confidence 67999999999999999999999999999888788888999999999999876544 5557999999999999988887
Q ss_pred cCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE------ecCCcceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 104 PGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
+ -..+|+.+.|+|.. +..+..=.+..-.+-++..+.. ..+. .+.......|++.|+++.+|...|.+.++|
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 7 57899999999965 4444444555556666654221 1111 111122235889999999999999999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-------ee--eeeecccccCCCCceEEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-------QC--LQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-------~~--~~~~~~~~~~~~~v~~~~ 247 (335)
..+.+. ...++. .....+..+.++..|+.|+..+.|+.||.|++..- +. ..++....+.. .=.+++
T Consensus 182 a~t~e~--vas~ri--ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-~Wk~cc 256 (405)
T KOG1273|consen 182 AETLEC--VASFRI--TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-QWKKCC 256 (405)
T ss_pred cchhee--eeeeee--chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh-hhhhee
Confidence 887532 222221 22345678999999999999999999999997621 11 01111111111 113589
Q ss_pred EcCCCcEEEEEeC-CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee-eceeEEecc
Q psy16316 248 FTPDSKYVISGST-DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA-CTNLAFWIP 310 (335)
Q Consensus 248 ~sp~~~~l~tgs~-dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~ 310 (335)
||-+|.|++.|+. ...++||+...|..+.+++........+|+|+|-.+.++|- ++++.+|..
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEe
Confidence 9999999888875 45699999999999999877665778899999999988876 478999953
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=172.58 Aligned_cols=238 Identities=20% Similarity=0.285 Sum_probs=175.5
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-Cce-EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKY-IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
....|..++|+| ....+++.+++|++||+|++.. +.. .+....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEecc-ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 456789999999 3445666788999999999976 333 2456679999999999999999999999999999999999
Q ss_pred CceeEEEecCCcceEEECCCC--CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC
Q psy16316 140 NCQGIMHVSGSRPIAAFDPEG--LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS 217 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~ 217 (335)
+...+-.+.+.+..+.|-+.. ..+++|+.|.++|.||.|. ..+.....+. + ..-+.+-....+++++.++
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~--~~pv~t~~LP-e-----RvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS--SNPVATLQLP-E-----RVYAADVLYPMAVVATAER 176 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC--CCeeeeeecc-c-----eeeehhccCceeEEEecCC
Confidence 887776666666555554444 4899999999999999986 3334333221 1 1234444567889999999
Q ss_pred eEEEEECCCCeee-eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC-------eeEEEeC---CCCCCCe
Q psy16316 218 IIRTFDAYNGQCL-QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG-------FKVCVLD---ADHPSPV 286 (335)
Q Consensus 218 ~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~-------~~~~~~~---~~h~~~v 286 (335)
.|.+|+++++... ++.+.. ..-.+.+++..+|.+..|-|+.+|++.|..+..+ +++++-. .+.-.+|
T Consensus 177 ~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred cEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 9999999876432 222222 1233567888888888899999999999988764 2333211 1123579
Q ss_pred EEEEeCCCCcEEEeeece--eEEecc
Q psy16316 287 QTIQFNPKFNMMASACTN--LAFWIP 310 (335)
Q Consensus 287 ~~v~~sp~~~~~~s~~~~--~~~w~~ 310 (335)
++++|||....|++++++ .-.|.-
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred cceEeecccceEEEecCCceEEEecc
Confidence 999999998889988754 566754
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=169.64 Aligned_cols=298 Identities=19% Similarity=0.307 Sum_probs=215.9
Q ss_pred eccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcce---------------eeeecccccceEEEEecCCCeeEE
Q psy16316 17 FRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNK---------------RTVFSKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
-+.|.+.|+++...+ .|+|++||+.||.|-+||++..... ..-.+|++++..+.|.|-.++ ++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 467999999999997 6789999999999999999865410 111356788999999886554 56
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCC---CCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEE
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI---DDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAF 156 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~ 156 (335)
.+++.|.++++||..+-+....|+ -.+.|.+-+++|- ..++++|..|-.|++-|+.++.+...+. +.+.+-.+.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 677889999999999988777765 3567777788874 3578888899999999999998876652 3444556778
Q ss_pred CCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEEe-----------ccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC
Q psy16316 157 DPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKF-----------AAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224 (335)
Q Consensus 157 ~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~ 224 (335)
+|... ++++|+.|+.|++||+|... +.+..+.. ...+...+++++|+.++.++++.+.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 88654 57889999999999998742 22221111 1123345788999999999999999999999999
Q ss_pred CCCeeeeeecccc---cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 225 YNGQCLQTLAGFL---NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 225 ~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.+|+....-.+.. .....-.-+. +.+...++--=.++.+.++++-++..+..+. .|-..|.+.+|.|+.+...++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-THLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-cccceeeEEeecCchhhhhcc
Confidence 9886432211111 1111111111 2333444444456889999999999888775 588889999999999998888
Q ss_pred e--ceeEEecccccccccCC
Q psy16316 302 C--TNLAFWIPTYLSNHQEP 319 (335)
Q Consensus 302 ~--~~~~~w~~~~~~~~~~~ 319 (335)
+ +++.-|.+.+++-.+-.
T Consensus 354 ~~d~ni~~w~p~l~~pt~~~ 373 (397)
T KOG4283|consen 354 DMNGNIYMWSPALKSPTKIS 373 (397)
T ss_pred ccCCccccccccccCCcccc
Confidence 6 56777887555444433
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=185.14 Aligned_cols=295 Identities=18% Similarity=0.299 Sum_probs=226.3
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
+.-++..+|+++...|+++.=+|-=..+|.|-.+|+|.|+|+..++.+..+......|+.++|..++... ++++...|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~-las~~~~G~ 268 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL-LASGRSNGD 268 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee-EEeccCCce
Confidence 4567778999999999999988888899999999999999999999998887667899999998887654 456666899
Q ss_pred EEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-----------------ceeEE-----
Q psy16316 89 VRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-----------------CQGIM----- 145 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-----------------~~~~~----- 145 (335)
+-+||++..+.+..++ .|.+.|....|.|....++|++.|+++++|=..++. |+..+
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999999988876665 898999999999988899999999999988332100 00000
Q ss_pred ---------------------------------------------------------------------Ee---------
Q psy16316 146 ---------------------------------------------------------------------HV--------- 147 (335)
Q Consensus 146 ---------------------------------------------------------------------~~--------- 147 (335)
|.
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 00
Q ss_pred -------------c------CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 148 -------------S------GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 148 -------------~------~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
. ....+++.++.|++.+.|+..|+|.+|++.++- ....+.....+..++.+++.+.-++
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecCCCc
Confidence 0 001123445667888888899999999987632 1112212234556788999998889
Q ss_pred EEEEEeCCCeEEEEECCCCeeee--------------------------------------eecccccCCCCceEEEEcC
Q psy16316 209 YILISTNGSIIRTFDAYNGQCLQ--------------------------------------TLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 209 ~l~~~~~~~~i~i~d~~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~sp 250 (335)
.+++++.+|.+++||..+..... ..+.+.+|...+.+++|||
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 99999999999999976543111 1122345667788999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec---eeEEe
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT---NLAFW 308 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~---~~~~w 308 (335)
||++|++++.|++|++||+.++..+..+. -..++..+.|||+|.+||++.- .|.+|
T Consensus 587 DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred CCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999998877653 3468899999999999999963 36777
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=169.11 Aligned_cols=251 Identities=14% Similarity=0.255 Sum_probs=191.0
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+|.+-|.++.|++.|+++||||.|++++|||.+... +...+..|...+-.+.|.+..-+.++++++.|+++.+|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4899999999999999999999999999999965432 344567788899999999988889999999999999996
Q ss_pred cCC---------CceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCC------ceeEEE--------ec
Q psy16316 94 LHD---------NKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPN------CQGIMH--------VS 148 (335)
Q Consensus 94 ~~~---------~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~------~~~~~~--------~~ 148 (335)
-.. .....++..-...|+.+.|.|. |-.|++++.||.+||++.-... .+..+. ..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 421 1123456677889999999996 6789999999999999865432 121111 11
Q ss_pred CCcceEEECCC---CCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC----CEEEEEeCC
Q psy16316 149 GSRPIAAFDPE---GLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG----KYILISTNG 216 (335)
Q Consensus 149 ~~~~~~~~~~~---~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~~ 216 (335)
....++.|+|. ..++++|+.+ +.++||....... .........++.+++..++|.|+- ..||+++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 12234566653 4578888765 4899998765322 233344455788899999999963 478899999
Q ss_pred CeEEEEECCCCe-----------------eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 217 SIIRTFDAYNGQ-----------------CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 217 ~~i~i~d~~~~~-----------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
| |+||.+.... .+..+..+.+|.+.+.++.|.-.|..|++.|.||+||+|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 9999976211 234445566788889999999999999999999999999754
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=196.08 Aligned_cols=285 Identities=17% Similarity=0.257 Sum_probs=208.8
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCccee--eee-c----ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TVF-S----KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
..+|+..++-..++.++.. .++||......... .+. + .......|.|. .-...++++++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEecCc
Confidence 4566777888888888765 77888775432111 111 1 12234556666 22334667777899999999987
Q ss_pred ---CceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECC-CCCEEEEEEcCC
Q psy16316 97 ---NKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDP-EGLIFGVGVNSD 170 (335)
Q Consensus 97 ---~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~ 170 (335)
.+.+..|..|...|++++|++. .++|+|||.||+|++||++.......+ ....++.-+.|+| .+.+|+++.+.|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 6677889999999999999986 478999999999999999987665444 2334455677877 468999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
.+.+||+|.... +. .....+..++.++.|+|++.+||+|+.|+.|+|||+.+.+...... .+...++.++.|-|
T Consensus 200 ~lqlWDlRqp~r-~~---~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t--InTiapv~rVkWRP 273 (839)
T KOG0269|consen 200 YLQLWDLRQPDR-CE---KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT--INTIAPVGRVKWRP 273 (839)
T ss_pred eEEEeeccCchh-HH---HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE--Eeecceeeeeeecc
Confidence 999999986432 11 1223456778899999999999999999999999998765443332 23456677899999
Q ss_pred CCc-EEEEEeC--CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC-CCcEEEeeeceeEEecccccccc
Q psy16316 251 DSK-YVISGST--DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWIPTYLSNH 316 (335)
Q Consensus 251 ~~~-~l~tgs~--dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~~~~~~~w~~~~~~~~ 316 (335)
..+ +||+++. |-.|+|||+.....+......|...++.++|.. +...+.+++.+..+..-.....+
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 765 5788774 778999999988766655567999999999954 56778888877655433333333
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=201.64 Aligned_cols=245 Identities=18% Similarity=0.353 Sum_probs=203.5
Q ss_pred HHhcccce----eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEee
Q psy16316 7 VIRSYKVA----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 7 ~~~~~~~~----~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
+-+.+++. +.+-.|...|.++..-..++.+++|++|..+-||.+..-..+..+.+|..+|.++.|.... .+++.
T Consensus 10 ~~~~t~Lr~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E--~Llaa 87 (825)
T KOG0267|consen 10 TKRATKLRVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE--RLLAA 87 (825)
T ss_pred eeeeeccccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch--hhhcc
Confidence 33445543 6677899999999998889999999999999999998877788889999999999998753 34566
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCE
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
+..+++|++||+++.+.++++.||...+.++.|+|.+.+.++|+.|.-+++||++...|...+..
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s--------------- 152 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS--------------- 152 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---------------
Confidence 77899999999999999999999999999999999999999999999999999986544432210
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+...+..+.|+|+|++++.+++|.++++||...|+...++..| ...
T Consensus 153 -------------------------------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~---e~~ 198 (825)
T KOG0267|consen 153 -------------------------------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH---EGK 198 (825)
T ss_pred -------------------------------CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc---ccc
Confidence 1112345789999999999999999999999999887777654 445
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+..+.|+|..-++++||.|+++++||+++-..+...+ .....|.+++|+|++..+.+|..
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCch
Confidence 6678899999999999999999999998766665544 35788999999999999999974
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=175.92 Aligned_cols=283 Identities=16% Similarity=0.280 Sum_probs=216.1
Q ss_pred eccC-CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 17 FREN-TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 17 ~~~h-~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
|+++ ...|.|+.|.++|. ++||..+|+|.||+..+....++...|..+|..++...++. + .+++.|+.|..||-.
T Consensus 241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt--l-lSGgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT--L-LSGGKDRKIILWDDN 316 (626)
T ss_pred cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc--E-eecCccceEEecccc
Confidence 4443 46799999999997 67999999999999987777777778888998887765543 3 348889999999732
Q ss_pred CCce----------------------------------------EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEee
Q psy16316 96 DNKY----------------------------------------IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135 (335)
Q Consensus 96 ~~~~----------------------------------------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd 135 (335)
-.+. ..+..||.+..+.++.+|+.++++|++.|+.+++|+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 1110 112247999999999999999999999999999999
Q ss_pred cCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
..+............++.|+|.| .++.|+..|...+.|..+.. .. ....+ ..+++.++|+|+|.+||+++.
T Consensus 397 --~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---lv--~~~~d-~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 397 --DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---LV--TIHTD-NEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred --CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce---eE--EEEec-CCceEEEEEcCCCCEEEEecC
Confidence 44555555667777888999999 99999999999999987621 22 22223 567789999999999999999
Q ss_pred CCeEEEEECC-CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee---------------EE--E
Q psy16316 216 GSIIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK---------------VC--V 277 (335)
Q Consensus 216 ~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~---------------~~--~ 277 (335)
|+.|++|.+. ++....++..+.. .++..++||+|+++|.+.|.|-.|..|....... +. .
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 9999999976 4555666555444 7889999999999999999999999995432110 00 1
Q ss_pred eCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccccc
Q psy16316 278 LDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYLS 314 (335)
Q Consensus 278 ~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~~ 314 (335)
....|..-|+.++-+....++|+|+ +.++++..+-.+
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC
Confidence 1234556677778788888999998 567777544333
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=192.15 Aligned_cols=244 Identities=19% Similarity=0.295 Sum_probs=200.4
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecC-CCeeEEeecCCCCeEEEEEcCCC-c
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA-KQAAIHASTKIDDTVRYLSLHDN-K 98 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~-~ 98 (335)
.--+++++.+|+|++||+|..-|+++|||++..+.+..+..|...+.++.++.. -...++++++.|+.|.++|+... .
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 345899999999999999999999999999998888888899999999998754 44578899999999999999765 5
Q ss_pred eEeeecCCCCCeEEEEECCCC--CEEEEeeCCCcEEEeecCCCCcee-EE----Eec--CCcceEEECCCCCEEEEEEcC
Q psy16316 99 YIRYFPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNCQG-IM----HVS--GSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~-~~----~~~--~~~~~~~~~~~~~~~~~~~~d 169 (335)
+++++-+|...|+++.|...| ..++|++.|+.|. |+........ .+ +.. ....-+..+|.-+++++++.|
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 678899999999999998877 6799999999874 4443311111 11 111 112346788999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
+.|+|||+.+.+ ....++...++....-.+..+|.|.|+++++.|+++.++|..+++|+.++.+| ..-|+.+.|.
T Consensus 618 rnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~ 692 (1080)
T KOG1408|consen 618 RNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFL 692 (1080)
T ss_pred cceEEEeccccc--eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeec
Confidence 999999998743 34555555566566667889999999999999999999999999999988775 4567889999
Q ss_pred CCCcEEEEEeCCCcEEEEECC
Q psy16316 250 PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~ 270 (335)
+|.++|++.+.||.|.||.+.
T Consensus 693 nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccchhheeecCCceEEEEECc
Confidence 999999999999999999875
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-22 Score=170.30 Aligned_cols=283 Identities=16% Similarity=0.233 Sum_probs=205.8
Q ss_pred ccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceee--eecc--cccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 18 RENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRT--VFSK--KYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+..++.|..+.|+|.+. ++++++. +.+..|+.+.+...+. ++.. +.-|.+++|.++++ ..++..++.|.+|
T Consensus 197 k~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw 272 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIW 272 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEE
Confidence 34567789999999764 6666664 6899999988765432 2222 23477788877665 3456678999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc-----------eeEEE---------------
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC-----------QGIMH--------------- 146 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~-----------~~~~~--------------- 146 (335)
+..+.+..+...+|.+.|.+++...+|. |+||+.|..|..||-.-.+. ++.+-
T Consensus 273 ~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 273 SKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred eCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 9999888887779999999999999885 56699999999999432110 00000
Q ss_pred ---------------ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEE
Q psy16316 147 ---------------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYIL 211 (335)
Q Consensus 147 ---------------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 211 (335)
+....--.+.+|+...+++++.|+.+++|+-. +..+. . ....+..++.|+|.| .++
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~---k~~wt-~----~~~d~~~~~~fhpsg-~va 422 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH---KLEWT-K----IIEDPAECADFHPSG-VVA 422 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC---ceeEE-E----EecCceeEeeccCcc-eEE
Confidence 00001123567888899999999999999821 21121 1 112234678999999 899
Q ss_pred EEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC-CeeEEEeCCCCCCCeEEEE
Q psy16316 212 ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK-GFKVCVLDADHPSPVQTIQ 290 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~-~~~~~~~~~~h~~~v~~v~ 290 (335)
+|+..|..-+.|.++...+.. |.. ...+..+.|+|+|.+||.|+.|+.|+||.++. +.+......-|..+|+.+.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~---~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLD 498 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTI---HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLD 498 (626)
T ss_pred EeeccceEEEEecccceeEEE---Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEee
Confidence 999999999999998655443 222 45677899999999999999999999999874 4555444444568999999
Q ss_pred eCCCCcEEEeee--ceeEEecccccccccC
Q psy16316 291 FNPKFNMMASAC--TNLAFWIPTYLSNHQE 318 (335)
Q Consensus 291 ~sp~~~~~~s~~--~~~~~w~~~~~~~~~~ 318 (335)
||+|++++.+-+ ..+.+|.+..+.+...
T Consensus 499 wS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 499 WSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred ecCCCceEEeccCceEEEEEccccCcccce
Confidence 999999998665 5689996666655544
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=186.35 Aligned_cols=293 Identities=19% Similarity=0.299 Sum_probs=204.1
Q ss_pred EEEEECC---CCCEEEEecCCCeEEEEEccCCcc------eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 25 TSIDYSA---DGLLLISCSEDDQIVIYDCELGTN------KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 25 ~~v~~s~---~g~~lasgs~Dg~i~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
++..|++ ...+||.+.+||.|.++|...... ......|...+-.+.|.+. + ..+.+++.|.++++||++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg-e-~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG-E-SLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC-c-eeEEEccCCceeeeeeec
Confidence 3477875 345899999999999999875432 2445668888889999883 3 334455569999999999
Q ss_pred CCceEee--ecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCc---------eeEEEec---------------
Q psy16316 96 DNKYIRY--FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNC---------QGIMHVS--------------- 148 (335)
Q Consensus 96 ~~~~~~~--~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~---------~~~~~~~--------------- 148 (335)
+.+++.. +.||...|.+++|.|.+ ..+++|+.||.|.|||++-... ....+..
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 9988876 89999999999999976 5789999999999999874320 0000111
Q ss_pred --------CCcceEEECCCCCEEEEEEc-CCeEEEEEccCCCC----Ccee--eEEeccCCCccceEEEEccCCCEEEEE
Q psy16316 149 --------GSRPIAAFDPEGLIFGVGVN-SDTIKLYDVRSFDK----GPFS--NFKFAAEKECDWTGIKFSADGKYILIS 213 (335)
Q Consensus 149 --------~~~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~----~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~ 213 (335)
..+. +.+-.|...+++++. |+.||+||++.... .+.. .+.........+.++..+..|.+|.+.
T Consensus 211 kA~s~ti~ssvT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 211 KAASNTIFSSVT-VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred ccccCceeeeeE-EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 0111 223456667777766 99999999986321 1111 111111122345678888899999999
Q ss_pred eCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 214 TNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 214 ~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
+.|+.|+.|++.+... +..+.++.+. ..-..-..+|++.+|++|+.|...++|.+.+.+....+-.+|.-.|+.|+|
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW 368 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence 9999999999986532 2222232221 122234689999999999999999999998877666666789999999999
Q ss_pred CCC--CcEEEee-eceeEEecc-cccccccCCCC
Q psy16316 292 NPK--FNMMASA-CTNLAFWIP-TYLSNHQEPDT 321 (335)
Q Consensus 292 sp~--~~~~~s~-~~~~~~w~~-~~~~~~~~~~~ 321 (335)
.|. .+++++. +..+++|.+ +..+..+.++.
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk 402 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNGLEEIYAADK 402 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCchhhcccccc
Confidence 875 4554442 246899966 44444444443
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=177.85 Aligned_cols=249 Identities=18% Similarity=0.297 Sum_probs=190.5
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
-.+.|++|.|+|.-..|++|+.|++++||-++... .+..+.-...++...+|.+.+...+ ++++.-.....||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i-~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVI-FTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEE-EecccceEEEEeecccc
Confidence 35779999999999999999999999999876443 3455666678888888888665444 34445566777777655
Q ss_pred ceEe-------------ee-----------cC--------------------CCCCeEEEEECCCCCEEEEeeCCCcEEE
Q psy16316 98 KYIR-------------YF-----------PG--------------------HTKKVNSLCLSPIDDTFISGSYDKTVRL 133 (335)
Q Consensus 98 ~~~~-------------~~-----------~~--------------------H~~~V~~~~~~~~~~~l~s~s~D~~i~v 133 (335)
+..+ .| .| -.+.|..++|+.++..|+.++.+|.|.+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 4311 11 11 1356888999999999999999999999
Q ss_pred eecCCCCceeEEEecCCcc--eEEECCCCCEEEEEEcCCeEEEEEccCCC-CCceeeEEeccCCCccceEEEEccCCCEE
Q psy16316 134 WDLRSPNCQGIMHVSGSRP--IAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFSNFKFAAEKECDWTGIKFSADGKYI 210 (335)
Q Consensus 134 Wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 210 (335)
||+++..|+..+...+.+. .++.++++.++|+|+..|.|.|||..+-. .....+.+........++.++|+||...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 9999999988776666554 45667899999999999999999976421 11111112222334567889999999999
Q ss_pred EEEeCC--CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 211 LISTNG--SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 211 ~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
++++.. ..+++..+.+...++.+.......+.+.+++|||.+.+||.|.++|++.+|.+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 988764 56999999988777777666666778999999999999999999999999976
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=166.23 Aligned_cols=237 Identities=16% Similarity=0.224 Sum_probs=184.2
Q ss_pred ecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC--EEEEeeCCCcEEEeecC
Q psy16316 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLR 137 (335)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~i~vWd~~ 137 (335)
..|...+++++.. ...+++++.|.+|++||+.....+..+..|.+.|+++.|.+... .|++|+.||.|.+|+..
T Consensus 40 ~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 4566677777764 45788999999999999999999999999999999999998754 89999999999999998
Q ss_pred CCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 138 SPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 138 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
...+...+ .+.+.+.-++++|.+++..+.+.|+.+++||+-.++..-..+++.. . .-+.|+|.|.++++...+
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~----a--t~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK----A--TLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc----c--eeeEEcCCCCEEEEEecc
Confidence 87766555 3445577889999999999999999999999987654333222211 1 238999999998887655
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe--CCC
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF--NPK 294 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~--sp~ 294 (335)
.|-+|.+.+-...+++... ..+.++.|- ++..|++|++|+.|.+||.++......+ .+|+.+|.++.+ .|.
T Consensus 190 -~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPE 262 (362)
T ss_pred -EEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCC
Confidence 4788888876655554321 224445553 4678999999999999999876666555 569999999996 677
Q ss_pred CcEEEeee--ceeEEeccccc
Q psy16316 295 FNMMASAC--TNLAFWIPTYL 313 (335)
Q Consensus 295 ~~~~~s~~--~~~~~w~~~~~ 313 (335)
+.+|++++ |-|++|..+-.
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEEeccCceEEEEEcccc
Confidence 88999887 45888966544
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=172.20 Aligned_cols=255 Identities=16% Similarity=0.282 Sum_probs=186.8
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEc------cC--------Cc--------------------
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDC------EL--------GT-------------------- 54 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~------~~--------~~-------------------- 54 (335)
++....-+|.||.+.|+++.|+++|.+++++|-|++..||.. .. ++
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 455666789999999999999999999999999999999962 11 00
Q ss_pred ------ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC
Q psy16316 55 ------NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128 (335)
Q Consensus 55 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D 128 (335)
.+..+.+|...|.++.|..... -+.++++|.+..+||++++..+..+.||....+.++-+|..++++|.|.|
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD 335 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC
Confidence 0111223333344444443333 34456789999999999999999999999999999999999999999999
Q ss_pred CcEEEeecCCCCc-eeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC
Q psy16316 129 KTVRLWDLRSPNC-QGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD 206 (335)
Q Consensus 129 ~~i~vWd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 206 (335)
.+.|+||++..-. ..++ .+...+....|..+. .+++|++|.+||+||++.++. ++..+. ....++.++.+..
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs-plATIR----tdS~~NRvavs~g 409 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS-PLATIR----TDSPANRVAVSKG 409 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccC-cceeee----cCCccceeEeecC
Confidence 9999999984321 2222 223334555666554 467899999999999998754 333332 2345677899998
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeec-ccccCCCCceEEEEcCCCc--EEEEEeCCCcEEEEECCC
Q psy16316 207 GKYILISTNGSIIRTFDAYNGQCLQTLA-GFLNNKGCPLEASFTPDSK--YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 207 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~--~l~tgs~dg~v~iwd~~~ 271 (335)
++.++.-.+++.|++||+......+..+ ...+|..-+.+++|..+.. -|.+++-|..+.-|++..
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 9999999999999999997554332221 2334555577888876543 588999999999998764
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-23 Score=175.94 Aligned_cols=252 Identities=19% Similarity=0.317 Sum_probs=180.6
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC--ce--------EeeecCCCCCeEEEEECCCC-CEEEEeeCCCc
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN--KY--------IRYFPGHTKKVNSLCLSPID-DTFISGSYDKT 130 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~--------~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~ 130 (335)
|...|..+++.|. +..++++....+.+.|||...- .. -..+.||.+.=.+++|++.. -.|++++.|++
T Consensus 123 h~gEVnRaRymPQ-np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 123 HDGEVNRARYMPQ-NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred CCccchhhhhCCC-CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4455666666654 3456777788899999998532 11 12688999988899999865 47999999999
Q ss_pred EEEeecCCCCc----e---eEE-EecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEE
Q psy16316 131 VRLWDLRSPNC----Q---GIM-HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201 (335)
Q Consensus 131 i~vWd~~~~~~----~---~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (335)
|++||+..... . ..+ .+...+.-++|++ +..+|+++++|+.+.|||+|+....+ ......+...+.++
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~---~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP---SHSVKAHSAEVNCV 278 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC---cccccccCCceeEE
Confidence 99999976433 1 111 2233344567776 46789999999999999999631111 12223456678999
Q ss_pred EEccCCCE-EEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCe------
Q psy16316 202 KFSADGKY-ILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGF------ 273 (335)
Q Consensus 202 ~~s~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~------ 273 (335)
+|+|.+.+ ||+++.|++|++||+++... .+.....|...+..+.|||.. ..||+.+.|+++.+||+..-.
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 99997655 56677899999999998653 333345567778999999964 689999999999999986421
Q ss_pred -------eEEEeCCCCCCCeEEEEeCCCCcE-EEeee--ceeEEecc-cccccccCC
Q psy16316 274 -------KVCVLDADHPSPVQTIQFNPKFNM-MASAC--TNLAFWIP-TYLSNHQEP 319 (335)
Q Consensus 274 -------~~~~~~~~h~~~v~~v~~sp~~~~-~~s~~--~~~~~w~~-~~~~~~~~~ 319 (335)
++.....+|+..|.+.+|+|+.+. ++|+. ..+.||.. +..-+.+.+
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~~e~~ 413 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYNPEDP 413 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccCcccc
Confidence 123567899999999999999876 44553 45899975 344444433
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=182.92 Aligned_cols=292 Identities=18% Similarity=0.237 Sum_probs=209.2
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce--ee-----eecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--RT-----VFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.+.||++.|.++.|+|.+..|+|+|.|+++.+|..+...-+ .. .-+...+...+-|.++. .++.+.+..|.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~--~~ii~~g~~Gg 339 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS--NVIIAHGRTGG 339 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC--CEEEEecccCc
Confidence 45699999999999999999999999999999987654211 11 11233456677777765 34555667888
Q ss_pred EEEEEcCCC---ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce-eEE----EecCCcceEEECCCC
Q psy16316 89 VRYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ-GIM----HVSGSRPIAAFDPEG 160 (335)
Q Consensus 89 i~~~~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-~~~----~~~~~~~~~~~~~~~ 160 (335)
.++|.-... .....+.||.+.|+.++|+|.|.+|+|+|.|-+=|++-.-..+.. ..+ .++....++.+-+..
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999983222 233457899999999999999999999999999999965422211 111 133445566666656
Q ss_pred CEEEEEEcCCeEEEEEccCC------------------------------CCCceee------------E--E-------
Q psy16316 161 LIFGVGVNSDTIKLYDVRSF------------------------------DKGPFSN------------F--K------- 189 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~------------------------------~~~~~~~------------~--~------- 189 (335)
..|++|.+...+++|+.... ...+... . .
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 77888888888999884220 0000000 0 0
Q ss_pred --------------------eccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 190 --------------------FAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 190 --------------------~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
...+|-.++.+++.+|+++++|+++.. ..|++|+..+......+.+ |.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~---HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG---HSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc---cceEEE
Confidence 000122345689999999999998754 4599999998887777765 445688
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeE---EEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKV---CVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~---~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
.++||||+++|++.|.|+++.+|+..+.... ......|+.-|+++.|+|+..++|+++ ..+++|....
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 9999999999999999999999987643221 112356999999999999999999997 5699996533
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=179.89 Aligned_cols=252 Identities=20% Similarity=0.279 Sum_probs=184.8
Q ss_pred HhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee------------eecccccceEEEEecCC
Q psy16316 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT------------VFSKKYGVDLIRFTHAK 75 (335)
Q Consensus 8 ~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 75 (335)
+++|+.++--..| .|+++.|++.|..++..+-...++|+|.+.-+..+. -.+|...+.+.+|.|..
T Consensus 203 ~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 203 MRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred chhhhccCccccc--ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc
Confidence 4455544434444 689999999999888888888999999765433222 23566678888898875
Q ss_pred CeeEEeecCCCCeEEEEEcCCCc-eEeeec-----CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNK-YIRYFP-----GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---- 145 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~-----~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---- 145 (335)
.. .+.+++.|+++|+|++...+ ..++++ +-.-++++|+|+++++++++|..||+|.+||.+.......+
T Consensus 281 k~-~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 281 KE-EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred cc-ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee
Confidence 54 44567789999999997643 333443 34457899999999999999999999999998654332222
Q ss_pred -Eec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC------CC
Q psy16316 146 -HVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN------GS 217 (335)
Q Consensus 146 -~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------~~ 217 (335)
|.. ..+.++.|+++|+++++-+.|+++++||+|.+.. ++..... ......-+.++|||+.+++++|+. -+
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk-pL~~~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK-PLNVRTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeecccccc-chhhhcC-CCccCCCCccccCCCceEEEecccccCCCCCc
Confidence 222 2567899999999999999999999999997543 2211110 111122345789999999998864 36
Q ss_pred eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
.+.+||..+.+.+.++.- ....+..+.|+|.=+.|..|+.||.+++|
T Consensus 438 ~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEEeccceeeEEEecC---CCceEEEEeecchhhheeeecCCCceEEE
Confidence 799999998887776642 23457789999998889999999999997
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=163.40 Aligned_cols=285 Identities=18% Similarity=0.317 Sum_probs=207.6
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc------------eeeee-cccccceEEEEe-----cCCCeeEEee
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN------------KRTVF-SKKYGVDLIRFT-----HAKQAAIHAS 82 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~------------~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~ 82 (335)
......+.|+|||.-+++-+.|..+.+|++....- ...+. .....|...+|. ..+...+.++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 34466899999999999999999999999853210 00111 112235555664 2345567888
Q ss_pred cCCCCeEEEEEcCCCceEeeecC--CCC---CeEEEEECCCCCEEEEeeCCCcEEEeec-CCCCceeEE--------Eec
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPG--HTK---KVNSLCLSPIDDTFISGSYDKTVRLWDL-RSPNCQGIM--------HVS 148 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~--H~~---~V~~~~~~~~~~~l~s~s~D~~i~vWd~-~~~~~~~~~--------~~~ 148 (335)
++.+.-|.+||..+++....+++ |.+ ...|++|+|||.+|++| ..++||++|+ +.++-..++ ...
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 88999999999999998877765 333 45699999999999877 6889999999 555432221 234
Q ss_pred CCcceEEECCCC-CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCC
Q psy16316 149 GSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYN 226 (335)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~ 226 (335)
+.+.+.+++|.. ..+++|+....+-|+.-.. ..|+ ....++...|+.+.|.++|+.|.+|.. +..|-.||++.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl---~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPL---QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCC--CCce---eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 556677899965 4889999888888876543 2233 334467778899999999999999875 56799999986
Q ss_pred C-eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC-CeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 227 G-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK-GFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 227 ~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
. ..+-.+.+|......-+-....|++++||+|+.||.|++||+.+ +...... ..|...|+.|+++|--+++|++++.
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccccccccceecCcccceeeeccCc
Confidence 4 34455555554333223456789999999999999999999987 5545444 4588999999999999999999887
Q ss_pred eEEecccc
Q psy16316 305 LAFWIPTY 312 (335)
Q Consensus 305 ~~~w~~~~ 312 (335)
-.+-.++.
T Consensus 362 r~f~~~~d 369 (406)
T KOG2919|consen 362 RIFKYPKD 369 (406)
T ss_pred eeecCCCc
Confidence 54444433
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=182.79 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=191.7
Q ss_pred ccHHHHhccccee----eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee--eecccccceEEEEecCCC
Q psy16316 3 LTDNVIRSYKVAK----LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQ 76 (335)
Q Consensus 3 ~~~~~~~~~~~~~----~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 76 (335)
|+|..=++|++.+ .+..|.++|+.+.|-|-...|++++-|.++++||++++++... ..+|...+...+|.+. +
T Consensus 78 l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n 156 (720)
T KOG0321|consen 78 LFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-N 156 (720)
T ss_pred eecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-C
Confidence 4444455666332 2457999999999999667899999999999999999988776 7889999999999886 4
Q ss_pred eeEEeecCCCCeEEEEEcCCCce---------------------------EeeecCCCCCeEE---EEECCCCCEEEEee
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKY---------------------------IRYFPGHTKKVNS---LCLSPIDDTFISGS 126 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~---------------------------~~~~~~H~~~V~~---~~~~~~~~~l~s~s 126 (335)
..++++|+.|+.+.+||...... +..-++|...|.+ +-+..|...|+|+|
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc
Confidence 56778899999999999864330 1112245555655 55556778899988
Q ss_pred C-CCcEEEeecCCCCceeEEEe------------cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC
Q psy16316 127 Y-DKTVRLWDLRSPNCQGIMHV------------SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 127 ~-D~~i~vWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
. |+.|||||++...+...... ......+..+..|.++.+.+.|+.|.+|++++....+...+.....
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~ 316 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN 316 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc
Confidence 7 99999999997665432211 0112234566777777777779999999999876666554433222
Q ss_pred CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCC
Q psy16316 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~ 272 (335)
... +..-..+||+.++++++.+...++|.+.+.+.--.+ ..+|...+.+++|.|.. .-+||+++|-+++||++..+
T Consensus 317 ~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~--l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 317 SSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL--LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cee-eeeeecCCCCceEeccCCCcceeeeeecCccCChhh--hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 221 223457999999999999999999998876532221 23344556778888743 34777799999999998765
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=181.76 Aligned_cols=302 Identities=24% Similarity=0.386 Sum_probs=228.3
Q ss_pred HHhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee-ecccccceEEEEecCCCeeEEeecCC
Q psy16316 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 7 ~~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.++.+++.+.|.+|.|.|..|.|+..|..|+|||+|..|.+||...+.....+ .+|...+-...|.|...-.-+++++.
T Consensus 128 ~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 128 FVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred HHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 34678888999999999999999999999999999999999999988766544 34666665566777665555667778
Q ss_pred CCeEEEEEcCCCceE---eeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEec---C----CcceE
Q psy16316 86 DDTVRYLSLHDNKYI---RYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVS---G----SRPIA 154 (335)
Q Consensus 86 d~~i~~~~~~~~~~~---~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~---~----~~~~~ 154 (335)
|+.+|+-.+...+.+ ..+-.|.++|..++..|.. ..|.|++.|+.+.-.|+++......+... . ....+
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 999998776543332 3355699999999999976 57999999999999999987654433211 1 11235
Q ss_pred EECCCC-CEEEEEEcCCeEEEEEccCCCCCcee-------eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy16316 155 AFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFS-------NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 155 ~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+.+|.. ..+++++.|..+++||.+........ +..........+++++++.++.-|+++-.|-.|++|...-
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 566755 48999999999999999875433111 1111123345689999999999999999999999996432
Q ss_pred --C----------eeeee-ecccccCCCCceEEE-EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 227 --G----------QCLQT-LAGFLNNKGCPLEAS-FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 227 --~----------~~~~~-~~~~~~~~~~v~~~~-~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
| ..++. +++|.+.. .|..+- |.|...|+++||.-|.|.||+..++..+..+.+++. -|+||.=|
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~-TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSR-TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhccccccc-ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 2 12233 55665543 366664 689999999999999999999988887777766554 99999999
Q ss_pred CCCcEEEeee--ceeEEecc
Q psy16316 293 PKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 293 p~~~~~~s~~--~~~~~w~~ 310 (335)
|--++||+.+ .+|+||-+
T Consensus 446 P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCCchhhccCCccceeeecC
Confidence 9999999986 67999987
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=162.69 Aligned_cols=300 Identities=15% Similarity=0.290 Sum_probs=207.3
Q ss_pred hcccceeee-ccCCccEEEEEECC-----CCCEEEEecCCCeEEEEEccCCcceeeeec-----ccccceEEEEecCCC-
Q psy16316 9 RSYKVAKLF-RENTDKITSIDYSA-----DGLLLISCSEDDQIVIYDCELGTNKRTVFS-----KKYGVDLIRFTHAKQ- 76 (335)
Q Consensus 9 ~~~~~~~~~-~~h~~~V~~v~~s~-----~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~- 76 (335)
++|+....+ ..|+.+|..+.|++ +...+|++|.+ .+.+|++.....++.+.. +......++|..+..
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 356666555 46999999999994 34678888766 678888765543222211 334567788876644
Q ss_pred -eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE----ecCC
Q psy16316 77 -AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH----VSGS 150 (335)
Q Consensus 77 -~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~----~~~~ 150 (335)
..+++.++.-|.|++.|+.++++...+.||...|+.+.++|+. ++++|||.|.+||+|++++..|+.++. +.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 3566667788999999999999999999999999999999975 789999999999999999999987762 3344
Q ss_pred cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCce--eeEEecc--------C-------------CCccceEEEEccCC
Q psy16316 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF--SNFKFAA--------E-------------KECDWTGIKFSADG 207 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--~~~~~~~--------~-------------~~~~~~~~~~s~~~ 207 (335)
+-.+.|+++|..+++++.|.++++|++...+-... ..+.+.. . +...|.++.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 45678999999999999999999999973210000 0000000 0 00011112221 4
Q ss_pred CEEEEEeCCCeEEEEEC-CCCee---------eeeecccccCCC---CceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 208 KYILISTNGSIIRTFDA-YNGQC---------LQTLAGFLNNKG---CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~-~~~~~---------~~~~~~~~~~~~---~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
+++++-+.++.|..|.. .-++. ..++.+...... .....+|.|-.++||.|.+.|+|++||+.....
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 67788777888999987 21111 111111111111 223457788889999999999999999976543
Q ss_pred E---EEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEeccc
Q psy16316 275 V---CVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 275 ~---~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~ 311 (335)
. ......-...|.+.+|+.++.+++..+.+..+|-.+
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 111222346899999999999999998888888554
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=176.04 Aligned_cols=276 Identities=13% Similarity=0.195 Sum_probs=212.2
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee-----ecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-----FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.|.+-|.++.+|...+++.||+. |.|+|||+........+ ....+-+..|...+++...+ .++--.++-+||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLi--vGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLI--VGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEE--eccccceeeeee
Confidence 58888999999999999999986 57999999765432221 12234466677777765544 344567899999
Q ss_pred cCCCceE--eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCC
Q psy16316 94 LHDNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 94 ~~~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
+...... ..+..-.-.+.+++.+||.+..+++..||.|+|||+.....++.+ .+.....++.++++|..+-+|+-|+
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 9765432 223222345678899999999999999999999999987666544 2344567888999999999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
+|+-||+|..+.... .+-..++.++...|++.++++|..++.+.+......+... + ..|..||+++.|.+
T Consensus 574 tvRcWDlregrqlqq------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-l---hlheScVLSlKFa~ 643 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQ------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-L---HLHESCVLSLKFAY 643 (705)
T ss_pred ceeehhhhhhhhhhh------hhhhhhheecccCCCccceeeecccCcEEEEecCCcccee-e---cccccEEEEEEecc
Confidence 999999997543211 1223456788899999999999999999888776544322 2 23678999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece--eEEec
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN--LAFWI 309 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~--~~~w~ 309 (335)
-|+++++.+.|.-+..|...-|..+... ....+|.++..|-+.+++++|+++ ..+|+
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeec--cccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 9999999999999999999888877654 357899999999999999999876 45554
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=163.31 Aligned_cols=246 Identities=19% Similarity=0.309 Sum_probs=182.3
Q ss_pred ccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCC-eeEEeecCCCCeEEEEEcC
Q psy16316 18 RENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ-AAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 18 ~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~ 95 (335)
.+|.-.|..+-|=| |..+|.|+|-|.+++|||+.+....-. +.-...|+.-+++|-.. ..+++.+..|-.|++.|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE-eecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47899999999998 557999999999999999987654332 33344555556655443 5678888889999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCC-CceeEEEe---------------cCCcceEEECC
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSP-NCQGIMHV---------------SGSRPIAAFDP 158 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~-~~~~~~~~---------------~~~~~~~~~~~ 158 (335)
+|.+...+.||.+.|.++.|+|... .|+|||.||.||+||++.. .|..++.. .+....+++..
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 9999999999999999999999876 5789999999999999865 34433321 11223467889
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC-CCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-KECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
++.++++++.|..+++|+..+++.. ..++..... ..... .-+. +.+...++.--.++.+.++++.++..++.+..|
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~nt-l~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNT-LREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred cchhhhhccCccceEEeecccCccc-ccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 9999999999999999998765422 111111111 00000 0122 233334444455688999999999999998876
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
. ..+.+.++-|+-+...+|+.|+.+..|-.
T Consensus 335 ~---k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 L---KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred c---ceeeEEeecCchhhhhccccCCccccccc
Confidence 3 34567899999999999999999999976
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-23 Score=181.77 Aligned_cols=227 Identities=19% Similarity=0.264 Sum_probs=180.7
Q ss_pred eEEeecCCCCeEEEEEcCCCc------eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC--CceeEE-Eec
Q psy16316 78 AIHASTKIDDTVRYLSLHDNK------YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP--NCQGIM-HVS 148 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~--~~~~~~-~~~ 148 (335)
..+.+++.|+.|++|++.... .+..++.|.+-|+.+.....++.|+|+|.|-+|++|+.... -|...+ .+.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 367889999999999985432 46778899999999999999999999999999999999876 455444 233
Q ss_pred CCcceEEE-CCCCCEEEEEEcCCeEEEEEccCCCCCcee-----eEE-eccCCCccceEEEEccCCCEEEEEeCCCeEEE
Q psy16316 149 GSRPIAAF-DPEGLIFGVGVNSDTIKLYDVRSFDKGPFS-----NFK-FAAEKECDWTGIKFSADGKYILISTNGSIIRT 221 (335)
Q Consensus 149 ~~~~~~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i 221 (335)
.-+.+++. .++..++|+|+-|+.|++||++.+...... ... ...+....+.+++.++.|..+++|+..+.+++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 33445555 678889999999999999999864221111 111 11144556788999999999999999999999
Q ss_pred EECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
||.++.+.+-.+++|. .-|..+-.++||..++++|.||+|++||+.-.+.+.++ ..|...|+++.-+|+...+-+|
T Consensus 198 wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred eccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-EeccCceEEEeeCCCcceEEec
Confidence 9999998888887654 45678999999999999999999999999877666666 4588899999999999999999
Q ss_pred eceeEEe
Q psy16316 302 CTNLAFW 308 (335)
Q Consensus 302 ~~~~~~w 308 (335)
+.+..|+
T Consensus 274 ~rd~~i~ 280 (735)
T KOG0308|consen 274 GRDGNIY 280 (735)
T ss_pred CCCCcEE
Confidence 8665554
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=177.06 Aligned_cols=237 Identities=18% Similarity=0.239 Sum_probs=181.7
Q ss_pred ceeeeccCCccEEE-EEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 13 VAKLFRENTDKITS-IDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 13 ~~~~~~~h~~~V~~-v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
..+.|.+|.+.|.+ +.|-+ ++-++++|+.|.+|.+|.+........+.+|+..|.+++...+.. +.++++|.+++
T Consensus 49 ~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~Tak 125 (745)
T KOG0301|consen 49 ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAK 125 (745)
T ss_pred cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc---eEecccccceE
Confidence 34668889999988 88885 555799999999999999999999999999999988887654433 67899999999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcC
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
+|-.. ++...++||+..|+++...|.+ .++|||.|++||+|.- +.+..++ .+...+..+++-+ ...|++|+.|
T Consensus 126 vW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~~flScsND 199 (745)
T KOG0301|consen 126 VWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DSHFLSCSND 199 (745)
T ss_pred Eecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CCCeEeecCC
Confidence 99754 4555699999999999999987 8999999999999974 4444443 1222233333333 3457789999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
|.|++|++... .. .....+..-+.+++..+++..++++++|+++++|+.. +|.+.+.. ...++.++.+-
T Consensus 200 g~Ir~w~~~ge---~l---~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L 268 (745)
T KOG0301|consen 200 GSIRLWDLDGE---VL---LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVL 268 (745)
T ss_pred ceEEEEeccCc---ee---eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEe
Confidence 99999998431 11 1223444556778888889999999999999999987 56665542 23467777777
Q ss_pred CCCcEEEEEeCCCcEEEEECC
Q psy16316 250 PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~ 270 (335)
++|. +++|+.||.||||...
T Consensus 269 ~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 269 LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eCCC-EEEeccCceEEEEEec
Confidence 7765 6788889999999875
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=177.65 Aligned_cols=254 Identities=14% Similarity=0.229 Sum_probs=198.9
Q ss_pred ecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC
Q psy16316 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 138 (335)
+.|..+...++|.++++ .+.+++.|+.|++|+.... ....++.-|...|.+++.. .+.|++|+.+++|.++.+..
T Consensus 10 yaht~G~t~i~~d~~ge--fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE--FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCC--EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 45677788888888877 6677778999999987655 4445554477888888764 45899999999999999988
Q ss_pred CCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC
Q psy16316 139 PNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS 217 (335)
Q Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~ 217 (335)
+.....+ ...-....++++.+|.+++.|++|-.|++.++.... .......+..++.++.|+|++++||+++.||
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----hheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 7665333 445556778999999999999999999999886532 1233456678899999999999999999999
Q ss_pred eEEEEECCCCeeeeeecccccC-----CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC-CCCeEEEEe
Q psy16316 218 IIRTFDAYNGQCLQTLAGFLNN-----KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH-PSPVQTIQF 291 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h-~~~v~~v~~ 291 (335)
.|++||+.++.+..++.+.... ...+..++|+|+|..|+....|+.|++|+...+.....+...+ ...+..++|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 9999999999887777653222 2234568999999999999999999999998887776665444 344999999
Q ss_pred CCCCcEEEeee--ceeEEecccccccccCCCCc
Q psy16316 292 NPKFNMMASAC--TNLAFWIPTYLSNHQEPDTI 322 (335)
Q Consensus 292 sp~~~~~~s~~--~~~~~w~~~~~~~~~~~~~~ 322 (335)
+|+|.|+|+++ +-|.+|+.+..+.|+.-+.|
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~V 273 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHERHEFKRAV 273 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchhcccccee
Confidence 99999999997 45999998765556555444
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=185.48 Aligned_cols=203 Identities=18% Similarity=0.304 Sum_probs=161.6
Q ss_pred ceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+.+.|.+|++.|+++.|++.. .+|+|||.||+|++||+.......+.++....+..|.|++.. ...++++...|.+++
T Consensus 125 ~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lql 203 (839)
T KOG0269|consen 125 LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQL 203 (839)
T ss_pred hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC-CceEEEecCCceEEE
Confidence 345899999999999999866 689999999999999999998888888888899999999875 455667778899999
Q ss_pred EEcCC-CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce--eEEEecCCcceEEECCCCC-EEEEEE
Q psy16316 92 LSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ--GIMHVSGSRPIAAFDPEGL-IFGVGV 167 (335)
Q Consensus 92 ~~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~ 167 (335)
||++. .++.+.+.+|+++|.|+.|+|++.+|||||.|++|+|||+.+.+.. .+++....+..+.|.|+.. .+++++
T Consensus 204 WDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 204 WDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred eeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhh
Confidence 99975 5677889999999999999999999999999999999999866543 3445555667788999865 455554
Q ss_pred --cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEE
Q psy16316 168 --NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIR 220 (335)
Q Consensus 168 --~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~ 220 (335)
.|..|++||++. |+.++....++...++.++|.. |-..+.+++.|+++.
T Consensus 284 mv~dtsV~VWDvrR----PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRR----PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccccceEEEEeecc----ccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 577999999975 4444444455666677888865 334455666666543
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-20 Score=153.08 Aligned_cols=238 Identities=16% Similarity=0.232 Sum_probs=183.7
Q ss_pred cccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCC
Q psy16316 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPN 140 (335)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~ 140 (335)
...+..+.|+.+++..+. ++.|+++++||..+++.++++..+.-.|..+.|....+.++.++. |.+||.-++.+.+
T Consensus 14 ~~~i~sl~fs~~G~~lit--ss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLIT--SSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEE--ecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 456788888877765444 557899999999999999999888889999999877777777776 9999999999998
Q ss_pred ceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeE
Q psy16316 141 CQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSII 219 (335)
Q Consensus 141 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i 219 (335)
.++.+ .+...+..+..+|-+..|.+++.|++|++||+|.... . .+...... ...+|+|+|-++|++.....|
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c--q-g~l~~~~~----pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC--Q-GLLNLSGR----PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--c-eEEecCCC----cceeECCCCcEEEEecCCCeE
Confidence 88766 3344456678899999999999999999999995321 1 11111111 247999999999999988899
Q ss_pred EEEECCCCe--eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCe---EEEEeCCC
Q psy16316 220 RTFDAYNGQ--CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPV---QTIQFNPK 294 (335)
Q Consensus 220 ~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v---~~v~~sp~ 294 (335)
++||++... ...++.--.+.......+.|||||++|+.+...+.+++.|.-+|.....+. .|+..- .+..|.|+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCC
Confidence 999998652 233332211223345679999999999999999999999999998777663 344432 46789999
Q ss_pred CcEEEeee--ceeEEecc
Q psy16316 295 FNMMASAC--TNLAFWIP 310 (335)
Q Consensus 295 ~~~~~s~~--~~~~~w~~ 310 (335)
++++.+|+ +++.+|++
T Consensus 244 s~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CcEEEEecCCCcEEEEEc
Confidence 99999886 56888876
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=168.11 Aligned_cols=225 Identities=18% Similarity=0.278 Sum_probs=186.1
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC-----
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH----- 95 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~----- 95 (335)
.++|.|+.-+|+|.+|+.|+..|.|.+|.+.+|..+..+..|=..++++.|+.++. ++.+++.|+.|.+|.+-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeeccc
Confidence 57899999999999999999999999999999998888877878899999987654 66788899999999762
Q ss_pred ----CCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC
Q psy16316 96 ----DNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 96 ----~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
+.++...+.+|+-+|+.+...+. ...|+|+|.|.++|+||+..+.....+.......+++++|.+..+.+|+.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCc
Confidence 34567889999999999988765 368999999999999999999888877788888889999999999999999
Q ss_pred CeEEEEEccCCCC--C---------ceeeEEeccCCC--ccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 170 DTIKLYDVRSFDK--G---------PFSNFKFAAEKE--CDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 170 ~~v~iwd~~~~~~--~---------~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
|.|.+.++..... . ...++....++. ..+++++++-||..|++|+.|+.|.+||+.+.++++++..
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~- 317 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT- 317 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-
Confidence 9999988764321 0 011222223333 3789999999999999999999999999999999998864
Q ss_pred ccCCCCceEEEEcC
Q psy16316 237 LNNKGCPLEASFTP 250 (335)
Q Consensus 237 ~~~~~~v~~~~~sp 250 (335)
..+.|..+.+.|
T Consensus 318 --~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 318 --SKGPVTNLQINP 329 (476)
T ss_pred --hccccceeEeec
Confidence 345566676644
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=186.98 Aligned_cols=197 Identities=21% Similarity=0.339 Sum_probs=169.5
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
....|.+|..+|.+|.|+++..+|+.|+.||+||+||++.++..+++.+|...+..+.|.|... +.++++.|..+.+|
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIW 139 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE--Eeccccccccceeh
Confidence 3446899999999999999999999999999999999999999999999999999999988655 44888899999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
|.+...+...+.+|...|.++.|+|+|+++++|+.|.++++||+..++....+. +.+....+.++|..-+++.|+.|++
T Consensus 140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 999999999999999999999999999999999999999999999888776664 4555666779999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
+++||++++. -+.........+.+.+|+|+++.+++|...
T Consensus 220 v~f~dletfe-----~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 220 VRFWDLETFE-----VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeeeccceeE-----EeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999998532 111112224567889999999998887554
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-21 Score=156.37 Aligned_cols=237 Identities=18% Similarity=0.220 Sum_probs=174.7
Q ss_pred cccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce
Q psy16316 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142 (335)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 142 (335)
+..++.+.|.+.++..++ +++|+++++|++........++ |..++.+++|.+ ...+++|+.||.|+..|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLv--ssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLV--SSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEE--EeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 567899999965554443 3499999999999886666665 899999999988 568999999999999999988776
Q ss_pred eEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 143 GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
..-.+...+.++...+....+++|+.|++|++||.|.... . .. .+....+ -+.+-.++.|++|+.++.+.+|
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--~--~~--~d~~kkV--y~~~v~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--V--GT--FDQGKKV--YCMDVSGNRLVVGTSDRKVLIY 160 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc--c--cc--cccCceE--EEEeccCCEEEEeecCceEEEE
Confidence 6666666777788888888999999999999999985111 1 11 1111123 3455668899999999999999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC---------eeEEEeCCC---CCCCeEEEE
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG---------FKVCVLDAD---HPSPVQTIQ 290 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~---------~~~~~~~~~---h~~~v~~v~ 290 (335)
|+++.......+. ..-...+.++++-|++.-+|.+|.||+|.+=.++.. ++++..... --.||++++
T Consensus 161 DLRn~~~~~q~re-S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 161 DLRNLDEPFQRRE-SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred Ecccccchhhhcc-ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 9998765432211 122344678899999888999999999887544432 233322211 123899999
Q ss_pred eCCCCcEEEeeece--eEEecccc
Q psy16316 291 FNPKFNMMASACTN--LAFWIPTY 312 (335)
Q Consensus 291 ~sp~~~~~~s~~~~--~~~w~~~~ 312 (335)
|||-...+|+|+++ +.+|.+-.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred eccccceEEecCCCceEEEccCcc
Confidence 99999999999755 78897733
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=188.84 Aligned_cols=284 Identities=18% Similarity=0.236 Sum_probs=213.3
Q ss_pred HHHhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 6 NVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 6 ~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.++++-+-.+.+.||..+|.|+.|...|.++++|++|..++||..+++.+.....+|...+...+.+. +..+.++++.
T Consensus 175 tmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~--~n~~iaaaS~ 252 (1113)
T KOG0644|consen 175 TMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS--NNTMIAAASN 252 (1113)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch--hhhhhhhccc
Confidence 46677777788999999999999999999999999999999999999999999999999988877654 3456778889
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE-----EEecCCcceEEECCCC
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI-----MHVSGSRPIAAFDPEG 160 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-----~~~~~~~~~~~~~~~~ 160 (335)
|..|++|-+..+.++.++.||++.|++++|+|-. +.+.||++++||.+-.-...+ .........+.+...+
T Consensus 253 D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 253 DKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred CceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 9999999999999999999999999999999953 788999999999872111110 1111223344566667
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
.-+.+++.|+.-..|.+.-.... ...+.-+.++.+ ..+.+++-.+-.+.+|++.+|+....+.+|
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~-----------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--- 394 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWR-----------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--- 394 (1113)
T ss_pred cccccccCCcccccchhhHhhhh-----------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc---
Confidence 77888888888777765321100 000000111111 134455556677899999999876666554
Q ss_pred CCCceEEEEcCC-CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 240 KGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 240 ~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
...+..+.+||- .+...+++.||...|||...|..+.....+| +.+.+.+||++|.-++..+....++++
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 445667899994 4566789999999999999998888777776 567788999999888877755555544
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=168.95 Aligned_cols=262 Identities=15% Similarity=0.220 Sum_probs=192.9
Q ss_pred EEEEEECCCCC-EEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 24 ITSIDYSADGL-LLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 24 V~~v~~s~~g~-~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
++++.|+.... .+|+.+.|+.+++|.-. +++....-......-.+++ ........++++..+.|++||+....++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~--~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA--CASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh--hhhcceeeeccCcCceeeehhhHHHHHh
Confidence 78888887764 45566789999999532 2222111100001111111 1223356788899999999999988899
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECCCCC-EEEEEEcCCeEEEEEc
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDPEGL-IFGVGVNSDTIKLYDV 177 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~d~~v~iwd~ 177 (335)
+.+++|+..|+++.++..+.+|++++..|.|.+..+.++.....+... ..+..+.++|..+ ++.+++++|.|.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 999999999999999999999999999999999999988766555433 3344677888654 5678899999999999
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEE-EEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI-LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
.... +. +.+...|..+..+++|+|..+.| ++-+-|+.|.+||+.+.+....+. ...+...++|+|+|.+|+
T Consensus 195 ~g~s--p~--~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 195 QGMS--PI--FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLC 266 (673)
T ss_pred cCCC--cc--cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEE
Confidence 7632 22 23334456677889999987655 456789999999999776665553 234566799999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.|+..|+|..||+..-..+......|...|++++|-|.-
T Consensus 267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999975433333335688999999997753
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=162.79 Aligned_cols=291 Identities=20% Similarity=0.260 Sum_probs=207.3
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC------cceeeeecc--cccceEEEEecCCCeeEEeecCCC
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG------TNKRTVFSK--KYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+.+++|.++|+++.|+.++++||||++|..+++|+++.. +.+. +.++ ...+-++.|.. ....+.++..+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~--~N~~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDL--ENRFLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEcc--CCeeEecCCCc
Confidence 346799999999999999999999999999999998643 2222 2222 34566666654 34567788899
Q ss_pred CeEEEEEcCCCceEeeecC--CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc-eeEEEe-c--CCcceEEECCC-
Q psy16316 87 DTVRYLSLHDNKYIRYFPG--HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC-QGIMHV-S--GSRPIAAFDPE- 159 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~-~--~~~~~~~~~~~- 159 (335)
++|...|+++.+.+.++.. ..+.|..+..+|.++.|++.+.|+.|-+||.+.... ...+-. . ..-..+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999988877752 235899999999999999999999999999986542 222211 1 11234567774
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeE---EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNF---KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
..++++.+..+-+.+||.+.... ++... .........|+++.|+|+|+.|++--.+..-.+||+.+..|.-.-..|
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~-~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQAR-PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred ceeEEeccccCCCCceeeccccc-hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 57888888889999999986432 22221 112233457889999999999988766666778888876664322222
Q ss_pred cc----CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC-----C-----e------------eEEEeCCCCCCCeEEEE
Q psy16316 237 LN----NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK-----G-----F------------KVCVLDADHPSPVQTIQ 290 (335)
Q Consensus 237 ~~----~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~-----~-----~------------~~~~~~~~h~~~v~~v~ 290 (335)
.. ....+.+++|--| .-+++||.+=.|++|.+.. | . +...+-.+|..-+++|.
T Consensus 286 N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 21 1223456777655 4499999999999998742 1 1 01112246999999999
Q ss_pred eCCCCcEEEeee--ceeEEecc
Q psy16316 291 FNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 291 ~sp~~~~~~s~~--~~~~~w~~ 310 (335)
|+|-..+++|.+ ..+++|.+
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecCCcceEeccchhhheecccc
Confidence 999988888776 45899974
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=155.41 Aligned_cols=212 Identities=16% Similarity=0.233 Sum_probs=164.2
Q ss_pred cceeeeccCCccEEEEEECC--CCCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 12 KVAKLFRENTDKITSIDYSA--DGLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~--~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.++..|+||.++|.-+.|.. -|.+|||+|.||.|.||.-+++.- ......|+..+++++|.|..-+.+++.++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 45668999999999999986 899999999999999999888742 22345678889999999999999999999999
Q ss_pred eEEEEEcCCC---ceEeeecCCCCCeEEEEECCC---C-----------CEEEEeeCCCcEEEeecCCCCceeEE---Ee
Q psy16316 88 TVRYLSLHDN---KYIRYFPGHTKKVNSLCLSPI---D-----------DTFISGSYDKTVRLWDLRSPNCQGIM---HV 147 (335)
Q Consensus 88 ~i~~~~~~~~---~~~~~~~~H~~~V~~~~~~~~---~-----------~~l~s~s~D~~i~vWd~~~~~~~~~~---~~ 147 (335)
.|.+.+.+.. ...+....|.-.|++++|.|. | ..|+||+.|+.|++|+...++-.... .+
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH 206 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence 9999988754 223345689999999999986 4 46999999999999999876422111 12
Q ss_pred cCCcceEEECCC----CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEE
Q psy16316 148 SGSRPIAAFDPE----GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFD 223 (335)
Q Consensus 148 ~~~~~~~~~~~~----~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d 223 (335)
.+=+.-+++.|. ..++++|+.|+++.||-.+. +..+.. .....+-.+.+..+.||+.|+.|+++..|+.+.+|.
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e~e~wk-~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE-EYEPWK-KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecC-ccCccc-ccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 222233455553 35799999999999998873 323332 222333455677899999999999999999999997
Q ss_pred CC
Q psy16316 224 AY 225 (335)
Q Consensus 224 ~~ 225 (335)
-.
T Consensus 285 e~ 286 (299)
T KOG1332|consen 285 EN 286 (299)
T ss_pred eC
Confidence 54
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=160.84 Aligned_cols=246 Identities=22% Similarity=0.300 Sum_probs=181.4
Q ss_pred eccCCccEEEEEECCCC--CEEEEecCCCeEEEEEccCC----------------cceeeeecccccceEEEEecCCCee
Q psy16316 17 FRENTDKITSIDYSADG--LLLISCSEDDQIVIYDCELG----------------TNKRTVFSKKYGVDLIRFTHAKQAA 78 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (335)
.-+|.+.++-+.-++-| .+.|+-+..|.|+|||+... +.+.++.+|+...+.+.|++...+
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 34688888888888755 57778888999999998531 234455667777888999985443
Q ss_pred EEeecCCCCeEEEEEcCCCceE---eeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCC---CceeEEEecCCc
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYI---RYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSP---NCQGIMHVSGSR 151 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~---~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~---~~~~~~~~~~~~ 151 (335)
.++++..-+.|++|...++.-. .-+.+|+..|..++|+|. ...++|||.||+|+|||+|.+ .++.+..+...+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 3456666788999998876533 346689999999999996 468999999999999999987 345555556678
Q ss_pred ceEEECCCCCEEEEEEcCCeEEEEEccCCCCC-ceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee
Q psy16316 152 PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG-PFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~ 229 (335)
.++.|+....++++|++||+++|||+|....+ |...+++ +..+++++.|+|... .+++++.|..|.+||+.-..-
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 88999988889999999999999999986543 4444443 566789999999754 667788899999999742211
Q ss_pred --------e--------eeecccccCCCCceEEEEcCC-CcEEEEEeCCCcEEEEE
Q psy16316 230 --------L--------QTLAGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 230 --------~--------~~~~~~~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd 268 (335)
. +-+..|.+. ..+..+.|++. ..+|++.+.|| +.||.
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQ-ke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQ-KEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhhccccccchhcCCceeEEEecch-hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 0 111223222 23556889985 45888888888 66664
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=163.92 Aligned_cols=292 Identities=18% Similarity=0.266 Sum_probs=214.1
Q ss_pred eeccCCccEEEEEECCCC--CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 16 LFRENTDKITSIDYSADG--LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.++...+.|+++ ++|+. +.++.|+.+|.++|||+.+++.+.++......++++.- .+-..+++.|-.+|+|.++|
T Consensus 154 ~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq--sPaLDVVaiG~~~G~ViifN 230 (910)
T KOG1539|consen 154 FLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ--SPALDVVAIGLENGTVIIFN 230 (910)
T ss_pred eeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEecc--CCcceEEEEeccCceEEEEE
Confidence 344444448877 68876 46899999999999999999998888777666666544 44556777888899999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCCEEEEEEcCC
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
++.++.+..++--.+.|++++|..||+ .+++|+..|.+-+||+...+.+.+.. +.+......+-|...++++++.|+
T Consensus 231 lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 231 LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence 999999999984469999999999985 67778888999999999877665543 223344455666666666666666
Q ss_pred eEEEEEccCCCC------------Cc------------------------------------------------------
Q psy16316 171 TIKLYDVRSFDK------------GP------------------------------------------------------ 184 (335)
Q Consensus 171 ~v~iwd~~~~~~------------~~------------------------------------------------------ 184 (335)
.+++|=..+++. .|
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 666554331100 00
Q ss_pred -------eeeEEec----------------------------------cCCC------ccceEEEEccCCCEEEEEeCCC
Q psy16316 185 -------FSNFKFA----------------------------------AEKE------CDWTGIKFSADGKYILISTNGS 217 (335)
Q Consensus 185 -------~~~~~~~----------------------------------~~~~------~~~~~~~~s~~~~~l~~~~~~~ 217 (335)
...+... .++. ..+.+++.++=|++.+.|...|
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 0000000 0000 1234577778888999999999
Q ss_pred eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE--------------------
Q psy16316 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV-------------------- 277 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~-------------------- 277 (335)
.|-+|++.+|-....+.....|...+..++..-.++.+++++.+|.+++||..+......
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence 999999999977777654455777889999999999999999999999999875431111
Q ss_pred ----------eC----------CCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 278 ----------LD----------ADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 278 ----------~~----------~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
++ -+|.+.|++++|||+|+.+++++ ++|++|..
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 11 14999999999999999999996 67899964
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-19 Score=158.96 Aligned_cols=280 Identities=13% Similarity=0.160 Sum_probs=215.0
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee-eeecc-cccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR-TVFSK-KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
..+|.+++|+.+.+.||.+-.||+|-+|++..+-... .+.++ ...+..++|.+. .-+.+.+.++.|.-||+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecccCc
Confidence 5679999999999999999999999999999876544 44444 345888999833 335566789999999999999
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
....+..-.+.|++++.+|.+..++-|+.||.+..++...+....... ..+.+-.+.|+|++..++.|+.|+.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 999998888999999999999999999999988888887776554322 23344567899999999999999999999
Q ss_pred EccCCCCCceeeEEe---ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 176 DVRSFDKGPFSNFKF---AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 176 d~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
|+.+.........+. .....+.+.++.|-. ...+++|...|+|.+||...+...+.+. .+...+.+++..+++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNE 257 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCC
Confidence 998644322111111 111234455666664 4568899999999999999987766544 456678999999999
Q ss_pred cEEEEEeCCCcEEEEECCCCee---EEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEec
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFK---VCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWI 309 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~---~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~ 309 (335)
.++++++.|++|.-+...++.. .......|+.-|.+++..++ .+.+|+-+..+..
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999998776533 22223468888999999987 7778876655554
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=150.92 Aligned_cols=237 Identities=14% Similarity=0.188 Sum_probs=170.0
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 145 (335)
..++.|++.+ .++|.|..||.+.+||+.+...-+.+.+|..+|.|++|+++|+.|+|+|.|..|++||+..+.+...+
T Consensus 26 a~~~~Fs~~G--~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWG--DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCc--ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 5567777665 46777888999999999999999999999999999999999999999999999999999999988888
Q ss_pred EecCCcceEEECCCC-CEEEEEEcCCeEEEEEccCCCCCceeeE-EeccCC--CccceEEEEccCCCEEEEEeCCCeEEE
Q psy16316 146 HVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNF-KFAAEK--ECDWTGIKFSADGKYILISTNGSIIRT 221 (335)
Q Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~--~~~~~~~~~s~~~~~l~~~~~~~~i~i 221 (335)
.....+-.+.|+|.. +.+++.--+..-.+.++... .... ....+. ...-....|++.|+++++|+..|.+-+
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~----~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP----KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCC----ceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 887777777788754 33333322222333333221 1110 000011 111122458999999999999999999
Q ss_pred EECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE---EeCCCC-------CCCeEEEEe
Q psy16316 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC---VLDADH-------PSPVQTIQF 291 (335)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~---~~~~~h-------~~~v~~v~~ 291 (335)
+|.++.+|+..++--. ...+..+.|+-.|++|+..+.|+.||.|+..+-.-.. .....| .-+=..+.|
T Consensus 180 ~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 180 YDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred Eecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 9999999987765322 3456778899999999999999999999976311110 000001 112346789
Q ss_pred CCCCcEEEeeec---eeEEecc
Q psy16316 292 NPKFNMMASACT---NLAFWIP 310 (335)
Q Consensus 292 sp~~~~~~s~~~---~~~~w~~ 310 (335)
|.+|.|++.++. .+.||+-
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred cCCccEEEeccccceeEEEEec
Confidence 999999998873 4788864
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=159.57 Aligned_cols=236 Identities=20% Similarity=0.270 Sum_probs=172.0
Q ss_pred CCCEEEEecCCCeEEEEEccCCccee---e------------------eecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKR---T------------------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~---~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
-|+|+|.|..|-.|-|||+.-..... + -.+|...+..++|... ...++++++.|.+|.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEE
Confidence 36799999999999999986432110 0 0123334445555433 346889999999999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCce-eEEEecCCcceEEECCCC-CEEEEEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQ-GIMHVSGSRPIAAFDPEG-LIFGVGV 167 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~ 167 (335)
+||+.++++...+..|.+.|.++.|+|. ...|++||.|++|++.|.|...+. ..+...+.+..++|.|.. ..+.+++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 9999999999999999999999999996 578999999999999999964443 345667777778888854 6778888
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE-EEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY-ILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.||+|+=+|+|... .+....+ -|...+.++++++.-+. +++++.++.|++|++..-.. +....+.-..+...+.
T Consensus 350 ddG~v~~~D~R~~~-~~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPG-KPVWTLK---AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCF 424 (463)
T ss_pred CCceEEeeecCCCC-CceeEEE---eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeec
Confidence 99999999999864 3333332 34557889999887654 56688899999999864322 1111121112223355
Q ss_pred EEcCCCc-EEEEEeCCCcEEEEECCCCe
Q psy16316 247 SFTPDSK-YVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 247 ~~sp~~~-~l~tgs~dg~v~iwd~~~~~ 273 (335)
++.|+-. +||.|+..+.++|||..+..
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccCh
Confidence 6777644 68889999899999987654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=156.31 Aligned_cols=267 Identities=13% Similarity=0.172 Sum_probs=191.5
Q ss_pred EEecCC-CeEEEEEccCCcceeeeecc-cccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEE
Q psy16316 37 ISCSED-DQIVIYDCELGTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLC 114 (335)
Q Consensus 37 asgs~D-g~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~ 114 (335)
.+++.| .++.+||+.+|....++.+. ......+..-. ... ++++...-..+.+|.+........+---.++|.+++
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~y-llsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEY-LLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc-hhh-eeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 344445 45999999999887766543 21111111100 111 223333345788888866544332222357899999
Q ss_pred ECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCC----CCceeeEE
Q psy16316 115 LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD----KGPFSNFK 189 (335)
Q Consensus 115 ~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~----~~~~~~~~ 189 (335)
-+|.|.+|+.|+.-+.|++|.+.++....+++ +-..++++.|+.++.++++|+.|+.|.+|++-..- ......+.
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 99999999999999999999999999876652 33456788999999999999999999999975421 11222333
Q ss_pred eccCCCccceEEEEccC--CCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 190 FAAEKECDWTGIKFSAD--GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 190 ~~~~~~~~~~~~~~s~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
...+|.-.++.+...+- ..++++++.|+++++||+..+..+.++.- ...+.+++.+|..+.+..|+++|+|.+.
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcccccEEEecCCcceEEee
Confidence 33455566676666544 56899999999999999999988776642 3457789999999999999999999998
Q ss_pred ECCCC----------------eeEEEeCCCCCC--CeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 268 NAEKG----------------FKVCVLDADHPS--PVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 268 d~~~~----------------~~~~~~~~~h~~--~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
++... .+...+ .+|.+ +|++++.+-||.+|+||+ +.+.+|..
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 76432 122223 46888 999999999999999997 56888864
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=152.33 Aligned_cols=206 Identities=21% Similarity=0.377 Sum_probs=150.3
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-----ceeEEEecCCcceEEECCCCCEEEEE-EcCCeEEE
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-----CQGIMHVSGSRPIAAFDPEGLIFGVG-VNSDTIKL 174 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~i 174 (335)
..++||.+.|++++|+.+|..|+|++.|++||+||++... +++..-.-+..+.+.|.||.+-+++. -...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4578999999999999999999999999999999998643 22221122334568899998765554 45678999
Q ss_pred EEccCCCCC--ce-----eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 175 YDVRSFDKG--PF-----SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 175 wd~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
|.+.....+ +. ..+.+...+...+-.+-..-.+.++++++.|..|-+|+++ |+.+..+..-... -..++
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~---n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS---NYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc---cccee
Confidence 987542221 11 1111222334445556677788899999999999999999 7777766543222 23478
Q ss_pred EcCCCcEEEEEeCCCcEEEEECC---CC-----eeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAE---KG-----FKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~---~~-----~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.||+|+++|+++---.|++|+.- +| .+...+ .+|...|...+|||+...+++++ +..++|+.+
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999999999998899999863 22 223334 57999999999999999999886 668999763
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=153.05 Aligned_cols=282 Identities=18% Similarity=0.265 Sum_probs=192.2
Q ss_pred eeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcce---------eeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 16 LFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNK---------RTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.++.| .+|..+.|.++.. .||||+.|..|+||-++.+... ..+..|...++.++|.+.++ ++++++.
T Consensus 9 ~wH~~-~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D 85 (434)
T KOG1009|consen 9 SWHDH-EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGD 85 (434)
T ss_pred EecCC-CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCC
Confidence 34433 5699999999886 9999999999999988765432 23456778899999998655 7889999
Q ss_pred CCeEEEEEcC--------C--------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-Eec
Q psy16316 86 DDTVRYLSLH--------D--------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVS 148 (335)
Q Consensus 86 d~~i~~~~~~--------~--------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~ 148 (335)
++.+.+|-.. + ....+.+.+|...|..++|+|+++.+++++.|+++++||+..++..... .+.
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence 9999999765 2 2234677899999999999999999999999999999999998876544 334
Q ss_pred CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceee---EE--eccCCC-------------ccceEEEEccCCCEE
Q psy16316 149 GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN---FK--FAAEKE-------------CDWTGIKFSADGKYI 210 (335)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~--~~~~~~-------------~~~~~~~~s~~~~~l 210 (335)
+-...++|+|.++++++-+.|+..+.+.+...+...... .. ...+.. .=+..++|+|+|..+
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 445678999999999988888766666554321110000 00 000111 112357899999998
Q ss_pred EEEeC----CCe-----EEEEECCCCeeeeeeccccc-CCCCceEEEEc------------------CCCcEEEEEeCCC
Q psy16316 211 LISTN----GSI-----IRTFDAYNGQCLQTLAGFLN-NKGCPLEASFT------------------PDSKYVISGSTDG 262 (335)
Q Consensus 211 ~~~~~----~~~-----i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~s------------------p~~~~l~tgs~dg 262 (335)
++... ++. .++|+- +.+++...+.. .......+.|+ |-+-.+|.++.|
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsr---k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~- 321 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSR---KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN- 321 (434)
T ss_pred EcccceeeeCCceeeceeEeecc---ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-
Confidence 86532 222 233332 21111111111 11112222222 333456666655
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
.|++||............-|=.+|++++|+++|.+++..+.+
T Consensus 322 svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~D 363 (434)
T KOG1009|consen 322 SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTD 363 (434)
T ss_pred eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccC
Confidence 699999988777777777788999999999999988876644
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=166.71 Aligned_cols=256 Identities=20% Similarity=0.262 Sum_probs=177.7
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC--------cceeeeecccccceEEEEecCCCeeEE
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG--------TNKRTVFSKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
+.+.+.-+++.|.+.|+.+.|.|....|++|+.||++++|+++.. +.+.++.+|..+|-+++.+.... ..
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ 359 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HC 359 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EE
Confidence 345666789999999999999999999999999999999999432 34567888999999988876554 56
Q ss_pred eecCCCCeEEEEEcCCC----------ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE-EEecC
Q psy16316 81 ASTKIDDTVRYLSLHDN----------KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI-MHVSG 149 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~----------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~~ 149 (335)
.+++.|++|+.|++... .....+.||++.|+.+++++....|+++|.||++|.|+......... .....
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH 439 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcccc
Confidence 67889999999966422 12356789999999999999999999999999999999865443110 00111
Q ss_pred Ccc-eEEECC-CCCEEEEEEcCCeEEEEEccCCCCC-ceeeEEec----cCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 150 SRP-IAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKG-PFSNFKFA----AEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 150 ~~~-~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~----~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
..+ .+.+-. ...+.++. .....+++...... ....+... ......++.+..+|.....+.+..++.|+++
T Consensus 440 g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred CCcceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 111 111111 10111111 11222222111100 00000000 0011234567889999999999999999999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
|..+++.+..... +...+.++++.|+|.+|++|+.||++++|++...
T Consensus 517 dn~~~~~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 517 DNKTGKILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccccccchheee---ccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999987766655 3455678999999999999999999999998543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=150.55 Aligned_cols=290 Identities=29% Similarity=0.482 Sum_probs=211.7
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-ceeeeecccc-cceEEEE-ecCCCeeEEeecCCCCeEEEE
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-NKRTVFSKKY-GVDLIRF-THAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.+.+|...|.++.|.+++..++.++.|+.+.+|+...+. ....+..... .+..+.+ .++....+...+..|+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998886 4555544332 4555555 333332333344559999999
Q ss_pred EcCC-CceEeeecCCCCCeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEEE-ecCCcceEEECCCCC-EEEEEEc
Q psy16316 93 SLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGL-IFGVGVN 168 (335)
Q Consensus 93 ~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 168 (335)
++.. ......+.+|...|.+++|+|++..+++++. |+.+++|++........+. +...+..+.+.|++. ++++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7888889999999999999999998999886 9999999999755554443 345566778888887 5555589
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee-eeeecccccCCCCceEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC-LQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~ 247 (335)
|+.+.+||.+... .... ....+.... -..|+|++.++++++.++.+++|++..... ...+ ..+...+.++.
T Consensus 220 d~~i~~wd~~~~~---~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~ 291 (466)
T COG2319 220 DGTIRLWDLSTGK---LLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVA 291 (466)
T ss_pred CCcEEEEECCCCc---EEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEE
Confidence 9999999876321 1110 111122221 127999998889999999999999987664 3333 23456778889
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCcEEEee-e--ceeEEeccccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMASA-C--TNLAFWIPTYL 313 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~~s~-~--~~~~~w~~~~~ 313 (335)
|+|++..+++++.|+.+++|+........... ..|...+..+.|.|++..++.+ . +.+.+|.....
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 99998998889999999999988766554443 3587789999994332444444 2 44666765333
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-19 Score=156.92 Aligned_cols=290 Identities=17% Similarity=0.183 Sum_probs=180.8
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee----ccccc----ceEEEEecCCCeeEEeec
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF----SKKYG----VDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~ 83 (335)
.-.+.|...+++|.+++|+|++..+|+|+.||.|++||..++....-+. +...+ +-.+.+-.+ ..++++
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sg 221 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASG 221 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec---CcEEEe
Confidence 3346677889999999999999999999999999999999886654211 11111 223333322 245677
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-----EecCCcceEEECC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-----HVSGSRPIAAFDP 158 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-----~~~~~~~~~~~~~ 158 (335)
..-|+|.+||...+..++.++.|.+.|.+++..++++.+++++.|+.|..+...+.....+. .+.+....++.-+
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 77899999999999999999999999999999999999999999999998887655321111 0111111111111
Q ss_pred CCCEEEEEEc------------------------------------------CCeEEEEEccCC----CCCceeeEEecc
Q psy16316 159 EGLIFGVGVN------------------------------------------SDTIKLYDVRSF----DKGPFSNFKFAA 192 (335)
Q Consensus 159 ~~~~~~~~~~------------------------------------------d~~v~iwd~~~~----~~~~~~~~~~~~ 192 (335)
..+.+|+. ...+.+|-+.+. +..+..-++...
T Consensus 302 --~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~ 379 (691)
T KOG2048|consen 302 --NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT 379 (691)
T ss_pred --ceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeec
Confidence 12222222 233333433321 001111112222
Q ss_pred CCCccceEEEEccCCCEEEEEeCCCeEEEEECC-----------------------------------------------
Q psy16316 193 EKECDWTGIKFSADGKYILISTNGSIIRTFDAY----------------------------------------------- 225 (335)
Q Consensus 193 ~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~----------------------------------------------- 225 (335)
.....+.+.+++|+|++++.++-.. .++|.+.
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~~~-~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTVSR-TKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFEL 458 (691)
T ss_pred CCccceeeeccCCCCCEEEEeeccc-eEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEe
Confidence 2334467789999999999887211 1222111
Q ss_pred -CCeeeeeeccc--ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC-CCcEEEee
Q psy16316 226 -NGQCLQTLAGF--LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASA 301 (335)
Q Consensus 226 -~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~ 301 (335)
+.. .+.+... ......+..+..||+|++||+.+.+|.|.+||+++...-... ..-...|+.++|+| +.+-++.+
T Consensus 459 ~~ps-~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 459 ETPS-FKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLNIDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred cCcc-hhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccCcceeeeeccccccCcEEEE
Confidence 100 0011111 112345677899999999999999999999999876544433 23457899999996 44555555
Q ss_pred eceeEEec
Q psy16316 302 CTNLAFWI 309 (335)
Q Consensus 302 ~~~~~~w~ 309 (335)
..+-.+++
T Consensus 537 ts~nQv~e 544 (691)
T KOG2048|consen 537 TSNNQVFE 544 (691)
T ss_pred ecCCeEEE
Confidence 44434433
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=157.92 Aligned_cols=288 Identities=13% Similarity=0.161 Sum_probs=193.4
Q ss_pred EEEEecCCCeEEEEEccCCcceeeeecc--cccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC--ce--EeeecCCCC
Q psy16316 35 LLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN--KY--IRYFPGHTK 108 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~--~~~~~~H~~ 108 (335)
++||+| .+++|||...-+-.-.+..+ ..++..+.|..... .+.++.+.|..+++|.-... .. ++...|.
T Consensus 6 ~~aS~g--d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-- 80 (673)
T KOG4378|consen 6 HVASTG--DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-- 80 (673)
T ss_pred eeeccC--CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--
Confidence 344444 57899998765443333333 34466677765443 67777778999999965432 22 2233333
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceee
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~ 187 (335)
.-.|++......++++|+..++|+|||++...+.+.. .+...+..+.+.....++|+++..|.|.|..+.+..+. ..
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~ 158 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TT 158 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--cc
Confidence 4456655566689999999999999999976666544 23344556677777789999999999999988764321 22
Q ss_pred EEeccCCCccceEEEEccCCCEEE-EEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC-CcEEEEEeCCCcEE
Q psy16316 188 FKFAAEKECDWTGIKFSADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD-SKYVISGSTDGRIH 265 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~s~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~ 265 (335)
+. .+....+.-+.|+|..+.++ +++++|.|.+||.........+ ...|..+...++|+|. ..+||+.+.|++|+
T Consensus 159 f~--~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 159 FT--IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred ee--cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEE
Confidence 22 22233446689999988766 4778899999999876544322 2235556667999995 46899999999999
Q ss_pred EEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecccccccccCCCCccceEEEEEeeeeC
Q psy16316 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQEPDTIDNLKIYLGVLCYQ 335 (335)
Q Consensus 266 iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (335)
+||.........+... .|...|+|.|+|.+|+.|....+++-.+.-.-+++...+.-++--+-.+-||
T Consensus 235 ~yD~~s~~s~~~l~y~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTYS--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred Eeecccccccceeeec--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 9999865555555443 4788999999999999998777766544433333333334444445555554
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=152.03 Aligned_cols=249 Identities=17% Similarity=0.251 Sum_probs=182.3
Q ss_pred cCCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 19 ENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 19 ~h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.|...-..++|+-+ ..+||.||.-|.|+|-|+.++.+...+.+|...++.+++.|... .++.+++.|..||+||+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEec
Confidence 37788888998753 35899999999999999999999999999999999999998754 35567778999999999
Q ss_pred CCCceEeee---cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee----E--EEecCC--------cceEEE-
Q psy16316 95 HDNKYIRYF---PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG----I--MHVSGS--------RPIAAF- 156 (335)
Q Consensus 95 ~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~----~--~~~~~~--------~~~~~~- 156 (335)
.+..++..+ +||.+.|.+++|+++|..++|++.|.++++|++...+... . +..... ...-.|
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 999998876 6899999999999999999999999999999998543211 0 000000 000011
Q ss_pred ----C--------CCCCEEEEEEcCCeEEEEEccCCCCC-----c----eeeEEeccCCCcc--ceEEEEccCCCEEEEE
Q psy16316 157 ----D--------PEGLIFGVGVNSDTIKLYDVRSFDKG-----P----FSNFKFAAEKECD--WTGIKFSADGKYILIS 213 (335)
Q Consensus 157 ----~--------~~~~~~~~~~~d~~v~iwd~~~~~~~-----~----~~~~~~~~~~~~~--~~~~~~s~~~~~l~~~ 213 (335)
+ --|+++++=+-++.|..|.....+.. + ...+....-..+. ....+|+|-.+.|+.+
T Consensus 246 t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 1 12556777677789999987322111 0 0011100111122 2346778889999999
Q ss_pred eCCCeEEEEECCCCeee--eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 214 TNGSIIRTFDAYNGQCL--QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 214 ~~~~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
.+.+.|.+||+++.+.. .++. +......|...+|+-|+.+|+...+|++|.-||.
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~-~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLT-HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEE-eccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 99999999999876653 1222 2333456788999999999999999999999985
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=157.60 Aligned_cols=292 Identities=11% Similarity=0.201 Sum_probs=195.1
Q ss_pred ceeeeccCCccEEEEEECCCCC---EEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 13 VAKLFRENTDKITSIDYSADGL---LLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~---~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
+...+.||+++|+|+.|-|+.. .++||+.|+.|++|.++-.. ++.++.+ ....++++..... .......|+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g--~~~~~~cv~a~~~--~~~~~~ad~ 121 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG--HCKECVCVVARSS--VMTCKAADG 121 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC--cceeEEEEEeeee--EEEeeccCc
Confidence 4567899999999999999887 89999999999999998322 2223333 3444444443222 122225699
Q ss_pred eEEEEEcCCCc--eEeeecCCCCC--eEEEEECCC-CC-EEEEeeCCCcEEEeecCCCCceeEEEecCC---cceEEECC
Q psy16316 88 TVRYLSLHDNK--YIRYFPGHTKK--VNSLCLSPI-DD-TFISGSYDKTVRLWDLRSPNCQGIMHVSGS---RPIAAFDP 158 (335)
Q Consensus 88 ~i~~~~~~~~~--~~~~~~~H~~~--V~~~~~~~~-~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~---~~~~~~~~ 158 (335)
++.+|+.+..+ +...++--.+. -.|++..|+ +. .++.|+.+..|.++.-...++..+....+. +..++|..
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR 201 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence 99999996555 22333222222 246666663 33 456677888888887665555555444333 23344443
Q ss_pred ---CCCEEEEEEcCCeEEEEEccCCCCC---------------ce----eeEE-------eccCCCccceEEEEccCCCE
Q psy16316 159 ---EGLIFGVGVNSDTIKLYDVRSFDKG---------------PF----SNFK-------FAAEKECDWTGIKFSADGKY 209 (335)
Q Consensus 159 ---~~~~~~~~~~d~~v~iwd~~~~~~~---------------~~----~~~~-------~~~~~~~~~~~~~~s~~~~~ 209 (335)
+..++++++.|..|+||.+.-.... +. ..+. ...+|..-++++.|+|.+..
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD 281 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh
Confidence 3458899999999999998643200 00 0111 12356667889999999999
Q ss_pred EEEEeCCCeEEEEECCCC--eeee--eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC--CeeEEEeCCCCC
Q psy16316 210 ILISTNGSIIRTFDAYNG--QCLQ--TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK--GFKVCVLDADHP 283 (335)
Q Consensus 210 l~~~~~~~~i~i~d~~~~--~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~--~~~~~~~~~~h~ 283 (335)
|++++.|+++.+|...+. --+. ++....+...-....-|+|++..+++-+.-|-.++|...+ .........+|.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 999999999999987643 2222 2222222223356788999999999999999999998332 223334457899
Q ss_pred CCeEEEEeCCCCcEEEeeece--eEEe
Q psy16316 284 SPVQTIQFNPKFNMMASACTN--LAFW 308 (335)
Q Consensus 284 ~~v~~v~~sp~~~~~~s~~~~--~~~w 308 (335)
+.|.+++|+|.|+++.+++.+ -|+.
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeee
Confidence 999999999999999999754 4554
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=164.11 Aligned_cols=124 Identities=22% Similarity=0.337 Sum_probs=102.3
Q ss_pred ceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcc-----eeeeeccc-ccceEEEEecCCCeeEEeecCC
Q psy16316 13 VAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTN-----KRTVFSKK-YGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
-+..+.+|.+.|+.+.|+| +..+|||||.|..++||.+..+.. .....++. -.+.++.|.+..+..++.. .
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~--a 148 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG--A 148 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec--c
Confidence 4456889999999999998 446899999999999999874421 12233333 3467889988777655433 3
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 138 (335)
-+++.+||+.+++.+..+.+|.+.|.+..|+.||.+|++++.|+.|+|+|.+.
T Consensus 149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 68999999999999999999999999999999999999999999999999874
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=178.00 Aligned_cols=278 Identities=18% Similarity=0.305 Sum_probs=199.4
Q ss_pred EEEECCCCC-EEEEe----------cCCCeEEEEEccCCcce---eee--ecccccceEEEEecCCCe--eEEeecCCCC
Q psy16316 26 SIDYSADGL-LLISC----------SEDDQIVIYDCELGTNK---RTV--FSKKYGVDLIRFTHAKQA--AIHASTKIDD 87 (335)
Q Consensus 26 ~v~~s~~g~-~lasg----------s~Dg~i~lwd~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~d~ 87 (335)
.++|+|.+. +||+| |.+.++-||.+...... +.+ .........++|.+.+.. .+++++..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 577899886 56655 33566667765433222 111 223566788999876554 5788888999
Q ss_pred eEEEEEcCC---C---ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEEC
Q psy16316 88 TVRYLSLHD---N---KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFD 157 (335)
Q Consensus 88 ~i~~~~~~~---~---~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~ 157 (335)
.|.+||... + ..+.++..|++.|..+.|++.. ++|++|+.||.|.|||++..+..... .....+.+++|.
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN 170 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence 999999865 2 2355677899999999999965 59999999999999999864433222 122334455555
Q ss_pred CC-CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCC---CeEEEEECCCC-eeee
Q psy16316 158 PE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNG---SIIRTFDAYNG-QCLQ 231 (335)
Q Consensus 158 ~~-~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~---~~i~i~d~~~~-~~~~ 231 (335)
.. ..+|++++.++.+.|||+|.. .+...+..... .+.+..++|+|++. .++++++| ..|.+||++.- ..++
T Consensus 171 rkvqhILAS~s~sg~~~iWDlr~~--~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 171 RKVSHILASGSPSGRAVIWDLRKK--KPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred hhhhHHhhccCCCCCceeccccCC--CcccccccCCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 43 457888999999999999963 34444433322 35678899999975 45555554 36999998753 3445
Q ss_pred eecccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee--ceeEE
Q psy16316 232 TLAGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--TNLAF 307 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--~~~~~ 307 (335)
.+++ |..-++++.|++.+ .+|+|++.|++|.+||.++++.+..++. -.+++..+.|.|..+ +++.++ +.|-|
T Consensus 248 ~~~~---H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 248 ILEG---HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhcc---cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceee
Confidence 5544 44557899999966 8999999999999999999998888865 578999999999876 555554 67777
Q ss_pred ecc
Q psy16316 308 WIP 310 (335)
Q Consensus 308 w~~ 310 (335)
+.+
T Consensus 324 ~sl 326 (1049)
T KOG0307|consen 324 YSL 326 (1049)
T ss_pred eee
Confidence 766
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-18 Score=140.87 Aligned_cols=250 Identities=15% Similarity=0.261 Sum_probs=170.8
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceEeeecCCCCCeEEEEECC--CCCEEEEeeCCCcEEEee
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVRLWD 135 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~i~vWd 135 (335)
|+.-+.++.|.+.+. -+++++.|.++.+||.... .+....+.|.+.|..+.|.+ -|+.++++|.|++++||.
T Consensus 12 h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 444567777776554 4567778999999996432 34556789999999999964 389999999999999997
Q ss_pred cC--CCCc-----eeE---EEecCCcceEEECC--CCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc----------C
Q psy16316 136 LR--SPNC-----QGI---MHVSGSRPIAAFDP--EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----------E 193 (335)
Q Consensus 136 ~~--~~~~-----~~~---~~~~~~~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------~ 193 (335)
=. +.++ ... ......+..+.|.| -|..+++++.||+++||+....... ..-.... .
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL--s~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL--SQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc--ccchhhhhhhhccCCccc
Confidence 52 1111 111 12233445567877 4788999999999999997542211 1111111 1
Q ss_pred CCccceEEEEccC---CCEEEEEeCC-----CeEEEEECC-CCeeeeeecccccCCCCceEEEEcCCC----cEEEEEeC
Q psy16316 194 KECDWTGIKFSAD---GKYILISTNG-----SIIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTPDS----KYVISGST 260 (335)
Q Consensus 194 ~~~~~~~~~~s~~---~~~l~~~~~~-----~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~tgs~ 260 (335)
......++.|+|. ..+|++|+.. +.++||.-. .+..-..+.....+..+|..++|.|+- ..||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 1223457888864 4578887765 467888743 342333444445677889999999973 47999999
Q ss_pred CCcEEEEECCCC-----------------eeEEE--eCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccccccc
Q psy16316 261 DGRIHIWNAEKG-----------------FKVCV--LDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYLSNH 316 (335)
Q Consensus 261 dg~v~iwd~~~~-----------------~~~~~--~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~~~~ 316 (335)
|| |+||++... ..+.. ...+|.++|+++.|+-.|.+|+|.+ |.+++|-..+..+.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 99 999998621 11111 1356999999999999999999885 67999976665544
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=162.78 Aligned_cols=225 Identities=22% Similarity=0.303 Sum_probs=169.7
Q ss_pred cHHHHhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee-ecccccceEEEEecCCCeeEEee
Q psy16316 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 4 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
++..++.+.+.+.+.||+|.|+|+.|+.+|.+|+|||+|-.+.|||.-.-+....+ .+|...|-++.|.|..+-.++++
T Consensus 33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe
Confidence 45667889999999999999999999999999999999999999999766655555 45778899999999888888899
Q ss_pred cCCCCeEEEEEcCCC----------ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCce-eEE-----
Q psy16316 83 TKIDDTVRYLSLHDN----------KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQ-GIM----- 145 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~----------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~-~~~----- 145 (335)
+..|..|+++|+... ...+.+.-|...|.-++..|.+ +.+.++++||+||-+|++..... ...
T Consensus 113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred ccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 999999999999742 2345567899999999999988 78999999999999999864311 100
Q ss_pred ----E-ecCCcceEEECCC-CCEEEEEEcCCeEEEEEccCCCCC----------ce----eeEEeccCC-----------
Q psy16316 146 ----H-VSGSRPIAAFDPE-GLIFGVGVNSDTIKLYDVRSFDKG----------PF----SNFKFAAEK----------- 194 (335)
Q Consensus 146 ----~-~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~----------~~----~~~~~~~~~----------- 194 (335)
. ..-...++.++|. ..++++|++|--.++||.|..... +. .-..+...+
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence 0 0011234567775 568899999999999995532100 00 000011111
Q ss_pred CccceEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q psy16316 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
....+-++|+|+|.-|++.-.+..|++||+..++
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 0113458999999999999999999999986543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=150.01 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=157.0
Q ss_pred eeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCC-------cceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 16 LFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELG-------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.+.||+++|..++|+|- ...+||||.|.+|+||++..+ +....+.+|.-.|..+.|.+... .++++++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCc
Confidence 47799999999999985 468999999999999987543 23456678888999999988643 4667788899
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCc-ceEEECCCCCEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSR-PIAAFDPEGLIFGV 165 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 165 (335)
+|.+||+.++..+-++. |.+.|.+++|+.+|.+|+|.+.|+.||+||.+++.....- .+.+.. .-+.|-.++.++.+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999999888887 9999999999999999999999999999999998876543 233333 33556677777777
Q ss_pred EE---cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-EeCCCeEEEEECCCCe
Q psy16316 166 GV---NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTFDAYNGQ 228 (335)
Q Consensus 166 ~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~~~~i~i~d~~~~~ 228 (335)
|. .++.+-+||....+.. .. +.. .+....+.=--++||.+.+.. |-.|+.||.|.+.+..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP-~~-~~e-lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEP-IA-LQE-LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCc-ce-eEE-eccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 64 5689999998765432 11 111 111111111125788887765 5567899999987655
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=151.27 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=158.6
Q ss_pred hcccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcc---eeeeecccccceEEEEecCCCeeEEeecC
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTN---KRTVFSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
..++++.+|.+|.+.=+++.|||-. ..|+||.--+.|++|...++.- ...+.+|...|..+.|+|.. ..++++++
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS 277 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCS 277 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc-CceEEeee
Confidence 4578888999999999999999943 3588999999999999988753 23456788899999999864 45788999
Q ss_pred CCCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce----eEEEecCCcceEEECC
Q psy16316 85 IDDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ----GIMHVSGSRPIAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~----~~~~~~~~~~~~~~~~ 158 (335)
.|++|++||++.+ +.....++|.+.|+.++|+..-.+|++|+.||+++|||+|+.+.- .+..+...+.++.|+|
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 9999999999877 223334899999999999998889999999999999999875432 2335677788899998
Q ss_pred C-CCEEEEEEcCCeEEEEEccCCCC------Cc-------eeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 159 E-GLIFGVGVNSDTIKLYDVRSFDK------GP-------FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 159 ~-~~~~~~~~~d~~v~iwd~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
. ...+++++.|++|.|||+.-... .. ..++.+.+.....+..+.|+++-+=+++++.-.-+.+|
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 5 46788889999999999864211 00 01122223334456678888876644444332223444
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=151.63 Aligned_cols=257 Identities=18% Similarity=0.283 Sum_probs=177.9
Q ss_pred ccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeec--ccccceEEEEecCCCeeEEeecCCCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFS--KKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
+.-...|..|.++|.++.|+|.. .++.+.|.||+|++=|++.+.....+.. .....+.+.|+......+++ .-. |
T Consensus 224 ~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~-~~~-G 301 (498)
T KOG4328|consen 224 KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFG-DNV-G 301 (498)
T ss_pred cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEe-ecc-c
Confidence 44456789999999999999865 6899999999999999987654333222 23345556666554444333 323 3
Q ss_pred eEEEEEcCCCce-EeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCc-----eeEEEecCCcceEEECCCC
Q psy16316 88 TVRYLSLHDNKY-IRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNC-----QGIMHVSGSRPIAAFDPEG 160 (335)
Q Consensus 88 ~i~~~~~~~~~~-~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~-----~~~~~~~~~~~~~~~~~~~ 160 (335)
...+||+.+++. ...++-|...|++++++|.. .+|+|||.|++++|||++.-.. +..+.+...+..+.|+|.+
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 788999987654 56677899999999999975 5799999999999999986332 2223344556678899988
Q ss_pred CEEEEEEcCCeEEEEEccCC--CCCceeeEEeccCCCccc--eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 161 LIFGVGVNSDTIKLYDVRSF--DKGPFSNFKFAAEKECDW--TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
-.+++-+.|..|+|||..-. ...+...+.+........ -...|.|+.++++++-.-+.|-+||...++.+-.+...
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 77888889999999997411 111222222221111111 23679999999999988888999999988866655432
Q ss_pred ccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECC
Q psy16316 237 LNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAE 270 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~ 270 (335)
... .-+.-..|||-+. +++-|+.-|.|+||...
T Consensus 462 ~~~-tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 462 ESS-TIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccc-ccccceeecccccceeccCCccceEEEEecC
Confidence 211 1122358999887 45555567889999654
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=148.73 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=163.1
Q ss_pred eeEEeecCCCCeEEEEEcCCCce---Eee------------------ecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEe
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKY---IRY------------------FPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLW 134 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~---~~~------------------~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vW 134 (335)
+.++|.|..|..|.+||+.-... ..+ -.+|++.|.+++|+.. .+.|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 45788888999999999863221 111 2379999999999876 4689999999999999
Q ss_pred ecCCCCceeEE-EecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEE
Q psy16316 135 DLRSPNCQGIM-HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YIL 211 (335)
Q Consensus 135 d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~ 211 (335)
|+.++++...+ ++...++.+.|+| ...++.+|+.|++|.+.|+|..... -...++ ...+-.++|+|... .++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-~~~wk~----~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-GKEWKF----DGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-CceEEe----ccceEEEEecCCCceeEE
Confidence 99999998776 4666777788877 4678999999999999999952211 111111 23445688988654 567
Q ss_pred EEeCCCeEEEEECCCC-eeeeeecccccCCCCceEEEEcCC-CcEEEEEeCCCcEEEEECCCCeeEEEe-CCCCCCCeEE
Q psy16316 212 ISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKGFKVCVL-DADHPSPVQT 288 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~ 288 (335)
++++||+|+-+|+++. +++.++..|. ..|..+++++. ..+++|+|.|+.|++|++......... ..--.+...+
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 8889999999999975 7778877654 45677888874 457999999999999998643211111 0111234556
Q ss_pred EEeCCCCcE-EEeee-c-eeEEecccccc
Q psy16316 289 IQFNPKFNM-MASAC-T-NLAFWIPTYLS 314 (335)
Q Consensus 289 v~~sp~~~~-~~s~~-~-~~~~w~~~~~~ 314 (335)
.++.|+-.. +|.|+ . -+++|......
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccCh
Confidence 677776543 44444 3 38899764333
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-16 Score=141.49 Aligned_cols=290 Identities=31% Similarity=0.493 Sum_probs=212.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecC-CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSE-DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+.....+..|...|..+.|+|++.++++++. |+.+++|+...+.....+..|...+..+++.+... .++++++.|+.+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcE
Confidence 3556778999999999999999999999986 99999999998777777777888999999995554 344556789999
Q ss_pred EEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc-eeEE-EecCCcceEEECCCCCEEEEE
Q psy16316 90 RYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC-QGIM-HVSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 90 ~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 166 (335)
++||...+..+. .+.+|...+ ...|+|++..+++++.|+.+++||++.... .... .+........+.|++..++++
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 999988888887 689998886 448999998899999999999999987664 2222 123344556888988777778
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
+.|+.+++||.+..... .... ...+...+..+.+.+++..++.+ ..++.+++|+............. ..+..
T Consensus 303 ~~d~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~ 375 (466)
T COG2319 303 SSDGTVRLWDLETGKLL--SSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH----SNVLS 375 (466)
T ss_pred eCCCcEEEEEcCCCceE--EEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC----ceEEE
Confidence 88888999988753211 1111 11222346778884333555555 57788999999877622222111 11567
Q ss_pred EEEcCCCcEEEE-EeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 246 ASFTPDSKYVIS-GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 246 ~~~sp~~~~l~t-gs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+.+++ ...+.. ++.++.+.+|+............ +...+....+.+++..+++++ ..++.|...
T Consensus 376 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 376 VSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEECC-CCCEEEEecCCCceEEEecccCeeeeeccC-CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 88888 544444 78899999999987766655433 227899999999999988753 568888653
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-18 Score=151.54 Aligned_cols=275 Identities=16% Similarity=0.267 Sum_probs=203.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 102 (335)
.|..++|-|||+.|+.+.. ..+.+||...|..+.++.+|+..|++++|+.++. .+++++.|..|.+|+..-...++.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCc--eeccCCCceeEEEecccccceeee
Confidence 8999999999998777754 4788999999999999999999999999998755 678999999999998765444432
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
.|++.|.|+.|+|-...|+||+-. ..-+|......... ..........+|..||++++.|-.+|+|.+-+-...
T Consensus 91 --SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-- 164 (1081)
T KOG1538|consen 91 --SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-- 164 (1081)
T ss_pred --ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC--
Confidence 499999999999999999999853 34688765433221 111122345679999999999999999988654332
Q ss_pred CceeeEEeccCCCccceEEEEccCCC-----EEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGK-----YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~-----~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
+...+.-..+.+.++-+++|+|... .+++..-+.++.+|.+.. +.+..- ..-.-.+.++.+.|+|.++..
T Consensus 165 -ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~---r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 165 -EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKD---RALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred -cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeeccc---ccCCCCchhheeccCCcEEEE
Confidence 2222333344566788999998643 455555556666665542 222111 111224567899999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccccc
Q psy16316 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYL 313 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~ 313 (335)
|+.|+-+++|.- +|-+..++.. ...+|++|+.+|++++.+.|+ +++.+|++-++
T Consensus 240 GGsdk~L~~fTR-~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR-DGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ccCCCceEEEee-cCeEEeeccc-cceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 999999999974 5777777743 567999999999999999886 67888876444
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=146.24 Aligned_cols=246 Identities=15% Similarity=0.242 Sum_probs=182.5
Q ss_pred cccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCC
Q psy16316 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~ 139 (335)
..++.++.|+|... ++..++.|+++++|-++.. ..++.+.--..+|.++.|.|+|. .+++++.-..+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 45688999988655 4556778999999988654 44555554567999999999998 8999999999999999887
Q ss_pred CceeEEEecCC----cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 140 NCQGIMHVSGS----RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 140 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
+...+..+.+. .....+++++++++..+..|.|.+....+.+- ...+ ..+..+..++|+.|++.|++.+.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~----KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSF----KIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hhee----eeccEEeeEEEecCCcEEEEEcC
Confidence 76554433222 23456789999999999999999877654321 1111 12345678999999999999999
Q ss_pred CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC------eeEEEeCCCCCCCeEEE
Q psy16316 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG------FKVCVLDADHPSPVQTI 289 (335)
Q Consensus 216 ~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~------~~~~~~~~~h~~~v~~v 289 (335)
+|.|++||++...|+.++..-... +-+.++.++++.+||+||..|-|.|||..+. ..+..++ .-+..|+++
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl 441 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAITSL 441 (514)
T ss_pred CceEEEEecCCcceEEEEeecCcc--ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeeeee
Confidence 999999999999998887532221 2356888999999999999999999996532 2233332 245689999
Q ss_pred EeCCCCcEEEeeec----eeEE---ecccccccccCC
Q psy16316 290 QFNPKFNMMASACT----NLAF---WIPTYLSNHQEP 319 (335)
Q Consensus 290 ~~sp~~~~~~s~~~----~~~~---w~~~~~~~~~~~ 319 (335)
+|+|++++||.++. .+++ =+.+..+|.|.+
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~ 478 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS 478 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeeccCCCC
Confidence 99999999998873 2333 233566666554
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=138.06 Aligned_cols=284 Identities=16% Similarity=0.168 Sum_probs=180.4
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.-++++|.+.|+++.|..++. |.+|..-|.+++|++++......+. .+...+..+...+. ..+.+-+.|..+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEEEE
Confidence 346789999999999999986 8899999999999999887665555 33444555544443 234456689999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCC---------CEEEEee--CCCcEEEeecCCCCceeEEE-----ecCCcceEEE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPID---------DTFISGS--YDKTVRLWDLRSPNCQGIMH-----VSGSRPIAAF 156 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~---------~~l~s~s--~D~~i~vWd~~~~~~~~~~~-----~~~~~~~~~~ 156 (335)
++..+..+. -|.=.++++.|.+.. +.++.-+ .|. +.+=|........... ..+...+..+
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCceeeeec
Confidence 998876544 355566677776531 1111111 111 1122221111111000 0111111111
Q ss_pred CC-C--CCEEEEEEcCCeEEEEEccCCCCCceeeEE-------eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy16316 157 DP-E--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFK-------FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 157 ~~-~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~ 226 (335)
.. + ..++++|.++|.+-+||+..... ...++ ....+..++.++.+.+....=++++.+..+..|++..
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 11 1 23567899999999999986421 11111 1223455677888877655556667777788887653
Q ss_pred --CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec-
Q psy16316 227 --GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT- 303 (335)
Q Consensus 227 --~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~- 303 (335)
+.+.-..+.-..+ --+..+.+-||++.+||++.|++||+|+..+...+..+. .|.+.|++|+|+|+.+++|+++.
T Consensus 237 s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 237 STGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred ccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCC
Confidence 3321111100111 124568899999999999999999999998888777774 59999999999999999999975
Q ss_pred -eeEEec
Q psy16316 304 -NLAFWI 309 (335)
Q Consensus 304 -~~~~w~ 309 (335)
.|.+|.
T Consensus 315 ~rISLWk 321 (323)
T KOG0322|consen 315 ARISLWK 321 (323)
T ss_pred ceEEeee
Confidence 477774
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-17 Score=153.16 Aligned_cols=290 Identities=11% Similarity=0.176 Sum_probs=195.3
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc---ccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK---YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
+...+-..+.|+|=...++++...-.|++||.+.++....+..+. ..|+.+.+-...+..++..++.||.||+|+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 444467789999999999999988899999999988766554433 34777777777777777888899999999642
Q ss_pred C-----CceEee---ecCCC----CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEEC---CCC
Q psy16316 96 D-----NKYIRY---FPGHT----KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFD---PEG 160 (335)
Q Consensus 96 ~-----~~~~~~---~~~H~----~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~---~~~ 160 (335)
. .+.+.- +.++. +.=.-++|..+...|+++|.-..|||||.....+..-+.......+.+++ +.|
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 2 222222 22221 11134567666667777777899999999877665444333322223333 458
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE-EEEEeCCCeEEEEECCCCeeeee--ecccc
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY-ILISTNGSIIRTFDAYNGQCLQT--LAGFL 237 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~i~i~d~~~~~~~~~--~~~~~ 237 (335)
+++++|..||.|++||.|...........-.......+..+.+-+.|-- |++++.+|.|++||++....... +..+.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 9999999999999999986443211111111111222677888876654 99999999999999987422222 22222
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC------CCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD------ADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~------~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
...+..+++..|+....+|+|+. +.|+||++. |.++..+. ....+.+.+++|||--.++|.|. ..+.+|.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 22224678999999999999999 899999985 33322221 12335679999999988888885 4577775
Q ss_pred c
Q psy16316 310 P 310 (335)
Q Consensus 310 ~ 310 (335)
.
T Consensus 1380 ~ 1380 (1387)
T KOG1517|consen 1380 C 1380 (1387)
T ss_pred c
Confidence 3
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-15 Score=134.58 Aligned_cols=271 Identities=13% Similarity=0.124 Sum_probs=169.8
Q ss_pred EEEecCCCeEEEEEccCCcc---eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-Cce--EeeecCCCCC
Q psy16316 36 LISCSEDDQIVIYDCELGTN---KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKY--IRYFPGHTKK 109 (335)
Q Consensus 36 lasgs~Dg~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~--~~~~~~H~~~ 109 (335)
+++...|+.|++||+.+... ...+. .......+++++++...+++ +..++.+..|++.. ++. +.... ..+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~-~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVG-VRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEE-ECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 44457799999999964322 22322 23456677888877655443 34578899999863 332 22222 2335
Q ss_pred eEEEEECCCCCEEEEeeC-CCcEEEeecCCCC-ceeEEE---ecCCcceEEECCCCCEEE-EEEcCCeEEEEEccCCCCC
Q psy16316 110 VNSLCLSPIDDTFISGSY-DKTVRLWDLRSPN-CQGIMH---VSGSRPIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKG 183 (335)
Q Consensus 110 V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~ 183 (335)
...++++|++++|++++. ++.|.+||+.... ...... .......+.++|+++++. +...++.|.+||+......
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 678999999998888764 8999999997432 211111 111223467899998775 5556799999999752111
Q ss_pred c---eeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCC--Ce--eeeeecccc---cCCCCceEEEEcCCC
Q psy16316 184 P---FSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYN--GQ--CLQTLAGFL---NNKGCPLEASFTPDS 252 (335)
Q Consensus 184 ~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~--~~--~~~~~~~~~---~~~~~v~~~~~sp~~ 252 (335)
. ...... ........++|+|++++++++.. ++.|.+|++.. ++ .+..+.... .....+..+.|+|++
T Consensus 162 ~~~~~~~~~~--~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 162 VAQEPAEVTT--VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccCCCceec--CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 0 000111 11122357899999999988876 78999999873 22 233332111 112234568899999
Q ss_pred cEEEEEeC-CCcEEEEECCCCe----eEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccc
Q psy16316 253 KYVISGST-DGRIHIWNAEKGF----KVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYL 313 (335)
Q Consensus 253 ~~l~tgs~-dg~v~iwd~~~~~----~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~ 313 (335)
++|+++.. ++.|.+|++.... .......+ .....++|+|+|++++++. +++.+|..+..
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 99888865 6889999985432 22222221 2345789999999888664 46888866433
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-18 Score=139.99 Aligned_cols=257 Identities=18% Similarity=0.271 Sum_probs=160.2
Q ss_pred cceeeeccCCccEEEEEECC--CCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeec----C
Q psy16316 12 KVAKLFRENTDKITSIDYSA--DGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHAST----K 84 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~--~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~ 84 (335)
+..+.|++|.+.++.++|.. .+..+.||+.||+||+||+.+......+.- ...+-...+|...-...+++.+ .
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 34457889999999999987 456899999999999999987755443322 2222233334333233344433 3
Q ss_pred CCCeEEEEEcCCCce-Eee-ecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCc----eeEEEecCCcceEEEC
Q psy16316 85 IDDTVRYLSLHDNKY-IRY-FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNC----QGIMHVSGSRPIAAFD 157 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~-~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~----~~~~~~~~~~~~~~~~ 157 (335)
.|..+.+||++..+. ++. .+.|.+.|+++.|+|+. ++|+|||.||.|.++|++.... ..++....++..+.|.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 577899999987654 544 56899999999999975 7999999999999999976532 2334444455566665
Q ss_pred CCC-CEEEEEEcCCeEEEEEccCCCCCceeeEEec--------cCCCccceEEEEcc-CCCEEE-EEeCCCeEEEEE---
Q psy16316 158 PEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA--------AEKECDWTGIKFSA-DGKYIL-ISTNGSIIRTFD--- 223 (335)
Q Consensus 158 ~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~-~~~~l~-~~~~~~~i~i~d--- 223 (335)
..+ +.+.+-+...+..+|+++.... ...+... .+..+.+---..+| +...++ .++.-+...++-
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~--~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSE--ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCCh--hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeee
Confidence 554 4566777889999999986431 1111100 00001110011223 223333 333234444443
Q ss_pred CCCCeeeeeeccccc-CCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 224 AYNGQCLQTLAGFLN-NKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
..++.....+.-..+ +...+.++.|...+.++.|||+||.+.+|...
T Consensus 299 ~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 233333222222222 44456677888888999999999999999853
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=142.99 Aligned_cols=200 Identities=19% Similarity=0.253 Sum_probs=141.3
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
.+++|+.+|..|++|+.||++|||+...- ..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------------------------------------------~t~l~e~ 183 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------------------------------------------LTILEEI 183 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------------------------------------------hhhhhhH
Confidence 57788888888888888888888874322 2233355
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec---CCcceEEECCCC-----CEEEEEEcCCeEEEEE
Q psy16316 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS---GSRPIAAFDPEG-----LIFGVGVNSDTIKLYD 176 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~d~~v~iwd 176 (335)
.|.+.|.+++|+||+..|+|-+.| ..+|||.+++.+....... .......|..++ .+++.....+.|..||
T Consensus 184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 788999999999999999999999 8999999988554332211 111223344444 2333334456677777
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
+....................+++++.+++|++++.|+.+|.|.+++..+.+++.-+.. .|...|+.+.|+||.++++
T Consensus 263 ~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 263 ISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred eeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCccc
Confidence 65433221111111122233568899999999999999999999999999888776543 2455789999999999999
Q ss_pred EEeCCCcEEEEECCC
Q psy16316 257 SGSTDGRIHIWNAEK 271 (335)
Q Consensus 257 tgs~dg~v~iwd~~~ 271 (335)
+-+.|.+..+..+.-
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999987754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-15 Score=132.85 Aligned_cols=254 Identities=13% Similarity=0.161 Sum_probs=160.9
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEe-cCCCeEEEEEccC-Ccc--eeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISC-SEDDQIVIYDCEL-GTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasg-s~Dg~i~lwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
+.+.+. +.+....+.++|+|++|+.+ ..++.|.+|+++. +.. ..... .......+.+.+++...+.+ ...++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~-~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSA-SYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEE-EcCCCe
Confidence 344454 34567789999999987665 4689999999963 322 11111 12245667888776655444 334899
Q ss_pred EEEEEcCCCc----eEeeecCCCCCeEEEEECCCCCEEE-EeeCCCcEEEeecCCCCcee-----EEE--ecCCcceEEE
Q psy16316 89 VRYLSLHDNK----YIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQG-----IMH--VSGSRPIAAF 156 (335)
Q Consensus 89 i~~~~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~i~vWd~~~~~~~~-----~~~--~~~~~~~~~~ 156 (335)
+.+|++++.. .+..+.+ .....+++++|++++++ +...++.|.+||+.+..... ... .......+.|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999997432 2333333 34567788999998875 55567999999997632211 111 1122234689
Q ss_pred CCCCCEEEEEEc-CCeEEEEEccCCCCC--ceeeEEeccC---CCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCee
Q psy16316 157 DPEGLIFGVGVN-SDTIKLYDVRSFDKG--PFSNFKFAAE---KECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQC 229 (335)
Q Consensus 157 ~~~~~~~~~~~~-d~~v~iwd~~~~~~~--~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~ 229 (335)
+|+++++.++.. +++|.+||+...... .......... .......+.++|++++++++.. ++.|.+|++.....
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 999998877765 899999999742111 1111111100 1111235889999999999854 67899999864322
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeC-CCcEEEEECC
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIWNAE 270 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~~ 270 (335)
..++.++......+..+.|+|||++|++++. +++|.+|+..
T Consensus 263 ~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2222222222234667999999999988776 8899999874
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=162.22 Aligned_cols=243 Identities=17% Similarity=0.234 Sum_probs=183.3
Q ss_pred ccEEEEEECCCCCE----EEEecCCCeEEEEEccC---C---cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 22 DKITSIDYSADGLL----LISCSEDDQIVIYDCEL---G---TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 22 ~~V~~v~~s~~g~~----lasgs~Dg~i~lwd~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+-+.++|.+.|.. +|.|..||+|.+||... + ..+.+...|...|..+.|.+.. ..++++|+.|+.|.+
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q-~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ-GNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC-CceeeccCCCCcEEE
Confidence 34578999998876 89999999999999865 2 2234556688889999998753 457889999999999
Q ss_pred EEcCCCceEeeec--CCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEec---CCcceEEECCCC-CEEE
Q psy16316 92 LSLHDNKYIRYFP--GHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVS---GSRPIAAFDPEG-LIFG 164 (335)
Q Consensus 92 ~~~~~~~~~~~~~--~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~ 164 (335)
||+..-+....+. .-.+.|.+++|+..- ..|++++.+|.+.|||++..+.+-.+... .....+.|+|+. ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444442 245789999999864 57899999999999999987544322211 123467899986 4455
Q ss_pred EEEcC---CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCC
Q psy16316 165 VGVNS---DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 165 ~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
+++.| -.|.+||+|... .+.. ....|...+.++.|.+.+ .+|++++.|+.|.+|+.++++.+..+-. ..
T Consensus 224 ~As~dd~~PviqlWDlR~as-sP~k---~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~ 296 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFAS-SPLK---ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QG 296 (1049)
T ss_pred eecCCCCCceeEeecccccC-Cchh---hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---CC
Confidence 56554 379999998643 2222 223455667889999887 7888889999999999999998877754 34
Q ss_pred CCceEEEEcCCCc-EEEEEeCCCcEEEEECCCC
Q psy16316 241 GCPLEASFTPDSK-YVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 241 ~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~ 272 (335)
.....+.|.|... .++.++-||+|.|+.+...
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 5677899999655 8999999999999998644
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=147.71 Aligned_cols=230 Identities=20% Similarity=0.327 Sum_probs=150.3
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCC--EEEEEEcCCeEEEEE
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL--IFGVGVNSDTIKLYD 176 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~v~iwd 176 (335)
+-..|+||++.|.+++..|.|.+|++|+.||+||+|.+.+++|+..+...+.+.+++|.|.+. ++|++... .+.|.+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 345688999999999999999999999999999999999999999999999999999998764 34444333 344544
Q ss_pred ccCCCC------------CceeeE------E--------------eccCCCccceE------------------------
Q psy16316 177 VRSFDK------------GPFSNF------K--------------FAAEKECDWTG------------------------ 200 (335)
Q Consensus 177 ~~~~~~------------~~~~~~------~--------------~~~~~~~~~~~------------------------ 200 (335)
..-+.. .+.... . ....+...++.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 221100 000000 0 00001112233
Q ss_pred ---------------------EEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 201 ---------------------IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 201 ---------------------~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
+.|+|.-.+|++++. +.|++||+..++.++.+.. ....+..++.||.|..|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t---g~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT---GSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc---CCeeeeeeeecCCCCeEEEec
Confidence 445555555544432 3455555555444444332 223456789999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc-cccccccCCCC-----ccceEEE--E
Q psy16316 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP-TYLSNHQEPDT-----IDNLKIY--L 329 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~-~~~~~~~~~~~-----~~~~~~~--~ 329 (335)
.|+++..+|+.-+.+....-..|+..|++|+||+..++++||+ +++.++-. =..+..++|-+ +++++.- +
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence 9999999999866554333345999999999999999999996 45554422 23344344433 3444444 6
Q ss_pred Eeee
Q psy16316 330 GVLC 333 (335)
Q Consensus 330 ~~~~ 333 (335)
|+++
T Consensus 707 gVLd 710 (733)
T KOG0650|consen 707 GVLD 710 (733)
T ss_pred ceEe
Confidence 6663
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=144.20 Aligned_cols=191 Identities=21% Similarity=0.263 Sum_probs=143.8
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
|+.++.+....|.++|.|-+|+|||.-|+|+|.||.|++|.- +|-...++.....++.+++|.|+++..+++.+ +.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g---~h 167 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG---GH 167 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC---Ce
Confidence 455666778899999999999999999999999999999985 33322333445567999999999887776654 45
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+.+--+.....+-..++|.+-|.+++|++..+.++||++|-..++||-..........+...++.++|.|+ ..++.++.
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee
Confidence 55556655555566889999999999999999999999999999999754333223344566778899999 66666654
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRT 221 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i 221 (335)
+++++ .+ .....+..++|||||..+++|+..|.+.+
T Consensus 247 -nt~R~---~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 247 -NTARF---SS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -eeeee---cC-------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 34442 11 12334567899999999999988886543
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-17 Score=141.37 Aligned_cols=263 Identities=11% Similarity=0.145 Sum_probs=175.9
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEE-----EEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLI-----RFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.|..-|.|+.|+.+...+.+++++-.++-||+.+.+.........+-.+.. .-...+....++.++.||...+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 577788899999999888777766666666665443211111111111111 111112233455556788888776
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce-eEEEecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ-GIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
+.++..+...+|.+.|.+-.|+|+|.-|+|+++||.|++|.- ++-.. .+.+....+.+++|.|+.+-++-+.. +.+
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~ 168 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHI 168 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-CeE
Confidence 345566778899999999999999999999999999999984 33322 22345566778899998765554432 344
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
.|=.+.. .. ..+++ ..+..-+.++.|++..+.+++|++|-.-++||......+. ...+..++++++|.|+
T Consensus 169 ~IKpL~~-n~---k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~----S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 169 SIKPLAA-NS---KIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT----SAAEEYAITSVAFNPE- 238 (737)
T ss_pred EEeeccc-cc---ceeEE-eccCcEEEEeecCccccceeecCCceeEEeecccCccccc----CChhccceeeeeeccc-
Confidence 4433322 11 12222 2344567789999999999999999999999976543222 2335667899999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEE
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAF 307 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~ 307 (335)
+.++.||.+ +++ +...-.+.|..++|||||.+++.|+++..+
T Consensus 239 ~~~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 239 KDYLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred cceeeeeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceE
Confidence 777777753 222 344467899999999999999999877554
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=127.90 Aligned_cols=239 Identities=17% Similarity=0.275 Sum_probs=170.3
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
....+....|+.+...|..|+.||. ++++.+..+.. ......++..+-.-.......+++....+.+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~--~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC--FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHHh--hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce
Confidence 3456777889999999999999986 78887654431 11123344444444444444455555556788999888777
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECC--CCCEEEE--EEcCCeEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDP--EGLIFGV--GVNSDTIK 173 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~--~~~d~~v~ 173 (335)
+..+. ....|.++.++.+ .|+-+-.+. |.|+|++.-+....+... ....+.++++ .+.+++. ..+.|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 66554 4578999999874 555555444 999999987766554322 3333555555 4457665 34568999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe-EEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI-IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
+||..+... .. ...-|...+.+++|+|+|.+||++++.|+ ||+|.+.+|+.+.+++.-.. ...+.+++|+|++
T Consensus 157 l~d~~nl~~--v~---~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 157 LFDTINLQP--VN---TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDS 230 (391)
T ss_pred EEEccccee--ee---EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCC
Confidence 999976432 22 22345677889999999999999998876 99999999999988875333 3457789999999
Q ss_pred cEEEEEeCCCcEEEEECCC
Q psy16316 253 KYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~ 271 (335)
++|++.|..++|++|.+++
T Consensus 231 ~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CeEEEecCCCeEEEEEecc
Confidence 9999999999999998753
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9e-16 Score=140.65 Aligned_cols=236 Identities=15% Similarity=0.151 Sum_probs=160.6
Q ss_pred CCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-CCCeEEEEEcCCCce--EeeecCCCCCeEEEEECC
Q psy16316 41 EDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-IDDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSP 117 (335)
Q Consensus 41 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~--~~~~~~H~~~V~~~~~~~ 117 (335)
.+..|.+||.+.. ..+.+..+...+...+|+|++...+..+.. .+..+.+||+.+++. +..+++|.. .++|+|
T Consensus 182 ~~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---~~~wSP 257 (429)
T PRK01742 182 QPYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---APAFSP 257 (429)
T ss_pred ceEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC---ceeECC
Confidence 3579999998644 355566666778899999998776555432 235799999988753 444555543 689999
Q ss_pred CCCEEEEee-CCCcEEEe--ecCCCCceeEEEecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccC
Q psy16316 118 IDDTFISGS-YDKTVRLW--DLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 118 ~~~~l~s~s-~D~~i~vW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
+|+.|+.++ .|+.+.+| |+.++................|+|+|..++..+ .++...||+++.... ..... .
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-~~~~l----~ 332 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-GASLV----G 332 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-CeEEe----c
Confidence 999887764 68876665 665555443333333345678999998766554 567889998764222 11111 1
Q ss_pred CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC--C
Q psy16316 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE--K 271 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~--~ 271 (335)
... ...+|+|+|++++..+.++ +.+||+.+++........ ....+.|+|||++|+.++.++.+.+|.+. +
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-----LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-----CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 111 2367999999998887765 556999888654322221 12347899999999999999988888753 4
Q ss_pred CeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 272 GFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 272 ~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
+.....+. .|.+.+..++|||-
T Consensus 405 G~~~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEcc-CCCCCCCCcccCCC
Confidence 66666664 57888999999995
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-16 Score=127.93 Aligned_cols=276 Identities=17% Similarity=0.280 Sum_probs=186.0
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG 105 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 105 (335)
-+.|||+|+++|+++.- .+.|-|.++-+..+ ++..-..+.-+-|..++.. +++....++.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q-lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ-LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH-HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEEecc
Confidence 35799999999999876 77888887665432 2222334555666665543 344455688999999988887777888
Q ss_pred CCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC---------------
Q psy16316 106 HTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS--------------- 169 (335)
Q Consensus 106 H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------------- 169 (335)
..+++.+++|+|+|+ .|.+...|-.|.+|.+.+..+..+-+........+|+|+|++.+.++.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 889999999999995 6677788999999999998877766666667788999999988776532
Q ss_pred ---------------------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q psy16316 170 ---------------------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 170 ---------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
+.+.+||--- .... ...+....+..++|+|-+.++++|+.|+.+|+.+-.+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchh----hhee--eeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 2233333110 0000 011222344568899999999999999998877643222
Q ss_pred eeeee------------------------------------------------------------c---ccccCCCCceE
Q psy16316 229 CLQTL------------------------------------------------------------A---GFLNNKGCPLE 245 (335)
Q Consensus 229 ~~~~~------------------------------------------------------------~---~~~~~~~~v~~ 245 (335)
.+.++ + ...+....+--
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 11000 0 00011111224
Q ss_pred EEEcCCCcEEEEEeCC--CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 246 ASFTPDSKYVISGSTD--GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~d--g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
++|++|..++||-.+. ..+-+||+.+-+.-..+.+. .+|....|+|..+.++.+. ..+..|.+..
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk--~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK--HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc--cceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 7899999999998754 45899999765544445443 4789999999987766554 4566676644
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-15 Score=135.65 Aligned_cols=299 Identities=13% Similarity=0.182 Sum_probs=204.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccC--Cc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL--GT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.|+-.++|.++||+++++|+|..||.|.+|.--. .. ....+.=|...|..++|++++ ..+.+|+.++.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC--ceEeecccceEEEEEee
Confidence 5777799999999999999999999999996422 11 122233366788999998765 46778899999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE------------EecCCcceEEECCCCCE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM------------HVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 162 (335)
.+++ .+.++--.++|..+.++||+...+....|+.|.+-.+.+-.....+ ...+-...+.++|..+.
T Consensus 281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 9988 5666666789999999999999999999999999876443221111 11222345678887778
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEecc--------CCCccceEEEEccCCCEEEEEe--------CC--CeEEEEEC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAA--------EKECDWTGIKFSADGKYILIST--------NG--SIIRTFDA 224 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~--------~~--~~i~i~d~ 224 (335)
++..+..+.|.+||+-+-.. ..++.... .....+..++.+..|.++++.- .| ..+++|.-
T Consensus 360 ~vln~~~g~vQ~ydl~td~~--i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDST--IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred eeecCCCceEEEEeccccce--eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 88888999999999875322 22222111 1112345677777888887653 22 24778864
Q ss_pred CCC----eeeeeecccccCCCCceEEE-EcCCCc-EEEEEeCCCcEEEEECC---------CCeeEEEeCCCCCCCeEEE
Q psy16316 225 YNG----QCLQTLAGFLNNKGCPLEAS-FTPDSK-YVISGSTDGRIHIWNAE---------KGFKVCVLDADHPSPVQTI 289 (335)
Q Consensus 225 ~~~----~~~~~~~~~~~~~~~v~~~~-~sp~~~-~l~tgs~dg~v~iwd~~---------~~~~~~~~~~~h~~~v~~v 289 (335)
... .....+.. .|...+...+ ++|... .++|+|.||.++||-+. +.+.+..+...|..+++.+
T Consensus 438 n~~~kt~~L~T~I~~--PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~ 515 (792)
T KOG1963|consen 438 NPNSKTFILNTKINN--PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL 515 (792)
T ss_pred cCCcceeEEEEEEec--CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccch
Confidence 322 22223322 2333333334 444444 89999999999999872 3455555555688999999
Q ss_pred EeCCCCcEEEee-eceeEEecccccccccCCCCccc
Q psy16316 290 QFNPKFNMMASA-CTNLAFWIPTYLSNHQEPDTIDN 324 (335)
Q Consensus 290 ~~sp~~~~~~s~-~~~~~~w~~~~~~~~~~~~~~~~ 324 (335)
+|+.+|..++.+ +..|.+|.++-+...+.....++
T Consensus 516 ~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 516 CFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred hhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence 999999988876 56799998876544444333333
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-16 Score=131.96 Aligned_cols=252 Identities=14% Similarity=0.218 Sum_probs=171.8
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--------C-----C---cceeeeecccccceEEEEecCCC
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--------L-----G---TNKRTVFSKKYGVDLIRFTHAKQ 76 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--------~-----~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (335)
....|..|+++|++|.|+|+|.+||||+++|.+.+|... + . ...+.+.+|...+..++|.+++.
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 345688999999999999999999999999999999765 2 0 11234455677788899988765
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE----------
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---------- 146 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---------- 146 (335)
++.+++.|+.+++||+..++....+.+|...|..++|.|-++++++=|.|...+..++...+......
T Consensus 137 --~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 137 --FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFN 214 (434)
T ss_pred --eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccC
Confidence 45566689999999999999999999999999999999999999999999988888776543221110
Q ss_pred -----------ecCCc---ceEEECCCCCEEEEEEc----CC-----eEEEEEccCCCCCceeeEEeccCCCccceEEEE
Q psy16316 147 -----------VSGSR---PIAAFDPEGLIFGVGVN----SD-----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKF 203 (335)
Q Consensus 147 -----------~~~~~---~~~~~~~~~~~~~~~~~----d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (335)
..... ....|.|+|.++++... ++ +..+|+-... ..|...+.. .....-.+.|
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-~rP~~~lp~---~~k~~lavr~ 290 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-KRPAARLPS---PKKPALAVRF 290 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc-cCceeecCC---CCcceEEEEe
Confidence 00000 12457899988876531 11 2222221110 111111110 0001111111
Q ss_pred ------------------ccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 204 ------------------SADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 204 ------------------s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
-|-.-.+++++. ..|.+||.++.+.+..+... |...++.++|++||..|+..|.||.+.
T Consensus 291 ~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~ni--hy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 291 SPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNI--HYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred eeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeee--eeeeecceeecCCCcEEEEeccCCceE
Confidence 233334566654 56999999987766555433 455678899999999999999999988
Q ss_pred EEECCCCe
Q psy16316 266 IWNAEKGF 273 (335)
Q Consensus 266 iwd~~~~~ 273 (335)
+-.++..+
T Consensus 368 ~vtfe~~e 375 (434)
T KOG1009|consen 368 LVTFEPWE 375 (434)
T ss_pred EEEEcchh
Confidence 87766543
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-16 Score=128.27 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=190.4
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce--EeeecCCC-CCe
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY--IRYFPGHT-KKV 110 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~H~-~~V 110 (335)
..+|++-..|+|++||..++...+.+.++...++.++|........+.+++.||+||+||++.... ...+.+|. .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 468888899999999999998888888888888899998765666677888899999999987644 34556676 466
Q ss_pred EEEEECCCCCEEEEee----CCCcEEEeecCCCCc-eeEE--EecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 111 NSLCLSPIDDTFISGS----YDKTVRLWDLRSPNC-QGIM--HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 111 ~~~~~~~~~~~l~s~s----~D~~i~vWd~~~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
.|++.+..++.+++|. .|-.|.+||+|..+. +..+ .+...++.+.|+| +.+++++|+.||-|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7888877778888875 478899999998765 3332 3455567778888 568999999999999999875211
Q ss_pred CceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccc---------cCCCCceEEEEcC-C
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFL---------NNKGCPLEASFTP-D 251 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~sp-~ 251 (335)
-..+.........+..+.|..++ +.+.+-+.....++|+++.+.+...+.... .....+.. ..+| +
T Consensus 201 --eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~ 277 (376)
T KOG1188|consen 201 --EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGD 277 (376)
T ss_pred --hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCC
Confidence 01111112233345678887776 346666778889999999887655443210 00111222 2234 4
Q ss_pred CcEEEEEeC-CCcEEEEECC---C---CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 252 SKYVISGST-DGRIHIWNAE---K---GFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 252 ~~~l~tgs~-dg~v~iwd~~---~---~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
...++.++. -++..++-+. + ...+..+..+|..-|.++.|...+.++.+|+ +-+.+|-
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 556666655 5666666443 2 2334445566888899999998899999996 6688996
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=134.21 Aligned_cols=197 Identities=17% Similarity=0.218 Sum_probs=140.8
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeecCCCCce-eEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEE
Q psy16316 111 NSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ-GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189 (335)
Q Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~ 189 (335)
.+++|+.+|..|++|+.||++|+|+..+.... ....+...+..+.|+||++++++-+.| ...+|+.++.. .+.. +
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~--~~a~-~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA--ALAR-K 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc--hhhh-c
Confidence 68899999999999999999999996554333 233445567778999999999999888 99999998742 1111 1
Q ss_pred eccCCCccceEEEEccCC---CE--EEEEeCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 190 FAAEKECDWTGIKFSADG---KY--ILISTNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 190 ~~~~~~~~~~~~~~s~~~---~~--l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
...+..-.+..+.|+.++ .+ ++.....+.|+.|++...+. .-...........+.+++.+++|+++|.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 111222234557787777 33 33344567788887654322 111122222234578899999999999999999
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--eeEEeccc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFWIPT 311 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~~ 311 (335)
.|-|++..+-.+....+..|...|+.|.|+|+..++++.+. ..++-.+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998877788788889999999999999988887653 45554433
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-15 Score=136.21 Aligned_cols=264 Identities=13% Similarity=0.156 Sum_probs=178.9
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce--E----eeecCCCCCeEEEEE
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY--I----RYFPGHTKKVNSLCL 115 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~----~~~~~H~~~V~~~~~ 115 (335)
++.+.||++.........+.....+.++.|.+... .++++|..+|.|.+||+..+.. . .....|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 35799999988755555566677888999988644 4566777899999999987654 2 223468899999999
Q ss_pred CCCC--CEEEEeeCCCcEEEeecCCCCcee------E-E------EecCCcceEEECC-CCCEEEEEEcCCeEEEEEccC
Q psy16316 116 SPID--DTFISGSYDKTVRLWDLRSPNCQG------I-M------HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 116 ~~~~--~~l~s~s~D~~i~vWd~~~~~~~~------~-~------~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~ 179 (335)
..+- .-++++|.||.|..|+++--.... . . ........+.|.+ +.+.|++|++.|.|.--.-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7643 459999999999999986433210 0 0 1112234566666 457899999999887633222
Q ss_pred CCCCc---eeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC-CCeeeeeecccccCCCCceEEEEcCCC-cE
Q psy16316 180 FDKGP---FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTPDS-KY 254 (335)
Q Consensus 180 ~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~ 254 (335)
..... ........-+...+..+.++|=+..++.++.|-++++|... ....+..+. .+...+.+++|||.. ..
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceE
Confidence 11111 01111223345567889999988887777779999999876 333332222 234457889999975 57
Q ss_pred EEEEeCCCcEEEEECCCCee--EEEeCCCCCCCeEEEEeCCCCcEEEeeece--eEEecc
Q psy16316 255 VISGSTDGRIHIWNAEKGFK--VCVLDADHPSPVQTIQFNPKFNMMASACTN--LAFWIP 310 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~--~~~w~~ 310 (335)
|+++..||+|.+||+..... +..... +....+.+.|+++|.+++.|+.+ +.+|.+
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEEEcCCCceehhhhhccccCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 89999999999999865432 222222 35567778889999999999855 455543
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-15 Score=118.53 Aligned_cols=196 Identities=17% Similarity=0.284 Sum_probs=135.6
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc----eee----eeccc-----ccceEEEEecCCCeeEEee
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN----KRT----VFSKK-----YGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~----~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~ 82 (335)
.+++|.++|..+.|. ..+|++|++ |.|+=|...-... .+. ..-+. ..++.....|..+..+++.
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred eccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 358999999999999 456788876 9999997642211 110 11111 2345555555555554444
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC---------Ccce
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG---------SRPI 153 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~---------~~~~ 153 (335)
.|+.+.-||+++++..++++||++-|.++.--.....++||++||++|+||.+++++..++..-. ..-+
T Consensus 134 --GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 134 --GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred --CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 59999999999999999999999999999886666789999999999999999999877653211 1113
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 154 AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.++.-+..++++| ....+.+|.+++.+.... +.. ...+.-+.|. ...+++++.++.|.-|.+.
T Consensus 212 gala~~edWlvCG-gGp~lslwhLrsse~t~v--fpi----pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 212 GALAVNEDWLVCG-GGPKLSLWHLRSSESTCV--FPI----PARVHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEEeccCceEEec-CCCceeEEeccCCCceEE--Eec----ccceeEeeee--cceEEEeccccceeeeeec
Confidence 4455556666655 457899999998554332 222 1223345564 4467778888889888754
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=138.36 Aligned_cols=243 Identities=18% Similarity=0.278 Sum_probs=169.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
..+++++++|.+.|.||+|+.||+++|||+.|+.+.+|+-+....+ -++|...+.+..|.|-.... ++++. ..--
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~L--asCsL-sdFg 117 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQL--ASCSL-SDFG 117 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHh--hhcch-hhcc
Confidence 3456889999999999999999999999999999999986544332 25677788888887755432 23221 2234
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC---cceEEECCC-----CCE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS---RPIAAFDPE-----GLI 162 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~ 162 (335)
+|..+.....+ .+ -...|.+++|..||++|+-|-.||+|.+=+-...........++. +-.++++|. ..+
T Consensus 118 lWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 118 LWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred ccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 56554433221 11 235789999999999999999999999886544333333333332 234566663 246
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+++...+.++.++.+.... +...........++.+-|+|++++.|+.++.+.+|. +.|-.+.++.. ...+
T Consensus 196 ~aV~DW~qTLSFy~LsG~~------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~---~D~W 265 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGKQ------IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE---QDSW 265 (1081)
T ss_pred EEEEeccceeEEEEeccee------ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc---ccee
Confidence 6777777788887765311 110111123335688899999999999999999985 44544444433 4567
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+..+...|++++++.|..||+|.-||+.
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8899999999999999999999999874
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=130.88 Aligned_cols=204 Identities=17% Similarity=0.276 Sum_probs=147.2
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCcee-----E---EEecCCcceEEECCC-CCEEEEEEcCCeE
Q psy16316 103 FPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQG-----I---MHVSGSRPIAAFDPE-GLIFGVGVNSDTI 172 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~-----~---~~~~~~~~~~~~~~~-~~~~~~~~~d~~v 172 (335)
+.||+++|..++|+|- ++.++|||.|.+|.+|++-.+.... + ..+...+..+.|+|. .+.+++++.|++|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 4699999999999995 5789999999999999986543221 1 122233456788885 4788899999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
.+||+.+... ... ..+...+.++.|+.+|.+|++++.|+.||+||.++++.+..-.+|.+.. ...+.|-.++
T Consensus 157 ~iWnv~tgea--li~----l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k--~~Raifl~~g 228 (472)
T KOG0303|consen 157 SIWNVGTGEA--LIT----LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK--PARAIFLASG 228 (472)
T ss_pred EEEeccCCce--eee----cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC--cceeEEeccC
Confidence 9999987542 221 2256678899999999999999999999999999999888776665544 4567888888
Q ss_pred cEEEEEe---CCCcEEEEECCCCeeEEEe-CCCCCCCeEEEEeCCCCcEEEee---eceeEEecccccc
Q psy16316 253 KYVISGS---TDGRIHIWNAEKGFKVCVL-DADHPSPVQTIQFNPKFNMMASA---CTNLAFWIPTYLS 314 (335)
Q Consensus 253 ~~l~tgs---~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~~s~---~~~~~~w~~~~~~ 314 (335)
.++-||- .+..+-+||..+-.+...+ +.+-.+.|.--=|.|+.+++--+ +++|++|+.+...
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 8655554 4677999987654332211 12233455554567877665433 4679999875544
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=137.45 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=161.0
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC--------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEE
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD--------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~v 133 (335)
|...+....|.+.. ..+++++-|+++.+|++.. -+++.+|++|.++|.|+++.+.+..+.||+.||+|++
T Consensus 293 ~~d~ir~l~~~~se--p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 293 HDDCIRALAFHPSE--PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred chhhhhhhhcCCCC--CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 33444555554433 3456677899999999921 2457889999999999999999999999999999999
Q ss_pred eecCCCCc---------e-e-EEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEE
Q psy16316 134 WDLRSPNC---------Q-G-IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK 202 (335)
Q Consensus 134 Wd~~~~~~---------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (335)
|++....- . . ...+.+.+-.+++++....+++++.|+++++|+...... ..+....++..+ ..+.
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~P-lsvd 446 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYP-LSVD 446 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCccccCCc-ceEe
Confidence 97652211 0 0 111223333567888888899999999999999865321 112211221111 2333
Q ss_pred EccCCC-EEEEEeCCCeEEEEECCCCeeeeeeccc----ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE
Q psy16316 203 FSADGK-YILISTNGSIIRTFDAYNGQCLQTLAGF----LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 203 ~s~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~ 277 (335)
+-.... ..+++-.-+.-.+++++..+.+..+... ......+..+..+|+..+..++.+|+.|+++|..++..++.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 322221 1111111122223333333333333211 00112345678999999999999999999999998887776
Q ss_pred eCCCCCCCeEEEEeCCCCcEEEeeec--eeEEecccccccccC
Q psy16316 278 LDADHPSPVQTIQFNPKFNMMASACT--NLAFWIPTYLSNHQE 318 (335)
Q Consensus 278 ~~~~h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~~~~~~~~~ 318 (335)
.. .|...++++++-|+|.++++++. .+++|..+...-.++
T Consensus 527 ~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred ee-eccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 54 59999999999999999999975 578887654443333
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=120.80 Aligned_cols=252 Identities=21% Similarity=0.361 Sum_probs=172.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc----e-eeeeccc------------ccceEEEEecCCCeeEEe
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN----K-RTVFSKK------------YGVDLIRFTHAKQAAIHA 81 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~----~-~~~~~~~------------~~~~~~~~~~~~~~~~~~ 81 (335)
...+-|.+|.|...|.+||||..+|.|.++.-+.... . ..+..|. ..+..++|...++...+.
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3456799999999999999999999999997654331 1 1122222 236778998888888888
Q ss_pred ecCCCCeEEEEEcCCCce-----------------------------------Eeee-cCCCCCeEEEEECCCCCEEEEe
Q psy16316 82 STKIDDTVRYLSLHDNKY-----------------------------------IRYF-PGHTKKVNSLCLSPIDDTFISG 125 (335)
Q Consensus 82 ~~~~d~~i~~~~~~~~~~-----------------------------------~~~~-~~H~~~V~~~~~~~~~~~l~s~ 125 (335)
....|.++++|.+..... .+.+ .+|+--|++++++.|...++|+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 888899999998754321 1111 2688899999999999999988
Q ss_pred eCCCcEEEeecCC-CCceeEEEe--------cCCcceEEECCC-CCEEEEEEcCCeEEEEEccCCC-----CCcee----
Q psy16316 126 SYDKTVRLWDLRS-PNCQGIMHV--------SGSRPIAAFDPE-GLIFGVGVNSDTIKLYDVRSFD-----KGPFS---- 186 (335)
Q Consensus 126 s~D~~i~vWd~~~-~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~-----~~~~~---- 186 (335)
.|=.|.+|.+.- .++...+.. ..+++...|+|. ++.|+-.+..|+|++.|+|... .....
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 688899999863 333333322 123455678884 6889999999999999998411 10000
Q ss_pred --eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC-CCeeeeeeccccc---------CCCC---ceEEEEcCC
Q psy16316 187 --NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY-NGQCLQTLAGFLN---------NKGC---PLEASFTPD 251 (335)
Q Consensus 187 --~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~---------~~~~---v~~~~~sp~ 251 (335)
...+..+....+..++|+++|+|+++-. --+|++||+. ..+.+.+...|.. ...+ -..++|+-+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 0011111223456799999999998742 2579999983 3444444432211 1112 236899999
Q ss_pred CcEEEEEeCCCcEEEEECCCC
Q psy16316 252 SKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~ 272 (335)
+.+++|||....+++++...|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEecccccceEEEecCCCC
Confidence 999999999999999996654
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=123.69 Aligned_cols=203 Identities=21% Similarity=0.250 Sum_probs=142.5
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCC-------Cc-----eeEEEecCCcce---------EEECCCCCEEEEEE
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-------NC-----QGIMHVSGSRPI---------AAFDPEGLIFGVGV 167 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-------~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 167 (335)
....+.|+|||..|++-+.|..+++|++... .. ...++......+ ....|+.+++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4557899999999999999999999998421 11 111222211111 12468889999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC-CCCeeeeeec----ccccCCCC
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA-YNGQCLQTLA----GFLNNKGC 242 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~-~~~~~~~~~~----~~~~~~~~ 242 (335)
.+.-|++||.-+.+.+.......+.+.-..--+++|+|||.+|++| ..+.|++||+ +.|....... +..+..+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999998764322111111111111222469999999998876 5788999998 5554322221 22344677
Q ss_pred ceEEEEcCC-CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccc
Q psy16316 243 PLEASFTPD-SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYL 313 (335)
Q Consensus 243 v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~ 313 (335)
+.+++|+|. .+.+|.|+...++-|++-.....+..+ .+|.+.|+.+.|.|+|+.|.+|. ..|.+|..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 888999995 459999999999999987666666665 57999999999999999999985 45888865443
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=121.76 Aligned_cols=220 Identities=20% Similarity=0.322 Sum_probs=149.2
Q ss_pred CCCeEEEEEcCCCc---eEeeecCCCCCeEEEEECCCCC-EEEEeeCC-------CcEEEeecCCCCce---------eE
Q psy16316 85 IDDTVRYLSLHDNK---YIRYFPGHTKKVNSLCLSPIDD-TFISGSYD-------KTVRLWDLRSPNCQ---------GI 144 (335)
Q Consensus 85 ~d~~i~~~~~~~~~---~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D-------~~i~vWd~~~~~~~---------~~ 144 (335)
.|+.|.+..++... ..++|..|.+.|+.++-+|.++ .|+|+-.| ..+.+|.+...... ..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 47777777775432 2356778899999999999765 55555432 34679988643221 11
Q ss_pred EE--ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEe--ccCCCccceEEEEcc--CCCEEEEEeCCCe
Q psy16316 145 MH--VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF--AAEKECDWTGIKFSA--DGKYILISTNGSI 218 (335)
Q Consensus 145 ~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~l~~~~~~~~ 218 (335)
+. .-+.+.++.|.|++..+++- .++.|.+|++...... ...... ..+......+-+|+| +++.++ .+.|++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~t 194 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDST 194 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEE-EeCCCc
Confidence 11 11245678899988887655 5889999999763321 111111 122334456678888 555555 457889
Q ss_pred EEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCee-EEEeCCCCCCCeEEEEeCCCC-
Q psy16316 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGFK-VCVLDADHPSPVQTIQFNPKF- 295 (335)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~~-~~~~~~~h~~~v~~v~~sp~~- 295 (335)
++.||+++.++...+... |...+..+.|.|+-+ +|||+++||.|+|||...... +..+ .+|.-+|++|.|+|..
T Consensus 195 l~~~D~RT~~~~~sI~dA--Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDA--HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-PGHSHWVWAVRFNPEHD 271 (370)
T ss_pred EEEEEccchhhhcchhhh--hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-CCCceEEEEEEecCccc
Confidence 999999998877666543 334477899999876 589999999999999876543 3444 5699999999999976
Q ss_pred cEEEeeece--eEEecc
Q psy16316 296 NMMASACTN--LAFWIP 310 (335)
Q Consensus 296 ~~~~s~~~~--~~~w~~ 310 (335)
+++.+++.+ +.+|..
T Consensus 272 qLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCA 288 (370)
T ss_pred eEEEecCCCceeEEEec
Confidence 456666654 666755
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=132.41 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=139.8
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
+..+.+||.+... .+.+..|...+.+..|+|+|+.|+.++.+ ..|++||+.++.........+......|+|+|+.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4688999987655 45566788899999999999999988764 3699999988765443333344445789999998
Q ss_pred EEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCC-eeeeeecccccC
Q psy16316 163 FGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNG-QCLQTLAGFLNN 239 (335)
Q Consensus 163 ~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~-~~~~~~~~~~~~ 239 (335)
++.+. .++...||.+... ......+ ...........|+|||+.++..+ .++..++|++... ...+.+ .+.
T Consensus 262 La~~~~~~g~~~Iy~~d~~-~~~~~~l---t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-- 334 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGAN-GGTPSQL---TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-- 334 (429)
T ss_pred EEEEEecCCcEEEEEEECC-CCCeEee---ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--
Confidence 87764 5777766644321 1112222 12223346789999999887655 4567777775432 222222 221
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
. ....|+|||++|+..+.++ +.+||+.++...... ..+ ....++|+|+|.+++.++ +...+|..
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 1 2468999999999888765 666999887644322 222 235678999999998875 44555643
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-13 Score=114.90 Aligned_cols=290 Identities=15% Similarity=0.257 Sum_probs=183.7
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC---
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN--- 97 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--- 97 (335)
-.++.++|++.-.-+|++..|-+|++||-.. ++...+.. ..-.+.+++|-|.....+...+ -+.|.+|..+..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC--r~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC--RAGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee--cceeEEEEcCccccc
Confidence 3478899999777899999999999999766 33333332 3456899999887766444332 456888876422
Q ss_pred -ce----------EeeecCCCCCeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEE
Q psy16316 98 -KY----------IRYFPGHTKKVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 98 -~~----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 164 (335)
+. +...+|| ..|+++.|.+||..++++|. |..|.+||..++.++... ...+....+.|+||+.++.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 2233566 78999999999999999985 689999999999887765 3445567889999999999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC-CCee-----------e--
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY-NGQC-----------L-- 230 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~-~~~~-----------~-- 230 (335)
+++-|+..++|+.... ....+.... ...+....|+|.|+.|+.+..+.. ++|.+. .+++ +
T Consensus 255 aAt~davfrlw~e~q~----wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQS----WTKERWILG-SGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred Eecccceeeeehhccc----ceecceecc-CCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeee
Confidence 9999999999965431 111122211 224567889999999887765432 333321 0110 0
Q ss_pred -eee------cccccCCCCceEEEEcCCCcEEEEEeCCCc--------EEEEECCCCeeEE-----EeCCCCCCCeEEEE
Q psy16316 231 -QTL------AGFLNNKGCPLEASFTPDSKYVISGSTDGR--------IHIWNAEKGFKVC-----VLDADHPSPVQTIQ 290 (335)
Q Consensus 231 -~~~------~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~--------v~iwd~~~~~~~~-----~~~~~h~~~v~~v~ 290 (335)
..+ .+...-.+.+-+++|+|.|.+||+-=..+. |.+||....-... .....|+ .-+.
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P---~~Is 405 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP---AYIS 405 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC---ceEE
Confidence 000 010111234567999999999998655443 5667765432111 1223343 3457
Q ss_pred eCC---CCcEEEeee--ceeEEecccccccccCCCCccce
Q psy16316 291 FNP---KFNMMASAC--TNLAFWIPTYLSNHQEPDTIDNL 325 (335)
Q Consensus 291 ~sp---~~~~~~s~~--~~~~~w~~~~~~~~~~~~~~~~~ 325 (335)
|+| ++.+|..+= +.+..|- =....++.|.+-+++
T Consensus 406 F~pl~n~g~lLsiaWsTGriq~yp-l~f~~~~~p~~~~~~ 444 (445)
T KOG2139|consen 406 FGPLKNEGRLLSIAWSTGRIQRYP-LTFQCFRDPQLYHNI 444 (445)
T ss_pred eeecccCCcEEEEEeccCceEeee-eEEEeeccccccccC
Confidence 776 345555442 3344342 234455666555554
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-14 Score=130.10 Aligned_cols=282 Identities=15% Similarity=0.231 Sum_probs=183.1
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCe-eEEeecCCCCeEEEEEcC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA-AIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~ 95 (335)
+-|-...-..-.||+|++.++.... .+|+||.+.++.+...+..+.+.+..+.+.+.... ....+.+.||+|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3444444455679999998776654 59999999999999988889999988888776553 555677789999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCC---CCEEEE-eeCCCc------------EEEeecCCCCcee--EEEecCCcceEEEC
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPI---DDTFIS-GSYDKT------------VRLWDLRSPNCQG--IMHVSGSRPIAAFD 157 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s-~s~D~~------------i~vWd~~~~~~~~--~~~~~~~~~~~~~~ 157 (335)
.+..++++..+. ++.++.+.|. ....+. +..|.. ++-..+.+..... .........++...
T Consensus 91 ~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 999998887543 3333333221 111221 112221 1111111110000 00000012345566
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC-Ceeeeeeccc
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN-GQCLQTLAGF 236 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~ 236 (335)
+.|.+.+.. .+..+.+|+..... .-.........+...+++.++||.+++++++..+|.|.+|.-.. .....+....
T Consensus 170 ~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 170 NSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred CCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 667665555 44578888876522 11112222334444568899999999999999999999997543 1111111222
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+-|...|.+++|+++|.+|.+||.+|-+-+|.++++.+. .++ .-.++|..+.+||++.+.+....+
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP-RLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP-RLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc-ccCCeeEEEEEcCCCCeEEEEecC
Confidence 335566888999999999999999999999999988743 344 356899999999999886666543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-14 Score=113.61 Aligned_cols=280 Identities=14% Similarity=0.217 Sum_probs=183.5
Q ss_pred eeccCCccEEEEEEC--CCC-CEEEEecC----CCeEEEEEc--cCCccee-eeecccccceEEEEecCCCe---eEEee
Q psy16316 16 LFRENTDKITSIDYS--ADG-LLLISCSE----DDQIVIYDC--ELGTNKR-TVFSKKYGVDLIRFTHAKQA---AIHAS 82 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s--~~g-~~lasgs~----Dg~i~lwd~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~ 82 (335)
.|..+ -.++++.|+ |+. -+||.||- ...|.|-.+ ++++... .-+.|.++++.+-|.|+..+ .++++
T Consensus 40 ~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT 118 (364)
T KOG0290|consen 40 TYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT 118 (364)
T ss_pred EecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence 34444 347889998 333 47888874 355555433 3343322 22567888999999888642 34444
Q ss_pred cCCCCeEEEEEcCC--CceE--eee-----cCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCc--ee--EEEec
Q psy16316 83 TKIDDTVRYLSLHD--NKYI--RYF-----PGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNC--QG--IMHVS 148 (335)
Q Consensus 83 ~~~d~~i~~~~~~~--~~~~--~~~-----~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~--~~--~~~~~ 148 (335)
.+..+|+|.+.. .+.. ..+ ..|.+++++..|+.- -+++.++|-|-+..+||+.++.. .. .+-+.
T Consensus 119 --s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 119 --SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred --ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 367899998863 2211 112 246688999999874 57899999999999999998733 22 22233
Q ss_pred CCcceEEECCCC-CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEE-EeCCCeEEEEECC
Q psy16316 149 GSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILI-STNGSIIRTFDAY 225 (335)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-~~~~~~i~i~d~~ 225 (335)
..+.-++|..++ ..|++.+.||.+++||+|..+- ... +........+...++++++.. ++|+ +.+...|.+.|++
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STI-IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STI-IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceE-EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 334445666644 7899999999999999997531 111 111122234556678887664 4443 4566789999998
Q ss_pred CC-eeeeeecccccCCCCceEEEEcCC-CcEEEEEeCCCcEEEEECCCCeeEE----EeCCCCCCCeEEEEeCCC-CcEE
Q psy16316 226 NG-QCLQTLAGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKGFKVC----VLDADHPSPVQTIQFNPK-FNMM 298 (335)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~~~----~~~~~h~~~v~~v~~sp~-~~~~ 298 (335)
.. ..+.+++ +|.++|..++|.|. ..+|+|+|+|..+.|||+..--+.. .+...-.+.|+.++|+|. ...+
T Consensus 275 ~P~tpva~L~---~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 275 VPCTPVARLR---NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred CCCcceehhh---cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 63 2344444 46778889999995 5689999999999999986432200 111123568999999975 4567
Q ss_pred Eeeec
Q psy16316 299 ASACT 303 (335)
Q Consensus 299 ~s~~~ 303 (335)
+.+.+
T Consensus 352 ai~~~ 356 (364)
T KOG0290|consen 352 AICFG 356 (364)
T ss_pred EEEec
Confidence 76654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=133.57 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=144.5
Q ss_pred CccEEEEEECC-CCCEEEEecCCCeEEEEEccCCc-------ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 21 TDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGT-------NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 21 ~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
...|+.+.|+| |...||.+++||.|+||-+..+. ....+..|...+..++|.+-. ..++++++.|-+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-hhHhhhhhccceeeee
Confidence 34588999998 66899999999999999987653 234456678889999998753 3466778889999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC----CcceEEECCCCCEEEEEEc
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG----SRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 168 (335)
|+.+.+.-..+.||++.|.+++|+|+|+.++|.+.||+|+++..++.... +....+ ....+.|.-+|.++++.+-
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccCCCCccCcceeEEEEecCcEEEEecc
Confidence 99999888889999999999999999999999999999999998865432 111111 1123455567777766543
Q ss_pred C----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE-EEEEeCCCeEEEEECCC
Q psy16316 169 S----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY-ILISTNGSIIRTFDAYN 226 (335)
Q Consensus 169 d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~i~i~d~~~ 226 (335)
| +.|.+||.......++...........-+ --+++|.+. +++|-.|..|++|.+-.
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv--P~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLV--PHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeecccCcccc--ccccCCCceEEEecCCCceEEEEEecC
Confidence 3 57888888766544443332211111111 124556555 45666778899998654
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-14 Score=133.74 Aligned_cols=263 Identities=15% Similarity=0.188 Sum_probs=167.0
Q ss_pred cceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++..+.+|...|..++.++.. .+|+|||.||+||+||+..-... . ..
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~-~s------------------------ 1087 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------G-GS------------------------ 1087 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC------c-ce------------------------
Confidence 3456688999999998888655 99999999999999998532211 0 00
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-------EEEe--cCC-cceEEECC-C
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-------IMHV--SGS-RPIAAFDP-E 159 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-------~~~~--~~~-~~~~~~~~-~ 159 (335)
.+...++.--...+.++...+.++.++.++.||.|++.++....... .... .+. +.+.++.. .
T Consensus 1088 ------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~ 1161 (1431)
T KOG1240|consen 1088 ------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV 1161 (1431)
T ss_pred ------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc
Confidence 01111222234677888888999999999999999999987521110 0011 111 11112221 2
Q ss_pred CC-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 160 GL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 160 ~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
+. .++.+..-+.+..||++........ +. ......+++++.+|.++++++|+..|.+-+||++=+..+.... ..
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~l--k~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~--~P 1236 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRL--KN-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE--HP 1236 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHhh--hc-CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc--Cc
Confidence 33 6677778889999999874432111 11 2233457899999999999999999999999998665554443 23
Q ss_pred CCCCceEEEEcCCC---cEEEEEe--CCCcEEEEECCCCeeEEEeCCC------------------CCCCeEEEEeCCCC
Q psy16316 239 NKGCPLEASFTPDS---KYVISGS--TDGRIHIWNAEKGFKVCVLDAD------------------HPSPVQTIQFNPKF 295 (335)
Q Consensus 239 ~~~~v~~~~~sp~~---~~l~tgs--~dg~v~iwd~~~~~~~~~~~~~------------------h~~~v~~v~~sp~~ 295 (335)
+...+..+..+|-. ...++++ ..+.|.+|++.+|.+...+... ++-......+.-.+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 34556667666643 3444444 4778999999998665544322 11122233444445
Q ss_pred cEEEeeece--eEEecccccccc
Q psy16316 296 NMMASACTN--LAFWIPTYLSNH 316 (335)
Q Consensus 296 ~~~~s~~~~--~~~w~~~~~~~~ 316 (335)
.++.+|+.+ |+.|.++..+..
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceeeecCCccceeeccCCCcccc
Confidence 666676654 788977655554
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=118.49 Aligned_cols=234 Identities=20% Similarity=0.239 Sum_probs=152.6
Q ss_pred eeec-cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-eeeec-----ccccceEEEEecCCCeeEEeecCCCC
Q psy16316 15 KLFR-ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-RTVFS-----KKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 15 ~~~~-~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
..+. .|-+.|.||.|.|++..+|+.. |..|.+|+++.+..+ ..+.. +......-+|+|..+...+++. .|+
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~ 193 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDS 193 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCC
Confidence 3343 6778999999999999999886 889999999877652 22221 2334566778887666666555 489
Q ss_pred eEEEEEcCCCceEeee-cCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEecCC--cceEEECCC-CCE
Q psy16316 88 TVRYLSLHDNKYIRYF-PGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVSGS--RPIAAFDPE-GLI 162 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~-~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~--~~~~~~~~~-~~~ 162 (335)
+++.||+++.+....+ .+|...|..+.|+|..+ .|+||+.||.||+||.+..+........+. +-.+.|+|. ..+
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 9999999987766555 47888999999999864 789999999999999986553322111111 224556664 578
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+.+|+.|..|.+|-..+..+.+.. .|..|..-.- ..+..-+.=-+..| .+.++ ..|...
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi---------------~~~~dese~e--~~dseer~kpL~dg-~l~ty---dehEDS 332 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQI---------------EFEDDESESE--DEDSEERVKPLQDG-QLETY---DEHEDS 332 (370)
T ss_pred EEecCCCceeEEEecccccccccc---------------ccccccccCc--chhhHHhccccccc-ccccc---cccccc
Confidence 889999999999987653322111 1111100000 00000000001111 12222 235567
Q ss_pred ceEEEEcC-CCcEEEEEeCCCcEEEEECCC
Q psy16316 243 PLEASFTP-DSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 243 v~~~~~sp-~~~~l~tgs~dg~v~iwd~~~ 271 (335)
|.+++||. |.-.+|+-|.||++.|=++..
T Consensus 333 VY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 88999987 566799999999998877654
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-14 Score=115.01 Aligned_cols=242 Identities=14% Similarity=0.205 Sum_probs=175.0
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..|+--.++|+|-+|++|++.+|.+-....+.||.......
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------- 44 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------- 44 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------
Confidence 45556678899999999999999999888888887543211
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-Cc---eeEEEecCCcceEEECCCCCEEEEEEcCC
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-NC---QGIMHVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
-+...+++.|...|+.++|.|..+.|+||+.|..-.+|....+ .- ...+..+....++.|+|.++.|++|+..+
T Consensus 45 --w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar 122 (361)
T KOG1523|consen 45 --WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR 122 (361)
T ss_pred --ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence 1234557789999999999999999999999999999998433 22 23346677778899999999999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--------------eeee-cc
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC--------------LQTL-AG 235 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--------------~~~~-~~ 235 (335)
.|.+|-+...+.--..+ .........+.+++|+|++-.|++|+.|+..|+|..+=... +..+ ..
T Consensus 123 ~isVcy~E~ENdWWVsK-hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSK-HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred EEEEEEEecccceehhh-hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 99999876532211110 01122345678999999999999999999999998531100 0000 11
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe-eEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF-KVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
.....+.+..+.|+|+|..|+=.+.|..+.+=|..... +...+...+ -|..++.|-.....++
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISENSVVA 265 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeecCCceee
Confidence 11344677889999999999999999999999987664 344444434 5777777754433333
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-13 Score=121.61 Aligned_cols=237 Identities=15% Similarity=0.178 Sum_probs=154.0
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec-CCCCeEEEEEcCCCceEe--eecCCCCCeEEEEECCCC
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHDNKYIR--YFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~--~~~~H~~~V~~~~~~~~~ 119 (335)
..|.+||.+.. ..+.+......+...+|+|++....+.+. ..+..+.++++.+++... .+++| +.+..|+|+|
T Consensus 179 ~~l~~~d~dg~-~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCC-CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCC
Confidence 47888988744 33445555566788999999876655442 234578899998875433 33443 4468999999
Q ss_pred CEEEEe-eCCC--cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC-CeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 120 DTFISG-SYDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS-DTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 120 ~~l~s~-s~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
+.|+.. +.++ .|.+||+.++................|+|+|+.++..+.+ +...+|.+... .+....+... .
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~~~lt~~---~ 330 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAPQRITWE---G 330 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCeEEeecC---C
Confidence 877654 4454 5889999887655443333334557899999988766653 45556644321 1122222211 1
Q ss_pred ccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc---EEEEEC
Q psy16316 196 CDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR---IHIWNA 269 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~---v~iwd~ 269 (335)
.......|+|||++++....+ ..|.+||+.+++. +.+.... ......|+|||++|+..+.++. ++++++
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~----~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF----LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC----CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 122457899999999876543 3588999988764 3343211 1234789999999999998765 677777
Q ss_pred CCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 270 EKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 270 ~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
++.....+. .|.+.+...+|+|-
T Consensus 406 -~G~~~~~l~-~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 406 -DGRFKARLP-ATDGQVKFPAWSPY 428 (429)
T ss_pred -CCCCeEECc-cCCCCcCCcccCCC
Confidence 454445554 47888999999984
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-13 Score=110.05 Aligned_cols=240 Identities=14% Similarity=0.268 Sum_probs=160.2
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-----CCCeEEEEEcCCC
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-----IDDTVRYLSLHDN 97 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~ 97 (335)
....++|+.|..=++.|.++ -.|||+++.-+....-.....+...+..-.-.+...+..|+ .-+.+-+||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 34459999999888877665 57999987533221111112222222222222222222232 2467899997777
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC-CCCceeEEEe-cCCcceEEECCCC--CEEEE-EEcCCeE
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR-SPNCQGIMHV-SGSRPIAAFDPEG--LIFGV-GVNSDTI 172 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~-~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~d~~v 172 (335)
+++..+. -..+|.++.+.++ .++.. ..+.|.+|... ..+.+..+.. .....+.++.|.. .++|. |-.-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7777765 5789999999875 45555 46789999987 3444443322 2233344455432 23333 3456899
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe-EEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI-IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
.|-|+......+. .....|...+.+++++.+|..+|+++..|+ |||||..+|..+.+++.-.. ...+.+++|||+
T Consensus 162 Qi~dL~~~~~~~p---~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 162 QIVDLASTKPNAP---SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-RADIYCIAFSPN 237 (346)
T ss_pred EEEEhhhcCcCCc---eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-hheEEEEEeCCC
Confidence 9999986443211 223345667899999999999999998876 99999999999988875433 346889999999
Q ss_pred CcEEEEEeCCCcEEEEECCC
Q psy16316 252 SKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~ 271 (335)
..+||+.|+.|+|+||.+..
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999998754
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-14 Score=133.65 Aligned_cols=247 Identities=19% Similarity=0.238 Sum_probs=158.9
Q ss_pred ccEEEEEECC--CCCEEEEecCCCeEEEEEcc-CC----cceeeeeccc-------ccceEEEEecCCCeeEEeecCCCC
Q psy16316 22 DKITSIDYSA--DGLLLISCSEDDQIVIYDCE-LG----TNKRTVFSKK-------YGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 22 ~~V~~v~~s~--~g~~lasgs~Dg~i~lwd~~-~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
..|+.+.+-. |-.+|++|+.||.||||+-- .. +....+.+-. ..-..+.|-. ....+..++.-.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVR 1187 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCee
Confidence 3477777654 45689999999999999642 21 1111111111 1112223322 222333444578
Q ss_pred eEEEEEcCCCceEeeecCC-CCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCc---eeEE-EecCC--cceEEECCC
Q psy16316 88 TVRYLSLHDNKYIRYFPGH-TKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNC---QGIM-HVSGS--RPIAAFDPE 159 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H-~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~---~~~~-~~~~~--~~~~~~~~~ 159 (335)
.||+||.+....++.++.. ..-|+++.-.- .|+.++.|-.||.||++|.+.... +... .+... +--+.+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 9999999998888777643 34577775543 479999999999999999985432 1122 12222 222356665
Q ss_pred CC-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee---cc
Q psy16316 160 GL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL---AG 235 (335)
Q Consensus 160 ~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---~~ 235 (335)
|. .+++|+.+|.|++||+|.............-+.....+++..+++...+|+|+. ..|+||++...+ +..+ .+
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPG 1345 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcc
Confidence 53 589999999999999997322111111111111223678999999999999987 899999986432 2222 22
Q ss_pred ccc-CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 236 FLN-NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 236 ~~~-~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
+.+ .++.+.+++|||---++|+|+.|.+|.||...++
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 222 3456788999999999999999999999987654
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-14 Score=123.39 Aligned_cols=242 Identities=20% Similarity=0.351 Sum_probs=168.2
Q ss_pred cCCccEEEEEECCCCCE-EEEecCCCeEEEEEccCCcce----------------------------eeeeccc-cc---
Q psy16316 19 ENTDKITSIDYSADGLL-LISCSEDDQIVIYDCELGTNK----------------------------RTVFSKK-YG--- 65 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~-lasgs~Dg~i~lwd~~~~~~~----------------------------~~~~~~~-~~--- 65 (335)
+|...-+.+..+|||+| +|||-.--.|++||+..-... +.+.-|. ++
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 56777789999999996 667778899999998653211 1111110 00
Q ss_pred -ceE------EEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC
Q psy16316 66 -VDL------IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 66 -~~~------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 138 (335)
... +++... ...++ .++....|.-+|++.|+.+.-|+--.+.+++|..++-..+|++|+.||.|.+||.+.
T Consensus 129 ~~RIP~~GRDm~y~~~-scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKP-SCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcCCccccccCC-CccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 000 111111 11122 223345677789999999998888889999999999999999999999999999998
Q ss_pred CCceeEEEec-------C-----CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC
Q psy16316 139 PNCQGIMHVS-------G-----SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD 206 (335)
Q Consensus 139 ~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 206 (335)
......+... + .++.+.|+.+|..+++|+.+|.+.|||+|+. .|... -.+....++..+.|.+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--~pl~~--kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--KPLLV--KDHGYELPIKKLDWQDT 282 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--Cceee--cccCCccceeeeccccc
Confidence 7655443221 1 2456789999999999999999999999973 23321 12233445667777655
Q ss_pred C-CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 207 G-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 207 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+ .--+++.+...++|||-.+|+....+.. ...+..+++-|++.++.++-++..+..|=+.
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 2 2344555778899999999987766542 2335678999999999999999888777543
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=124.56 Aligned_cols=246 Identities=14% Similarity=0.161 Sum_probs=159.6
Q ss_pred CccEEEEEECCC-CCEEEEecCCCeEEEEEccCCcc--eee----eecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 21 TDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTN--KRT----VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 21 ~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...|+|+.|+|. ..++|.|..+|.|-+||+..+.. ... ...|...+..+.|.......-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 456999999985 57899999999999999987765 221 23355667777786654444455666799999998
Q ss_pred cCCCce-Ee-----eec------CCCCCeEEEEECCCC-CEEEEeeCCCcEEE---eecCCCC-c----e-eEEEecCCc
Q psy16316 94 LHDNKY-IR-----YFP------GHTKKVNSLCLSPID-DTFISGSYDKTVRL---WDLRSPN-C----Q-GIMHVSGSR 151 (335)
Q Consensus 94 ~~~~~~-~~-----~~~------~H~~~V~~~~~~~~~-~~l~s~s~D~~i~v---Wd~~~~~-~----~-~~~~~~~~~ 151 (335)
++.-.. .. ... .-...++++.|.+.. +.++-|+.+|.|.- ++.+... . + ....+.+.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 754322 11 111 112468899999854 67889999999876 3333222 0 0 111234445
Q ss_pred ceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee
Q psy16316 152 PIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~ 229 (335)
..+.++|-+. +|.+++ |-+++||..... ..|...+ ......+.+++|||-.. .++++..+|.+.+||+.....
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~-~~Pl~~~---~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-ASPLLSL---DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCC-CCcchhh---hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 5667777654 444444 899999987521 2233222 22233478899999875 455666799999999875432
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
........ .......+.|+++|+.|+.|...|++++|++...
T Consensus 477 ~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 477 EPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 22211111 1222345678888999999999999999998643
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=111.01 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=154.5
Q ss_pred ccCCccEEEEEECCCC-----CEEEEecCCCeEEEEEccCCcc---eee-eec-----ccccceEEEEecCCCeeEEeec
Q psy16316 18 RENTDKITSIDYSADG-----LLLISCSEDDQIVIYDCELGTN---KRT-VFS-----KKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g-----~~lasgs~Dg~i~lwd~~~~~~---~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
..|.-+++.+-|.|+. .+|||+| ..+|||.+...+. ... +.. ...+++...|... +..++.++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtS 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTS 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEee
Confidence 3688899999999986 3677665 5899998864221 111 111 1233444455432 34567778
Q ss_pred CCCCeEEEEEcCCCce---EeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEe-cC-CcceE--E
Q psy16316 84 KIDDTVRYLSLHDNKY---IRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHV-SG-SRPIA--A 155 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~---~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~-~~~~~--~ 155 (335)
+.|-+..+||++++.. ...+-+|...|..++|...+ +.++|+|.||+||+||++...-...+-. .. ..+.+ +
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 8999999999998633 44577999999999999865 6899999999999999997543322211 11 22333 3
Q ss_pred ECC-CCCEEEE-EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCeee--
Q psy16316 156 FDP-EGLIFGV-GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQCL-- 230 (335)
Q Consensus 156 ~~~-~~~~~~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~~-- 230 (335)
+++ +.+++|+ +.+...|.|.|+|... ........+...+++++|.|... .+.++++|..+-+||+......
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~----tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPC----TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCC----cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 333 4566665 4455789999998642 33334456778899999999764 6677888889999998754320
Q ss_pred eeecccccCCCCceEEEEcC-CCcEEEEEeC
Q psy16316 231 QTLAGFLNNKGCPLEASFTP-DSKYVISGST 260 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp-~~~~l~tgs~ 260 (335)
..-.-.....+.|..+.|+| .+..++.+..
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 00000011234566788886 4567777654
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-12 Score=103.30 Aligned_cols=266 Identities=9% Similarity=0.090 Sum_probs=167.1
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCC---------c-ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELG---------T-NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..|++-+++|.+++|+.|+.+|+|-+..+... + .+-....|..+++.++|..+ ++.++ .||.|+=
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~-gdG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSG-GDGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeec-cCceEEE
Confidence 34677789999999999999999999987532 1 12233567788888888732 33344 3689987
Q ss_pred EEcCCCce-------Ee-eecCCC-----CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEEC
Q psy16316 92 LSLHDNKY-------IR-YFPGHT-----KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFD 157 (335)
Q Consensus 92 ~~~~~~~~-------~~-~~~~H~-----~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~ 157 (335)
|.-.+... .+ ..+-|. -.|+++...|+.+-++.++.|+.+..||+.+++...++.. .+-+.++...
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 75432211 11 112233 4689999999888888888999999999999988776632 2223334443
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec----cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA----AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
.....+.+|+.||++++||+++.+.......... ..+...| -.+..-+..++++| .+..+.+|++++.++...+
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w-igala~~edWlvCG-gGp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW-IGALAVNEDWLVCG-GGPKLSLWHLRSSESTCVF 243 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce-eEEEeccCceEEec-CCCceeEEeccCCCceEEE
Confidence 3444567899999999999987432111111100 0001111 14455566777766 5778999999998877665
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC-cEEEeee
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-NMMASAC 302 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~~s~~ 302 (335)
.- ...+..+.|.- +.++.+++...|.-|.+. |..-...+..|+ .+....|+..- +++..++
T Consensus 244 pi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 244 PI----PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST-ACYSASWQTSPIKFISIAG 305 (325)
T ss_pred ec----ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc-ceeeecccCCceEEEEecc
Confidence 31 12233456643 468888888889999874 444444444443 45566665433 3444343
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=122.47 Aligned_cols=187 Identities=20% Similarity=0.355 Sum_probs=125.5
Q ss_pred CCCeEEEEEcCCCceEeeec--C--CCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFP--G--HTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE 159 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~--~--H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
.-+.+.+.|....+..+.+. . -+..|+|+.|-|-+ ..++.+-.+|.+.++|..... ....+.....++
T Consensus 193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GATAPSYQALKD 265 (636)
T ss_pred ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cCCCCcccccCC
Confidence 34566666665433332221 1 24789999999854 566777789999999873210 111122223345
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
+..|+...... .. ...|....... ...++..+|+|||++||+-+.|+.+||||..+.+.+..++. .
T Consensus 266 ~~~f~i~t~ks-------k~-~rNPv~~w~~~---~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---Y 331 (636)
T KOG2394|consen 266 GDQFAILTSKS-------KK-TRNPVARWHIG---EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---Y 331 (636)
T ss_pred CCeeEEeeeec-------cc-cCCccceeEec---cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---h
Confidence 55554432211 00 01223222222 22567899999999999999999999999988766554433 2
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
-+-.++++|||||+||++|++|.-|.||.+.+.+.+..- .+|..+|+.|+|.|
T Consensus 332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-QGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-cccccceeeEeecc
Confidence 334688999999999999999999999999887766654 67999999999996
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-12 Score=107.72 Aligned_cols=191 Identities=14% Similarity=0.255 Sum_probs=132.3
Q ss_pred eEEEEECCCCCEEEEeeCC--CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceee
Q psy16316 110 VNSLCLSPIDDTFISGSYD--KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187 (335)
Q Consensus 110 V~~~~~~~~~~~l~s~s~D--~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~ 187 (335)
|.-+-|+. .+++-.+.+ +.+++.+++....+..+.....+-.+.+ ..+.++++-.+ .|.|||++.+. .+..
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm--Nr~RLvV~Lee-~IyIydI~~Mk--lLhT 121 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRM--NRKRLVVCLEE-SIYIYDIKDMK--LLHT 121 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEE--ccceEEEEEcc-cEEEEecccce--eehh
Confidence 44445554 355444444 4588888877655444433333333333 44556666554 49999998754 2233
Q ss_pred EEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-E
Q psy16316 188 FKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-I 264 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-v 264 (335)
+.........+.++++++.+.+++.-+ ..|.|.+||+.+.+.+..+.. |.+.+.+++|+|+|.+|||+|+.|+ |
T Consensus 122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a---H~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA---HKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe---cCCceeEEEECCCCCEEEEeccCceEE
Confidence 332223334456667777777998643 457899999999988888775 5566788999999999999999998 7
Q ss_pred EEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 265 HIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 265 ~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
|++.+.+|.+...+. ...+..|.+++|||++.+|++.+ .+|+++-+
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 999999998876653 22356799999999999999886 46888755
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-12 Score=117.61 Aligned_cols=237 Identities=16% Similarity=0.143 Sum_probs=152.4
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec-CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~ 120 (335)
..+|.+||.+ +.+.+.+..+...+...+|++++...++.+. .....+.+||+.+++... +..+.+...+..|+|+|+
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR 260 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC
Confidence 3579999985 4445556666667888899998876555442 224578999998876533 333344455789999998
Q ss_pred EEE-EeeCCC--cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc-CCe--EEEEEccCCCCCceeeEEeccCC
Q psy16316 121 TFI-SGSYDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SDT--IKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 121 ~l~-s~s~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
.|+ +.+.++ .|.+||+.++................|+|+|+.++..+. ++. +.++|+... ....+....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt~~g-- 335 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLTFQG-- 335 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEeecCC--
Confidence 664 556665 599999988765443333333345689999998877664 444 555555432 122222111
Q ss_pred CccceEEEEccCCCEEEEEeCCC---eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC---CcEEEEE
Q psy16316 195 ECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD---GRIHIWN 268 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd 268 (335)
......+|+|+|++++..+.++ .|.+||+.+++.. .+... .......|+|||++|+..+.+ +.|++++
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG----SLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC----CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 1123579999999998765432 5999999877643 33321 122346899999988777653 3578888
Q ss_pred CCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 269 AEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 269 ~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
.. +.....+. .+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLV-SADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcc-cCCCCCCCCccCC
Confidence 75 43444443 3567788889988
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=111.16 Aligned_cols=248 Identities=16% Similarity=0.143 Sum_probs=150.3
Q ss_pred eec-cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCe------eEEeecCCCCe
Q psy16316 16 LFR-ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA------AIHASTKIDDT 88 (335)
Q Consensus 16 ~~~-~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~ 88 (335)
.++ .|+..|+.+.--|++ .|.+=+.|+.+.+|++.-+..+..-....+.+..++|+-..+. ...-+-+.|.
T Consensus 50 ~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde- 127 (323)
T KOG0322|consen 50 LIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE- 127 (323)
T ss_pred hhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-
Confidence 456 578889999888884 5788899999999999765332211111112222333211111 0111111111
Q ss_pred EEEEEcCCCceEeee----cCCCCCeEEEEECC-CC--CEEEEeeCCCcEEEeecCCCCcee-----------EEEecCC
Q psy16316 89 VRYLSLHDNKYIRYF----PGHTKKVNSLCLSP-ID--DTFISGSYDKTVRLWDLRSPNCQG-----------IMHVSGS 150 (335)
Q Consensus 89 i~~~~~~~~~~~~~~----~~H~~~V~~~~~~~-~~--~~l~s~s~D~~i~vWd~~~~~~~~-----------~~~~~~~ 150 (335)
..+-|-.....++.. .+..+.+.|..+.- .+ -+|+.|-++|.+.+||+.++..+- ...+...
T Consensus 128 ~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp 207 (323)
T KOG0322|consen 128 THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP 207 (323)
T ss_pred hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence 111111111111111 13456777777533 23 257778899999999999863211 1112222
Q ss_pred cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
+..+.+.+....=++|+.+..+..|.+..- .+.........-.+..+.++.+-||++.+|+++-|+.||+|+-+++..+
T Consensus 208 vlsldyas~~~rGisgga~dkl~~~Sl~~s-~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322|consen 208 VLSLDYASSCDRGISGGADDKLVMYSLNHS-TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred ceeeeechhhcCCcCCCccccceeeeeccc-cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch
Confidence 223344443333356667777888887642 1111111222223445678999999999999999999999999999888
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
..++-| ...+.+++|+|+...+|.+|.|++|.+|++
T Consensus 287 AVLkyH---sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYH---SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhh---hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 777654 456788999999999999999999999985
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-12 Score=114.63 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=154.1
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec-CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~ 120 (335)
...|.+||.+ +...+.+..+...+...+|++++....+.+. ..+..+.+||+.+++.. .+..+.+.+.+.+|+|+|+
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 3478888875 4445556666777889999999876555442 23578999999887653 3445666778899999998
Q ss_pred EE-EEeeCCCc--EEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCC
Q psy16316 121 TF-ISGSYDKT--VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 121 ~l-~s~s~D~~--i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
.| ++.+.++. |.+||+.++.........+......|+|+|..++..+. ++ .|.++|+... ....+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~---~~~~lt~~--- 332 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS---NPRRISFG--- 332 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC---CeEEeecC---
Confidence 76 46666665 67778887765444333333345689999998877664 33 5777776542 12222211
Q ss_pred CccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC------CcEE
Q psy16316 195 ECDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD------GRIH 265 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d------g~v~ 265 (335)
...+....|+|+|+.++....+ ..|.+||+..+. .+.+... ..+....|+|||++|+..+.+ ..++
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSG----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCC----CCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 2233457899999999876543 358888976543 3333221 124467999999988765543 2578
Q ss_pred EEECCCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 266 iwd~~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
+.|+..+.. ..+. .++.+...+|+|-
T Consensus 408 ~~dl~g~~~-~~l~--~~~~~~~p~Wsp~ 433 (435)
T PRK05137 408 TVDLTGRNE-REVP--TPGDASDPAWSPL 433 (435)
T ss_pred EEECCCCce-EEcc--CCCCccCcccCCC
Confidence 888765543 3343 2455777888874
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-12 Score=114.84 Aligned_cols=239 Identities=17% Similarity=0.206 Sum_probs=149.2
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCE
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~ 121 (335)
..|.+||.+ +...+.+..+...+...+|+|++....+.+.. ....+.+||+.+++.... ....+.+.+..|+|+|+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 467777763 44445555566678888999988765554432 234689999988865433 223345668899999987
Q ss_pred EE-EeeCCCcEEEeec--CCCCceeEEEecCCcceEEECCCCCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccCCCcc
Q psy16316 122 FI-SGSYDKTVRLWDL--RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAEKECD 197 (335)
Q Consensus 122 l~-s~s~D~~i~vWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (335)
|+ +.+.|+...+|.+ ..+.........+......|+|+|+.++..++ ++...+|.+.... .......... ..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-g~~~~lt~~g---~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-GAAQRVTFTG---SY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-CceEEEecCC---CC
Confidence 75 6778888777765 34333222222222334679999998776554 4667777664321 1122222111 11
Q ss_pred ceEEEEccCCCEEEEEeCCC---eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-c--EEEEECCC
Q psy16316 198 WTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-R--IHIWNAEK 271 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-~--v~iwd~~~ 271 (335)
....+|+|+|++++..+..+ .|.+||+.+++.. .+... .......|+|||++|+..+.++ . +++.+. +
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 23468999999998766543 5999999887643 33321 1124579999999988877654 2 555555 3
Q ss_pred CeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 272 GFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 272 ~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
+.....+. .+.+.+...+|+|-
T Consensus 404 g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEee-cCCCCCCCCccCCC
Confidence 54444443 35677888899984
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-12 Score=116.41 Aligned_cols=214 Identities=16% Similarity=0.194 Sum_probs=135.6
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
..+.++|.. +...+.+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...+....+......|+|+|+.+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 456666664 33344455677889999999999998887753 35999999988765544344445567899999877
Q ss_pred EE-EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEE--ECCCCeeeeeecccccC
Q psy16316 164 GV-GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTF--DAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 164 ~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~--d~~~~~~~~~~~~~~~~ 239 (335)
+. ...++...||.++... .....+ ...........|+|||+.++..++ ++...+| ++.+++. +.+...
T Consensus 255 a~~~~~~g~~~Iy~~d~~~-~~~~~l---t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~--- 326 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADG-SGLRRL---TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT--- 326 (427)
T ss_pred EEEEccCCCceEEEEECCC-CCcEEC---CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC---
Confidence 64 5667777777664321 112211 111222345789999999886654 3444555 5455443 222211
Q ss_pred CCCceEEEEcCCCcEEEEEeCCC---cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEecccc
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTY 312 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~ 312 (335)
.......+|||||++|+..+.++ .|++||+.++.... +.. .......+|+|+|.+++.+. +...++..+.
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 11223578999999998777654 59999998775443 322 22346789999999888764 2334554443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-12 Score=116.06 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=142.4
Q ss_pred eeeccCCccEEEEEECCCCCEEEEec---CCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-CCCeEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCS---EDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-IDDTVR 90 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs---~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~ 90 (335)
+.+..+.+.+....|||||+.||..+ .+..+.+||+.+++... +..........+|+|++...++.... .+..+.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 34555677899999999999888654 34679999998775432 22223334568899988766554332 233688
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-CcEEEe--ecCCCCceeEEEecCCcceEEECCCCCEEEEEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD-KTVRLW--DLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-~~i~vW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
+||+.+++..+... +...+....|+|+|+.|+..+.+ +..++| |+.++....+...........++|+|+.++...
T Consensus 271 ~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 271 VMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 89998887655444 44567889999999988777654 444555 666554433322222334567999999887765
Q ss_pred cC---CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe---EEEEECCCCeeeeeecccccCCC
Q psy16316 168 NS---DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 168 ~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
.+ ..+.+||+.+.. ...+.. . .......|+|||+.++.++.++. +.++++. ++..+.+.++ .+
T Consensus 350 ~~~g~~~I~~~dl~~g~---~~~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~---~~ 418 (429)
T PRK03629 350 SNGGQQHIAKQDLATGG---VQVLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT---DG 418 (429)
T ss_pred ccCCCceEEEEECCCCC---eEEeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC---CC
Confidence 43 357788886532 222211 1 11134689999999998886643 6777774 4445555543 23
Q ss_pred CceEEEEcC
Q psy16316 242 CPLEASFTP 250 (335)
Q Consensus 242 ~v~~~~~sp 250 (335)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 345577877
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-12 Score=103.72 Aligned_cols=276 Identities=15% Similarity=0.192 Sum_probs=185.8
Q ss_pred CccEEEEEECCCCCE-EEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 21 TDKITSIDYSADGLL-LISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~-lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
-+.|.-+.|..|..+ |..+..|+.|.+|++...+-...+.....++...+|+|++...+ ..+..+-.|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL-~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHIL-LTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEe-eeecceeEEEEEEecccee
Confidence 355778899988875 55667899999999988877777777888999999999876544 4556789999999988765
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeC-C-----------------------------------CcEEEeecCCCCcee
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSY-D-----------------------------------KTVRLWDLRSPNCQG 143 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D-----------------------------------~~i~vWd~~~~~~~~ 143 (335)
.. ++--+..+..++|+|+|++.+-++. | +.+.+||---...+.
T Consensus 127 ~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 127 YL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred EE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 43 2222456688999999987665543 1 122233321111111
Q ss_pred EEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCC------------------------------------------C
Q psy16316 144 IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF------------------------------------------D 181 (335)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~------------------------------------------~ 181 (335)
.++.+-....+.++|.++++++|+.|+.+++.+--+. +
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 1222223445789999999999999998887552110 0
Q ss_pred CC--------------cee--eEEe---ccCCCccceEEEEccCCCEEEEEeCC--CeEEEEECCCCeeeeeecccccCC
Q psy16316 182 KG--------------PFS--NFKF---AAEKECDWTGIKFSADGKYILISTNG--SIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 182 ~~--------------~~~--~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
.. +.. ..+. ..+..+.+.-++|++|..++++-.+. ..+.+||+.+.+....+. ..
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk 361 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QK 361 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hc
Confidence 00 000 0000 01112333458999999998876544 569999998876554443 34
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
..|....|+|....|+.+....++++|..+-.+.++ .+. ..-.|..+.|+.+|..++-.+.+
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~-~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPK-KGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCC-CCceeeeEEecCCCcEEEEEcCC
Confidence 567889999998888888888889999876433333 332 33579999999999998888765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-12 Score=114.63 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=139.2
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC---CCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY---DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
..+.++|.+... .+.+..|...+.+..|+|+|+.|+..+. +..|.+||+.++....+....+......|+|+|+.+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 367777875443 4556678889999999999998888764 468999999887765444444444556899999876
Q ss_pred E-EEEcCCe--EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccc
Q psy16316 164 G-VGVNSDT--IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 164 ~-~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+ +...++. |.+||+.... ...+ ...........|+|||+.++..+.. ..|+++|+..++. +.+...
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~---~~~L---t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~- 332 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGT---TTRL---TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG- 332 (435)
T ss_pred EEEEecCCCceEEEEECCCCc---eEEc---cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC-
Confidence 5 4445554 6666775422 2221 1122223457899999998877642 3588889876654 333321
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCC---CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec---e---eEEe
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTD---GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT---N---LAFW 308 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~---~---~~~w 308 (335)
........|+|||+.|+..+.+ ..|.+||...+.. ..+.. ...+...+|+|+|++++.... . ..+|
T Consensus 333 --~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 333 --GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred --CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 1223457899999999887653 3588888755433 33322 234678899999998776532 1 3567
Q ss_pred cccccc
Q psy16316 309 IPTYLS 314 (335)
Q Consensus 309 ~~~~~~ 314 (335)
..+...
T Consensus 408 ~~dl~g 413 (435)
T PRK05137 408 TVDLTG 413 (435)
T ss_pred EEECCC
Confidence 655433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-12 Score=115.79 Aligned_cols=212 Identities=18% Similarity=0.175 Sum_probs=138.1
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
..+.+||..... .+.+..|...+.+..|+|+++.|+..+.+ ..|.+||+.+++...+....+......|+|+|+.+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 357888876443 44455677889999999999999888744 46999999887765443334444456899999876
Q ss_pred EE-EEcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CC--eEEEEECCCCeeeeeecccc
Q psy16316 164 GV-GVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GS--IIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 164 ~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~~ 237 (335)
+. .+.++ .|.+||+.+.. ...+. .........+|+|||+.++..++ ++ .|+++++.+++.. .+...
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~---~~~lt---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~- 334 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQ---LTRLT---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ- 334 (433)
T ss_pred EEEEeCCCCceEEEEECCCCC---eEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC-
Confidence 54 44444 58888886532 22111 11112245789999999887764 33 4777777776533 33211
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCC---cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccc
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPT 311 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~ 311 (335)
.......+|+|||++|+..+.++ .|++||..++... .+. +.......+|+|+|.+++... +...+|..+
T Consensus 335 --g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 335 --GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred --CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 12233589999999988765443 5999999776544 332 223455779999999877654 234555544
Q ss_pred c
Q psy16316 312 Y 312 (335)
Q Consensus 312 ~ 312 (335)
.
T Consensus 410 ~ 410 (433)
T PRK04922 410 T 410 (433)
T ss_pred C
Confidence 4
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-12 Score=107.35 Aligned_cols=259 Identities=17% Similarity=0.227 Sum_probs=167.6
Q ss_pred CCccEEEEEECCCC--CEEEEecCCCeEEEEEccCCcceeee------ecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 20 NTDKITSIDYSADG--LLLISCSEDDQIVIYDCELGTNKRTV------FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 20 h~~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
...+|+.+.|.-++ ..|.-++.|..+.....+-..+.... ......+..+ .......+. +-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl--~~~dg~Lit--c~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGL--KLADGTLIT--CVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccch--hhcCCEEEE--EecCCcEEE
Confidence 34567777777655 35666667777777766544433221 1111111111 111222222 345788999
Q ss_pred EEcCCCc----eEeeecCCCCCeEEEEECCCCC-EEEEeeCC--CcEEEeecCCCCceeEEEecCC--------cc----
Q psy16316 92 LSLHDNK----YIRYFPGHTKKVNSLCLSPIDD-TFISGSYD--KTVRLWDLRSPNCQGIMHVSGS--------RP---- 152 (335)
Q Consensus 92 ~~~~~~~----~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D--~~i~vWd~~~~~~~~~~~~~~~--------~~---- 152 (335)
|..+.+. .+..+.-| ..+..+.-++... .+++|+.. ..+++||+.+.+.+ +.-... ++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeec
Confidence 9887432 12222222 4555666666554 56669998 89999999876332 221111 11
Q ss_pred eEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 153 IAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 153 ~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
.+.|-+. ...|++++.-+.+++||.+. ++.|...+.+. +..++++...|+++.++++..-+.+..||++.++..
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~---E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFL---ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcc-cCcceeEeccc---cCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 2345555 78899999999999999985 45677666553 446788999999999999999999999999998765
Q ss_pred ee-ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 231 QT-LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 231 ~~-~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
.. +.+ -.+.+.++..+|++++||++|.|..|||+|..+...+... .-....+.+-+.++
T Consensus 283 g~~~kg---~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv--YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 283 GCGLKG---ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV--YVKSRLTFILLRDD 342 (412)
T ss_pred ccccCC---ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh--hhhccccEEEecCC
Confidence 54 333 4456778999999999999999999999999874333221 12345566676654
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=109.99 Aligned_cols=250 Identities=16% Similarity=0.157 Sum_probs=173.7
Q ss_pred eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC------CCceEeeec-CCCCCeEEEEECCCCCEEEEeeCC
Q psy16316 56 KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH------DNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYD 128 (335)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~------~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D 128 (335)
.+.+.+|...|.++.|+.. ...+++++.|..+++|+++ +.+++.... .|...|.|++|......|.+|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3455667788999999876 5678899999999999985 345666554 456899999999989999999999
Q ss_pred CcEEEeecCCCCceeEEEecC---CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc
Q psy16316 129 KTVRLWDLRSPNCQGIMHVSG---SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 129 ~~i~vWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (335)
++|..-|+.+.+.+.+..... .+.-+..+|..+++++.+.++.|.+||.+... .+...+ ........+..+-|+|
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~-~~~~~~-~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ-NPISLV-LPANSGKNFYTAEFHP 204 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC-CCCcee-eecCCCccceeeeecC
Confidence 999999999988887775443 44456678889999999999999999998632 122222 2222334456788999
Q ss_pred CCCE-EEEEeCCCeEEEEECCCCee-eeeecccccC---CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 206 DGKY-ILISTNGSIIRTFDAYNGQC-LQTLAGFLNN---KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 206 ~~~~-l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~---~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
-... |++++..+-+.+||.+..+. +....+.... ...-..+-|+|+|..|.+--....=.+||+-... +..+..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R-~~V~k~ 283 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR-CFVLKS 283 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc-ceeEec
Confidence 7764 55667777899999875432 1111111111 1111356899999988887666666678876533 333434
Q ss_pred CCCC-------CeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 281 DHPS-------PVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 281 ~h~~-------~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.|.. .+.++.|--+.. +++|+ -++.+|-+.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLP 322 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecC
Confidence 4432 567788887755 67776 368999553
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=118.72 Aligned_cols=243 Identities=14% Similarity=0.202 Sum_probs=171.8
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 103 (335)
-..+.|+.+|.+|+-|+.-|.+-.+|..+......+.. ...|..+.|.+..+...+| .-+.+.+||- .|..+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA---QK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA---QKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh---hhceEEEecC-CCcEEeeh
Confidence 35788999999999999999999999998876544322 3456667776654432222 3566777874 34455556
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 104 PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
+.| ..|..+.|.|..=+|++++..|.++--|+.+++.+..+.. .+..
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~------------------------------- 254 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT------------------------------- 254 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCcc-------------------------------
Confidence 544 5788999999988999999999999999988765432211 1111
Q ss_pred CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
..|+-+|-...+-.|..+|+|.+|.....+.+-.+ ..|.+.+.++++.|+|+|+||.|.|.
T Consensus 255 ----------------~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi---LcH~g~V~siAv~~~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 255 ----------------DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI---LCHRGPVSSIAVDRGGRYMATTGLDR 315 (545)
T ss_pred ----------------chhhcCCccceEEEcCCCceEEecCCCCcchHHHH---HhcCCCcceEEECCCCcEEeeccccc
Confidence 11334455556666777788888877766544333 34667788999999999999999999
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecc--cccccccCCCCccc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIP--TYLSNHQEPDTIDN 324 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~--~~~~~~~~~~~~~~ 324 (335)
.++|||+..-.++..+.. +-+...++||..|.+.++-+..+.||-- +.+.-.+.|+..+.
T Consensus 316 ~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 316 KVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred ceeEeeeccccccceeec--CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence 999999987777666655 3466789999988777777778999953 22223345555443
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=117.12 Aligned_cols=169 Identities=20% Similarity=0.243 Sum_probs=118.3
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc--eEEECC--CCCEEEEEEcCCeEEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP--IAAFDP--EGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~d~~v~iw 175 (335)
.+.+.||++-|+++.|+.+|.+|+|||.|-.+.|||.-..+....++.++... ++.|-| ...++++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34578999999999999999999999999999999988766666665544333 345555 34688899999999999
Q ss_pred EccCCCCC-----ceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCe-------eeeeecccccCCCC
Q psy16316 176 DVRSFDKG-----PFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQ-------CLQTLAGFLNNKGC 242 (335)
Q Consensus 176 d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~-------~~~~~~~~~~~~~~ 242 (335)
|+.+...+ ...+......+...+..++--|++ ..+.++++||+++-+|++... +...+.........
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99853221 111111111122234567888888 678899999999999997521 22222111111122
Q ss_pred ceEEEEcCCC-cEEEEEeCCCcEEEEE
Q psy16316 243 PLEASFTPDS-KYVISGSTDGRIHIWN 268 (335)
Q Consensus 243 v~~~~~sp~~-~~l~tgs~dg~v~iwd 268 (335)
..++..+|.. .+||.|+.|-..++||
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhh
Confidence 3468899964 5799999999999999
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-12 Score=105.79 Aligned_cols=206 Identities=10% Similarity=0.093 Sum_probs=149.1
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce---eEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ---GIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
..+|+|-+|+++...++.+-..+.|.|+.....+.- .++ .+...+..+.|.|..+.+++|+.|+.-.+|.....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-- 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-- 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC--
Confidence 578999999999999999999999999998766522 222 34455677899999999999999999999988532
Q ss_pred CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc--cCCCCceEEEEcCCCcEEEEEeC
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL--NNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
+...+.......+...+++.|+|.++.+++++..+.|.+|=.+.... --+..|. .....|.+++|+|++-+|++||.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCCccccceeeeeccCCcceeccccc
Confidence 22222222233344557899999999999999999988886543321 1111111 13456789999999999999999
Q ss_pred CCcEEEEECC-----C-------------CeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecccccccc
Q psy16316 261 DGRIHIWNAE-----K-------------GFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNH 316 (335)
Q Consensus 261 dg~v~iwd~~-----~-------------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~~~~~ 316 (335)
|+++|+|..- + |..+.... .-.+.|..+.|+|+|+.|+-.+.+-.+...++....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999641 1 11111121 346789999999999999999877666666555444
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-12 Score=101.88 Aligned_cols=149 Identities=13% Similarity=0.238 Sum_probs=107.4
Q ss_pred EEEECCCCCEEEEecC---C-------CeEEEEEccCC-cceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 26 SIDYSADGLLLISCSE---D-------DQIVIYDCELG-TNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~---D-------g~i~lwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+.|+|+|.+|+.-.. | +...||-++.. .....+.. ....|..++|.|+++...++.+..+..+.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5789999987654333 2 33555555322 22233322 34469999999998887777777788999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc--
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-- 168 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (335)
++ ++.+..+. ...++.+.|+|+|++|+.|+.+ |.|.+||+++.+.+....... ...+.|+|+|++++++.+
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEecc
Confidence 97 55566554 5678899999999999998765 569999999766655444333 456789999999999875
Q ss_pred ----CCeEEEEEcc
Q psy16316 169 ----SDTIKLYDVR 178 (335)
Q Consensus 169 ----d~~v~iwd~~ 178 (335)
|+.++||+..
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 6778888874
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-12 Score=120.27 Aligned_cols=214 Identities=17% Similarity=0.267 Sum_probs=146.4
Q ss_pred CCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCC-------CceeEEE-ecCCcceEEECCCCCEEEEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSP-------NCQGIMH-VSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (335)
.|..+..+..|...|..++.++.. .+++|||.||+||+||.+.- ++...++ .......+.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456677888899999999988765 89999999999999998642 1222333 23334556777889999999
Q ss_pred EcCCeEEEEEccCCCCCce---eeEEeccCCCccc-eEEEEcc-CC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCC
Q psy16316 167 VNSDTIKLYDVRSFDKGPF---SNFKFAAEKECDW-TGIKFSA-DG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~-~~~~~s~-~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
+.||.|.+.++......-. ............+ ..-+|.. .. ..++.++.-+.|..||++......+++... ..
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RH 1195 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-cc
Confidence 9999999999875211100 0011111111111 1122222 22 367888888999999998776555554332 34
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC---cEEEeeec----eeEEecc
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF---NMMASACT----NLAFWIP 310 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~~~s~~~----~~~~w~~ 310 (335)
+.+++++.+|.+.+++.|+..|.+-+||+.=+..+.....++..+++.|..+|.. ...++++. .+..|+.
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 6788999999999999999999999999986666665555566788888887754 35555432 3777764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-10 Score=99.62 Aligned_cols=266 Identities=18% Similarity=0.249 Sum_probs=160.6
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++...+....+.-..+.|+|||+++.+++.||.|.++|+.+.+..+.+.... ....+++++++...+ ++.-.++.+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~-v~n~~~~~v 102 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVY-VANYEPGTV 102 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEE-EEEEETTEE
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEE-EEecCCCce
Confidence 456667777655544557899999999999999999999999999888775543 346678888776543 444468899
Q ss_pred EEEEcCCCceEeeecCC-------CCCeEEEEECCCCCEEEEeeCC-CcEEEeecCCCCceeE--EEecCCcceEEECCC
Q psy16316 90 RYLSLHDNKYIRYFPGH-------TKKVNSLCLSPIDDTFISGSYD-KTVRLWDLRSPNCQGI--MHVSGSRPIAAFDPE 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~D-~~i~vWd~~~~~~~~~--~~~~~~~~~~~~~~~ 159 (335)
.++|.++.+.++.++.. ...+.++-.+|....++..-.| +.|-+-|......... +.......-..++|+
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 99999999998887643 3467788888887755555454 7766667665543322 222222334678999
Q ss_pred CCEEEEE-EcCCeEEEEEccCCCC--------C----ceeeEEecc--------------------CCC-----ccc---
Q psy16316 160 GLIFGVG-VNSDTIKLYDVRSFDK--------G----PFSNFKFAA--------------------EKE-----CDW--- 198 (335)
Q Consensus 160 ~~~~~~~-~~d~~v~iwd~~~~~~--------~----~~~~~~~~~--------------------~~~-----~~~--- 198 (335)
++++.++ ..++.+-++|...... . +...+.+.. +.. ..+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 9987664 4556777777554210 0 000000000 000 000
Q ss_pred ---------eEEEEccCCCEEEEE----eCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC--CCc
Q psy16316 199 ---------TGIKFSADGKYILIS----TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST--DGR 263 (335)
Q Consensus 199 ---------~~~~~s~~~~~l~~~----~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~--dg~ 263 (335)
.-++-+|+++++.+. .....|.++|..+.+...++....+ ..+..+.|+++|+++..... ++.
T Consensus 263 ~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~--~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 263 KTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG--KRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT----EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC--CcEeccEECCCCCEEEEEEecCCCE
Confidence 126779999999988 4457899999999987777653222 22678999999996544443 336
Q ss_pred EEEEECCCCeeEEEeC
Q psy16316 264 IHIWNAEKGFKVCVLD 279 (335)
Q Consensus 264 v~iwd~~~~~~~~~~~ 279 (335)
|.+||..+.++...++
T Consensus 341 i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 341 IVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEECCCcEEEEEEE
Confidence 9999999998887775
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-09 Score=93.90 Aligned_cols=271 Identities=14% Similarity=0.237 Sum_probs=163.5
Q ss_pred CeEEEEEc--cCCcceeee-ecccccceEEEEecCCCeeEEeecC--CCCeEEEEEcCCC--ce--EeeecCCCCCeEEE
Q psy16316 43 DQIVIYDC--ELGTNKRTV-FSKKYGVDLIRFTHAKQAAIHASTK--IDDTVRYLSLHDN--KY--IRYFPGHTKKVNSL 113 (335)
Q Consensus 43 g~i~lwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~--~~--~~~~~~H~~~V~~~ 113 (335)
+.|.+|++ ++++....- .........++++++....+..... .++.|..|.+... ++ +............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 78888887 334322111 1233445667787777666655544 5789999988764 32 22333223455689
Q ss_pred EECCCCCEEEEeeC-CCcEEEeecCCCC-ceeE---EEe-----------cCCcceEEECCCCCEEEEEE-cCCeEEEEE
Q psy16316 114 CLSPIDDTFISGSY-DKTVRLWDLRSPN-CQGI---MHV-----------SGSRPIAAFDPEGLIFGVGV-NSDTIKLYD 176 (335)
Q Consensus 114 ~~~~~~~~l~s~s~-D~~i~vWd~~~~~-~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd 176 (335)
+++|++++|+.+.. +|+|.++++.... .... ... ......+.++|+++++.+.. ....|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 99999999988874 8999999998743 2221 211 01123578999998776653 346899999
Q ss_pred ccCCCCCceee-EEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECC--CCee--eeeeccc---ccCCCCceEEE
Q psy16316 177 VRSFDKGPFSN-FKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAY--NGQC--LQTLAGF---LNNKGCPLEAS 247 (335)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~--~~~~--~~~~~~~---~~~~~~v~~~~ 247 (335)
+...... +.. ...........+.+.|+|+++++.+..+ ++.|.+++.. ++.. ...+... .........+.
T Consensus 173 ~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 173 IDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp E-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 8753311 221 1112233334578999999999987665 5679999887 4422 2222211 11112467899
Q ss_pred EcCCCcEEEEEe-CCCcEEEEECC--CCe--eEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccccc
Q psy16316 248 FTPDSKYVISGS-TDGRIHIWNAE--KGF--KVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 248 ~sp~~~~l~tgs-~dg~v~iwd~~--~~~--~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~ 315 (335)
++|||++|.+.. ....|.+|++. ++. .+..++. ....-..++|+|+|++|+.+. .++.++..+...+
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 999999876655 46779999983 232 2333332 122347899999999988775 4688886655444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=99.25 Aligned_cols=148 Identities=17% Similarity=0.360 Sum_probs=98.9
Q ss_pred EEECCCCCEEEEEEc----------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEE
Q psy16316 154 AAFDPEGLIFGVGVN----------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRT 221 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i 221 (335)
+.|+|.|.++++-.. -+...+|.++... .+...... ....++..++|+|+++.+++.. ..+.|.+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l--~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIEL--KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-Cccceeec--cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 456777766554332 1245566554322 22322222 2233578999999999887653 4568999
Q ss_pred EECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC---CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST---DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~---dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
||++ ++.+..+. ......+.|+|+|++|++|+. .|.|.+||..+..++... .|. .++.++|+|+|+++
T Consensus 88 yd~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~-~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHS-DATDVEWSPDGRYL 158 (194)
T ss_pred EcCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccC-cEEEEEEcCCCCEE
Confidence 9996 55555543 233456999999999999875 467999999977766544 354 47899999999999
Q ss_pred Eeeec--------eeEEeccccc
Q psy16316 299 ASACT--------NLAFWIPTYL 313 (335)
Q Consensus 299 ~s~~~--------~~~~w~~~~~ 313 (335)
+++.. .++||.....
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEeccceeccccEEEEEecCe
Confidence 98853 2678866433
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-11 Score=98.89 Aligned_cols=263 Identities=17% Similarity=0.254 Sum_probs=159.6
Q ss_pred ccHHHHhcccce----eeec-cCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcce-----------eeeecc--c
Q psy16316 3 LTDNVIRSYKVA----KLFR-ENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNK-----------RTVFSK--K 63 (335)
Q Consensus 3 ~~~~~~~~~~~~----~~~~-~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~-----------~~~~~~--~ 63 (335)
.+|+++|-|+.. ..++ ..++.|+|++|-|.+. -|+.|.. +-|-+|..+...+. ..+..+ .
T Consensus 117 ~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh 195 (445)
T KOG2139|consen 117 TNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH 195 (445)
T ss_pred ccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC
Confidence 456666544433 3444 3678899999999775 5555554 56789976532211 112222 2
Q ss_pred ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeec-CCCCce
Q psy16316 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL-RSPNCQ 142 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~-~~~~~~ 142 (335)
..|+.++|.+++...+.+ +..|..|++||++++..+....-..+.+.-+.|+||+.+|+.+.-|+..++|.. ++..+.
T Consensus 196 ~pVtsmqwn~dgt~l~tA-S~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e 274 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTA-SFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE 274 (445)
T ss_pred ceeeEEEEcCCCCEEeec-ccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec
Confidence 457888998886544433 345889999999998877665445678899999999999999999999999954 333333
Q ss_pred eEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCcee-------eEEeccCC------------CccceEEEE
Q psy16316 143 GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS-------NFKFAAEK------------ECDWTGIKF 203 (335)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~~~~------------~~~~~~~~~ 203 (335)
.-....+.++...|+|+|..+..... +.=.+|.+......+.. ......+. ..+..+++|
T Consensus 275 rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~law 353 (445)
T KOG2139|consen 275 RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAW 353 (445)
T ss_pred ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeE
Confidence 33334456677889999976544332 22233433221111000 00000000 112357999
Q ss_pred ccCCCEEEEEeCCC--------eEEEEECCCCeeeeee-cccccCCCCceEEEEcC---CCcEEEEEeCCCcEEEEEC
Q psy16316 204 SADGKYILISTNGS--------IIRTFDAYNGQCLQTL-AGFLNNKGCPLEASFTP---DSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 204 s~~~~~l~~~~~~~--------~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~sp---~~~~l~tgs~dg~v~iwd~ 269 (335)
+|.|++|++.-.++ .|.+||.+....+.-. -+.... ..+..++|+| ++.+|..+=..|.+.-|.+
T Consensus 354 DpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 354 DPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 99999999876543 3667777765444322 122222 2356678887 3455555555566665554
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-12 Score=110.31 Aligned_cols=162 Identities=15% Similarity=0.239 Sum_probs=106.2
Q ss_pred ccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE-EcCCCce
Q psy16316 22 DKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL-SLHDNKY 99 (335)
Q Consensus 22 ~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~-~~~~~~~ 99 (335)
..|+|+.|-|.+. .++.+=.+|.+.+||.+... +.....+...++...++ |..+ ...+..+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----------~~t~p~~~~~k~~~~f~-------i~t~ksk~~rNP 282 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----------GATAPSYQALKDGDQFA-------ILTSKSKKTRNP 282 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccc----------cCCCCcccccCCCCeeE-------EeeeeccccCCc
Confidence 6799999998764 56666789999999873211 11111121111111110 0000 0111123
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
+..+.--.+.|+..+|+|||++|++.|.||.+||+|..+.....+++. =+..-+++|+|||+++++|+.|.-|.+|.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 333333345899999999999999999999999999988665544321 1234578999999999999999999999886
Q ss_pred CCCCCceeeEEeccCCCccceEEEEcc
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (335)
..+ -....+.+...|+.++|+|
T Consensus 363 erR-----VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERR-----VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cce-----EEEeccccccceeeEeecc
Confidence 421 1223456777889999997
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-11 Score=102.98 Aligned_cols=240 Identities=13% Similarity=0.155 Sum_probs=162.0
Q ss_pred ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe------eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC
Q psy16316 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR------YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~------~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~ 137 (335)
..++.+.|..+++.-++...+.+..+.+..+....+.. ...+-+++|..+... +..|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 45667777766666666666566666666665544332 223345566655543 3589999999999999988
Q ss_pred CCCce----eEEEecCCcceEEECC-CCCEEEEEEcC--CeEEEEEccCCCCCceeeEE------eccCCCccceEEEEc
Q psy16316 138 SPNCQ----GIMHVSGSRPIAAFDP-EGLIFGVGVNS--DTIKLYDVRSFDKGPFSNFK------FAAEKECDWTGIKFS 204 (335)
Q Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~s 204 (335)
.+... ...........+--.+ ...++++|+.. ..+++||+... .+...-+ +....+...+++.|-
T Consensus 134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred CCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccceec
Confidence 54421 1111222222222223 45677779888 88999999753 1111111 111122234678898
Q ss_pred cC--CCEEEEEeCCCeEEEEECCCCee-eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC
Q psy16316 205 AD--GKYILISTNGSIIRTFDAYNGQC-LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281 (335)
Q Consensus 205 ~~--~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~ 281 (335)
+. ...|++++.-+.+++||++.++. +..+. -....+.++...|+++++.+|..-+.+..||...+........+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 87 88899999999999999987642 33332 23456778899999999999999999999999988766653456
Q ss_pred CCCCeEEEEeCCCCcEEEeeece--eEEecc
Q psy16316 282 HPSPVQTIQFNPKFNMMASACTN--LAFWIP 310 (335)
Q Consensus 282 h~~~v~~v~~sp~~~~~~s~~~~--~~~w~~ 310 (335)
-.+.|.++..||+++++|+++.+ +||+..
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 78999999999999999999854 777654
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-10 Score=94.98 Aligned_cols=233 Identities=12% Similarity=0.102 Sum_probs=140.2
Q ss_pred EEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCC------CcEEEeecCCCCc
Q psy16316 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYD------KTVRLWDLRSPNC 141 (335)
Q Consensus 69 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D------~~i~vWd~~~~~~ 141 (335)
++|..+......+ .|...|+|+.+.-+....-+-+.+.+.-+...=..++|+ -||.. +.|-|||=...++
T Consensus 11 vs~NQD~ScFava---~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 11 VSFNQDHSCFAVA---TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred EEEccCCceEEEE---ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 6666554432222 377789998876333221111222211111111123332 23333 6789999666667
Q ss_pred eeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEE
Q psy16316 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIR 220 (335)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~ 220 (335)
+..+.....+..+.+.++ .+++. ..+.|.+|.....- .....+..... +...++++-+.+..+|+.- -.-|.|+
T Consensus 88 i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~-k~l~~~et~~N-PkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 88 IIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP-KLLHVIETRSN-PKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh-hheeeeecccC-CCceEeecCCCCceEEEcCCCccceEE
Confidence 776767666666666654 34444 45789999876311 11111111111 1112333333333444442 2347899
Q ss_pred EEECCCCee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-EEEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCc
Q psy16316 221 TFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-IHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 221 i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~ 296 (335)
+.|+..-+. ...+.. |.+.+.++++.-+|..+||+|..|+ |||||..+|.++..+. ......|.+++|||+..
T Consensus 163 i~dL~~~~~~~p~~I~A---H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINA---HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEhhhcCcCCceEEEc---ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999876543 233433 5567888999999999999999999 8999999998877664 23345799999999999
Q ss_pred EEEeee--ceeEEecccc
Q psy16316 297 MMASAC--TNLAFWIPTY 312 (335)
Q Consensus 297 ~~~s~~--~~~~~w~~~~ 312 (335)
++|.++ +++++..+..
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 999887 6899987744
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-10 Score=98.91 Aligned_cols=268 Identities=15% Similarity=0.146 Sum_probs=162.7
Q ss_pred EEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEE
Q psy16316 36 LISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115 (335)
Q Consensus 36 lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~ 115 (335)
+++-..++.|.+.|.++.+....+.........+.+++++...+.++ .|+.+.++|+.+.+.++.++... ...++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN--RDGTVSVIDLATGKVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE--TTSEEEEEETTSSSEEEEEE-SS-EEEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc--CCCeEEEEECCcccEEEEEecCC-CcceEEE
Confidence 45667899999999999988888765443344566788777666553 58999999999999999887644 4578999
Q ss_pred CCCCCEEEEee-CCCcEEEeecCCCCceeEEEecC--------CcceEEECCCCCEEEEEEc-CCeEEEEEccCCCCCce
Q psy16316 116 SPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSG--------SRPIAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPF 185 (335)
Q Consensus 116 ~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~ 185 (335)
+++|++++.+. .++.+.++|.++.+....+...+ ....+..+|....++.... .+.|-+.|..... +.
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~--~~ 163 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK--NL 163 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS--CE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc--cc
Confidence 99999887665 68999999999887766553221 1123345677776666555 4777777876532 11
Q ss_pred eeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeeeeeecc-------------cc--------cC----
Q psy16316 186 SNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAG-------------FL--------NN---- 239 (335)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~-------------~~--------~~---- 239 (335)
..... +.........|+|++++++++ .....|.++|..+++....+.. |. .+
T Consensus 164 ~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 164 KVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ceeee--cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 11111 111223468899999998775 4456788888877765432210 00 00
Q ss_pred --------------------------CCCceEEEEcCCCcEEEEE----eCCCcEEEEECCCCeeEEEeCCCCCCCeEEE
Q psy16316 240 --------------------------KGCPLEASFTPDSKYVISG----STDGRIHIWNAEKGFKVCVLDADHPSPVQTI 289 (335)
Q Consensus 240 --------------------------~~~v~~~~~sp~~~~l~tg----s~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v 289 (335)
.+...-+..||+++++.+. ..+..|.++|..+......+...-...+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 0111225678999999888 4558899999998866666543222358899
Q ss_pred EeCCCCcEEEeee--c--eeEEecc
Q psy16316 290 QFNPKFNMMASAC--T--NLAFWIP 310 (335)
Q Consensus 290 ~~sp~~~~~~s~~--~--~~~~w~~ 310 (335)
.|+|+|..+-.+. . .+.++..
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEET
T ss_pred EECCCCCEEEEEEecCCCEEEEEEC
Confidence 9999998654442 2 4666654
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-10 Score=102.35 Aligned_cols=235 Identities=16% Similarity=0.196 Sum_probs=143.6
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~ 120 (335)
...|.++|.+ +...+.+..+...+...+|++++...++.+.. ....+.+||+.+++... +..+...+.++.|+|+++
T Consensus 169 ~~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3467788875 33345555555556777899888765554322 23579999998876543 333556677899999998
Q ss_pred EEE-EeeCCC--cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCC
Q psy16316 121 TFI-SGSYDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 121 ~l~-s~s~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
.|+ +.+.++ .|.+||+.++................|+|+++.++..+. ++ .|.++|+.... ...+.. .
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~---~ 320 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTF---R 320 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeec---C
Confidence 665 455444 588899887665443332222334578999988776554 33 56666765421 222211 1
Q ss_pred CccceEEEEccCCCEEEEEeCCC---eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC---cEEEEE
Q psy16316 195 ECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG---RIHIWN 268 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iwd 268 (335)
........|+|++++++.+..+. .|.+||+.++.. +.+... .......|+||+++|+..+.++ .+++.+
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 12234578999999999887765 789999887543 333221 1123468999999888877754 355555
Q ss_pred CCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 269 AEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 269 ~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
.. +.....+.. +.+.+..++|
T Consensus 396 ~~-g~~~~~~~~-~~g~~~~~~w 416 (417)
T TIGR02800 396 TD-GRFRARLPL-GNGDVREPAW 416 (417)
T ss_pred CC-CceeeECCC-CCCCcCCCCC
Confidence 43 433443432 3455555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-13 Score=125.42 Aligned_cols=236 Identities=19% Similarity=0.290 Sum_probs=166.3
Q ss_pred eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEee
Q psy16316 56 KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135 (335)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd 135 (335)
++.+.+|...|+++.|...+ -.+..++.|..+++|..++..+....+||.+.|+.++.+....+++++|.|..|++|-
T Consensus 183 ikrLlgH~naVyca~fDrtg--~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTG--RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeecccc--ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34456788889988886544 4566777899999999999999999999999999999999888999999999999999
Q ss_pred cCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe
Q psy16316 136 LRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 136 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
+..+..+.++ .+.+.++.++|+|-. +.+.||++++||.+- .................+..+-|-..+.-+++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccccc
Confidence 9988877655 567778888999865 667899999999872 1111100001111112233455556666778888
Q ss_pred CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC-CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
.++.-+.|.+.-..+.... ..-+.++.+ ..+.+++=.+..+++|++.+|...+.+ ++|...+..+.+||
T Consensus 336 ~d~ea~n~e~~~l~~~~~~---------lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNL---------LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHP 405 (1113)
T ss_pred CCcccccchhhHhhhhccc---------eEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccceeeeeecC
Confidence 8887777765422211100 000111212 145666667888999999999888876 57999999999999
Q ss_pred CCcEEE-eee--ceeEEe
Q psy16316 294 KFNMMA-SAC--TNLAFW 308 (335)
Q Consensus 294 ~~~~~~-s~~--~~~~~w 308 (335)
-+..++ +++ +...||
T Consensus 406 fn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred CCcHhhhhccCCCceEee
Confidence 776554 554 345666
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-09 Score=94.45 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=152.5
Q ss_pred ccEEEEEECCCCCEEEEecC----CCeEEEEEccCC-cceee---eecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 22 DKITSIDYSADGLLLISCSE----DDQIVIYDCELG-TNKRT---VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~----Dg~i~lwd~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.....+.++|++++|.+... ++.|..|++... ..+.. ..........++..+++...+.+ .-.++.+.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va-ny~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA-NYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE-ETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE-EccCCeEEEEE
Confidence 33567889999999888866 579999988764 22222 22122334456666665554444 33588999999
Q ss_pred cCC-CceEee---ec--C--------CCCCeEEEEECCCCCEEEEee-CCCcEEEeecCCCC--cee--EEE-ecCC-cc
Q psy16316 94 LHD-NKYIRY---FP--G--------HTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPN--CQG--IMH-VSGS-RP 152 (335)
Q Consensus 94 ~~~-~~~~~~---~~--~--------H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~--~~~--~~~-~~~~-~~ 152 (335)
+.. +..... +. + -.....++.++|++++++... ....|.++++.... ... .+. ..+. -.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 976 333222 21 1 124578999999999776653 34579999997655 322 111 1222 23
Q ss_pred eEEECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEE---eccC---CCccceEEEEccCCCEEEEEeCC-CeEEEEEC
Q psy16316 153 IAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFK---FAAE---KECDWTGIKFSADGKYILISTNG-SIIRTFDA 224 (335)
Q Consensus 153 ~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~---~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~ 224 (335)
-+.|+|+++++. +.-.+++|.++++.... +...... .... .......++++|||++|.++..+ ..|.+|++
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 468999988664 45567899999987322 1222111 1111 11134679999999999987754 67999998
Q ss_pred C--CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC-CCcEEEEEC--CCCeeEE
Q psy16316 225 Y--NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIWNA--EKGFKVC 276 (335)
Q Consensus 225 ~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~--~~~~~~~ 276 (335)
. +++ ++.+.........+..++++|+|++|+++.. ++.|.+|+. .+|....
T Consensus 275 d~~~g~-l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 275 DPATGT-LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp CTTTTT-EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred ecCCCc-eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 3 333 3333322223345889999999999888775 568999866 4665443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=115.18 Aligned_cols=216 Identities=18% Similarity=0.260 Sum_probs=149.8
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..|.||+..|+.+.--.+.+.++|+|.|+|+++|.+...... .
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-------------------------------------~ 771 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-------------------------------------I 771 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-------------------------------------c
Confidence 358899999999987788889999999999999997543211 1
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECC-CCCE-EEEEEc
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDP-EGLI-FGVGVN 168 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~-~~~~-~~~~~~ 168 (335)
.+..+..+|+.|+.+|.++.|..+-+.++++ |+-|.+||.-.++....+ .......+..+.. +..+ ++.++.
T Consensus 772 ~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 772 GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA 849 (1034)
T ss_pred ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc
Confidence 1223556788999999999999988887766 899999997655543311 1111112223332 3333 344577
Q ss_pred CCeEEEEEccCCCCCceeeEEe--ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKF--AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
..+||++|.|+.+ .....+. ....+..+.+++..+.|++++++-..|.|.+.|.++|+.+...+.. .-....+
T Consensus 850 eSTVKl~DaRsce--~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllql 924 (1034)
T KOG4190|consen 850 ESTVKLFDARSCE--WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQL 924 (1034)
T ss_pred hhhheeeeccccc--ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhh
Confidence 8899999998632 2222222 1333455688999999999999999999999999999876654321 1111222
Q ss_pred EEcCCCcEEEEEeCCCcEEE-EECCCCeeE
Q psy16316 247 SFTPDSKYVISGSTDGRIHI-WNAEKGFKV 275 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~i-wd~~~~~~~ 275 (335)
+ -|..+.|+....|..+.+ |...++...
T Consensus 925 a-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 925 A-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred c-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 2 366788898889999999 987766443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-10 Score=104.57 Aligned_cols=202 Identities=18% Similarity=0.241 Sum_probs=132.4
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
..+.++|..... .+.+..+...+.+..|+|+|+.|+.++.+ ..|++||+.+++........+......|+|+++.+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 356677775443 34455567788999999999998887654 47999999887655444344444457899999876
Q ss_pred EEE-EcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C--eEEEEECCCCeeeeeecccc
Q psy16316 164 GVG-VNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S--IIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 164 ~~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~--~i~i~d~~~~~~~~~~~~~~ 237 (335)
+.. ..++ .|.+||+.+.. ...+. ..........|+|+++.|+..+.. + .|+++|+.+++.. .+..
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~---~~~l~---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-- 319 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQ---LTRLT---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-- 319 (417)
T ss_pred EEEECCCCCccEEEEECCCCC---EEECC---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec--
Confidence 643 3333 58888876532 11111 111122356899999988876543 2 5888888776543 3322
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCC---cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.........|+|+|++|+.++.++ .|.+||+.++.... +.. . ......+|+|++.+++.+.
T Consensus 320 -~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~-~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 320 -RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-T-GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred -CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-C-CCCCCceECCCCCEEEEEE
Confidence 122345679999999999888776 78999988765433 222 1 2334568999999887664
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-09 Score=101.03 Aligned_cols=236 Identities=14% Similarity=0.116 Sum_probs=145.2
Q ss_pred eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE
Q psy16316 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122 (335)
Q Consensus 44 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l 122 (335)
.|.++|.+.+ ..+.+..+...+...+|++++....+.+-. ....+.++++.+++..+. ....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 5777787644 445555556667888999988765554422 234688899988765432 2233445578999999877
Q ss_pred E-EeeCCC--cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 123 I-SGSYDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 123 ~-s~s~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
+ +.+.++ .|.+||+.++................|+|+|+.++..+. ++ .|.++|+.... ...+.... .
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~~---~ 331 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFVG---N 331 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCC---C
Confidence 6 555555 588889988765443332223334579999987766553 33 46666665422 22222111 1
Q ss_pred cceEEEEccCCCEEEEEeCC-C--eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-C--cEEEEECC
Q psy16316 197 DWTGIKFSADGKYILISTNG-S--IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-G--RIHIWNAE 270 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-g--~v~iwd~~ 270 (335)
......|+|+|++++..... + .|.++|+.+++. +.+... .. .....|+|||++++..+.+ + .+++.+..
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~-~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT-SL---DESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC-CC---CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 11346899999999877643 2 588999988754 333321 11 1245899999988776654 3 46677774
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
+.....+. .+.+.+...+|+|-
T Consensus 407 -g~~~~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -GRVRLPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred -CCceEECc-CCCCCcCCCccCCC
Confidence 33333443 34567788888884
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=110.88 Aligned_cols=203 Identities=14% Similarity=0.181 Sum_probs=144.4
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
++++.|. .|..+.|-|..-+|++++..|-++.-|+.+|+....+......+...+-.|. -.++..+-..|+|-+|..
T Consensus 204 HClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 204 HCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred eehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCC
Confidence 4556664 4889999999999999999999999999999887776665555555554443 345566677999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
....++..+.-|.++|.++++.++|++++|.+.|..++|||++.......+.......-++++..|.+ +++....|.|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglL--A~~~G~~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLL--ALSYGDHVQI 358 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccce--eeecCCeeee
Confidence 99998888889999999999999999999999999999999998765544444444445566666644 3345568899
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
|.=....++........+.....|..+.|-|-...|=+|..+|.-.+.
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 953211111111111111112256678888877777777666654444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-10 Score=101.14 Aligned_cols=211 Identities=14% Similarity=0.152 Sum_probs=134.0
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
.+.++|.+.+.. +.+..+...+.+..|+|+|+.|+..+.+ ..|.+||+.++....+....+......|+|+|+.++
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 356667665543 4454567789999999999998877654 368899998876654443444444578999998776
Q ss_pred E-EEcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeeccccc
Q psy16316 165 V-GVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 165 ~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
. ...++ .|.++|+.+.. ...+. ..........|+|||+.++..+.. ..|+++++.+++.. .+... .
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~---~~~lt---~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~-~ 330 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQ---LSRVT---NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV-G 330 (430)
T ss_pred EEEccCCCceEEEEECCCCC---eEEcc---cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-C
Confidence 4 33444 57777886532 11111 112223457899999988776542 35888888777643 33211 1
Q ss_pred CCCCceEEEEcCCCcEEEEEeCC-C--cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEecccc
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTD-G--RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTY 312 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~d-g--~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~ 312 (335)
.......|+|||+.|+..+.+ + .|.+||+.++.... +... .......|+|+|.+++..+ +...+|..+.
T Consensus 331 --~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 331 --NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred --CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 122347899999998877653 3 48889988775433 3221 2223568999999887664 3345555444
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-10 Score=104.89 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=103.5
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee-eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR-TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.+.||.+.|+.+.|+.||.+++|.|+|.++|+|++++++... +.++|..++-.+.|.+. .+.+.+-|-+.++|+.
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGV 245 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeEEeccceEEEEEec
Confidence 478999999999999999999999999999999999998877 77899999988888876 5667778999999965
Q ss_pred CCCceEeeecCCC-CCeEEEEECCCCCEEEEeeCCCcEEEeecCC
Q psy16316 95 HDNKYIRYFPGHT-KKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 95 ~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 138 (335)
.. ..+.++.+|. ..++.++..+....++|++.|+.+++||+..
T Consensus 246 ~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 44 3445888886 5699999999889999999999999999754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-09 Score=98.76 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=141.9
Q ss_pred eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC-CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE
Q psy16316 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122 (335)
Q Consensus 44 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l 122 (335)
.+.++|.+.. ..+.+......+...+|+|++...++.+... ...+.++|+.+++.... ..-.+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~-~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGY-NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCC-CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 6677776543 3455555566777889999987665544321 23578889987764332 2112233478999999876
Q ss_pred E-EeeCCCc--EEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 123 I-SGSYDKT--VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 123 ~-s~s~D~~--i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
+ +.+.++. |.++|+.+++...............|+|+++.++..+. ++ .+.++|+.+. ....+.....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~~g~--- 350 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTFEGE--- 350 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEecCCC---
Confidence 5 4566665 77778877665443332223344679999987766543 34 4555555432 2222221111
Q ss_pred cceEEEEccCCCEEEEEeCC-C--eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-Cc--EEEEECC
Q psy16316 197 DWTGIKFSADGKYILISTNG-S--IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-GR--IHIWNAE 270 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-g~--v~iwd~~ 270 (335)
.....+|+|||++++..+.+ + .|.++|+.+++. +.+.... ......|+|||++|+..+.+ +. +++++.
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11346899999999876543 3 466788887754 3332211 11235899999987765543 33 677776
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
++.....+.. +.+.+...+|+|-
T Consensus 425 ~G~~~~~l~~-~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 DGRFKARLPA-GQGEVKSPAWSPF 447 (448)
T ss_pred CCCceEECcC-CCCCcCCCccCCC
Confidence 4554544543 4567788899884
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-08 Score=86.49 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=148.1
Q ss_pred ECCCCCEEEEecC----------CCeEEEEEccCCcceeeeecccc-------cceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 29 YSADGLLLISCSE----------DDQIVIYDCELGTNKRTVFSKKY-------GVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 29 ~s~~g~~lasgs~----------Dg~i~lwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+||||+.|..+.. +..|.+||.++.+....+..... .....++++++...+++--..++.+.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999997766654 88999999999998877654211 123567777766655554445899999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--Ee-cC------CcceEEECC-CCC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HV-SG------SRPIAAFDP-EGL 161 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~-~~------~~~~~~~~~-~~~ 161 (335)
.|+.+++.+..+.- .+...-...+++. .. .-+.||.....-+......... .. .. ..+ .+.+ ++.
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGR 207 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCc
Confidence 99999998887653 1111111111111 11 2224554444333221111100 00 11 112 2233 777
Q ss_pred EEEEEEcCCeEEEEEccCCCCC---ceeeEEeccC----CCccceEEEEccCCCEEEEEe----------CCCeEEEEEC
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKG---PFSNFKFAAE----KECDWTGIKFSADGKYILIST----------NGSIIRTFDA 224 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~----------~~~~i~i~d~ 224 (335)
++.+... |+|.+.|+...... ++..+..... ....+..++++|+++.+.+.. .++.|.++|+
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 7776666 99999996542211 1111111100 123344599999999988853 2357999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEECCCCeeEEEe
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd~~~~~~~~~~ 278 (335)
.+++.+..+.. ...+..++|+||++ +|.+.+ .++.|.+.|..+++.+..+
T Consensus 287 ~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99998887753 23467899999999 777666 5788999999999887776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-08 Score=85.22 Aligned_cols=259 Identities=12% Similarity=0.086 Sum_probs=157.0
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC--------CCCeEEEEEcCCCceEeeecCC-------C
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK--------IDDTVRYLSLHDNKYIRYFPGH-------T 107 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~i~~~~~~~~~~~~~~~~H-------~ 107 (335)
++|.+.|.++.+.+..+.....+-. + +++++...+++... .++.|.+||..+.+.+..+.-- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999988887765443332 3 78887766665542 6889999999999998877631 1
Q ss_pred CCeEEEEECCCCCEEEEee-C-CCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCce
Q psy16316 108 KKVNSLCLSPIDDTFISGS-Y-DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185 (335)
Q Consensus 108 ~~V~~~~~~~~~~~l~s~s-~-D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~ 185 (335)
..-..++++|+|++|+... . +..|-+.|+.+++....+...+...+...+.+...+ -| -|+......+........
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~-~~-~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM-HC-RDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE-Ee-ecCceEEEEecCCCceEE
Confidence 2234788999999888665 3 799999999998887766555443333333322221 11 223222222221111000
Q ss_pred eeEEe-ccCCCccc-eEEEEcc-CCCEEEEEeCCCeEEEEECCCC-----eeeeeeccccc----CCCCceEEEEcCCCc
Q psy16316 186 SNFKF-AAEKECDW-TGIKFSA-DGKYILISTNGSIIRTFDAYNG-----QCLQTLAGFLN----NKGCPLEASFTPDSK 253 (335)
Q Consensus 186 ~~~~~-~~~~~~~~-~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~----~~~~v~~~~~sp~~~ 253 (335)
..... ..+. ..+ ..-.|.+ +|+++.++.. +.|.+.|+... +....+..... ...-..-++++|+++
T Consensus 183 ~~~~vf~~~~-~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 183 KPTEVFHPED-EYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeeecCCc-cccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11110 0000 000 0003455 8888888777 99999995433 22222211000 111122389999998
Q ss_pred EEEEEe----------CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee---ceeEEec
Q psy16316 254 YVISGS----------TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC---TNLAFWI 309 (335)
Q Consensus 254 ~l~tgs----------~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~---~~~~~w~ 309 (335)
.+.... ..+.|.++|..+++.+..+..+ ..++.++|+|+++ .+.... +++.+..
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 777632 2247999999999988887654 4788999999998 555443 4466554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=109.05 Aligned_cols=200 Identities=14% Similarity=0.188 Sum_probs=141.9
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccccc--ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG--VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.+.|+...+..+.+.++.+..+..+.+||...+.....+...... ...+-+.........+++..-+.+.+|.....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666667788888999999999998766554443332221 122223333445566777778899999987554
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
....+.||.+.|.++.++.+|.+++|+|.|.++|+|++.+.+... ...-..+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------------------~~~fgHsaRvw~-- 223 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------------------CTGFGHSARVWA-- 223 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------------------cccccccceeEE--
Confidence 444688999999999999999999999999999999998765322 111224555554
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
+.|+|. .+++++.|-+.++|+.. +..+..+.+|.. ..+..++.+++...++|+
T Consensus 224 ----------------------~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g--~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 224 ----------------------CCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG--KGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred ----------------------EEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh--cceeEEEEcCCceEEEee
Confidence 346665 78888889999999543 344445555543 236678999999999999
Q ss_pred eCCCcEEEEECC
Q psy16316 259 STDGRIHIWNAE 270 (335)
Q Consensus 259 s~dg~v~iwd~~ 270 (335)
+.|+.+++|+..
T Consensus 277 g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 277 GNDSTLKLWDLN 288 (967)
T ss_pred ccCcchhhhhhh
Confidence 999999999874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-09 Score=97.52 Aligned_cols=210 Identities=15% Similarity=0.187 Sum_probs=127.3
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-C--cEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD-K--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
.+.+.|.+.... +.+..+...+.+..|+|+|+.|+..+.+ + .|.+||+.+++........+......|+|+|+.++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 455567655443 3344466788899999999988876543 2 58889998776544333333334568999999776
Q ss_pred E-EEcCCe--EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-C--CeEEEEECCCCeeeeeeccccc
Q psy16316 165 V-GVNSDT--IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-G--SIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 165 ~-~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~--~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
. ...++. |.++|+.+.. ...+. .........+|+||++.++..+. + ..|+++|+.+++.. .+.. ..
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~---~~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~-~g 349 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA---LTRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF-EG 349 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC---eEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEec-CC
Confidence 5 455554 6666765422 22111 11222345789999999887654 2 35777788777643 3321 11
Q ss_pred CCCCceEEEEcCCCcEEEEEeC-CC--cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccc
Q psy16316 239 NKGCPLEASFTPDSKYVISGST-DG--RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPT 311 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~-dg--~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~ 311 (335)
......+|+|||++|+..+. ++ .|.++|+.++.... +... ......+|+|+|.+++... +...+|..+
T Consensus 350 --~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 350 --EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred --CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 11234689999998877665 34 35556777665432 3222 1223458999999877654 223455443
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-09 Score=98.23 Aligned_cols=193 Identities=16% Similarity=0.191 Sum_probs=141.1
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCCceeEEEec----CCcceE--------------------EECCCCCEEEEEEcCCeE
Q psy16316 117 PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS----GSRPIA--------------------AFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 117 ~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~----~~~~~~--------------------~~~~~~~~~~~~~~d~~v 172 (335)
|...+++....||.+|+||...++....+... +..... ..+.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34578999999999999999877655444221 111111 123455677888889999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
-+|++...+ ....-....+...++++.++.+-..|.+++.|..+-.|+....+..+.... ....+.+++.+||+
T Consensus 83 ~~ys~~~g~---it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGGE---ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCCe---EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCC
Confidence 999987532 221112234455678888888888999999999999999998887776654 23346779999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCC-----CcEEEeee---ceeEEecccccccccC
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK-----FNMMASAC---TNLAFWIPTYLSNHQE 318 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~~~s~~---~~~~~w~~~~~~~~~~ 318 (335)
+.|++++ +.|++||+++.+.+..+ .+|+++|++++|--+ |.++.++. ..+.+|..+.+..++.
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks 227 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKS 227 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccch
Confidence 9999998 57999999999888776 579999999999776 67766654 3588898877555543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-08 Score=81.17 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=162.1
Q ss_pred cCCccEEEEEECCCCCEEEEecC---CCeEEEEEccC--Cccee--eeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSE---DDQIVIYDCEL--GTNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~---Dg~i~lwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+.+.++-+.|+|+++.|.++-. +|.|--|.++. |+... .......+..-++..+++...+.+.-. -+.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-SGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-CceEEE
Confidence 56677889999999999888854 57777776664 33211 111122233556777766655554432 478888
Q ss_pred EEcCC-CceEe--eecCCCCC----------eEEEEECCCCCEEEEee--CCCcEEEeecCCCCceeE----EEecCCcc
Q psy16316 92 LSLHD-NKYIR--YFPGHTKK----------VNSLCLSPIDDTFISGS--YDKTVRLWDLRSPNCQGI----MHVSGSRP 152 (335)
Q Consensus 92 ~~~~~-~~~~~--~~~~H~~~----------V~~~~~~~~~~~l~s~s--~D~~i~vWd~~~~~~~~~----~~~~~~~~ 152 (335)
+-+.. |.+.. ....|.+. +....+.|++++|++.. .| .|.++++..+..... +..+..-.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcc
Confidence 88855 33221 12235555 88999999999988874 45 488999986654322 12222223
Q ss_pred eEEECCCCCEEEE-EEcCCeEEEEEccCCCCCceeeEEeccCC------CccceEEEEccCCCEEEEEeCC-CeEEEEEC
Q psy16316 153 IAAFDPEGLIFGV-GVNSDTIKLYDVRSFDKGPFSNFKFAAEK------ECDWTGIKFSADGKYILISTNG-SIIRTFDA 224 (335)
Q Consensus 153 ~~~~~~~~~~~~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~ 224 (335)
-+.|+|++++.-+ .--+++|.+|..... .+....++..... .....++.++|||++|.++..+ ..|.+|.+
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 4689999987644 445789999998764 2233333322111 1123568899999999988665 35888876
Q ss_pred CC-CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-cEEEEECC--CCee
Q psy16316 225 YN-GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-RIHIWNAE--KGFK 274 (335)
Q Consensus 225 ~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-~v~iwd~~--~~~~ 274 (335)
.. +..+..+.....+..++....|+|++++|+++++|+ .|.+|..+ +|..
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 53 233444444444555688999999999999998864 58888654 4543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=94.74 Aligned_cols=249 Identities=22% Similarity=0.367 Sum_probs=164.8
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-ceee----eeccc------------ccceEEEEecCCCeeEEe
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-NKRT----VFSKK------------YGVDLIRFTHAKQAAIHA 81 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~ 81 (335)
...+.|++|.|...|.||++|...|.|.++..+... |... +.+|. ..+..+.|..+.....+.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 356779999999999999999999999999876543 2111 22222 235667777776666666
Q ss_pred ecCCCCeEEEEEcCCCc------------------------------------------eEeee-cCCCCCeEEEEECCC
Q psy16316 82 STKIDDTVRYLSLHDNK------------------------------------------YIRYF-PGHTKKVNSLCLSPI 118 (335)
Q Consensus 82 ~~~~d~~i~~~~~~~~~------------------------------------------~~~~~-~~H~~~V~~~~~~~~ 118 (335)
....|.++++|.+.... +.+.+ .+|.-.|++++++.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 66789999999875431 01122 468888999999999
Q ss_pred CCEEEEeeCCCcEEEeecCCCC-ceeEEEe--------cCCcceEEECCC-CCEEEEEEcCCeEEEEEccCCCC--Ccee
Q psy16316 119 DDTFISGSYDKTVRLWDLRSPN-CQGIMHV--------SGSRPIAAFDPE-GLIFGVGVNSDTIKLYDVRSFDK--GPFS 186 (335)
Q Consensus 119 ~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~--~~~~ 186 (335)
...++|+ .|=.|.+|++.... +...+.. ...+....|+|. ++++.-.+..|+|++-|+|.... .+..
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888887 68889999987432 2222221 123345678885 57777888899999999983110 0000
Q ss_pred eE---------EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-eeeeeeccccc---------CCCC---ce
Q psy16316 187 NF---------KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLN---------NKGC---PL 244 (335)
Q Consensus 187 ~~---------~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~---------~~~~---v~ 244 (335)
.+ .+..+....+..+.|+++|+++++-. --+|++||.+.. .+++++.-|.. ...+ -.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 00 01112223456799999999988753 357999998753 34444421110 1112 23
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
.+.||-|.+.+.+||.....-++-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5789999999999999988888863
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-08 Score=90.67 Aligned_cols=242 Identities=12% Similarity=0.046 Sum_probs=139.5
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCee-EEeecCC--CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA-IHASTKI--DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~ 119 (335)
+.|.+.|.+.+. .+.+..........+|+|++... ++..+.. ...|.+.++.+++..+.. ...+......|+|||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 356666765443 33344344445667999998653 3222222 345677788776543322 223344567999999
Q ss_pred CEEEEeeC-----CCcEEEeecCCC---CceeEEEec-CCcceEEECCCCCEEEEEE-cCCeEEEEEccCC-CCCceeeE
Q psy16316 120 DTFISGSY-----DKTVRLWDLRSP---NCQGIMHVS-GSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSF-DKGPFSNF 188 (335)
Q Consensus 120 ~~l~s~s~-----D~~i~vWd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~-~~~~~~~~ 188 (335)
+.|+..+. |-.+..||+..+ ....+.... +......|+|+|+.++..+ .++...+|.+... .......+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 88776542 334455777653 222222221 2223468999999777655 4565566654321 11111111
Q ss_pred EeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC---CC
Q psy16316 189 KFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST---DG 262 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~---dg 262 (335)
. ..........|||||+.|+..... ..|.+||+.+++.. .+... ...+....|+|||+.|+..+. ..
T Consensus 323 t---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 323 T---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTS---PENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred c---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCC---CCCccceEECCCCCEEEEEECCCCCc
Confidence 1 111233467899999998876543 46999999988653 33221 123456899999998775433 35
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.|+++|+..+...... . ..+.+...+|+|..
T Consensus 396 ~L~~vdl~~g~~~~Lt-~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIV-I-GSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEee-c-CCCcccCceecCCC
Confidence 6888898776544433 2 34566778898854
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-09 Score=95.15 Aligned_cols=218 Identities=12% Similarity=0.142 Sum_probs=127.1
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCE--E-EEeeCC--CcEEEeecCCCCceeEEEecCCcceEEECCCCCE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT--F-ISGSYD--KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~--l-~s~s~D--~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
.+.+.|.+.+...+ +......+.+-.|+|+|+. + .....+ ..|.+.|+.+++...+....+......|+|||+.
T Consensus 166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 45566666555443 3334556678899999874 3 233333 3577778887776655555555555789999988
Q ss_pred EEEEEc-----CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCe--EEEEECCC-Ceeeeee
Q psy16316 163 FGVGVN-----SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSI--IRTFDAYN-GQCLQTL 233 (335)
Q Consensus 163 ~~~~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~--i~i~d~~~-~~~~~~~ 233 (335)
++..+. +-.+.+|++.....+....+. ..........+|+|||+.|+..+. ++. |+++++.. +...+.+
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt--~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLL--NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEee--cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 876553 223444666532111111111 111112245789999998887653 454 44445532 2223334
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCC---CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEE
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTD---GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAF 307 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~ 307 (335)
... ...+....|||||+.|+..+.+ ..|++||..++...... . ....+....|+|+|..++... +...+
T Consensus 323 t~~---~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 323 TKK---YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-T-SPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred ccC---CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-C-CCCCccceEECCCCCEEEEEECCCCCceE
Confidence 322 1234568999999988876543 36999999887654332 2 234567899999998776432 23345
Q ss_pred eccccc
Q psy16316 308 WIPTYL 313 (335)
Q Consensus 308 w~~~~~ 313 (335)
|..+..
T Consensus 398 ~~vdl~ 403 (428)
T PRK01029 398 YLISLI 403 (428)
T ss_pred EEEECC
Confidence 544443
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-08 Score=88.26 Aligned_cols=282 Identities=12% Similarity=0.153 Sum_probs=159.0
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEe-----e---cCCCCeEEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA-----S---TKIDDTVRYL 92 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~d~~i~~~ 92 (335)
....+...++++|+++|-+ .+..++|++..++..+.+.... ....+-|++.......- . ....-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3446778889999988766 4568999999888643333222 55666666544322110 0 0113456799
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EEEecCCcceEEECCCC--CEEEE----
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IMHVSGSRPIAAFDPEG--LIFGV---- 165 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~---- 165 (335)
+++++.....++.-...=++..|++|..+. .=-..+.+.++|+...+... .++. ..+....++|.+ ..+|+
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCccceeeeeec-cceeeEEecCCCCCceEEEEccC
Confidence 998854444444322222788888876432 22235678999987643221 1121 112223333331 11111
Q ss_pred -EEcCCeEEEEEccCCCC---------------------------------------C-----ce-------eeEEeccC
Q psy16316 166 -GVNSDTIKLYDVRSFDK---------------------------------------G-----PF-------SNFKFAAE 193 (335)
Q Consensus 166 -~~~d~~v~iwd~~~~~~---------------------------------------~-----~~-------~~~~~~~~ 193 (335)
.+.-..|+||....... . .+ ........
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 11222344433220000 0 00 01111223
Q ss_pred CCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC---CCcEEEEE
Q psy16316 194 KECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST---DGRIHIWN 268 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~---dg~v~iwd 268 (335)
...+|.++.|+|+++-+++.- -=..+.+||++-.- +..+- . +.-..+-|+|.|++|+-+|- -|.|.|||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~--e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFP--E---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCC--C---CCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 455678899999998776542 23568888876432 22221 1 12234889999999888774 48899999
Q ss_pred CCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--------ceeEEecccccccc
Q psy16316 269 AEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--------TNLAFWIPTYLSNH 316 (335)
Q Consensus 269 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--------~~~~~w~~~~~~~~ 316 (335)
+.+-.++..... ..-+-..|+|+|.++.++. ..++||..+....+
T Consensus 343 v~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 343 VPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred ccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 988555554443 2335679999999998875 23789977665554
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=91.88 Aligned_cols=253 Identities=15% Similarity=0.181 Sum_probs=161.0
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEE-ccCCcceeeeecc-cccceEEEEecCCCeeEEeecCCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD-CELGTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+.+.+.+.++||.+.|+....-|-..-+.+.+.|.++|||- .+.++--..+... ..++....+.. +...+..+-..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEec
Confidence 45677788999999999999999888899999999999994 3344332222211 12233333333 33333444455
Q ss_pred CeEEEEEc----CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCE
Q psy16316 87 DTVRYLSL----HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 87 ~~i~~~~~----~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
+++.=+.+ +....++.+..|...|..+-|+....++++.+.|..+.---.+.+....-+..........++.. +
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~ 167 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--Y 167 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--E
Confidence 66655433 44566788889999999999999889999999999875444444443322211111111111111 3
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee-eeecccccCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-QTLAGFLNNKG 241 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~~~ 241 (335)
..+|-..+.+.+-.+...... .+....++...+.+++|.|....|.++..|..+.+||+--.+-. ..+.+|. .
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~---~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~---~ 241 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQ---LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN---D 241 (404)
T ss_pred EEecccccceEEEEEeecCCc---eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch---h
Confidence 444555555555444322112 22334556677889999999999999999999999998643321 2333333 2
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
.+..+..-+--+.|.++++||.|.+||++.
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 334454445567899999999999999863
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-10 Score=101.67 Aligned_cols=247 Identities=13% Similarity=0.158 Sum_probs=167.9
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
......|+.|+.+..++|.||.||.+++-.+.+...-.... + +.+ ..+-..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~----------------g-laa------------~snLsm 63 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS----------------G-LAA------------ASNLSM 63 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc----------------c-ccc------------ccccch
Confidence 45668999999999999999999999999887653211110 0 000 011112
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe---cCCcceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV---SGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
-++++||++.|.-+.|+.+.+.|-|...+|.|.+|=+-.++....+.. ...+..+.|..+|..++....||.|.+=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 356889999999999999999999999999999998877665433322 22344568899999999999998887654
Q ss_pred ccCCCCCceeeEEeccC-CCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-------eeeeeeccc-ccCCCCceEEE
Q psy16316 177 VRSFDKGPFSNFKFAAE-KECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-------QCLQTLAGF-LNNKGCPLEAS 247 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-------~~~~~~~~~-~~~~~~v~~~~ 247 (335)
+...+ . +..+ .......+.|++|.+.++.+-..+.+.+||.... +|.-...+. .+....+..+.
T Consensus 144 vdGNR---I----wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 144 VDGNR---I----WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred eccce---e----cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 43211 0 0001 0112345789999999998888999999997532 121111111 11111122333
Q ss_pred E--------cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 248 F--------TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 248 ~--------sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
| -||...||.+-.+|++.|-...+...+..++.+ ..+....|+|+|.++|.++.+
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence 3 368889999999999999876655555555543 678899999999999988643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-08 Score=98.27 Aligned_cols=246 Identities=14% Similarity=0.202 Sum_probs=156.2
Q ss_pred EEEEECCC-CCEEEEecCCCeEEEEEccCCcceeeeec-cc-------------ccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 25 TSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFS-KK-------------YGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 25 ~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++++++ |.++++-+..+.|++||.... ....+.. .. .....+++.++++..+++. ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD-t~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD-TENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe-CCCceE
Confidence 36788874 668888888999999998643 3322221 11 1235566666544433333 346788
Q ss_pred EEEEcCCCceEeeecC----------C-------CCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEE-----
Q psy16316 90 RYLSLHDNKYIRYFPG----------H-------TKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMH----- 146 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~----------H-------~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~----- 146 (335)
+.+|+.++. +.++.+ . -..-..++++| ++.++++.+.++.|++||..++.......
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987754 333321 0 01235789999 56777888899999999987764422110
Q ss_pred -ecC---------CcceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCcee---------eEEec-cC------CCccce
Q psy16316 147 -VSG---------SRPIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFS---------NFKFA-AE------KECDWT 199 (335)
Q Consensus 147 -~~~---------~~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~---------~~~~~-~~------~~~~~~ 199 (335)
..+ ....++++|++. ++++.+.++.|++||+.+....... ...+. .+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000 112367889887 6667777899999998753210000 00000 00 001235
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc-----------cCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL-----------NNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
+++++++|..+++-..++.|++||..++...... +.. ..-..+..++++|+|+.+++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 7899999998888888999999999887654322 211 0112467899999999999999999999999
Q ss_pred CCCCee
Q psy16316 269 AEKGFK 274 (335)
Q Consensus 269 ~~~~~~ 274 (335)
+.++..
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 987643
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-08 Score=89.74 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=137.1
Q ss_pred CCCCCEEEEecCCCeEEEEEccCCcceeeeec---ccccceEEEEe------------------cCCCeeEEeecCCCCe
Q psy16316 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFT------------------HAKQAAIHASTKIDDT 88 (335)
Q Consensus 30 s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~------------------~~~~~~~~~~~~~d~~ 88 (335)
.|-+.++|....||.+|+||+.++.....+.. .........|. ...+..+++.+...+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45567999999999999999988765443321 11222222331 1223456667777899
Q ss_pred EEEEEcCCCceEeeec--CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEE
Q psy16316 89 VRYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (335)
|.+|++..++....+. .|.+.|+++.++.+-..|-|++.|+.+..|+....+........ .....+.++||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999887776 68999999999998899999999999999999887766655332 23456788999999888
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-----CCEEEEEeC-CCeEEEEECCC
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-----GKYILISTN-GSIIRTFDAYN 226 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~~~~~-~~~i~i~d~~~ 226 (335)
++ ++|++||+++.+ ......++..+++.+.|.-+ |.+++++.. +..+.+|-.+.
T Consensus 162 as--~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCce-----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 86 699999998742 23334566778888888766 677776543 34466665543
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-08 Score=88.18 Aligned_cols=270 Identities=12% Similarity=0.204 Sum_probs=160.8
Q ss_pred cCCccEEEEEECCCCCEEEEecC-----------CCeEEEEEccCCcceeeeeccc---ccceEEEEecCCCeeEEeecC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSE-----------DDQIVIYDCELGTNKRTVFSKK---YGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~-----------Dg~i~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (335)
.|.+ |.-+.|||+.+||+|=|. -..++|||+.+|..++.+.... ..-+..+|+++.....-..
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-- 324 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-- 324 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEec--
Confidence 3555 889999999999999774 2678999999999888765422 2346788888766443332
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCC-cceEEECC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGS-RPIAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~ 158 (335)
.+.|-+|+...-.++..-.-.-..|....|+|.++.|+--+.. ..+-+-.+-+.+.++...+-.. -+-+-|..
T Consensus 325 -~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 325 -GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred -cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 3677787765422221111123678888999987776653321 1223333333333322211111 12245667
Q ss_pred CCCEEEEEEcC----------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---CCeEEEEECC
Q psy16316 159 EGLIFGVGVNS----------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---GSIIRTFDAY 225 (335)
Q Consensus 159 ~~~~~~~~~~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---~~~i~i~d~~ 225 (335)
.|.+++.--.. -.+.|+.++.. ..|.... +....+-..+|-|.|..+++-+. ..++.+|..+
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK-dIpve~v----elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK-DIPVEVV----ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeecc-CCCceee----ecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 77777643211 12444444431 1122111 12233456889999998776443 3568889877
Q ss_pred C-Ce---eeeeecccccCCCCceEEEEcCCCcEEEEEe---CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 226 N-GQ---CLQTLAGFLNNKGCPLEASFTPDSKYVISGS---TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 226 ~-~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs---~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
+ .. .++++.. .....+.|+|.|++++.++ ..|.+.++|+........-...|. .-+.+-|.|.|.|+
T Consensus 479 ~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYv 552 (698)
T KOG2314|consen 479 TNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYV 552 (698)
T ss_pred cCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEE
Confidence 3 22 2222221 2234689999999988765 468899999874222222234465 45789999999999
Q ss_pred Eeeec
Q psy16316 299 ASACT 303 (335)
Q Consensus 299 ~s~~~ 303 (335)
++++.
T Consensus 553 vT~ss 557 (698)
T KOG2314|consen 553 VTSSS 557 (698)
T ss_pred EEeee
Confidence 98864
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=91.33 Aligned_cols=252 Identities=16% Similarity=0.243 Sum_probs=160.6
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEe-----ecCCCCeEEEEEcCCCce
Q psy16316 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA-----STKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~i~~~~~~~~~~ 99 (335)
.+..|+.|..+.|=- ..+.+.+|+...-.-... .-+..++....+++.+....+| ..+.-..+|+|.......
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 478888888754322 235789999876332221 1235567788888775544333 344567889988763322
Q ss_pred Eeeec--C-CCCCeEEEEECCCCC---EEEEeeCCC---------cEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 100 IRYFP--G-HTKKVNSLCLSPIDD---TFISGSYDK---------TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 100 ~~~~~--~-H~~~V~~~~~~~~~~---~l~s~s~D~---------~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
...+. . -...=..+.|++-|+ .|++.--|+ ++.+.++....+..-+.-.+.+..+.|+|.+..|+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~ 286 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFA 286 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEE
Confidence 11110 0 112223567777664 334444455 56777777444443334467778899999998887
Q ss_pred EE--EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccccC
Q psy16316 165 VG--VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 165 ~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
++ ..=-.+.|||++- .+...+. ..+-+.+-|+|.|++++.++-| |.+-+||..+.+++..+...
T Consensus 287 VvyGfMPAkvtifnlr~---~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--- 355 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRG---KPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--- 355 (566)
T ss_pred EEEecccceEEEEcCCC---CEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---
Confidence 64 4556899999863 3333221 2234678999999999988765 67999999998887776532
Q ss_pred CCCceEEEEcCCCcEEEEEe------CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 240 KGCPLEASFTPDSKYVISGS------TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs------~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
..+-+.|+|||++|+|+. .|..++||+. +|.++.... .+...+.+.|.|-
T Consensus 356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~--f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM--FKSELLQVEWRPF 411 (566)
T ss_pred --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh--hhHhHhheeeeec
Confidence 224589999999999887 3677999998 466554321 2225778888863
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=91.64 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=104.8
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEc-cCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDC-ELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
--+.+.+..|..+|+.+-|+....++++.+.|+.+ .|-+ +.+.-+....- ........+ .......+-..+.+
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~-~~~~t~~~~----d~~~~fvGd~~gqv 177 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNF-ETPASALQF----DALYAFVGDHSGQI 177 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEe-eccCCCCce----eeEEEEecccccce
Confidence 34456678999999999999999999999999887 4543 33322211100 000000000 01112222233444
Q ss_pred EEEEc--CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee--EEEecCCcceEEECCCCCEEEE
Q psy16316 90 RYLSL--HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 90 ~~~~~--~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
....+ ..-..+.++.+|.+.+.+++|.+....|++|..|..+.+||+...+-.. ...+.+.+..+..-+.-+.+.+
T Consensus 178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee
Confidence 44333 4456788899999999999999999999999999999999997554332 2222222333333344566778
Q ss_pred EEcCCeEEEEEccC
Q psy16316 166 GVNSDTIKLYDVRS 179 (335)
Q Consensus 166 ~~~d~~v~iwd~~~ 179 (335)
+..|+.|-+||++.
T Consensus 258 ~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNV 271 (404)
T ss_pred ccCCCeEEEEeccc
Confidence 88999999999875
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-08 Score=81.13 Aligned_cols=243 Identities=15% Similarity=0.103 Sum_probs=149.1
Q ss_pred EEEECC-----CCCEEEEecCCCeEEEEEccCCccee-eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 26 SIDYSA-----DGLLLISCSEDDQIVIYDCELGTNKR-TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 26 ~v~~s~-----~g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
.+.|-| .-.+||.||.-|...+|.+.+..... ....+...+..+.-..+....+ .-++.|.++++.+++.+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~-~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPL-NIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccce-eeccCCcceeEEEEecCcc
Confidence 456666 34589999999999999998655433 3333444444332222222111 1234577777777654432
Q ss_pred EeeecCCCC--CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc--eeEE--EecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 100 IRYFPGHTK--KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 100 ~~~~~~H~~--~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
-.. -|.. .++++++++++.++++.+.-..|-.+.+..... .... .....--...|+.....||++..|+++.
T Consensus 151 ~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 151 KFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA 228 (344)
T ss_pred cce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence 211 2433 389999999999999999999999998865332 1111 1122223457888888999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCC--EEEEEeCCCeEEEEECCCCeeeeeecccc----c-CCCCceEE
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK--YILISTNGSIIRTFDAYNGQCLQTLAGFL----N-NKGCPLEA 246 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~~~~~----~-~~~~v~~~ 246 (335)
|||+|.+.............+...+..+.|+|.|. +|+.+-.-+.+.+.|+++++..+.+.-.. . ....+...
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 99999865433333334455667788899998765 34444445679999999987655442111 1 11223445
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.|+-++.-+.+.+++ .+.=|+..+.
T Consensus 309 ~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 309 NFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred cccCCCcccccccch-hhheeecccc
Confidence 565555544444443 2555655443
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-09 Score=92.39 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=132.6
Q ss_pred CCCCCeEEEEECCCCCE-EEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCCCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 105 GHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~-l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
+|...-+.+..+|||++ ++||.+--.|+++|+..-.....-|... .+....++.|-...+--..|++|.+-..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~---- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY---- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc----
Confidence 47788899999999986 5667788999999998654433333322 23334444454444444566666543211
Q ss_pred CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
+...... .+..-..++++.-..-|++++.+..|+=++++.|..+..+.. ....+..+..+|-..+|++|+.||
T Consensus 125 G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 125 GRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred Ceeeeee----cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCc
Confidence 1111111 112224567766666677777788899999999987766643 345677889999999999999999
Q ss_pred cEEEEECCCCeeEEEeCC-----CCCCC-----eEEEEeCCCCcEEEeeece--eEEeccccc
Q psy16316 263 RIHIWNAEKGFKVCVLDA-----DHPSP-----VQTIQFNPKFNMMASACTN--LAFWIPTYL 313 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~-----~h~~~-----v~~v~~sp~~~~~~s~~~~--~~~w~~~~~ 313 (335)
.|..||.....++..+.. .|++. |+++.|+.+|..++.|..+ +.||.+++.
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 999999876655555432 24454 9999999999999988754 555555443
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=95.25 Aligned_cols=250 Identities=14% Similarity=0.212 Sum_probs=174.7
Q ss_pred ccCCccEEEEEECCCC--CEEEEecCCCeEEEEEcc-CCcce--eeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 18 RENTDKITSIDYSADG--LLLISCSEDDQIVIYDCE-LGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.||...|+-..|-|.. .-+++++.||.+++=.+. ++.+. ..+..|...+..++.-|+.... +.+++.|+.+.-+
T Consensus 182 SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~-f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKP-FLSCGEDAVVFHI 260 (559)
T ss_pred cccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCc-ccccccccceeee
Confidence 4799999999998854 579999999999997654 33333 3345577888888887765443 4566678999888
Q ss_pred EcCCCceEeee---cCCCC---CeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCce------eEE-------EecCCcc
Q psy16316 93 SLHDNKYIRYF---PGHTK---KVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQ------GIM-------HVSGSRP 152 (335)
Q Consensus 93 ~~~~~~~~~~~---~~H~~---~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~------~~~-------~~~~~~~ 152 (335)
|+..+.+...+ +.+.. ...+++.+|... .++.++.|-.+|++|.+.-... ..+ ...-.++
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 98776543322 33444 567899999764 8999999999999998753221 111 1122356
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCC------C---ceeeEEeccCC-CccceEEE-EccCCCEEEEEeCCCeEEE
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDK------G---PFSNFKFAAEK-ECDWTGIK-FSADGKYILISTNGSIIRT 221 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~------~---~~~~~~~~~~~-~~~~~~~~-~s~~~~~l~~~~~~~~i~i 221 (335)
++.++.++.-+.++..|-.|.+|.-..... . +..+..+..+. ...|.++- |.|..+|+++|++=|.|.+
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 778888888888888999999995432211 0 11111011111 12355555 5899999999999899999
Q ss_pred EECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
|+-.+++.++.+.+-. .-|.|+-=||--..||+.|.|..|+||...+
T Consensus 421 W~K~t~eii~~MegDr---~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDR---HVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred EecchhHHHHHhhccc---ceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9999998887776532 2466778888889999999999999998643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-06 Score=71.76 Aligned_cols=271 Identities=14% Similarity=0.219 Sum_probs=166.3
Q ss_pred CCeEEEEEccCCccee---eeecccccceEEEEecCCCeeEEeec-CCCCeEEEEEcCC--CceEe----eecCCCCCeE
Q psy16316 42 DDQIVIYDCELGTNKR---TVFSKKYGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHD--NKYIR----YFPGHTKKVN 111 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~--~~~~~----~~~~H~~~V~ 111 (335)
+..|.+|++++..-.. ........+.-+++.++......+-. +.++.|.-|.++. |+... .+.|+ +-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCe
Confidence 6789999987443211 12233455677888877654443322 2367777776654 44322 22333 237
Q ss_pred EEEECCCCCEEEEeeC-CCcEEEeecCC-CCce---eEEEecCC----------cceEEECCCCCEEEEEE-cCCeEEEE
Q psy16316 112 SLCLSPIDDTFISGSY-DKTVRLWDLRS-PNCQ---GIMHVSGS----------RPIAAFDPEGLIFGVGV-NSDTIKLY 175 (335)
Q Consensus 112 ~~~~~~~~~~l~s~s~-D~~i~vWd~~~-~~~~---~~~~~~~~----------~~~~~~~~~~~~~~~~~-~d~~v~iw 175 (335)
-+++++++++|++++. -|.|.+..++. +... .+..+.+. .....+.|+++++++.. ....|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 8999999999999986 58999999976 3322 22222222 34567899998887764 23478999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCC-eeeeeecccc------cCCCCceEEE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNG-QCLQTLAGFL------NNKGCPLEAS 247 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~-~~~~~~~~~~------~~~~~v~~~~ 247 (335)
++......+...... .....-+.|.|+|++++..+.++ +++|-+|..... ..++.+..+. .......++.
T Consensus 173 ~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 173 DLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 987533222222222 12223467999999999887665 678888887653 2333333211 1223446788
Q ss_pred EcCCCcEEEEEeC-CCcEEEEECCCC-eeEEEe--CCCCCCCeEEEEeCCCCcEEEeee---ceeEEecccccccc
Q psy16316 248 FTPDSKYVISGST-DGRIHIWNAEKG-FKVCVL--DADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSNH 316 (335)
Q Consensus 248 ~sp~~~~l~tgs~-dg~v~iwd~~~~-~~~~~~--~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~~ 316 (335)
.+|||++|.+... ...|-+|.+... -++... ...+...=.+..|+|.+.+|+.+. .++.++..+...+.
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 9999999988765 346888876542 222222 122333346788999999988884 46888876665553
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=66.71 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=36.3
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD 49 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd 49 (335)
++.++|++|+++|++++|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46789999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-06 Score=73.08 Aligned_cols=220 Identities=18% Similarity=0.177 Sum_probs=137.8
Q ss_pred EEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 26 SIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 26 ~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
++.|.+ +|.++++--..+.|..||..++.... +... ....+.+.......+++. .+.+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~~---~~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVAD---SGGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEEE---TTCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEEE---cCceEEEecCCCcEEEEee
Confidence 567887 77888888889999999998875432 1111 144555553333333333 3455666988886544333
Q ss_pred C-----CCCCeEEEEECCCCCEEEEeeCC--------CcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEEcCC
Q psy16316 105 G-----HTKKVNSLCLSPIDDTFISGSYD--------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGVNSD 170 (335)
Q Consensus 105 ~-----H~~~V~~~~~~~~~~~l~s~s~D--------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 170 (335)
. .....+.+++.|+|++.++.... +.|..++.. ++.......-....-++++|+++.+ ++-+..+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 2 34568999999999988886644 457777766 4433333333334567899999755 5667778
Q ss_pred eEEEEEccCCCCCceeeEE-e--ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 171 TIKLYDVRSFDKGPFSNFK-F--AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~-~--~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
.|..+++..... ...... . .........+++++++|++.++....+.|.+++.. |+.+..+... ...+++++
T Consensus 157 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~ 231 (246)
T PF08450_consen 157 RIWRFDLDADGG-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCA 231 (246)
T ss_dssp EEEEEEEETTTC-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEE
T ss_pred eeEEEecccccc-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEE
Confidence 899999864322 111111 1 11111124679999999988888888999999988 8777766543 23578899
Q ss_pred E-cCCCcE-EEE
Q psy16316 248 F-TPDSKY-VIS 257 (335)
Q Consensus 248 ~-sp~~~~-l~t 257 (335)
| .|+.+. ++|
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 9 466444 444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-07 Score=87.71 Aligned_cols=287 Identities=15% Similarity=0.226 Sum_probs=177.4
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEE----EccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE---
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIY----DCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL--- 92 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--- 92 (335)
..+.|.++.|-++..-++.+..+|.|.+. |...... ..+-.-..++.+.+|+|+.+...++++ ++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~--~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTG--EGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeC--CCEEEEEecc
Confidence 45789999999999999999999999999 5444332 222334678999999999988777665 2333221
Q ss_pred -E-----------cCCCceE--------eeecC------------------------CCCCeEEEEECCCCCEEEEeeC-
Q psy16316 93 -S-----------LHDNKYI--------RYFPG------------------------HTKKVNSLCLSPIDDTFISGSY- 127 (335)
Q Consensus 93 -~-----------~~~~~~~--------~~~~~------------------------H~~~V~~~~~~~~~~~l~s~s~- 127 (335)
+ +...+.+ ..|+| +.+.-..++|-.||.+++..+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1 1111111 11111 2234457889999999888764
Q ss_pred --C---CcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEc---CCeEEEEEccCCCCCceeeEEecc-CCCcc
Q psy16316 128 --D---KTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVN---SDTIKLYDVRSFDKGPFSNFKFAA-EKECD 197 (335)
Q Consensus 128 --D---~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~ 197 (335)
+ ..+|+|+-. +....+. ...+....++|.|.|+++|+... ...|.+|.=+..+ ...+.... .....
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr---hgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR---HGEFTLRFDPEEEK 306 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE---eeeEecCCCCCCce
Confidence 2 578999855 4433222 33455567899999999988764 3466666543321 22222221 22345
Q ss_pred ceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEEC----CCC
Q psy16316 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNA----EKG 272 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~----~~~ 272 (335)
+..+.|++|+..||+...+. |++|...+....-+..-.......+..+.|+|.. ..|.....+|.+..++. ..+
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 68899999999999987666 9999988765433222222222334458999954 45666666666655432 111
Q ss_pred --------eeEEEeC----------------------CCCCCCeEEEEeCCCCcEEE--eeeceeEEecccccc
Q psy16316 273 --------FKVCVLD----------------------ADHPSPVQTIQFNPKFNMMA--SACTNLAFWIPTYLS 314 (335)
Q Consensus 273 --------~~~~~~~----------------------~~h~~~v~~v~~sp~~~~~~--s~~~~~~~w~~~~~~ 314 (335)
.....++ -.-+.+|.+++|+|++..+| +.++++.+|.++...
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 11346899999999986444 445678888764443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-07 Score=80.73 Aligned_cols=230 Identities=15% Similarity=0.147 Sum_probs=133.6
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeE
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVN 111 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~ 111 (335)
++..++.++.|+.+..+|.++|+................. ... .+ ..+..++.+..+|.++++.+-.++.....+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~-~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANG-LV-VVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECC-EE-EEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 3566777778888888888888766543221111000111 112 22 2234588899999999887765543322111
Q ss_pred -----EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc------ce--EEECC--CCCEEEEEEcCCeEEEEE
Q psy16316 112 -----SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR------PI--AAFDP--EGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 112 -----~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~------~~--~~~~~--~~~~~~~~~~d~~v~iwd 176 (335)
+... .+..++.++.++.+..+|.++++........... .. ..-+| .+..+.+++.++.+..+|
T Consensus 180 ~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 180 LRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred ecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1111 1346778888999999999888754332211000 00 00011 244566677789999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
..+.+. .-... .. ... .....+..+++++.++.+..+|..+++.+-+....... ....... .+..|+
T Consensus 258 ~~tG~~--~W~~~----~~-~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~--~~ssp~i--~g~~l~ 324 (377)
T TIGR03300 258 LRSGRV--LWKRD----AS-SYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR--QLTAPAV--VGGYLV 324 (377)
T ss_pred CCCCcE--EEeec----cC-Ccc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC--ccccCEE--ECCEEE
Confidence 875421 11111 10 111 12235677888888999999999999765443221111 1111112 367899
Q ss_pred EEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
+++.+|.|+++|..+++.....+.
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEc
Confidence 999999999999999988777654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-08 Score=81.01 Aligned_cols=242 Identities=15% Similarity=0.186 Sum_probs=137.9
Q ss_pred ccEEEEEEC---CCCC-EEEEecCCCeEEEEEccCCcceeeeec---ccccce---EEEEecCCCeeEEeecCCCCeEEE
Q psy16316 22 DKITSIDYS---ADGL-LLISCSEDDQIVIYDCELGTNKRTVFS---KKYGVD---LIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 22 ~~V~~v~~s---~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..++.+.|. -+|. .|+-+-.+|.|.++..+-.+....+.+ .+..+. .+.|...+.. ++++-.++.+.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~--i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK--IFVSDSRGSISG 147 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce--EEEEcCCCcEEE
Confidence 334555554 2444 567777889999997654433322222 122222 2344444333 444445666665
Q ss_pred EEcCCCce--EeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCC-cee---EEEecCCcceEEECCCCCEEE
Q psy16316 92 LSLHDNKY--IRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPN-CQG---IMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 92 ~~~~~~~~--~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~ 164 (335)
.+...... ++.+++|.-.++-+.|+.. .+.+.|||.|+.+..||+|.+. ++. ..|..+...+..-.|.+.+++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 55544433 3478999999999999865 4689999999999999999433 321 234555555556667889999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC--EEEEEeCCCeEEEEECCCCeee--eeecccccCC
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK--YILISTNGSIIRTFDAYNGQCL--QTLAGFLNNK 240 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~ 240 (335)
+|+.|..+++||.|++.+ |...- .....|..+..+|.-. .+++....| .++.+....... ..+..+..|.
T Consensus 228 TGsYDe~i~~~DtRnm~k-Pl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGK-PLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred EeccccceeeeehhcccC-ccccC----ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccc
Confidence 999999999999997542 33211 1123455677777533 333333333 344444432211 1122222232
Q ss_pred CCceEEEEcCCCcEEEEEe-CCCcEE-EEECCC
Q psy16316 241 GCPLEASFTPDSKYVISGS-TDGRIH-IWNAEK 271 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs-~dg~v~-iwd~~~ 271 (335)
+-...-.|.....+|||++ .|+.++ +|-..+
T Consensus 302 Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceeeccccccccceeeeeeccccceeeeeeecc
Confidence 2222234433335688876 366644 665443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=64.23 Aligned_cols=38 Identities=45% Similarity=0.804 Sum_probs=36.2
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEee
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd 135 (335)
++++.+++|.+.|++++|+|++++|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-07 Score=78.56 Aligned_cols=270 Identities=12% Similarity=0.170 Sum_probs=167.5
Q ss_pred cEEEEEECCCCCEEEEecCCC---------------eEEEEEccCCcceeeeeccccc---ceEEEEecCCCeeEEeecC
Q psy16316 23 KITSIDYSADGLLLISCSEDD---------------QIVIYDCELGTNKRTVFSKKYG---VDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg---------------~i~lwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 84 (335)
.|.-+.|||+|+||.|=+... .+.+||+.+|..+..+...... -..+.|+.+........
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-- 150 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-- 150 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--
Confidence 378899999999999877644 4999999999877665544333 23667776655433222
Q ss_pred CCCeEEEEEcCCCceEeeecCC---CCCeEEEEECCCC--CEEEE-----eeCCCcEEEeecCCCCceeEEEe-cCCcce
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGH---TKKVNSLCLSPID--DTFIS-----GSYDKTVRLWDLRSPNCQGIMHV-SGSRPI 153 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H---~~~V~~~~~~~~~--~~l~s-----~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~ 153 (335)
...+.++++ +.... ..+.| ...|....++|.+ ..|+. .+.++++++|.+..+..+..... ......
T Consensus 151 -~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 151 -GSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred -cCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 456778886 33221 11112 2567778888864 33443 67789999999886655433221 222234
Q ss_pred EEECCCCCEEEEEEc-----------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEE
Q psy16316 154 AAFDPEGLIFGVGVN-----------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIR 220 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~ 220 (335)
..|++.|.++.+-.. ...+.|+++.... +....+...+|...+|.|+++.+++.+ ....+.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccc------cceeccccccceeeeecccCCceeEEeccccccee
Confidence 567777776543211 1346666665211 111113345677899999998877654 456788
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC---CcEEEEECCCCeeEE-EeCCCCCCCeEEEEeCCCCc
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD---GRIHIWNAEKGFKVC-VLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd~~~~~~~~-~~~~~h~~~v~~v~~sp~~~ 296 (335)
++|++..-.... ..... ..+.|+|.+++++.++-| |.+.+|+....+++. .+.. .-..-+.|+|+++
T Consensus 302 ~~~lr~Nl~~~~---Pe~~r---NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---~n~s~~~wspd~q 372 (561)
T COG5354 302 VFDLRGNLRFYF---PEQKR---NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---LNTSYCDWSPDGQ 372 (561)
T ss_pred ecccccceEEec---CCccc---ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec---CCceEeeccCCce
Confidence 999886622111 11122 237899999999987754 789999998777665 3332 1234568999999
Q ss_pred EEEeee--------ceeEEecccc
Q psy16316 297 MMASAC--------TNLAFWIPTY 312 (335)
Q Consensus 297 ~~~s~~--------~~~~~w~~~~ 312 (335)
++-++. ..+.+|....
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEecCCCcccccCcceEEEEecC
Confidence 876552 2367775533
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-07 Score=89.18 Aligned_cols=237 Identities=14% Similarity=0.146 Sum_probs=143.8
Q ss_pred EEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC--------------CCCCeEEEEECCCCCEE-EEeeCCCcEEE
Q psy16316 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG--------------HTKKVNSLCLSPIDDTF-ISGSYDKTVRL 133 (335)
Q Consensus 69 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--------------H~~~V~~~~~~~~~~~l-~s~s~D~~i~v 133 (335)
+++.+.... ++.+....+.|+++|.... .+..+.+ +-..-..+++.++++.| ++-...+.|++
T Consensus 573 vavd~~~g~-lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNR-LFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred EEEECCCCe-EEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 444443333 3444445788999997644 3333322 11235788999887754 55556688999
Q ss_pred eecCCCCceeEEEe-------c----------CCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEec----
Q psy16316 134 WDLRSPNCQGIMHV-------S----------GSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA---- 191 (335)
Q Consensus 134 Wd~~~~~~~~~~~~-------~----------~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~---- 191 (335)
+|+.++....+... . ..-..++++| ++.++++.+.++.|.+||..... ...+...
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGDGYER 727 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecCCccc
Confidence 99876543221110 0 0012367888 67778888888999999986421 1111000
Q ss_pred --c------CCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeeeeeecc----------cc--------cCCCCce
Q psy16316 192 --A------EKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAG----------FL--------NNKGCPL 244 (335)
Q Consensus 192 --~------~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~----------~~--------~~~~~v~ 244 (335)
. ..-....+++++|++..|+++ +.++.|++||+.++.......+ .. ..-..+.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0 000123579999999866554 5568899999987643111000 00 0112356
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------CCCCeEEEEeCCCCcEEEeeec--eeEEecc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNPKFNMMASACT--NLAFWIP 310 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------h~~~v~~v~~sp~~~~~~s~~~--~~~~w~~ 310 (335)
.++++|+|.++++-+.+++|++||..++........+ .-.....++++|+|.++++... .|++|.+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 8999999999999999999999999876544332211 1124568999999998777654 4777754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-06 Score=79.78 Aligned_cols=210 Identities=14% Similarity=0.081 Sum_probs=125.2
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCE-EEEeeCC---CcEEEeecCCCCceeEEEecCCcceEEECCCCCEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYD---KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
.+.+-|.+.........+ +.+..-.|+|+|+. ++..+.+ ..|.++|+.+++...+....+......|+|||+.+
T Consensus 170 ~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred eEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 444444444433333333 36778999999984 6544443 56888899887766554444444456799999766
Q ss_pred EEE-EcC--CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C--eEEEEECCCCeeeeeecccc
Q psy16316 164 GVG-VNS--DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S--IIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 164 ~~~-~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~--~i~i~d~~~~~~~~~~~~~~ 237 (335)
+.. ..+ ..|.++|+.... ...+... ........|+|||+.++..++. + .|+++|+.+++..+....
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~---~~~LT~~---~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-- 319 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKT---LTQITNY---PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-- 319 (419)
T ss_pred EEEEccCCCcEEEEEECCCCc---EEEcccC---CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--
Confidence 543 333 457777765422 2222111 1111235799999988876643 2 588888887765332221
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCC---------CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---cee
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTD---------GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNL 305 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~d---------g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~ 305 (335)
.. . ...|||||++|+-.+.. ..|.+.|+..+.... +... +.....+|+|+|.+++... +..
T Consensus 320 g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 320 GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN--GVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC--CCcCCeEECCCCCEEEEEEccCCcE
Confidence 11 1 24899999988776654 267888887775433 3221 2334689999999877553 334
Q ss_pred EEecccccc
Q psy16316 306 AFWIPTYLS 314 (335)
Q Consensus 306 ~~w~~~~~~ 314 (335)
.++..+..-
T Consensus 393 ~L~~~~l~g 401 (419)
T PRK04043 393 ALGIIRLNY 401 (419)
T ss_pred EEEEEecCC
Confidence 555554433
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-09 Score=103.18 Aligned_cols=198 Identities=14% Similarity=0.240 Sum_probs=143.4
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.+.|-..|.++.=+|.-.+-+||+.||.+++|....+..+-.+.. ....+..++|...++..-++ ..||.+-+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~--d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV--DGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee--ccCCceeecccC
Confidence 345566678888889999999999999999999877766554432 23567778887766544333 358999999887
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEee---CCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCC
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGS---YDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s---~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
.++....+-|+.......|-. ..+++++ .++.+.+||..-......+ -+.+..+++++-|..+++.+|+.+|
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred -CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 556667788999988888876 5666654 5789999997643322222 2344567888999999999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
.|++||++..+.. .. +. +++ ...+++.++..|.++||++.....+..+.
T Consensus 2359 ~v~l~D~rqrql~--h~----------~~--~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLR--HT----------FQ--ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cEEEeehHHHHHH--HH----------hh--hhh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999852210 00 11 133 56688999999999999998766555443
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-08 Score=83.06 Aligned_cols=204 Identities=14% Similarity=0.161 Sum_probs=128.7
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc-----eeEEEe-----cC--------CcceEEECCC--CCEEEEE
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC-----QGIMHV-----SG--------SRPIAAFDPE--GLIFGVG 166 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~-----~~~~~~-----~~--------~~~~~~~~~~--~~~~~~~ 166 (335)
.+-|.++.|..+|.+|+||..+|.|.++.-..... ...++. .. .+.-+.|.++ ...|...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45688999999999999999999999996433221 111110 00 0111233333 3577888
Q ss_pred EcCCeEEEEEccCCCCCc-------------eeeE------------------EeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 167 VNSDTIKLYDVRSFDKGP-------------FSNF------------------KFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~-------------~~~~------------------~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
+.|.++++|.++...... ...+ .....+...++++.++.|+..++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999986532111 0000 0112244567889999999988876 5
Q ss_pred CCeEEEEECCCC-eeeeeec--cc--ccCCCCceEEEEcCC-CcEEEEEeCCCcEEEEECCCCee------EEEeCCC--
Q psy16316 216 GSIIRTFDAYNG-QCLQTLA--GF--LNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKGFK------VCVLDAD-- 281 (335)
Q Consensus 216 ~~~i~i~d~~~~-~~~~~~~--~~--~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~------~~~~~~~-- 281 (335)
|=.|.+|+++-- ++...+. .+ ..-..-|++..|||. ..+++-.|..|+|++.|+..... ....+.+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 667999998632 2222211 10 001123556789995 46788888899999999973221 1111111
Q ss_pred -------CCCCeEEEEeCCCCcEEEeee-ceeEEeccc
Q psy16316 282 -------HPSPVQTIQFNPKFNMMASAC-TNLAFWIPT 311 (335)
Q Consensus 282 -------h~~~v~~v~~sp~~~~~~s~~-~~~~~w~~~ 311 (335)
--..|.++.|+++|.++++-+ .++++|...
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~n 301 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLN 301 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecc
Confidence 113688999999999999999 589999753
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-08 Score=79.66 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=102.2
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEccCCcce--eeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC-CCceEe
Q psy16316 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH-DNKYIR 101 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~ 101 (335)
-++.|++.|..++++-.+|.+.+-+....... +.+..|.+..-...|+... ..++.+++.|+.+..||++ .++.+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcceee
Confidence 47889999999999999999984443322222 2556677777777776543 3678889999999999998 455554
Q ss_pred e-ecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCC-CCceeEEEecCCcceEEECCC--CCEEEEEEcCCeEEEEE
Q psy16316 102 Y-FPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRS-PNCQGIMHVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 102 ~-~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd 176 (335)
. .+-|...|.++.-+|. ...++||++|..|++||.|. ++....-...+.+-.+..+|. +.+++++..+ -.+|.+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~ 282 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN-GAKILD 282 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc-CceEEE
Confidence 3 5679999999998875 57999999999999999984 333322222233333334442 2334444333 345555
Q ss_pred ccC
Q psy16316 177 VRS 179 (335)
Q Consensus 177 ~~~ 179 (335)
+..
T Consensus 283 ~~~ 285 (339)
T KOG0280|consen 283 SSD 285 (339)
T ss_pred ecc
Confidence 543
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=100.91 Aligned_cols=218 Identities=14% Similarity=0.198 Sum_probs=141.9
Q ss_pred EEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe
Q psy16316 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147 (335)
Q Consensus 69 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~ 147 (335)
.++...+....+.+++.|+.+++|.-..+..+..++ +-+..|+.+.|+.+|+.+..+-.||.+.+|.+... .... ..
T Consensus 2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-~~~s-~q 2289 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-PYTS-WQ 2289 (2439)
T ss_pred eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc-ceec-cc
Confidence 345555566678889999999999887777766654 33488999999999999999999999999987621 1100 11
Q ss_pred cCCcceEEECCCCCEEEEE---EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC
Q psy16316 148 SGSRPIAAFDPEGLIFGVG---VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~ 224 (335)
.+.+....|.--+..++++ ++++.+.+||..-........ .-+....+.+++-|....|++|+.+|.|.+||+
T Consensus 2290 chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 1111111111111333443 356789999976432222211 223344578999999999999999999999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+..+...++.. ++ ...++++|+..|+++||++.....+...+..| +-... |...|.++-.+ ..
T Consensus 2366 rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~--ak~gf-Fr~~g~Q~~v~-~~ 2428 (2439)
T KOG1064|consen 2366 RQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH--AKQGF-FRNIGMQINVG-QC 2428 (2439)
T ss_pred HHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchhh--cccch-hhhcCceeeec-cC
Confidence 86554333321 33 45689999999999999998765555555444 22333 55555444333 23
Q ss_pred eEEec
Q psy16316 305 LAFWI 309 (335)
Q Consensus 305 ~~~w~ 309 (335)
-|||+
T Consensus 2429 nrifs 2433 (2439)
T KOG1064|consen 2429 NRIFS 2433 (2439)
T ss_pred ceEEE
Confidence 35553
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-06 Score=75.74 Aligned_cols=230 Identities=13% Similarity=0.031 Sum_probs=133.1
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeE
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVN 111 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~ 111 (335)
.+..++.++.+|.+..+|..+|+................. +.. .+..+..++.+..+|..+++.+-..... +.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGG--LVFVGTEKGEVIALDAEDGKELWRAKLS-SEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCC--EEEEEcCCCEEEEEECCCCcEeeeeccC-ceee
Confidence 3667888889999999999999876654332211111111 122 2233446889999999988876554322 2222
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc------ceEEECCCCCEEEEEEcCCeEEEEEccCCCCCce
Q psy16316 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR------PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185 (335)
Q Consensus 112 ~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~ 185 (335)
+.-.. .+..++.++.|+.+..||.++++........... ..... .+..+..+..++.+..+|.++.+..-.
T Consensus 139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence 11111 2456777788999999999988765443322110 00011 123566777788898888876432100
Q ss_pred eeEEeccCCC-----ccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 186 SNFKFAAEKE-----CDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 186 ~~~~~~~~~~-----~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.......... ..+ ....+ .+..+++++.++.++.+|..+++..-.... .. .. ....++..+..++
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~---~~--~p~~~~~~vyv~~ 286 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SS---YQ--GPAVDDNRLYVTD 286 (377)
T ss_pred eccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CC---cc--CceEeCCEEEEEC
Confidence 0000000000 000 00111 355777788899999999999976554431 11 11 1123467788888
Q ss_pred CCCcEEEEECCCCeeEEEe
Q psy16316 260 TDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~ 278 (335)
.||.++.+|..++......
T Consensus 287 ~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCCeEEEEECCCCcEEEcc
Confidence 9999999999988765543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=7e-07 Score=82.90 Aligned_cols=242 Identities=18% Similarity=0.216 Sum_probs=165.8
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCC----------CeeEEeecCCCCeEEEEE
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK----------QAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~d~~i~~~~ 93 (335)
-.++.|+|+| ++|=|+. ..|.+-|..+-+.+..+..|+..|..++|.|.+ ...+++++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4688999998 4555544 477888988888888888899999999997643 234677888889999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCC---C-CEEEEeeCCCcEEEeecCCCCceeEEEecCCc-ceEEECC-CCCEEEEEE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPI---D-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP-EGLIFGVGV 167 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~---~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 167 (335)
+..+..+..++.|.++|..++|-+. . ..|+.-..-.++.+|+..+|+......-.... .+..++| +...+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 9999888889999999999998753 2 46777777889999999988765433222221 2345555 445666666
Q ss_pred cCCeEEEEEccCC--CCCceeeEEeccCCCc-----------------c--------ceEEEEccCCCEEEEEeCCCeEE
Q psy16316 168 NSDTIKLYDVRSF--DKGPFSNFKFAAEKEC-----------------D--------WTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 168 ~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~-----------------~--------~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
..|.+.+.+.... ...+...++...++.. + ...++|+|.-+-++...--+.+.
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 6677766664321 1122222222111100 0 12367889877777777788899
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCCC--cEEEEEeCCCcEEEEECC
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS--KYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~tgs~dg~v~iwd~~ 270 (335)
++|++-..++..+.- ..+++.-+.+-|++ ..|.++..||++.+|-..
T Consensus 256 v~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 999998877765532 22333346666665 479999999999999643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=73.20 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=116.0
Q ss_pred cceEEEEecCCCe-eEEeecC-CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCC--CcEEEeecCCC
Q psy16316 65 GVDLIRFTHAKQA-AIHASTK-IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYD--KTVRLWDLRSP 139 (335)
Q Consensus 65 ~~~~~~~~~~~~~-~~~~~~~-~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D--~~i~vWd~~~~ 139 (335)
.....+|++++.. .++.+.. ....+.++|+.+++..+... ..+.+....|+|+|+.|+ +.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4556789998875 3333333 35678889998887655443 345566778999997554 44434 56777788777
Q ss_pred CceeEEEecCCcceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 140 NCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
....+....+......|+|+|+.++..++ .+ .|.+.|+.... ...+... .. . ...|+|||+.++.....
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~rlt~~--g~--~-~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQVVFH--GK--N-NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEeCccC--CC--c-CceECCCCCEEEEEEcC
Confidence 65443333322233579999987665543 33 56666665422 2122111 11 1 14799999999876543
Q ss_pred ---------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-Cc--EEEEECC
Q psy16316 217 ---------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-GR--IHIWNAE 270 (335)
Q Consensus 217 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-g~--v~iwd~~ 270 (335)
..|.+.|+.+++. +.+... . ......|+|||+.|+-.+.+ +. +.+.++.
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTAN-G---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCC-C---CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 3688889888754 444332 1 12247899999987665543 23 5556664
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.4e-08 Score=83.60 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=100.1
Q ss_pred EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeE---EEEECCCCeeee
Q psy16316 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSII---RTFDAYNGQCLQ 231 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i---~i~d~~~~~~~~ 231 (335)
..++.+.+++++..+....+++++..... ..+..........+.+.|-.+.....++..-|.+ .+|....+.+..
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKG--AKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCc--ceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 45677888888888888777777653220 1111000111123455665666666655444444 444444444332
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE-EEeeeceeEEecc
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM-MASACTNLAFWIP 310 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~~s~~~~~~~w~~ 310 (335)
+ .+|..-++.++++||+++|+|+..|..|++=.....+-+..+..+|...|..++.-++..+ .++|++++++|+.
T Consensus 147 -~---lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 147 -I---LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -h---hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 2 3455567889999999999999999999998887766666667789999999999998772 3344567899976
Q ss_pred ccc
Q psy16316 311 TYL 313 (335)
Q Consensus 311 ~~~ 313 (335)
.-.
T Consensus 223 ~sg 225 (390)
T KOG3914|consen 223 TSG 225 (390)
T ss_pred ccC
Confidence 433
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=89.15 Aligned_cols=282 Identities=14% Similarity=0.167 Sum_probs=167.0
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-ceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-NKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD- 96 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~- 96 (335)
-.+.+.++..+|.|.-+|.++.-|.. +-|++..- ..+-+.. ....+..+.|++......-+.........+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 35668899999999999999887765 44554432 2222211 22346677777655544433333345556777742
Q ss_pred --CceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCcee-EE-EecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 97 --NKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQG-IM-HVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 97 --~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
...-..+.||...|+.+-|+|+. ..|++++.|-.+..||+++..... .. ......+-++|+.-...+.+.+..+-
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 33445678999999999999986 589999999999999999875432 22 12223345566654434445567789
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
+.+||.+.. +.+...++. +...++.++|..- ...+.+.+.|++|+.||-.+....... .......+..-.+-|
T Consensus 182 i~vwd~r~g-s~pl~s~K~---~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 182 IFVWDLRKG-STPLCSLKG---HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--TVTTNFPIWRGRYLP 255 (1081)
T ss_pred eEEEeccCC-CcceEEecc---cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--eccccCcceeccccc
Confidence 999999864 334433332 4444556666542 345667788999999997654322111 111223344445555
Q ss_pred CCcEEEE-Ee-CCCcEEE---------EECCCC-eeEEEeCCCCCCCeEEEEeCCCCc----------EEEee--eceeE
Q psy16316 251 DSKYVIS-GS-TDGRIHI---------WNAEKG-FKVCVLDADHPSPVQTIQFNPKFN----------MMASA--CTNLA 306 (335)
Q Consensus 251 ~~~~l~t-gs-~dg~v~i---------wd~~~~-~~~~~~~~~h~~~v~~v~~sp~~~----------~~~s~--~~~~~ 306 (335)
-|.-... -. .+..+.+ |+.-++ ..+..+ .+|.+.|...-|...+. +|++= +.+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 4431111 11 1113333 333333 334444 57988887777765433 34543 46789
Q ss_pred Eec
Q psy16316 307 FWI 309 (335)
Q Consensus 307 ~w~ 309 (335)
+|-
T Consensus 335 lWp 337 (1081)
T KOG0309|consen 335 LWP 337 (1081)
T ss_pred eee
Confidence 983
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-09 Score=99.08 Aligned_cols=222 Identities=18% Similarity=0.232 Sum_probs=152.8
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
..|+.-++|+.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|........|..+++.+.-+.++...+..++...-.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 46888899999999999999999999999999999999999999999888888988888877666666666555555557
Q ss_pred EEEEEcCC-CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-----EecCCcceEEECCCCCE
Q psy16316 89 VRYLSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-----HVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 89 i~~~~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 162 (335)
..+|++.+ +.....|. .-.++.|+..-..-+-|..-....++|+.++.....+ .......++.|+|+..+
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 78898864 34444443 3356777765433333333355789999987654332 23344567889998887
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+. .|| -+||+|..+. ...+... ...-.-.|+|+|..++..+ -|||+++.+.+..+... .
T Consensus 1245 Il---ndG--vLWDvR~~~a--Ih~FD~f----t~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L---d-- 1303 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEA--IHRFDQF----TDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL---D-- 1303 (1516)
T ss_pred Ee---eCc--eeeeeccHHH--Hhhhhhh----eecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc---c--
Confidence 76 445 4799986421 1111100 0112246999999998876 48999988765544221 1
Q ss_pred ceEEEEcCCCcEE
Q psy16316 243 PLEASFTPDSKYV 255 (335)
Q Consensus 243 v~~~~~sp~~~~l 255 (335)
-..+.|...|..+
T Consensus 1304 qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVM 1316 (1516)
T ss_pred ceEEEeccCccch
Confidence 1246777777654
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=81.44 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=99.7
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc----eeEEEecCCcceEEECCCCCEEEEE---EcCCeEEEEEccCCC
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC----QGIMHVSGSRPIAAFDPEGLIFGVG---VNSDTIKLYDVRSFD 181 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~v~iwd~~~~~ 181 (335)
....+..++.+++|+.+..++...++|...... ............+.+..+.....++ ++...+.+|.....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 344556677788888888888877777754322 1111111111122222222222222 23333444433221
Q ss_pred CCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC
Q psy16316 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261 (335)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d 261 (335)
+ .....++..-+..++++||++.++++..|..||+-....-..+..+ ..+|..+|..++.-++ ..|++||.|
T Consensus 143 --~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 143 --R---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred --C---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeeccC-ceeeecCCC
Confidence 1 1122345556678999999999999999999999876654433333 2457778888888775 569999999
Q ss_pred CcEEEEECCCCeeEEEe
Q psy16316 262 GRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 262 g~v~iwd~~~~~~~~~~ 278 (335)
++|++||..+|..+..+
T Consensus 215 ~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTC 231 (390)
T ss_pred CcEEEEecccCCccccc
Confidence 99999999998776554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-06 Score=74.85 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=168.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec-------
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST------- 83 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 83 (335)
+.+...+....-++..+.|||.|.+|++.-.. .|.+|+......+..+ ....|..+.|+|.......-+.
T Consensus 22 ~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 22 EVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred ccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ecCCceecccCcccceeeeeccCCccChh
Confidence 44445555567789999999999999988665 5789988766533322 2334566666665443322111
Q ss_pred ------CCCCeEEEEEcCCCceEeeecCCCCC--eE-EEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EEEe--cCCc
Q psy16316 84 ------KIDDTVRYLSLHDNKYIRYFPGHTKK--VN-SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IMHV--SGSR 151 (335)
Q Consensus 84 ------~~d~~i~~~~~~~~~~~~~~~~H~~~--V~-~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~~~--~~~~ 151 (335)
..++.+.+||..++..+..+.+-..+ .+ -+.|+-++.+++-- ....+.+.++ ++.... -++. ....
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 12346899999999999998877666 55 67888888776655 3456899997 333211 0100 0112
Q ss_pred ceEEECCCCC--EEEE-----EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---------
Q psy16316 152 PIAAFDPEGL--IFGV-----GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN--------- 215 (335)
Q Consensus 152 ~~~~~~~~~~--~~~~-----~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--------- 215 (335)
.-..++|.++ .++. .....++++|.+.... ......+..-.. ..+.|.+.|+++++-..
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~---~qLkW~~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSG---VQLKWQVLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecc---cEEEEecCCceEEEEEEEeeecccce
Confidence 2234555532 2222 2355688888876322 111111111111 35889999998764321
Q ss_pred --CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe--CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 216 --GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS--TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 216 --~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
...++++++....+ .......+.|...+|.|.++.+++.+ .+-.+.++|+... ...-+ .+.+-+.+-|
T Consensus 252 fgesnLyl~~~~e~~i----~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~f 323 (561)
T COG5354 252 FGESNLYLLRITERSI----PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFF 323 (561)
T ss_pred eccceEEEEeeccccc----ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccc
Confidence 13466777663322 11123456788899999998776665 5778889988655 22222 3445567778
Q ss_pred CCCCcEEEeee-----ceeEEec
Q psy16316 292 NPKFNMMASAC-----TNLAFWI 309 (335)
Q Consensus 292 sp~~~~~~s~~-----~~~~~w~ 309 (335)
+|.+++++.++ +++.+|.
T Consensus 324 sp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred cCcccEEEEecCCccccceEEec
Confidence 88877766653 4566664
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-06 Score=70.78 Aligned_cols=192 Identities=10% Similarity=0.075 Sum_probs=115.7
Q ss_pred CEEEEeeCCCcEEEeecCCCCceeEE-E-ecCCcceE-EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 120 DTFISGSYDKTVRLWDLRSPNCQGIM-H-VSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 120 ~~l~s~s~D~~i~vWd~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
..|+.|+.-|...+|...+.+..... . ....+.+. ......--+..++.|++++++++.....+ ...... ..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~---~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQ---NL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeecc---cc
Confidence 47899999999999998865532211 1 11111111 00011122445778899999988642211 111111 12
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee-
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK- 274 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~- 274 (335)
....+.+++|++++++-++.+.|-.|.+.... .+..... ......-.+.+|+.....+|++..||++.|||+..-..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 35778999999999999888899999886532 2222111 11222335688999999999999999999999864321
Q ss_pred EEE---eCCCCCCCeEEEEeCCCCcE---EEeee-ceeEEeccccccccc
Q psy16316 275 VCV---LDADHPSPVQTIQFNPKFNM---MASAC-TNLAFWIPTYLSNHQ 317 (335)
Q Consensus 275 ~~~---~~~~h~~~v~~v~~sp~~~~---~~s~~-~~~~~w~~~~~~~~~ 317 (335)
+.. ....|.+++..+.|+|.|.+ +.|-. +.+.+-..+.-.++|
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 111 12348899999999997752 33332 344444444444443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-05 Score=65.47 Aligned_cols=206 Identities=15% Similarity=0.200 Sum_probs=124.0
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEEC-CCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CC-----c
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS-PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GS-----R 151 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~-~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~-----~ 151 (335)
++.+....+.|..|+..++.... +.. .....+.+. +++. |+.+..++ +.++|..+++........ .. .
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEV-IDL--PGPNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEE-EES--SSEEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEE-Eec--CCCceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCC
Confidence 34444456788888887775533 221 126777887 5654 44444544 455599887665555432 11 1
Q ss_pred ceEEECCCCCEEEEEEcC--------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-EeCCCeEEEE
Q psy16316 152 PIAAFDPEGLIFGVGVNS--------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTF 222 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~~~~i~i~ 222 (335)
.-++++++|+++++.... +.+..++.. ....... ..-...++++|+|+++.|++ -+..+.|..|
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~---~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVA---DGLGFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEE---EEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEe---cCcccccceEECCcchheeecccccceeEEE
Confidence 246789999988876644 335555543 1111111 11122378999999998765 5567789999
Q ss_pred ECCCCee-e---eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe-CCCCcE
Q psy16316 223 DAYNGQC-L---QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF-NPKFNM 297 (335)
Q Consensus 223 d~~~~~~-~---~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~-sp~~~~ 297 (335)
++..... + +.+.......+.+-.++++++|++.++.-..+.|.+++.. |.....+... ...+++++| -|+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~ 239 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKT 239 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSE
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCE
Confidence 8853221 1 2222222222346779999999999988889999999987 8777766554 348899999 466544
Q ss_pred E
Q psy16316 298 M 298 (335)
Q Consensus 298 ~ 298 (335)
|
T Consensus 240 L 240 (246)
T PF08450_consen 240 L 240 (246)
T ss_dssp E
T ss_pred E
Confidence 3
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-08 Score=81.70 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=116.3
Q ss_pred EEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEE
Q psy16316 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201 (335)
Q Consensus 122 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (335)
-++.+.+-.|-+-|+.++..+... ....+-...|...++++..|..+|.|..+|+|....+..... ...-+...++++
T Consensus 227 hfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSL 304 (425)
T ss_pred eecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhhh
Confidence 366777788888888877655433 222233344666678999999999999999986432211110 011123344555
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCCCee---eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE
Q psy16316 202 KFSA-DGKYILISTNGSIIRTFDAYNGQC---LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 202 ~~s~-~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~ 277 (335)
..-. ++.+|++++-+++|++||.+--++ +...++|.+.... .-+-..|....++++++|+..|||.+..+..+..
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~-l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY-LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc-cccccccccceEEEccCeeEEEEEecccCceeec
Confidence 5444 678888888899999999998777 7788888766543 3456677788999999999999999999998887
Q ss_pred eCCCC---CCCeEEEEeCC
Q psy16316 278 LDADH---PSPVQTIQFNP 293 (335)
Q Consensus 278 ~~~~h---~~~v~~v~~sp 293 (335)
++... ..-++.++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 75432 22456677754
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-08 Score=89.06 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=112.0
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-------ceeEE-EecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-------CQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
+..+.||+..|..++--.+.+-++++|.|++|++|.++... |+..+ .+...+..+.|-.+.++++ +.|+-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCc
Confidence 45678999999999887778899999999999999997532 33333 1222333344445555544 55889
Q ss_pred EEEEEccCCCCCceeeEEec--cCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeeeeeeccc--ccCCCCceEE
Q psy16316 172 IKLYDVRSFDKGPFSNFKFA--AEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGF--LNNKGCPLEA 246 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~ 246 (335)
+++||.-.. .+..+.... ......+.++. +.+...++++ +...+|+++|.+.++...+++.. ......+.++
T Consensus 806 iHlWDPFig--r~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIG--RLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeeccccc--chhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 999996432 122211111 11112222221 2233444444 66788999999988766555432 3344556789
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
+.-|.|+.+|.|=.+|+|.+.|..+|..+
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 99999999999999999999999887643
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-07 Score=83.91 Aligned_cols=243 Identities=10% Similarity=0.050 Sum_probs=147.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+...+++.||.+.|..+.|+.+.+.|.|...+|.|.+|-+-.|.-......
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN----------------------------- 111 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN----------------------------- 111 (1189)
T ss_pred cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh-----------------------------
Confidence 445578999999999999999999999999999999998755532111000
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCC
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
.-.++.|.+++|+.+|..+.-.-.||.|.+=.+...+.-..-.......-+.|++|...+..+-..|
T Consensus 112 -------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang 178 (1189)
T KOG2041|consen 112 -------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG 178 (1189)
T ss_pred -------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence 0123556788888888887777777777655544332111000001112346788877776777788
Q ss_pred eEEEEEccCC-----CCCceeeEE-eccCCCccceEEE--------EccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 171 TIKLYDVRSF-----DKGPFSNFK-FAAEKECDWTGIK--------FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 171 ~v~iwd~~~~-----~~~~~~~~~-~~~~~~~~~~~~~--------~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
.++++|.... +....-+.. ........+.++. .-||.+.|+++-..|.+.+...++-.....+...
T Consensus 179 e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg 258 (1189)
T KOG2041|consen 179 ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG 258 (1189)
T ss_pred cEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc
Confidence 9999986431 000000000 0000000111222 2368889999988888888766554332222211
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCC---------cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDG---------RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg---------~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
-.+..+.|+|+|..||.+|.|. .|.++.. -|.....+.. ....|+.++|-..|..+|-+
T Consensus 259 ----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkv-pg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 259 ----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKV-PGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred ----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEec-CCceeeeeEEcCCceEEEEE
Confidence 1245678999999999998653 3555543 3444444432 44678999998888766654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-05 Score=67.60 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=127.5
Q ss_pred CCCeEEEEEccCCcceeeeecccccceEEE-EecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC
Q psy16316 41 EDDQIVIYDCELGTNKRTVFSKKYGVDLIR-FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 41 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~ 119 (335)
++|+|..||..+|+.+.........-..+. ........+++ ..++.+..+|..+++.+-.+.. ...+.... ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVA--SGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEE--ETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEE--cCCCEEEEEECCCCCEEEEeec-ccccccee-eecc
Confidence 478999999999988776543211111111 22223333333 3689999999999988765553 22221111 2234
Q ss_pred CEEEEeeCCCcEEEeecCCCCceeEE-EecC----CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCC
Q psy16316 120 DTFISGSYDKTVRLWDLRSPNCQGIM-HVSG----SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 120 ~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
..++.++.|+.++.+|..+++..... .... ..........+..++++..++.+..+|+++.. ..-........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~--~~w~~~~~~~~ 154 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK--LLWKYPVGEPR 154 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE--EEEEEESSTT-
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc--EEEEeecCCCC
Confidence 56677778899999999999877653 2221 11111222237777888888999999987642 22222221111
Q ss_pred -Ccc------ceEEEEccCCCEEEEEeCCC-eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEE
Q psy16316 195 -ECD------WTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHI 266 (335)
Q Consensus 195 -~~~------~~~~~~s~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~i 266 (335)
... ..+-....++ .+..++.++ .+.+ |..+++..-+.. ...+. ....+++..|+.++.++.|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~~~-~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISGIY-SLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS-EC-ECEECCCTEEEEEETTTEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCCcc-CCceeeCCEEEEEeCCCEEEE
Confidence 011 1111222244 566666565 4666 999998542211 11111 224567788888889999999
Q ss_pred EECCCCeeEE
Q psy16316 267 WNAEKGFKVC 276 (335)
Q Consensus 267 wd~~~~~~~~ 276 (335)
||..+++...
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999997654
|
... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-05 Score=76.29 Aligned_cols=198 Identities=15% Similarity=0.223 Sum_probs=132.4
Q ss_pred CCCCeEEEEECCCCCEEEEeeCCCcEEEe----ecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccC--
Q psy16316 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLW----DLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-- 179 (335)
Q Consensus 106 H~~~V~~~~~~~~~~~l~s~s~D~~i~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-- 179 (335)
..+.|.++.+.++...++.+..+|.|-+. |........+-.....+.+++|+||+.+++..+.++++.+..-.-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 35789999999999999999999999999 666665555556777788999999999999999888887754210
Q ss_pred ----------C-CCC--------ceeeEEecc---------C------------CCccceEEEEccCCCEEEEEeC----
Q psy16316 180 ----------F-DKG--------PFSNFKFAA---------E------------KECDWTGIKFSADGKYILISTN---- 215 (335)
Q Consensus 180 ----------~-~~~--------~~~~~~~~~---------~------------~~~~~~~~~~s~~~~~l~~~~~---- 215 (335)
. ... .-.+++-.. + ....-..++|-.||.++|+++-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 0 000 000100000 0 0011245889999999998763
Q ss_pred C--CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC---CCcEEEEECCCCeeEEE--eCC-CCCCCeE
Q psy16316 216 G--SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST---DGRIHIWNAEKGFKVCV--LDA-DHPSPVQ 287 (335)
Q Consensus 216 ~--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~---dg~v~iwd~~~~~~~~~--~~~-~h~~~v~ 287 (335)
+ +.+|+|+-+ |.....-+...+- --.++|-|.|.+||+.-. .-.|.+|+-+ |.+-.. ++. .....|.
T Consensus 234 ~~~R~iRVy~Re-G~L~stSE~v~gL---e~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 234 GSRRVIRVYSRE-GELQSTSEPVDGL---EGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred CceeEEEEECCC-ceEEeccccCCCc---cCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceee
Confidence 3 679999865 5443332211111 224899999999999875 3457888753 433322 221 2456899
Q ss_pred EEEeCCCCcEEEeeec-eeEEe
Q psy16316 288 TIQFNPKFNMMASACT-NLAFW 308 (335)
Q Consensus 288 ~v~~sp~~~~~~s~~~-~~~~w 308 (335)
.++|++++.+||.... .+.+|
T Consensus 309 ~l~Wn~ds~iLAv~~~~~vqLW 330 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDRVQLW 330 (928)
T ss_pred EEEECCCCCEEEEEecCCceEE
Confidence 9999999999998754 46666
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-08 Score=84.15 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=155.3
Q ss_pred eEEeecCCCCeEEEEEcCC---CceEeeecCCCCCeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEEEecCCcce
Q psy16316 78 AIHASTKIDDTVRYLSLHD---NKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSGSRPI 153 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~---~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~~~~~ 153 (335)
.+..+++.|+.++.|.... -+.++.++.|...|.+++.+-++.++.|.+. |+.+|++|+.....+..+.....-..
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 4566777899999998654 2456677899999999999999999999887 99999999987655433332221111
Q ss_pred E-EECCCC----CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC-C
Q psy16316 154 A-AFDPEG----LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN-G 227 (335)
Q Consensus 154 ~-~~~~~~----~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-~ 227 (335)
+ .+...| .+.++.-.++.+.++|-+.... ....+..-+..++..+.+.|.+..+++....|.|..|..+. .
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~---q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC---QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF 177 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcC---ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcc
Confidence 2 222223 3334445678999999764221 11222333456778899999999999998899999999872 2
Q ss_pred eee-----------eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC----------------
Q psy16316 228 QCL-----------QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA---------------- 280 (335)
Q Consensus 228 ~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~---------------- 280 (335)
+.. ..+.+.......+.++.|+|++..+.+-+.|.+|++++..++..++.++.
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 111 12223344556678899999999999999999999999877654333211
Q ss_pred ---------------CCC-CCeEEEEeCCCCcEEEeee-ceeEEecc
Q psy16316 281 ---------------DHP-SPVQTIQFNPKFNMMASAC-TNLAFWIP 310 (335)
Q Consensus 281 ---------------~h~-~~v~~v~~sp~~~~~~s~~-~~~~~w~~ 310 (335)
.|. ..-+...|...+++|..+. -.|++-++
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~ 304 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINL 304 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEe
Confidence 011 1234567888889988885 34454443
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-07 Score=84.75 Aligned_cols=187 Identities=16% Similarity=0.237 Sum_probs=131.5
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeE
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVN 111 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~ 111 (335)
++..++-|+--..+...|+.+.+..+.......++...+. +...+..|...|+|-+-|+.+.+.+.++.+|++.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 4556777887778888999888776655444445555553 223455666789999999999999999999999998
Q ss_pred EEEECCCCCEEEEeeC---------CCcEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEEcCCeEEEEEccCCC
Q psy16316 112 SLCLSPIDDTFISGSY---------DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGVNSDTIKLYDVRSFD 181 (335)
Q Consensus 112 ~~~~~~~~~~l~s~s~---------D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~ 181 (335)
.++. +|+.|+|||. |..|+|||+|.-+.+.-+........+.|.|. ...+++++..|...+.|.....
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 7665 6789999886 55679999997665443333333345566664 3567788888999999844322
Q ss_pred CCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
..+.. ..........++++.+|+++..++.+...+.|.+|--.
T Consensus 300 NP~~~-~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 300 NPPAG-VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCccc-eeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 11111 11112222336889999999999999999999999743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-05 Score=69.00 Aligned_cols=215 Identities=16% Similarity=0.190 Sum_probs=137.9
Q ss_pred CCCCCEEEEecCCCeEEEEEccCCcceeeeec------cccc--ceEEE----EecC-CCeeEEeecCCCCeEEEEEcCC
Q psy16316 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFS------KKYG--VDLIR----FTHA-KQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 30 s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~------~~~~--~~~~~----~~~~-~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
+.||+.++- +..|.|.+||.++....+--.+ .+.+ +.... |+.. ++...+.+ -+.+.+.+...
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS---RGkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS---RGKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe---cCcEEEECCCC
Confidence 568875442 3458899999987654321100 0000 11111 2211 12222222 24444545444
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCC-cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK-TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
+-.++. +|...|.=..+..+++-++-|..|| .+-++|.+++........-+.+..+..+++|+.++++.+...+-+.
T Consensus 351 ~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 444433 6778888888888888899999999 9999999988766655555667778899999999999888888888
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC----eEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS----IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|+.+.... .. ......-+..++|||+++++|.+-.++ .|+++|+.+++....-. . ...-.+-+|.||
T Consensus 429 didngnv~---~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~---ta~DfsPaFD~d 499 (668)
T COG4946 429 DIDNGNVR---LI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P---TAYDFSPAFDPD 499 (668)
T ss_pred EecCCCee---Ee--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C---cccccCcccCCC
Confidence 98764311 11 112234567899999999999887664 59999999987654322 1 122235689999
Q ss_pred CcEEEEEe
Q psy16316 252 SKYVISGS 259 (335)
Q Consensus 252 ~~~l~tgs 259 (335)
+++|.--|
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 98765433
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=78.87 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=105.2
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-----CceeEEEecCCcc
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-----NCQGIMHVSGSRP 152 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-----~~~~~~~~~~~~~ 152 (335)
..+++.+.+..+-+-|++++.. +.|. -.+.|.++.|+..++++..|...|.|-..|++.. .+...+-+...++
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVT 302 (425)
T ss_pred eeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchh
Confidence 4445666778888888887642 2233 4678999999999999999999999999999864 2333333333333
Q ss_pred e-EEECCCCCEEEEEEcCCeEEEEEccCCCCC-ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 153 I-AAFDPEGLIFGVGVNSDTIKLYDVRSFDKG-PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 153 ~-~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
. ..+.-++.++.+.+.+++|++||+|..+.+ ...++.-+.. ......+-+.+.+..++++++|...|+|.++.+..+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN-~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN-LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc-cccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 3 344446777778888999999999975432 1222211111 111223445677888899999999999999999887
Q ss_pred eeec
Q psy16316 231 QTLA 234 (335)
Q Consensus 231 ~~~~ 234 (335)
.++.
T Consensus 382 ~tip 385 (425)
T KOG2695|consen 382 CTIP 385 (425)
T ss_pred eccC
Confidence 7654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-05 Score=67.42 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=103.9
Q ss_pred cCCccEEEEEECCCCCEEEEecCCC-eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDD-QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+|.+.|.-..+..++.-++-|..|| .+-|+|.++++..+ +...-..+..+..++++...++ +-....+-++|++++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vv--aNdr~el~vididng 433 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVV--ANDRFELWVIDIDNG 433 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEE--EcCceEEEEEEecCC
Confidence 7888899999999999999999999 99999999887543 3344455677777776554333 334456677788988
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
+....-+..-+-|+...|||++++++-+--+ ..|+++|+..++...+......--.-+|+|+++++-
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 7665555556789999999999999987555 467999998876554443333333456888887653
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-05 Score=70.81 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=156.2
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC---------CCeEEEEEcC
Q psy16316 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI---------DDTVRYLSLH 95 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~~~~~~ 95 (335)
+.+.|||-|.||+|-=.-| |.+|=.++-..++.+ ....+.-+.|+|.....+..+.-. ...+.+||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5799999999999986665 678954432222221 123466677777766666554321 2578999999
Q ss_pred CCceEeeecC--CCCCeEE-EEECCCCCEEEEeeCCCcEEEeecCCCCcee--EEEecCCcceEEECCCCCEEEEEEc--
Q psy16316 96 DNKYIRYFPG--HTKKVNS-LCLSPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVN-- 168 (335)
Q Consensus 96 ~~~~~~~~~~--H~~~V~~-~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (335)
+|...+.+.. -...++. ..|+-++.+++.-.. .+|.|++..+..... .+...+ +.-..|+|.++++|--+.
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g-Ir~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG-IRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCcc-ccCcccCCCcceEEEEcccc
Confidence 9998887765 2333443 479999998887766 568899866532211 111112 233467787777664321
Q ss_pred C---CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-------C---eEEEEECCCCeeeeeecc
Q psy16316 169 S---DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-------S---IIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 169 d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-------~---~i~i~d~~~~~~~~~~~~ 235 (335)
+ ..+.+..+.+.+.....++ ..-.. ..+-|-.+|.+|..-... + .+.|+.++.....-.
T Consensus 369 ~~~parvtL~evPs~~~iRt~nl--fnVsD---ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve--- 440 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNL--FNVSD---CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE--- 440 (698)
T ss_pred cCCcceEEEEecCccceeeeccc--eeeec---cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce---
Confidence 1 1344444443221100000 00001 235566677777654221 1 233444433221100
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCC---CcEEEEECC-CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-----ceeE
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTD---GRIHIWNAE-KGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-----TNLA 306 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-----~~~~ 306 (335)
.......+...+|.|.|..+++-+.+ .++.+|.++ ++.+...+..-.....+.|.|+|.|.+++.+. +++.
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceE
Confidence 11234567788999999877665543 468888876 33332222111234678999999999877653 5677
Q ss_pred Eecccc
Q psy16316 307 FWIPTY 312 (335)
Q Consensus 307 ~w~~~~ 312 (335)
.+..++
T Consensus 521 F~D~~~ 526 (698)
T KOG2314|consen 521 FYDTDY 526 (698)
T ss_pred EEecch
Confidence 776665
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=85.58 Aligned_cols=123 Identities=19% Similarity=0.317 Sum_probs=93.7
Q ss_pred eeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcce-eeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNK-RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.-.+.||+++|+.+.|+|+.. .||+++.|-.+..||+.+.... .....-..+.+.+.|...... +++ .+..+.+++
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vla-sshg~~i~v 184 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLA-SSHGNDIFV 184 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhh-hccCCceEE
Confidence 346789999999999999875 8999999999999999765432 222223345566777654332 222 235678999
Q ss_pred EEcCCC-ceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCC
Q psy16316 92 LSLHDN-KYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 92 ~~~~~~-~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~ 138 (335)
||+..+ .++..+++|...|++++|+.- ...+++++.|++|++||-..
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 999765 567789999999999999864 45799999999999999754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=66.17 Aligned_cols=196 Identities=12% Similarity=0.097 Sum_probs=101.7
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc-------cccceEEEEecCCC-----eeEEeecCCCCeEEE
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFTHAKQ-----AAIHASTKIDDTVRY 91 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~~ 91 (335)
=+-++||||+.+||.+...|+|+++|+.. ..+..+... ...+..+.|..... ..+++. ..+|.++-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NYRGQLRS 123 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE-eccceeee
Confidence 45799999999999999999999999864 333333221 13344455543321 111111 12445554
Q ss_pred EEcCCC-----ceEee--ec-CCCCCeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEEEecCCcceEEECCCCCE
Q psy16316 92 LSLHDN-----KYIRY--FP-GHTKKVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 92 ~~~~~~-----~~~~~--~~-~H~~~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
|-+..+ +.... +. .+...|+++.++|..++|+-||. ...-..+..... -...... +.-.|....
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~-GLtaWRi------L~~~Pyyk~ 196 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSC-GLTAWRI------LSDSPYYKQ 196 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccccc-CceEEEE------cCCCCcEEE
Confidence 443221 11222 22 34779999999999887665553 332111100000 0000110 001111111
Q ss_pred EEEEEcCC------eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 163 FGVGVNSD------TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 163 ~~~~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+ ....++ +..+|.+-+ ...+.........+-.|.+||||..|++..-+|.|.+|++.+.+..+...
T Consensus 197 v-~~~~~~~~~~~~~~~~~~~~~-----~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 197 V-TSSEDDITASSKRRGLLRIPS-----FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred c-cccCccccccccccceeeccc-----eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 1 111111 112222211 00111111223345679999999999999999999999999887665553
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=74.31 Aligned_cols=176 Identities=15% Similarity=0.226 Sum_probs=104.2
Q ss_pred ecCCCCC-eEEEEECCCCCEEEEeeCCCc-----EEEeecCC------CCcee---EEEe-----cCCcceEEECCCCCE
Q psy16316 103 FPGHTKK-VNSLCLSPIDDTFISGSYDKT-----VRLWDLRS------PNCQG---IMHV-----SGSRPIAAFDPEGLI 162 (335)
Q Consensus 103 ~~~H~~~-V~~~~~~~~~~~l~s~s~D~~-----i~vWd~~~------~~~~~---~~~~-----~~~~~~~~~~~~~~~ 162 (335)
+++|... |..+....+.+.|+|.+.|+. +++||+.. ++|.. .+.. ..+.++++++.+-+.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~ 139 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT 139 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence 4445544 444444444578888887765 89999863 33442 2221 223456788888899
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+|+|..+|.|..+.-.-.+.... ..........+++++++..++..++-......|.+|.+.... ..+..+.++...
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~ 216 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNGIS 216 (933)
T ss_pred EEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC--cceeeeccCCcc
Confidence 99999999999987543221111 223334455678999998888873323334568888887333 112222233344
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
..+.+|++....+++++.. .+++|+...-..+..++-+|
T Consensus 217 lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 217 LNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred ceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCC
Confidence 5566777765545555544 49999976433333443344
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00011 Score=61.81 Aligned_cols=215 Identities=14% Similarity=0.077 Sum_probs=121.1
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEE--ECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLC--LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~--~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
++.+..+|..+++.+-...- ........ ..+++..++.++.++.|..||..+++................. .+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV-DGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE-ETTEE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee-ccccc
Confidence 57888899988887765532 11121111 2234667888899999999999998876655543332221122 33445
Q ss_pred EEEEcCCeEEEEEccCCCCCceee-EEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSN-FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
.++..++.+..+|..+.+. .-. .....+............++..++++..++.|..+|+.+|+.+............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 5566778999999776432 222 1111111111122344445888899888999999999999987666442211111
Q ss_pred -------ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 243 -------PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 243 -------v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
...-....++ .+..++.++.+.-+|..++.+..... ...+..+ ..+++..+..++ +.+..|.
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1111222344 66666667764444999998664332 2222231 345666666555 4455553
|
... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.4e-06 Score=72.63 Aligned_cols=255 Identities=16% Similarity=0.133 Sum_probs=153.1
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccC--C-cceeeeecccccceEEEEecCCCeeEEeecCC-CCeEEEEEcC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCEL--G-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-DDTVRYLSLH 95 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~ 95 (335)
|.+.|+.+. ..-..++.++|.||.++.|--.- + +-...+..|...+..++.+. +..+.++... |..++++|++
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEee
Confidence 778787774 34457999999999999997532 1 11112222333333333333 3345555444 8999999887
Q ss_pred CCceEeee--cCCCCCeEEEEECCCC---CEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCCCCEEEEEE
Q psy16316 96 DNKYIRYF--PGHTKKVNSLCLSPID---DTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 96 ~~~~~~~~--~~H~~~V~~~~~~~~~---~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
+-..+.-+ .--.+.+.++ .++.. ..-++.-.++.+.+.|-....|.... .+-..+..+.+.+.+..+++.-
T Consensus 85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 64433111 1112222222 22221 23344446899999998776654322 1222344556777788888888
Q ss_pred cCCeEEEEEccCCCCCceeeEEec----------cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFA----------AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
..|.|.-|.....-+.|.....+. ........++.|+|++..+..-..|..|++++..+++.++.+....
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 889999998763101111111111 1112234679999999999998899999999999887654432100
Q ss_pred -----------------------------cC-CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 238 -----------------------------NN-KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 238 -----------------------------~~-~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
.+ ...-..+.|...+++|+-|+-=| |++.++.++....++.
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 00 01123467999999999998777 9999998887666553
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-07 Score=88.11 Aligned_cols=217 Identities=17% Similarity=0.211 Sum_probs=140.8
Q ss_pred eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC-CC-cEEEee
Q psy16316 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-DK-TVRLWD 135 (335)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~-~i~vWd 135 (335)
++..+....++++|+...+..+ .|...|.++++++.+|.....+..|..+|+-+.-+.+|.++++.+. .. -..+|+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~--vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLA--VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhccccceeeEEeecCCceEE--eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4444566778889987766544 4556899999999999999999999999999998888876665543 33 467999
Q ss_pred cCCC-CceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeE-EeccCCCccceEEEEccCCCEEEEE
Q psy16316 136 LRSP-NCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF-KFAAEKECDWTGIKFSADGKYILIS 213 (335)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~ 213 (335)
+.+- .....+ ..-.++.|+..-+.-+.|+......+||+.+.. +...+ .......-.-+...|+|....++
T Consensus 1174 ~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~--~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCS--PLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred cccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCc--HHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 8752 111111 112345666655444566666789999998732 12111 00000000114578999998776
Q ss_pred eCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 214 TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 214 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
.|| -+||.+..+.+..+..+.... .=.|||.|.-++..+ .|||+.+-+.++..+.- ++ ..|.|+.
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~----~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dq-c~VtFNs 1311 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYG----GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQ-CAVTFNS 1311 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecc----cccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cc-eEEEecc
Confidence 344 489998877777666544222 236999999888865 48999876655544321 22 3678888
Q ss_pred CCcEE
Q psy16316 294 KFNMM 298 (335)
Q Consensus 294 ~~~~~ 298 (335)
.|.++
T Consensus 1312 tG~Vm 1316 (1516)
T KOG1832|consen 1312 TGDVM 1316 (1516)
T ss_pred Cccch
Confidence 87654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-06 Score=69.92 Aligned_cols=206 Identities=17% Similarity=0.271 Sum_probs=127.8
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-CceeEE----E-e----cC---------CcceEEECCCC-CEEEEE
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-NCQGIM----H-V----SG---------SRPIAAFDPEG-LIFGVG 166 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~~~~~----~-~----~~---------~~~~~~~~~~~-~~~~~~ 166 (335)
.+.|+++.|...|.+|++|...|.|.++.-... .|...+ + + .. ...+-.+.+.+ ..|...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 467899999999999999999999999975432 232211 0 0 00 11233455654 577888
Q ss_pred EcCCeEEEEEccCCC-----------------CCceeeEE---------------------eccCCCccceEEEEccCCC
Q psy16316 167 VNSDTIKLYDVRSFD-----------------KGPFSNFK---------------------FAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~-----------------~~~~~~~~---------------------~~~~~~~~~~~~~~s~~~~ 208 (335)
+.|.++++|.+.... +++....+ ....+...++++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999976420 11110000 0112344567889998888
Q ss_pred EEEEEeCCCeEEEEECCCCee-eee--ecccc--cCCCCceEEEEcCC-CcEEEEEeCCCcEEEEECCCCe------eEE
Q psy16316 209 YILISTNGSIIRTFDAYNGQC-LQT--LAGFL--NNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKGF------KVC 276 (335)
Q Consensus 209 ~l~~~~~~~~i~i~d~~~~~~-~~~--~~~~~--~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~------~~~ 276 (335)
.++++ ++=.|.+|+++--.. ... +..+. .-..-+.+..|+|. ...+.-.+..|.|++-|+.... +..
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 87776 566799998764321 111 11110 01123556789995 4566667778999999986221 111
Q ss_pred --EeCC-------CCCCCeEEEEeCCCCcEEEeeec-eeEEeccccc
Q psy16316 277 --VLDA-------DHPSPVQTIQFNPKFNMMASACT-NLAFWIPTYL 313 (335)
Q Consensus 277 --~~~~-------~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~~~~ 313 (335)
.++. +-...|.++.|+|+|.++++-+. +++||.....
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 1111 12246889999999999999984 7999976443
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00021 Score=70.18 Aligned_cols=202 Identities=14% Similarity=0.238 Sum_probs=128.2
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE---------
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL--------- 92 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--------- 92 (335)
+.|.++.|..++.-++.+..+|.|.+-|.++.... -+-....+|.+.+|+++.+...++++. +++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~--~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGR--QTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCC--cEEEEEeccccchhc
Confidence 58999999999999999999999999988776432 122346789999999998877766652 232221
Q ss_pred --------------EcCCCceEeeecCCC---------------------CCeEEEEECCCCCEEEE-----eeCCCcEE
Q psy16316 93 --------------SLHDNKYIRYFPGHT---------------------KKVNSLCLSPIDDTFIS-----GSYDKTVR 132 (335)
Q Consensus 93 --------------~~~~~~~~~~~~~H~---------------------~~V~~~~~~~~~~~l~s-----~s~D~~i~ 132 (335)
++.-|+....|+|-. +.=++++|-.||++++. ...-+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 111111111232111 11135889999988777 33238999
Q ss_pred EeecCCCCceeEE-EecCCcceEEECCCCCEEEEEE---cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 133 LWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGV---NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 133 vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
+||-. +.....- ...+...+.+|.|.|.++++-. +++.|.+|.-+..+-+.. .+.... ....+..++|+.++.
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-~l~~p~-de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-VLPFPL-DEKEVEELAWNSNSD 302 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-ccCCcc-cccchheeeecCCCC
Confidence 99976 4332221 2334456789999999888753 455788887554322211 111111 122367899999999
Q ss_pred EEEE---EeCCCeEEEEECCCCee
Q psy16316 209 YILI---STNGSIIRTFDAYNGQC 229 (335)
Q Consensus 209 ~l~~---~~~~~~i~i~d~~~~~~ 229 (335)
.|++ ......|++|-+.+...
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEE
Confidence 9998 44556699999877643
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-06 Score=77.02 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=118.2
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCE
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
|+....+..+|+.+.+..+...--...|.-+.. +++.+.+|..-|+|-+=|.++.+.+..+. .+...+..|+-.|++
T Consensus 153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfDv~GNl 229 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFDVQGNL 229 (1118)
T ss_pred cchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-ccccceeeeeccCCe
Confidence 334455666788888777766544445666655 35789999999999999999887776552 222345678889999
Q ss_pred EEEEEc---------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCee--e
Q psy16316 163 FGVGVN---------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQC--L 230 (335)
Q Consensus 163 ~~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~--~ 230 (335)
+++|+- |.-|++||+|.++..+. +.+..+. .-+.|+|.- ..+++++..|...+.|..+... .
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~P----~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYGP----QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhhhhccCC--cccccCc----hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 988863 55789999998654322 2222222 125677764 3567777888888888433211 1
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.....+ .....+..+++|++++.+|.|..+|.|.+|-
T Consensus 304 ~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111111 1223377899999999999999999999996
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.001 Score=60.62 Aligned_cols=230 Identities=15% Similarity=0.101 Sum_probs=128.2
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~ 112 (335)
+..++.++.+|.+.-+|.++|+.................. .. .++ .+..++.+.-+|..+++.+-.++.....+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~-~v~-v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--DG-LVL-VHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--CC-EEE-EECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 4466677889999999999998776543322111111111 12 222 2345788888999999877655432111000
Q ss_pred -EEECC--CCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc---c-----eEEECC--CCCEEEEEEcCCeEEEEEccC
Q psy16316 113 -LCLSP--IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR---P-----IAAFDP--EGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 113 -~~~~~--~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~---~-----~~~~~~--~~~~~~~~~~d~~v~iwd~~~ 179 (335)
..-+| .+..++.++.++.+...|..+++........... . .....| .+..+.+++.++.+.-+|..+
T Consensus 196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 196 RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 00111 1335666778999999998887754332211100 0 000111 133444566778888888876
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.+.. . .... .. ... ....+..+++++.++.+..+|..+++.+-+....... ....... .+..|+.++
T Consensus 276 G~~~-W-~~~~--~~---~~~--~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 276 GQIV-W-KREY--GS---VND--FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR--LLTAPVL--YNGYLVVGD 342 (394)
T ss_pred CCEE-E-eecC--CC---ccC--cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC--cccCCEE--ECCEEEEEe
Confidence 4311 1 1110 00 011 1224667778888999999999998764332211110 0111111 256788899
Q ss_pred CCCcEEEEECCCCeeEEEeC
Q psy16316 260 TDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~~ 279 (335)
.||.|+..|..+|+.+....
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CCCEEEEEECCCCCEEEEEE
Confidence 99999999999998776654
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00048 Score=64.74 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=90.1
Q ss_pred hcccceeeeccCCccEEEEEECCC------------CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSAD------------GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~------------g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (335)
++++..+++..|+..|+.|.|.|- .-++|++...|.|.+||...+...-.+..+...+..+.|.+...
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 678899999999999999999872 23788999999999999998877766666777788888876543
Q ss_pred e--eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC-C-EEEEeeCCCcEEEee
Q psy16316 77 A--AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-D-TFISGSYDKTVRLWD 135 (335)
Q Consensus 77 ~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~-~l~s~s~D~~i~vWd 135 (335)
. .+++.-....++.+||..+|+..-.+..-.....|+.+.|-+ + +.+.+ ..|.+-+-+
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~ 184 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCK 184 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEe
Confidence 2 222222236789999999998776555444556678888854 3 33444 345554444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00034 Score=59.89 Aligned_cols=197 Identities=17% Similarity=0.245 Sum_probs=115.3
Q ss_pred EEECCCCCEEEEe-----cCCCeEEEEEccCC-cceeeeecccccceEEEEecCCCeeEEeecCC---------------
Q psy16316 27 IDYSADGLLLISC-----SEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI--------------- 85 (335)
Q Consensus 27 v~~s~~g~~lasg-----s~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 85 (335)
..||+||++|.+. +..|.|-|||...+ ..+..+..+..+...+.+.+++...+++-++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 4599999998875 34689999999833 33445555556667788888886666665442
Q ss_pred -CCeEEEEEcCCCceEee--e--cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCC
Q psy16316 86 -DDTVRYLSLHDNKYIRY--F--PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG 160 (335)
Q Consensus 86 -d~~i~~~~~~~~~~~~~--~--~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
+..+.+.|..+++.+.. + .-|...|..+++.++|..++..-+.+. .. ...+++..
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~-------~~---------~~~PLva~---- 195 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD-------PG---------DAPPLVAL---- 195 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC-------CC---------ccCCeEEE----
Confidence 34455667777776655 4 237778888888887765554433321 10 01112211
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
-..++.+...+..... ......-+-++++++++.++++++ .++.+.+||..+++.+....
T Consensus 196 -----~~~g~~~~~~~~p~~~---------~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----- 256 (305)
T PF07433_consen 196 -----HRRGGALRLLPAPEEQ---------WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----- 256 (305)
T ss_pred -----EcCCCcceeccCChHH---------HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----
Confidence 1111222322221100 001112345799999999887665 46789999999998766542
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcE
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRI 264 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v 264 (335)
...+..++-.+++ +++|.+. |.+
T Consensus 257 l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 257 LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred cCceeeeeecCCc-eEEeCCC-ccE
Confidence 1223345555555 5555544 443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00016 Score=68.53 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=130.7
Q ss_pred EECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC-cceEEECCCCCEEEEEEcC-C----eEEEEEccCCCCC--ce
Q psy16316 114 CLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPEGLIFGVGVNS-D----TIKLYDVRSFDKG--PF 185 (335)
Q Consensus 114 ~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-~----~v~iwd~~~~~~~--~~ 185 (335)
++++.+..++-|+.||.|-+.+-+-............ +..+....+..++++-+.| + .+++||+...+.. |.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 3467778999999999988776332111111111111 2222222333455554443 3 6999999865322 22
Q ss_pred ee--EE-e--c-cCCCccceEEEEccCCCEEEEEeCCCeEEEEECC--CCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 186 SN--FK-F--A-AEKECDWTGIKFSADGKYILISTNGSIIRTFDAY--NGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 186 ~~--~~-~--~-~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
.- +. . . .....+...++.+.+-..+++|-.+|.|..+.-. .-+-.+ ..-......+|+.++|-.+++.++-
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCceeeEEecCCceeEE
Confidence 11 01 1 1 1124567789999999999999999999988532 111111 1112234567899999888876333
Q ss_pred EeCCCcEEEEECCCCee-EEEeCCCCCCCeEEEEeCCCCc-EEEeeeceeEEecccccccccCCCCcc-ceEEEEEeee
Q psy16316 258 GSTDGRIHIWNAEKGFK-VCVLDADHPSPVQTIQFNPKFN-MMASACTNLAFWIPTYLSNHQEPDTID-NLKIYLGVLC 333 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~~~s~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~ 333 (335)
...-..|.+|.+..... ...+ ..|..++++.+|++..+ ++++++.-+.+|..+ +.....+++ +.|-+.++-+
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~l-d~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd---~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVL-DNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD---GRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred EEecceeEEEEecCCCcceeee-ccCCccceeeecCCCCccEEEecCceEEEEcCC---CcceeeeecCCCeEEEEEEe
Confidence 33445799999874331 3334 45888999999998766 555556667777543 666777787 8888877655
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00068 Score=56.57 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=121.8
Q ss_pred EEECCCCCEEEEecCCCeEEEEEccCC--cceeeeeccc---ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 27 IDYSADGLLLISCSEDDQIVIYDCELG--TNKRTVFSKK---YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 27 v~~s~~g~~lasgs~Dg~i~lwd~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
++.++||+.||.- .|..|-|-..... .........+ ..-..++|+++.. +++.+...++|+++|+....+ .
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~l-f 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSEL-F 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEeccccee-E
Confidence 4567888877765 6777777644322 2222222222 2246688987765 445555689999999986443 3
Q ss_pred eecC-C------CCCeEEEEECCCC------CEEEEeeCCCcEEEeecCCC-----CceeEEE----ecCCcceEEECCC
Q psy16316 102 YFPG-H------TKKVNSLCLSPID------DTFISGSYDKTVRLWDLRSP-----NCQGIMH----VSGSRPIAAFDPE 159 (335)
Q Consensus 102 ~~~~-H------~~~V~~~~~~~~~------~~l~s~s~D~~i~vWd~~~~-----~~~~~~~----~~~~~~~~~~~~~ 159 (335)
.++. + ...|..+.|.+.. ..|+.-..+|.++-+=+..+ +....+. ....+..+.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 3321 1 2456777775532 25677778888876665322 1122222 2345667788898
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCcc---ceEEEEccCCCEEEEEeCCCe------EEEEECCCCeee
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD---WTGIKFSADGKYILISTNGSI------IRTFDAYNGQCL 230 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~~~~~~~~------i~i~d~~~~~~~ 230 (335)
.+++.+|+.... + .... ....+. |+-+.-+|..+.+. ..++.. -.++.+-+.+..
T Consensus 159 h~LLlVgG~~~~------~---~~~s------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~f 222 (282)
T PF15492_consen 159 HRLLLVGGCEQN------Q---DGMS------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFF 222 (282)
T ss_pred CCEEEEeccCCC------C---Cccc------cccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeeccceeee
Confidence 777777654321 0 0000 000111 11122222222211 111111 123333322211
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
.........+..+..||||+.||+...+|.|.+|++..-..
T Consensus 223 ---s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 223 ---SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ---eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 11122456788999999999999999999999999976543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00027 Score=63.76 Aligned_cols=289 Identities=15% Similarity=0.170 Sum_probs=136.2
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCccee-eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-----
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR-TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----- 96 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----- 96 (335)
.|+.++|+++..-||.|-..|.|.||.....+.-. ............++... +..-.+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLN-----------NSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GG-----------GSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccccc-----------CCCcceEEehhhCCcc
Confidence 58999999999999999999999999876443211 00000000000111110 01111122211
Q ss_pred ---C-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC---------CcceE-----EECC
Q psy16316 97 ---N-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG---------SRPIA-----AFDP 158 (335)
Q Consensus 97 ---~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~---------~~~~~-----~~~~ 158 (335)
+ .+...++...++|++++.+.-| +++.|..||.+.|.|+|.+..+...+... ....+ .+..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1 2334456668999999997554 89999999999999998876655433322 01122 2333
Q ss_pred CC---CEEEEEEcCCeEEEEEccCCCCCcee-eEEecc-CCCccceEE-EEccC--------------------CCEEEE
Q psy16316 159 EG---LIFGVGVNSDTIKLYDVRSFDKGPFS-NFKFAA-EKECDWTGI-KFSAD--------------------GKYILI 212 (335)
Q Consensus 159 ~~---~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~s~~--------------------~~~l~~ 212 (335)
|+ -.+.+|++.|.+.+|.+.....+.+. .+.... .....+..+ .|+.+ -+-+++
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 44 46788999999999987531111111 111111 111112111 12211 123455
Q ss_pred EeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE-----cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC---CCC
Q psy16316 213 STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF-----TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---HPS 284 (335)
Q Consensus 213 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~---h~~ 284 (335)
......++++...+.+...+... .......+.+ ...+..|++-..+|.|+++.+..-+++...... +..
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EEcccceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 55678899999988776543321 1011112334 235667899999999999999877666554331 223
Q ss_pred CeEEEEeCCCCcEEEeee-ce---eEEeccccc---ccccCCCCccceE
Q psy16316 285 PVQTIQFNPKFNMMASAC-TN---LAFWIPTYL---SNHQEPDTIDNLK 326 (335)
Q Consensus 285 ~v~~v~~sp~~~~~~s~~-~~---~~~w~~~~~---~~~~~~~~~~~~~ 326 (335)
.+....|.++|.++.-.+ .. +.+|..... ...+..++.-|-+
T Consensus 308 ~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~~~d~L~np~ 356 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAPPTDTLYNPN 356 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSSEEEEEEEES--------------B---TT
T ss_pred cccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCCCCCeEECCC
Confidence 455678899998876554 34 444543222 2334444444433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.8e-06 Score=67.14 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=65.7
Q ss_pred eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce-EeeecCCCCCeEEEEECCC-CCE
Q psy16316 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-IRYFPGHTKKVNSLCLSPI-DDT 121 (335)
Q Consensus 44 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~H~~~V~~~~~~~~-~~~ 121 (335)
..+.|+++..+....-.....++..++-.|. ...+++.+..|+.+-+||.+.... .-.+++|+.+|+-+.|||. +..
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 4456665543322211111223555555554 344666777899999999988744 3467899999999999996 578
Q ss_pred EEEeeCCCcEEEeecCC
Q psy16316 122 FISGSYDKTVRLWDLRS 138 (335)
Q Consensus 122 l~s~s~D~~i~vWd~~~ 138 (335)
|+++++||++-.||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999775
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0026 Score=58.03 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=127.1
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccc-cc-e-----EEEEecC-CCeeEEeecCCCCeEEEEEcCCCceEeee
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-GV-D-----LIRFTHA-KQAAIHASTKIDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~-~~-~-----~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 103 (335)
.+..+..++.+|.+.-+|.++|+.......... .. . .+.-.+. ....+ ..+..++.+.-+|.++++.+-..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v-~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKV-YIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEE-EEEcCCCEEEEEECCCCCCcccc
Confidence 355777788899999999999987665432210 00 0 0000000 01122 23346788999999998876555
Q ss_pred cCCCCCeEE-EEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC--------CcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 104 PGHTKKVNS-LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG--------SRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 104 ~~H~~~V~~-~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
+... .+.+ ..+ .+..++.++.++.+..+|..+++......... ..+.+ .+..+..+..++.+..
T Consensus 147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v----~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT----AFGGAIVGGDNGRVSA 219 (394)
T ss_pred cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE----ECCEEEEEcCCCEEEE
Confidence 4322 2221 111 13466677789999999999988665443221 11111 1224555667788888
Q ss_pred EEccCCCCCceeeEEeccC-CC-ccceEEEEcc--CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 175 YDVRSFDKGPFSNFKFAAE-KE-CDWTGIKFSA--DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~-~~-~~~~~~~~s~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
+|..+.+..-......... .. .....+.-+| .+..+++++.++.+..+|..+|+..-+... . ....+. .
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~---~~~~~~--~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--G---SVNDFA--V 292 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--C---CccCcE--E
Confidence 8876543211100000000 00 0000011111 245667777889999999999976543221 1 111112 2
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEE
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~ 277 (335)
++..+..++.+|.+..+|..++.....
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 456777788899999999998876543
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.6e-05 Score=64.13 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=87.3
Q ss_pred cccceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.|+..+.+.+|...|..++|||... ++..++-+.+|+|.|+++..+......+ ..+-.++|..+. ..++..|-..|.
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGM 259 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeEEeccCce
Confidence 3455667889999999999999876 8899999999999999998776665554 677888888776 455566678999
Q ss_pred EEEEEcCCCc-eEeeecC--CCCCeEEEEE------CCCCCEEEEeeCCCcEEEeecC
Q psy16316 89 VRYLSLHDNK-YIRYFPG--HTKKVNSLCL------SPIDDTFISGSYDKTVRLWDLR 137 (335)
Q Consensus 89 i~~~~~~~~~-~~~~~~~--H~~~V~~~~~------~~~~~~l~s~s~D~~i~vWd~~ 137 (335)
|.+||+...+ +...+.+ -..+|..++. .+.+.+|+..+.+ +..|++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV 315 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence 9999997543 2333332 1234444443 2335556555554 4577764
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-05 Score=62.29 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=88.0
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-eeeecccccceEEEEecCCCeeEEeecCCCCe------
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT------ 88 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------ 88 (335)
+|..|+++=.+-..+--++.++++..||.+.+.+.+.-... ..+.....+....++.... .++.++ .-+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~--~~i~s~-~~g~~n~~d~ 160 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHG--NSILSG-GCGNWNAQDN 160 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecc--cEEecC-CcceEeeccc
Confidence 34455555444445556788999999999999998752211 1111111111111111111 111111 1222
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECC-CCCEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDP-EGLIFG 164 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~ 164 (335)
...|+++..+....-+--.+.|.+++-+|. .+++++|+.||.+-+||.+........ -+.....-+.|+| ++..+.
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 233444332221111111245999999995 467888999999999999876322111 1122222345666 567788
Q ss_pred EEEcCCeEEEEEcc
Q psy16316 165 VGVNSDTIKLYDVR 178 (335)
Q Consensus 165 ~~~~d~~v~iwd~~ 178 (335)
++++||.+--||..
T Consensus 241 t~sedGslw~wdas 254 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAS 254 (319)
T ss_pred EecCCCcEEEEcCC
Confidence 99999999999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0026 Score=57.57 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=148.0
Q ss_pred EEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC-CCCeEEEEEcCCCceEe
Q psy16316 24 ITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK-IDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 24 V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~ 101 (335)
-..+.+++.++ ..++...+..|.+.|..+......+.... ....+++.++.....++-.. .++++.+.|..+.+.++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 34677888887 56666677999999988777766554333 56677888887776666655 58999999999998887
Q ss_pred eecCCCCCeEEEEECCCCCEEE-EeeCCCcEEEeecCCCCcee-----EEEecCCcceEEECCCCCEEEEEEcC---CeE
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQG-----IMHVSGSRPIAAFDPEGLIFGVGVNS---DTI 172 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d---~~v 172 (335)
....-..+ ..+++.|+++.+. +-..++.|.+.|........ ..........+.++|++..+.+.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 76544445 8899999998554 44589999999976654432 11122223456889999855544333 478
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-CeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
...|..... ........+.. ....+..+|+|.++.+.... +.+.+.|..+...............++..+++.+.
T Consensus 234 ~~id~~~~~---v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 234 LKIDTATGN---VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEeCCCce---EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888876521 11111111221 23468899999999888544 78999999888777665544443444555666554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=71.82 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=59.5
Q ss_pred CccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
...+.+.+++|++..++.|+.||.|.+||...+..... . ..-.+..++|||+|.++++|+..|.+.+||+.-+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 44567899999999999999999999999887633221 1 2223667999999999999999999999998744
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.18 E-value=5e-06 Score=47.35 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=35.0
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD 49 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd 49 (335)
++...+..|.+.|.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0005 Score=64.82 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=113.3
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP 158 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~ 158 (335)
+++.+..+|.+.+++....- +....|... ..+|.+++|||.||+|.+-.+-+.+.............++++|
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P 122 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP 122 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc
Confidence 45556677788877764432 222234333 4568999999999999999998877766666666677888998
Q ss_pred C-----CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 159 E-----GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 159 ~-----~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
+ .+.+++|+..| +.++.=+-+... ... ...+....+.+++|. |+++|=+++.| |++||+.+.+.+..+
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhhcCc--cce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 7 45788888877 666543211111 111 234455677888885 66666665544 899999988877665
Q ss_pred cccc---cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 234 AGFL---NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 234 ~~~~---~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.... +....+..+.|.++.++ +-| ...+|+|..+.
T Consensus 196 ~~p~~~~R~e~fpphl~W~~~~~L-VIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 196 PPPSQSVRPELFPPHLHWQDEDRL-VIG-WGDSVKICSIK 233 (846)
T ss_pred CCCCCCCCcccCCCceEecCCCeE-EEe-cCCeEEEEEEe
Confidence 4322 12234456788877544 333 44568888776
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.9e-05 Score=68.72 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=60.9
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
.....|.|++++|+...|+.|+.||+|.+||...+..... ...-....++|+|+|.++++|+..|.+.+||+-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4678999999999999999999999999999877643322 223334568999999999999999999999975
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00078 Score=61.45 Aligned_cols=195 Identities=17% Similarity=0.217 Sum_probs=117.8
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeC---C-CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEE-cCCe
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSY---D-KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV-NSDT 171 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D-~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~ 171 (335)
+...+.+..-...+..-.|+|++..++..+. . ..+.++|+.+++...+....+....-.|+|+|+.++.+. .|+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 4334444433456667789999876655432 2 358899999988777766666666678999998776554 4554
Q ss_pred --EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C--eEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 172 --IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S--IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 172 --v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
|.++|+.... ...+... ...-..=.|+|||++++-.++. + .|.+++.+.++. +++........ ..
T Consensus 262 ~~iy~~dl~~~~---~~~Lt~~---~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~---~p 331 (425)
T COG0823 262 PDIYLMDLDGKN---LPRLTNG---FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS---NP 331 (425)
T ss_pred ccEEEEcCCCCc---ceecccC---CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc---Cc
Confidence 5555555422 1111111 1111234699999999876653 3 377777776654 33332222111 46
Q ss_pred EEcCCCcEEEEEeCC-Cc--EEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 247 SFTPDSKYVISGSTD-GR--IHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 247 ~~sp~~~~l~tgs~d-g~--v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
.++|||++|+..+.. |. |.+.+..++.....+ .++.....-.|.|++.++...++
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceEEEecc
Confidence 799999998887753 44 666666655543333 23444556678888877665543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=45.21 Aligned_cols=38 Identities=37% Similarity=0.639 Sum_probs=34.0
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEee
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd 135 (335)
+++..+.+|...|.++.|++.++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00042 Score=65.78 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=83.9
Q ss_pred CCccEEEEEECCCCCEEEEecC----CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 20 NTDKITSIDYSADGLLLISCSE----DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
..+.-+-.+|+|...+||.++- .|.+.||- ++|+.-+.+.- ...+..++|.| +..+++.+=--+.+.+|...
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHP--EEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccCh--HHHHHhhccccceeEEEecC
Confidence 3344455789999999998874 58888884 45654333211 11234466655 34455665556788999988
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~ 137 (335)
+.+.......|+.+|..+.|+++|+.++|+..=|.|.+|...
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 888777778899999999999999999999999999999765
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00057 Score=64.45 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=115.3
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
.+.++|++++ +++|+-|..+|.+.+.+.+-.. .+.+.|... +..+..+++++.||++.+-.+.+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc--------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4555666554 5789999999999999875332 222222211 456678889999999999988887766
Q ss_pred eeecCCCCCeEEEEECCC-----CCEEEEeeCCCcEEEeecCC-CCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 101 RYFPGHTKKVNSLCLSPI-----DDTFISGSYDKTVRLWDLRS-PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~-----~~~l~s~s~D~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
.++. -..++.+++++|+ .+++++|+.-| +.+..-+= +....+....+.-++..+.-.|+++|-+.++| +++
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKV 183 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEE
Confidence 6554 3478999999998 36899999888 77765321 11112222233334455555788998887665 799
Q ss_pred EEccCCCCCceeeEEeccC--CCc-cceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 175 YDVRSFDKGPFSNFKFAAE--KEC-DWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~--~~~-~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
||...... ......... +.. --..+.|.++.+.++.- +.+|++..++
T Consensus 184 yd~~~~~~--l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW--~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQR--LTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW--GDSVKICSIK 233 (846)
T ss_pred Eeccccce--eeccCCCCCCCCcccCCCceEecCCCeEEEec--CCeEEEEEEe
Confidence 99876322 111111110 000 01347788777655443 3457777766
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0073 Score=51.88 Aligned_cols=225 Identities=11% Similarity=0.139 Sum_probs=123.1
Q ss_pred EecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCC--eEEEEECCCCCEEEEee-----CCCcEEEeecC-CCCce
Q psy16316 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK--VNSLCLSPIDDTFISGS-----YDKTVRLWDLR-SPNCQ 142 (335)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~--V~~~~~~~~~~~l~s~s-----~D~~i~vWd~~-~~~~~ 142 (335)
..|.....+++.-.-.....++|..+++..+.+..-.+. .=...|+++|++|.+.- ..|.|-|||.. +.+.+
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 334333333333333445667888888877665432222 12457999999998854 35889999998 33333
Q ss_pred eEEEecCCc-ceEEECCCCCEEEEEE-------cCCeEEEEEccCCCCC----------ceeeEEec-cCCCccceEEEE
Q psy16316 143 GIMHVSGSR-PIAAFDPEGLIFGVGV-------NSDTIKLYDVRSFDKG----------PFSNFKFA-AEKECDWTGIKF 203 (335)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~~~-------~d~~v~iwd~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~ 203 (335)
..+...+.- .-+.+.|+|..++++- +.+..|+ ++.+++.. ...+.... ..+...+..+++
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 444322221 2245788887666652 1122222 23332211 11111111 112334667888
Q ss_pred ccCCCEEEEEeCCC-------eEEEEECCCCeeeeeecc----cccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEECCC
Q psy16316 204 SADGKYILISTNGS-------IIRTFDAYNGQCLQTLAG----FLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAEK 271 (335)
Q Consensus 204 s~~~~~l~~~~~~~-------~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~~~ 271 (335)
+++|..++..-..+ .+.+++... .++.+.. ......++-++++++++.+++..| ..+.+.+||..+
T Consensus 171 ~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 171 DGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred cCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 88887665543221 233333222 1222211 122345677899999998876555 567899999999
Q ss_pred CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 272 GFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 272 ~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
+..+..... .-+..|+-.+++ +++|.+
T Consensus 249 g~~~~~~~l---~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 249 GRLLGSVPL---PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CCEeecccc---CceeeeeecCCc-eEEeCC
Confidence 987665432 245567777776 555543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.015 Score=54.49 Aligned_cols=235 Identities=12% Similarity=0.111 Sum_probs=129.3
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeeccccc-----c-eEEEEecCCCeeEEeec-------CCCCeEEEEEcCCCceE
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-----V-DLIRFTHAKQAAIHAST-------KIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~-------~~d~~i~~~~~~~~~~~ 100 (335)
..++.++.|+.|.-+|.++|+.+......... + ....+. ....++.+. ..++.+.-+|..+++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56777888999999999999887655332210 1 011111 111222211 23577888898888876
Q ss_pred eeecCCCC--------------------CeE-EEEECCCCCEEEEeeCCC------------------cEEEeecCCCCc
Q psy16316 101 RYFPGHTK--------------------KVN-SLCLSPIDDTFISGSYDK------------------TVRLWDLRSPNC 141 (335)
Q Consensus 101 ~~~~~H~~--------------------~V~-~~~~~~~~~~l~s~s~D~------------------~i~vWd~~~~~~ 141 (335)
-.++.... .|+ +.++.+.+..++.++.|+ .|.-.|+.+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 55432111 111 234444556677776554 788999998887
Q ss_pred eeEEEecCC--------c-ceE-EEC-CCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC
Q psy16316 142 QGIMHVSGS--------R-PIA-AFD-PEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG 207 (335)
Q Consensus 142 ~~~~~~~~~--------~-~~~-~~~-~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 207 (335)
.-..+.... . +.+ ... -++. ++++++.++.+...|.++.+. .-..... ...++.+|
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--~W~~~~~------~~~~~~~~-- 338 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--ISARPEV------EQPMAYDP-- 338 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE--eeEeEee------ccccccCC--
Confidence 655432211 0 111 111 1232 566777889999999877432 1111110 11233444
Q ss_pred CEEEEE------------------eCCCeEEEEECCCCeeeeeecccccC-C----CCceEEEEcCCCcEEEEEeCCCcE
Q psy16316 208 KYILIS------------------TNGSIIRTFDAYNGQCLQTLAGFLNN-K----GCPLEASFTPDSKYVISGSTDGRI 264 (335)
Q Consensus 208 ~~l~~~------------------~~~~~i~i~d~~~~~~~~~~~~~~~~-~----~~v~~~~~sp~~~~l~tgs~dg~v 264 (335)
..+.++ ..++.+.-+|+.+|+.+-+....... . .....-..-..+..|..|+.||.|
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l 418 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYF 418 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeE
Confidence 223222 23567888888888765444321000 0 000000111245788999999999
Q ss_pred EEEECCCCeeEEEeCC
Q psy16316 265 HIWNAEKGFKVCVLDA 280 (335)
Q Consensus 265 ~iwd~~~~~~~~~~~~ 280 (335)
+.+|..+|+.+...+.
T Consensus 419 ~ald~~tG~~lW~~~~ 434 (488)
T cd00216 419 RAFDATTGKELWKFRT 434 (488)
T ss_pred EEEECCCCceeeEEEC
Confidence 9999999988877654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00036 Score=67.52 Aligned_cols=199 Identities=16% Similarity=0.237 Sum_probs=120.2
Q ss_pred EEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCC-------EEEEEEcCCeEEEEEccCCCCCceeeEEeccCC
Q psy16316 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL-------IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 122 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
|......+.|.--|+..++.+..+......++..+.|+.+ --.+|.+++.+..||+|-........-......
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 3344567889999999999888877666555666655422 235678889999999985321111100111123
Q ss_pred CccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC--C-
Q psy16316 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE--K- 271 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~--~- 271 (335)
...+++++-+.+| ++|+|+.+|.||+||- .++..++. ..+-..+|..++.+.||++|+... +..+.+++.. .
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~--lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~~g 651 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA--LPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTLIKDG 651 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc--CCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEeeecC
Confidence 3456778888777 5789999999999994 33322222 223346789999999999876655 4567777642 1
Q ss_pred ------Cee------------EEEeCCCCCCC-----eEEEEeCCC---------Cc-EEEeeeceeEEecc-ccccccc
Q psy16316 272 ------GFK------------VCVLDADHPSP-----VQTIQFNPK---------FN-MMASACTNLAFWIP-TYLSNHQ 317 (335)
Q Consensus 272 ------~~~------------~~~~~~~h~~~-----v~~v~~sp~---------~~-~~~s~~~~~~~w~~-~~~~~~~ 317 (335)
|+. ...+...|... ...+.|.|. -. +++|.+.-+-+|++ ....+..
T Consensus 652 ~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~ 731 (794)
T PF08553_consen 652 KNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKK 731 (794)
T ss_pred CccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCCC
Confidence 110 00111112111 233455441 12 44455556899998 7777777
Q ss_pred CCCCccce
Q psy16316 318 EPDTIDNL 325 (335)
Q Consensus 318 ~~~~~~~~ 325 (335)
.++.|.-.
T Consensus 732 ~~Y~ikry 739 (794)
T PF08553_consen 732 DPYQIKRY 739 (794)
T ss_pred CceEEEEc
Confidence 88777543
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.011 Score=51.40 Aligned_cols=246 Identities=13% Similarity=0.132 Sum_probs=137.0
Q ss_pred EEEECCCCCEEEEecC----------CCeEEEEEccCCcceeeeeccc---c----cceEEEEecCCCeeEEeecCCCCe
Q psy16316 26 SIDYSADGLLLISCSE----------DDQIVIYDCELGTNKRTVFSKK---Y----GVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~----------Dg~i~lwd~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.+..+|+|+.+.+++. .-.|.+||.++-.....+.-.. . .....+++.++...++.-..--..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3567999998887653 4578999999887665443221 1 123345555555555544444556
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCC-CCceeEEE--ecC-Ccce---EEECCCC
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS-PNCQGIMH--VSG-SRPI---AAFDPEG 160 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~-~~~~~~~~--~~~-~~~~---~~~~~~~ 160 (335)
|.+.|+..++.+..+. ...+..+ -|.+ +-+.+-+.||++.-..+.. ++...... ... ..++ -.+...+
T Consensus 120 VtVVDl~~~kvv~ei~--~PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEID--TPGCWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEE--GTSEEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeec--CCCEEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 7777888887776654 2222222 2332 4577888999999888874 33321110 000 0111 1122233
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEec--cCC-----CccceEEEEccCCCEEEEEeC----------CCeEEEEE
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA--AEK-----ECDWTGIKFSADGKYILISTN----------GSIIRTFD 223 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~s~~~~~l~~~~~----------~~~i~i~d 223 (335)
..+.--+.+|.|.-.|+.............. .+. ...+..+++++..+.|.+-.. +..|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 3333345667777777654221111111111 111 123445889887766554321 23599999
Q ss_pred CCCCeeeeeecccccCCCCceEEEEcCCCc-EEEE-EeCCCcEEEEECCCCeeEEEeC
Q psy16316 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVIS-GSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~t-gs~dg~v~iwd~~~~~~~~~~~ 279 (335)
+.+++.+.++... ..+.++..+-+.+ +|.+ ...++.+.+||..+|+.+..++
T Consensus 276 ~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 276 LKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9999999888632 1244677777655 5544 4568999999999998887775
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0015 Score=64.39 Aligned_cols=189 Identities=15% Similarity=0.225 Sum_probs=121.2
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEcc----CCCC
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR----SFDK 182 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~----~~~~ 182 (335)
.+.|.++.|..+.+.++-+..+|.|.+-|..+....-+-.....+.++.|+|++.+++..+..+++.+-.-. ....
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 368999999999998888889999999988776554444556667788999999999999888887765421 0000
Q ss_pred -----------------CceeeEEeccC------------------CCccceEEEEccCCCEEEEEe----CC-CeEEEE
Q psy16316 183 -----------------GPFSNFKFAAE------------------KECDWTGIKFSADGKYILIST----NG-SIIRTF 222 (335)
Q Consensus 183 -----------------~~~~~~~~~~~------------------~~~~~~~~~~s~~~~~l~~~~----~~-~~i~i~ 222 (335)
....++....+ ....=..+.|--||.++++.. .+ +.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 00001110000 000113488889999998732 34 889999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe---CCCcEEEEECCCCeeEEE----eCCCCCCCeEEEEeCCCC
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS---TDGRIHIWNAEKGFKVCV----LDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs---~dg~v~iwd~~~~~~~~~----~~~~h~~~v~~v~~sp~~ 295 (335)
|-+ |.. ...... ..+--.+++|-|.|..+|+-. .|++|.+|+-+ |.+-.. .+. ...+|..++|+.++
T Consensus 228 drE-g~L-ns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~-de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 228 DRE-GAL-NSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPL-DEKEVEELAWNSNS 301 (1265)
T ss_pred ccc-chh-hcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcc-cccchheeeecCCC
Confidence 977 322 111111 011123589999999998854 35579999864 332221 121 23348999999999
Q ss_pred cEEEee
Q psy16316 296 NMMASA 301 (335)
Q Consensus 296 ~~~~s~ 301 (335)
.+||..
T Consensus 302 diLAv~ 307 (1265)
T KOG1920|consen 302 DILAVV 307 (1265)
T ss_pred Cceeee
Confidence 998873
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0043 Score=58.28 Aligned_cols=201 Identities=15% Similarity=0.057 Sum_probs=110.2
Q ss_pred cCCccEEE-----EEECCCCCEEEEec-CCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--CCCCeEE
Q psy16316 19 ENTDKITS-----IDYSADGLLLISCS-EDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--KIDDTVR 90 (335)
Q Consensus 19 ~h~~~V~~-----v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~ 90 (335)
.+++.|+| +-++|||+.+...+ ..+.+.+.|.++.+...++.... ....+.+++++......+. -...++.
T Consensus 185 p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~ 263 (635)
T PRK02888 185 PRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLA 263 (635)
T ss_pred CCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCccee
Confidence 35566654 55677887664444 46777888988777666655433 3455666665544433321 1112222
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-----CCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-----PNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
..+..+...+..+.- ..+ -.+.++|+...- .++.|.+.|.++ ......+.......-+.++|||+++.+
T Consensus 264 em~a~e~d~~vvfni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV 337 (635)
T PRK02888 264 EMMAAERDWVVVFNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIA 337 (635)
T ss_pred eeccccCceEEEEch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEE
Confidence 222211111111110 000 023345665443 368899999987 334444444444456789999998766
Q ss_pred E-EcCCeEEEEEccCCCCC------ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy16316 166 G-VNSDTIKLYDVRSFDKG------PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 166 ~-~~d~~v~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+ ..+.++.+.|+.+.... +.....-..+.-..-...+|+++|+...+---|..|..|++.+
T Consensus 338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 5 45889999999864320 0000000000001113468999998666666788899999875
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.9e-06 Score=75.05 Aligned_cols=219 Identities=16% Similarity=0.242 Sum_probs=130.4
Q ss_pred ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeEEEEECCCC-CEEEEee----CCCcEEEeec
Q psy16316 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPID-DTFISGS----YDKTVRLWDL 136 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~~-~~l~s~s----~D~~i~vWd~ 136 (335)
..+.++++..+.+..+++.|..+|.|-+-.+.... ...+.++|...+++++|++-+ +.|+.|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34666777666667778888888999888775432 245677899999999999854 4555552 2566778887
Q ss_pred CCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
.+.-.. |-......++ .-...+.++|-.+.+.+++|...
T Consensus 137 ~s~ltv---------------Pke~~~fs~~--------------------------~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 137 NSLLTV---------------PKESPLFSSS--------------------------TLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred ccccCC---------------Cccccccccc--------------------------cccCccccccccCcchhhccccc
Confidence 654210 1110000010 00111246677788889999999
Q ss_pred CeEEEEECCCC-eeeeeecccccCCCCceEEEEcC-CCcEEEEEeCCCcEEEEECC-CCeeEEE----eCCCCCCCeEEE
Q psy16316 217 SIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTP-DSKYVISGSTDGRIHIWNAE-KGFKVCV----LDADHPSPVQTI 289 (335)
Q Consensus 217 ~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~-~~~~~~~----~~~~h~~~v~~v 289 (335)
+.++++|++.. .....+. ...+..+..+| .+.|+++-. ||.|.+||.. +-+.... -+...+.++..+
T Consensus 176 r~~~ifdlRqs~~~~~svn-----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVSSVN-----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred chhhhhhhhhhhhhhhhhh-----hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 99999998832 1111111 11234467778 677877776 8999999942 2111111 112234468999
Q ss_pred EeCCCC-cEEEeee---ceeEEecccccccccCCCCccceEEEEE
Q psy16316 290 QFNPKF-NMMASAC---TNLAFWIPTYLSNHQEPDTIDNLKIYLG 330 (335)
Q Consensus 290 ~~sp~~-~~~~s~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 330 (335)
+|.|.. .++++.. ++|+.+. --....+.+.-++.-++|+.
T Consensus 250 aycPtrtglla~l~RdS~tIrlyd-i~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYD-ICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred EeccCCcchhhhhccCcceEEEec-ccccCCcccccccceeeecc
Confidence 999964 3444443 4566552 22334455555666666655
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.011 Score=49.86 Aligned_cols=201 Identities=12% Similarity=0.143 Sum_probs=105.4
Q ss_pred eecCCCCCeEEEEECCCCCEEEEe-eCCCcEEEeecCCCCceeEEEecCC--cceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFISG-SYDKTVRLWDLRSPNCQGIMHVSGS--RPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~i~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
.+.+-...+..++|.|+.+.|++. ...+.|.-.|+ .++.+..+...+. ...+++-.++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455556679999999987655554 56677777775 4566666655442 2345555556555555457889999885
Q ss_pred CCCCC-ce---eeEEe--ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC---Ceeee--eeccc---ccCCCCce
Q psy16316 179 SFDKG-PF---SNFKF--AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN---GQCLQ--TLAGF---LNNKGCPL 244 (335)
Q Consensus 179 ~~~~~-~~---~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~---~~~~~--~~~~~---~~~~~~v~ 244 (335)
..... .. ..+.. ....+..+-+++|+|.+..|+++-...-.++|.+.. ..... ....+ ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 42211 11 12221 222344578999999988888887766566666543 11111 11111 11234567
Q ss_pred EEEEcCC-CcEEEEEeCCCcEEEEECCCCeeEEE--eCCCC------CCCeEEEEeCCCCcEEEeeece
Q psy16316 245 EASFTPD-SKYVISGSTDGRIHIWNAEKGFKVCV--LDADH------PSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 245 ~~~~sp~-~~~l~tgs~dg~v~iwd~~~~~~~~~--~~~~h------~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+++++|. +.+++-.++...|.++| .+|..... +..+. -.+--.++|.|+|.+.++.--|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 8999996 45677777788899999 45654333 32211 1245689999999988877555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=72.22 Aligned_cols=128 Identities=13% Similarity=0.257 Sum_probs=94.3
Q ss_pred EEEccCCCEEEEEe----CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 201 IKFSADGKYILIST----NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 201 ~~~s~~~~~l~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
..|+|..+++++++ .+|.|-|| .++|+..+.+.- .-.+.+++|+|..-.|+.|=+-|.+.+|+..+ .+.+
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~----P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~h 94 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY----PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETH 94 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc----ceehhhhccChHHHHHhhccccceeEEEecCC-ceee
Confidence 56899999988764 46778777 355654433321 11234689999988899999999999999764 3455
Q ss_pred EeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccccccccCCCC-ccceEEEEEeeee
Q psy16316 277 VLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYLSNHQEPDT-IDNLKIYLGVLCY 334 (335)
Q Consensus 277 ~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (335)
.....|+.+|..+.|||+|..+.+++ +.+.+|..+.....+...+ -+.++.++-+.||
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cf 155 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCF 155 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEE
Confidence 66778999999999999999999998 6789998775544444333 3566777777776
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0025 Score=59.75 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=92.5
Q ss_pred ECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEE--------------------------
Q psy16316 115 LSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV-------------------------- 167 (335)
Q Consensus 115 ~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 167 (335)
+.|+|..+ .+.-..+.+.+.|..+.+....+...+....+.++|+|.++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 34455443 333445667777877655554445555445567788887766553
Q ss_pred --------------cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCee---
Q psy16316 168 --------------NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQC--- 229 (335)
Q Consensus 168 --------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~--- 229 (335)
.++.|.+.|.++.............. .....+++++|||+++++++. +.+|.++|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 12345666654300000000011111 112246899999999988765 67899999987653
Q ss_pred ---------eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 230 ---------LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 230 ---------~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
+.++. -...++..+|+++|..+.|--.|..|-.||+.+
T Consensus 359 ~~~~~~~~vvaeve----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPE----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeec----cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22221 122356789999999999999999999999875
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=64.68 Aligned_cols=207 Identities=11% Similarity=0.204 Sum_probs=119.8
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCc
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~ 184 (335)
...|.=-++...+.+++-|+.-|.+.+++-..+....... ..+......+++...++|.|+..+.|.++.++.....+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3444444555667899999999999999976654332211 22334456788888899999999999999988732222
Q ss_pred eeeEEec--cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-eeeeeecccccCCCCceEEEEcCCCcEEEEEeCC
Q psy16316 185 FSNFKFA--AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261 (335)
Q Consensus 185 ~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d 261 (335)
. .+-.. ..+.+.|+++.|++++..+.+|...|+|.+-.+.+. .............++|..++.. ..+|...+.-
T Consensus 113 ~-~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 113 L-DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred c-eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence 2 22112 224678999999999999999999999988877762 1111111122234455555543 2233333322
Q ss_pred CcEEEEECCCCe--eEEEeCCCCCCCeEEEEeCCC-----CcEEEeeeceeEEecccccccccC
Q psy16316 262 GRIHIWNAEKGF--KVCVLDADHPSPVQTIQFNPK-----FNMMASACTNLAFWIPTYLSNHQE 318 (335)
Q Consensus 262 g~v~iwd~~~~~--~~~~~~~~h~~~v~~v~~sp~-----~~~~~s~~~~~~~w~~~~~~~~~~ 318 (335)
+..+++++... ++...+-.-+. -...+|-|. -..+.++==..|+|+.++.-++..
T Consensus 190 -r~~Lc~tE~eti~QIG~k~R~~~~-~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~ 251 (726)
T KOG3621|consen 190 -RCILCQTEAETITQIGKKPRKSLI-DFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIK 251 (726)
T ss_pred -hhheeecchhHHHHhcCCCcCCcc-ccceEEeeccccCCCceEEEecCCCceEEeecceeEEE
Confidence 34555554321 11111100011 123344443 234444444679998887666543
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.6e-05 Score=69.31 Aligned_cols=202 Identities=13% Similarity=0.192 Sum_probs=117.9
Q ss_pred CccEEEEEECC--CCCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEee---cCCCCeEEEEE
Q psy16316 21 TDKITSIDYSA--DGLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHAS---TKIDDTVRYLS 93 (335)
Q Consensus 21 ~~~V~~v~~s~--~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~i~~~~ 93 (335)
+..+.|+++.- +..+++.|..+|.|-+-....... .....++.-..+.++|.+.....++++ ...|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34466776654 445899999999999877654322 223334444567777766522222221 12467889999
Q ss_pred cCCC--ceE--eeecC-CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce-eEEEecCCcceEEECC-CCCEEEEE
Q psy16316 94 LHDN--KYI--RYFPG-HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ-GIMHVSGSRPIAAFDP-EGLIFGVG 166 (335)
Q Consensus 94 ~~~~--~~~--~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 166 (335)
+.++ .+. -.+.+ -....++++|..+.+++.+|...+.++++|++..... ..+.. ....-+.++| .++++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-hhcccceecCCCCCceecc
Confidence 9876 221 12222 4456779999988889999999999999999843211 11111 0122345666 66777655
Q ss_pred EcCCeEEEEE-ccCCCCCceeeEEe-ccCCCccceEEEEccCCCE-EEEEe-CCCeEEEEECC
Q psy16316 167 VNSDTIKLYD-VRSFDKGPFSNFKF-AAEKECDWTGIKFSADGKY-ILIST-NGSIIRTFDAY 225 (335)
Q Consensus 167 ~~d~~v~iwd-~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~-l~~~~-~~~~i~i~d~~ 225 (335)
.|+.+.+|| .+..+. ++..... .......+..++|.|..+- +++-+ +.++|+.||+.
T Consensus 215 -~dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 -SDGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -ccCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 489999999 443221 1111110 1111123567888886543 33333 44679999974
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.046 Score=49.58 Aligned_cols=266 Identities=15% Similarity=0.174 Sum_probs=154.8
Q ss_pred cEEEEEECCCCCE-EEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 23 KITSIDYSADGLL-LISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 23 ~V~~v~~s~~g~~-lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
....+.+.++|.. .++-.....+..-+...................+...+.... ++.....++.+.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccceee
Confidence 4556778888843 333333234554444311111111111122233444444433 34444457899999987777665
Q ss_pred eec-CCCCCeEEEEECCCCCEEEEeeC---CCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEEcCCeEEEEE
Q psy16316 102 YFP-GHTKKVNSLCLSPIDDTFISGSY---DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGVNSDTIKLYD 176 (335)
Q Consensus 102 ~~~-~H~~~V~~~~~~~~~~~l~s~s~---D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~v~iwd 176 (335)
... |. .-..+++.+++..+..+.. ++++.+.|..+.+..........-.-++++|+|..+ ++-..++++.+.|
T Consensus 111 ~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEe
Confidence 543 32 5568899999865544433 789999998887776654333222457899999854 4445789999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
........ ............-..+.++|++..+.+.... +.+...|..++......... ... .+..+.++|+|+
T Consensus 189 ~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 189 TSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGK 265 (381)
T ss_pred CCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCC
Confidence 76532110 0000001111112468999999988877655 48999999888765542111 111 345689999999
Q ss_pred EEEEEeC-CCcEEEEECCCCeeEEEeCCC--CCCCeEEEEeCCC
Q psy16316 254 YVISGST-DGRIHIWNAEKGFKVCVLDAD--HPSPVQTIQFNPK 294 (335)
Q Consensus 254 ~l~tgs~-dg~v~iwd~~~~~~~~~~~~~--h~~~v~~v~~sp~ 294 (335)
.+.+... .+.+.+-|..+.........+ -......+++.+.
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 8877744 488999998876655543221 1123555666554
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00049 Score=59.91 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=71.8
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCC-CEEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-LIFGVG 166 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 166 (335)
+++.+..+-+.++.+.+|...|..++|+|..+ ++..++.+++|++.|+++..+...+......-..+|+.+. .++-.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 55555555556677889999999999999876 7889999999999999987766555444444455676654 566677
Q ss_pred EcCCeEEEEEccCCC
Q psy16316 167 VNSDTIKLYDVRSFD 181 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~ 181 (335)
-..|.|.+||+|..+
T Consensus 255 l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEEccCCC
Confidence 789999999999754
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.03 Score=46.47 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=115.1
Q ss_pred CCEEEEecCCCeEEEEEccCCccee-eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKR-TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVN 111 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~ 111 (335)
..+++-||..+.++--|.++|.... ++.+.....+.+.. ++ ++..+...+.+.+.+++++..+..+..- +.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv---gd--fVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV---GD--FVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE---CC--EEEEEEccCcEEEEEecchhheeeeeeh-hhhc
Confidence 4578888888888888888887543 22222222222221 22 2344556788889999998666555432 2332
Q ss_pred -EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc-eEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeE
Q psy16316 112 -SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP-IAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188 (335)
Q Consensus 112 -~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~ 188 (335)
.....+++..+..|+.|+....-|.++..|+...+-.+..- .-.+.| ++.++++ .+.|.+.-....... ...+
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vlavt~~~~~---~~~~ 172 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKNPYS---STEF 172 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEEEEccCCCC---ccee
Confidence 33456788899999999999999999988877655444331 123455 4444443 344544433333211 1111
Q ss_pred EeccCCCccc--eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce-EEEEc-CCCcEEEEEeCCCcE
Q psy16316 189 KFAAEKECDW--TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL-EASFT-PDSKYVISGSTDGRI 264 (335)
Q Consensus 189 ~~~~~~~~~~--~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s-p~~~~l~tgs~dg~v 264 (335)
.......++ ..+.. +..+..++-||.+--++ +.|+.+.+... .+++. .-+-+ |..+.|..+..++-+
T Consensus 173 -w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t----~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~ 243 (354)
T KOG4649|consen 173 -WAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPAT----KGPIFMEPCESRPSCQQISLENENCFC 243 (354)
T ss_pred -hhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecC----CCceecccccCCCcceEEEEecCCeEE
Confidence 011111111 00111 23345555666666666 55555544321 11111 11122 555667777766655
Q ss_pred EEEEC
Q psy16316 265 HIWNA 269 (335)
Q Consensus 265 ~iwd~ 269 (335)
..-..
T Consensus 244 ~~~p~ 248 (354)
T KOG4649|consen 244 APLPI 248 (354)
T ss_pred Eeccc
Confidence 44443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.032 Score=51.08 Aligned_cols=185 Identities=18% Similarity=0.249 Sum_probs=101.3
Q ss_pred cccceEEEEecCCCeeEEee-cCCC-CeEEEEEcCCCceEe--eecCCCCCeEEEEECCCCCE-EEEeeCCCcEEEe--e
Q psy16316 63 KYGVDLIRFTHAKQAAIHAS-TKID-DTVRYLSLHDNKYIR--YFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLW--D 135 (335)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~~~d-~~i~~~~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~-l~s~s~D~~i~vW--d 135 (335)
...+...+|.++.......+ .... ..+.++++.+++..+ .++++.. .-+|+|+|+. +++...|+...+| |
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEc
Confidence 33444556666655432221 1112 458888988776544 3445444 5589999975 4566677776655 6
Q ss_pred cCCCCceeEEEecCCcceEEECCCCCEEEEEEc-CCe--EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE
Q psy16316 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN-SDT--IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
+.........+..+....-.|+|+|+.++-.++ .|. |.++|... ............. ..-.++|||++++.
T Consensus 269 l~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g---~~~~riT~~~~~~---~~p~~SpdG~~i~~ 342 (425)
T COG0823 269 LDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG---SQVTRLTFSGGGN---SNPVWSPDGDKIVF 342 (425)
T ss_pred CCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC---CceeEeeccCCCC---cCccCCCCCCEEEE
Confidence 665553332333333334578999988776543 343 44444433 1122222222111 13568999999998
Q ss_pred EeCC-C--eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 213 STNG-S--IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 213 ~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
.+.. + .|.+.|+.++...+.+..-.. ....+|.|+++.+...+.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~----~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILTSTYL----NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEcccccc----CCCCCcCCCCceEEEecc
Confidence 7632 3 366777766654444432111 123568888887655443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.079 Score=49.78 Aligned_cols=235 Identities=12% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccc----eEEEE--ecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCC
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV----DLIRF--THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH 106 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H 106 (335)
+..+..++.|+.+.-.|.++|+.+.......... ..+.- ....... +..+..++.+.-+|.++++.+-.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~-V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRK-VFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCe-EEEecCCCeEEEEECCCCCEeeeecCC
Confidence 4456677788999999999998776543322100 00000 0001022 223345889999999999887655432
Q ss_pred CCC-----eE-EEEECCCCCEEEEee---------CCCcEEEeecCCCCceeEEEecCC---------------------
Q psy16316 107 TKK-----VN-SLCLSPIDDTFISGS---------YDKTVRLWDLRSPNCQGIMHVSGS--------------------- 150 (335)
Q Consensus 107 ~~~-----V~-~~~~~~~~~~l~s~s---------~D~~i~vWd~~~~~~~~~~~~~~~--------------------- 150 (335)
... +. +..+. +..++.++ .++.+...|..+++..-.......
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 210 11 11222 23444443 468899999998876654432110
Q ss_pred -cceEEECCCCCEEEEEEcCC------------------eEEEEEccCCCCCceeeEEeccCCC---ccceEEEEc----
Q psy16316 151 -RPIAAFDPEGLIFGVGVNSD------------------TIKLYDVRSFDKGPFSNFKFAAEKE---CDWTGIKFS---- 204 (335)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~d~------------------~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~s---- 204 (335)
....++++.+..+..++.++ .+.-+|..+.+.. -.++...... .......+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~--W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK--WFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE--EEeeCCCCCCcccccCCCCeEEeccc
Confidence 01223444455566665443 6777777654321 1111110000 000000111
Q ss_pred cCCC---EEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE-----------------EeCCCcE
Q psy16316 205 ADGK---YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS-----------------GSTDGRI 264 (335)
Q Consensus 205 ~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t-----------------gs~dg~v 264 (335)
-++. .+++++.++.+..+|..+|+.+-...... ..++.+| +..++. ...+|.+
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 1233 57778889999999999998765543210 1123344 222221 1235778
Q ss_pred EEEECCCCeeEEEeC
Q psy16316 265 HIWNAEKGFKVCVLD 279 (335)
Q Consensus 265 ~iwd~~~~~~~~~~~ 279 (335)
.-.|..+|+.+...+
T Consensus 369 ~AlD~~tG~~~W~~~ 383 (488)
T cd00216 369 AALDPKTGKVVWEKR 383 (488)
T ss_pred EEEeCCCCcEeeEee
Confidence 888888887665544
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.047 Score=46.99 Aligned_cols=233 Identities=16% Similarity=0.172 Sum_probs=123.0
Q ss_pred CCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee--------
Q psy16316 31 ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-------- 102 (335)
Q Consensus 31 ~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-------- 102 (335)
..++.|+.|..+| +.+++.+.......+. +...+..+...+.-+..++.+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc---CCccEEEEchhhccccccccccccc
Confidence 4678899999998 8899983332222222 222366666666555544443 68999999865332221
Q ss_pred ------ecCCCCCeEEEE--ECCCCCEEEEeeCCCcEEEeecCCC-----CceeEEEecCCcceEEECCCCCEEEEEEcC
Q psy16316 103 ------FPGHTKKVNSLC--LSPIDDTFISGSYDKTVRLWDLRSP-----NCQGIMHVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 103 ------~~~H~~~V~~~~--~~~~~~~l~s~s~D~~i~vWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
.......+...+ -...+...+.+...++|.+|..... .....+........+.|. ++.++.|..+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 112234455555 1223444455556679999988653 233344445444455554 5666677654
Q ss_pred CeEEEEEccCCCCCceeeEEec-------cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFA-------AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
...+.|+.+....+....... .....+...+. -+++.+|++- +. +-+|=-..|+..+ .....-...
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~-~g~fv~~~G~~~r--~~~i~W~~~ 230 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DN-IGVFVNKNGEPSR--KSTIQWSSA 230 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cc-eEEEEcCCCCcCc--ccEEEcCCc
Confidence 577778875332211110000 00111222222 3345666543 22 3333334454333 111111223
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
+.++++. ..||+.-+.++ |.||++.++..++.+..
T Consensus 231 p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIPL 265 (275)
T ss_pred hhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEEC
Confidence 4556663 45777777655 99999999988777653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00042 Score=64.40 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=75.8
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe---eEE--
Q psy16316 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF---KVC-- 276 (335)
Q Consensus 202 ~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~---~~~-- 276 (335)
+++..+++++.|++-|.+++|+-..++....-.+. ..+.+..+..|++..++|.|+..|.|.++.+.+.. ...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccC--ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 46778999999999999999997776543222111 22334557889999999999999999999876532 111
Q ss_pred EeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 277 VLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 277 ~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
..+..|+..|++++|++++..+-+|+..
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCC
Confidence 2345588999999999999999999843
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.064 Score=49.36 Aligned_cols=228 Identities=12% Similarity=0.131 Sum_probs=106.2
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE-EcC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL-SLH 95 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~-~~~ 95 (335)
+....-..+.+.++|+|+.++. ..||.-.|+......... ........|...+. ++.. ...++|.++ +++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~--yAv~-~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR--YAVL-ESSSTIKIYKNFK 98 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE--EEEE--TTS-EEEEETTE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCcc--EEEE-ECCCeEEEEEcCc
Confidence 4445556889999999998888 456777788743222211 12234455665322 2222 226678775 443
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
... .+.++- ...+..+-. |.+|...+.+ .|.+||+.+++.+..+.... +..+.|++++.+++..+.+ ++.++
T Consensus 99 ~~~-~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 99 NEV-VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp E-T-T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ccc-ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEE
Confidence 222 112221 112333322 7766666544 89999999988777665443 3567899999999888654 66666
Q ss_pred EccCC------CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 176 DVRSF------DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 176 d~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
+.... +.+....+....+....+.+..|.-+ .++-.+.. .++. +.+|+.. .+.. .. .+..=+...
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~-ld--~~~yllgy~ 241 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAH-LD--KPLYLLGYL 241 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE--S--S--EEEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEE-cC--CceEEEEEE
Confidence 64321 11111122222232344566778755 55555555 6665 3344321 1111 11 122334556
Q ss_pred CCCcEEEEEeCCCcEEEEECC
Q psy16316 250 PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~ 270 (335)
|..+.+.....|+.|..+.+.
T Consensus 242 ~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 242 PKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTTEEEEE-TT--EEEEE--
T ss_pred ccCCEEEEEECCCCEEEEEEC
Confidence 655666666677777666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.084 Score=48.31 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=97.7
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcce----EEECCC
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPI----AAFDPE 159 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~----~~~~~~ 159 (335)
.|++|+.... .+..+.--.+.|.++.|+.+ ..|+....||+++++|+.... ...+ .......+ ..+...
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 4666665443 33333222278999999884 567778899999999986433 1111 11111111 112223
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCC-ceeeEEecc------CCCccce-EEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKG-PFSNFKFAA------EKECDWT-GIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~------~~~~~~~-~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
|-.+.+ .++.+.+ +...... ......... .....+. ...++.+....+....++.+.+.+....+.
T Consensus 139 GivvLt--~~~~~~~--v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 139 GIVVLT--GNNRFYV--VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CEEEEC--CCCeEEE--EeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 422222 2333322 2221110 000000000 0000111 123555566556656666666555433211
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+ ...+.+..+++||+++++|.-..+|++.+.+..-......+...-..+..++.|--+..
T Consensus 213 -i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 -I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1 12346788999999999999999999999876544444444333223444666655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=60.76 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=69.5
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc-eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP-LEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
.+.-+.|+|.-..+|.++.+|.+-+.... .+.+.++.-+ ...+ .+++|.|||+.||.|=.||+|++.|.+++..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p---~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP---GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC---CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 44568899999999999999988888776 4444444322 1222 48999999999999999999999999998876
Q ss_pred EEeCCCCCCCeEEEEeCC
Q psy16316 276 CVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 276 ~~~~~~h~~~v~~v~~sp 293 (335)
.....--...|..+-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 653222345677777764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.054 Score=49.85 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEE-EccCCCCCce
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY-DVRSFDKGPF 185 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw-d~~~~~~~~~ 185 (335)
.-...++.++|+++.++- +.||...++.....+. ... +......|.+.+ .+|+-..+++|+++ ++.... .
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~---k~~-G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~---~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN---KAF-GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV---V 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE---EEE-EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T---T
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc---ccc-CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc---c
Confidence 345679999999988777 5688888887332221 111 222234566644 46666668889986 332211 0
Q ss_pred eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 186 SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
..+.. ...+..+ |. |..|...+.+ .|.+||..+++.++++.. ..+..+.|++++.++|-.+.+ .++
T Consensus 103 k~i~~----~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 103 KSIKL----PFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp ---------SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred eEEcC----CcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEE
Confidence 11111 1111222 22 7777777555 899999999999888753 235789999999999999866 588
Q ss_pred EEECCCC---------e--eEEEeCCCCCCCeEEEEeCCC
Q psy16316 266 IWNAEKG---------F--KVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 266 iwd~~~~---------~--~~~~~~~~h~~~v~~v~~sp~ 294 (335)
|++.... . ....+. .-...|.+..|..+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED 207 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT
T ss_pred EEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC
Confidence 8775432 0 112221 11468888899876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.078 Score=44.71 Aligned_cols=208 Identities=16% Similarity=0.220 Sum_probs=103.5
Q ss_pred eeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.+.+.+-.+.++.++|+|+.. +++.....+.|.-.+.+ |+.++.+.-
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l------------------------------- 61 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL------------------------------- 61 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------------------------------
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-------------------------------
Confidence 356778777899999999754 67777777777666653 443333211
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC----ce--eEEEe--c--C--CcceEEECCCC
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN----CQ--GIMHV--S--G--SRPIAAFDPEG 160 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~----~~--~~~~~--~--~--~~~~~~~~~~~ 160 (335)
.| .+..-.+++..++.++++--.++.+.+.++.... .. ..+.. . + ....+++++.+
T Consensus 62 -----------~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~ 129 (248)
T PF06977_consen 62 -----------DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT 129 (248)
T ss_dssp -----------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT
T ss_pred -----------CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC
Confidence 11 1344566666666666665557777777773221 11 11111 1 1 12456788877
Q ss_pred CEEEEEEcCCeEEEEEccCCCCC-ceeeEEe-----ccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKG-PFSNFKF-----AAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
+.+.++-...-..+|.++..... ....... .......+.+++++|... +++.+..++.+..+| .+|+.+..+
T Consensus 130 ~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 130 NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 66666666666777776541111 1110000 011223467899998754 555677778888888 666655544
Q ss_pred cccc------cCCCCceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 234 AGFL------NNKGCPLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 234 ~~~~------~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
.-.. .....+-.++|.|+|+++++. +-...++|
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 3111 122345679999999766654 55555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=53.50 Aligned_cols=106 Identities=13% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCC-CCeE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT-KKVN 111 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~~V~ 111 (335)
+.-++.|+.||.|.+|+...-..+..........-.+-++......+.+.+..|+.||.|++...+.+...-.|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 346788889999999987632221111111111222223333333466677789999999999988887777777 5565
Q ss_pred EEEECCCCCEEEEe--eCCCcEEEeecCC
Q psy16316 112 SLCLSPIDDTFISG--SYDKTVRLWDLRS 138 (335)
Q Consensus 112 ~~~~~~~~~~l~s~--s~D~~i~vWd~~~ 138 (335)
.......+..+..+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555566666666 6777777777654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.07 Score=47.15 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=92.7
Q ss_pred eEEEEEcCCCceEeeecCC-CCCeE---EEEECCC----CCEEEEeeC----------CCcEEEeecCCC-----CceeE
Q psy16316 88 TVRYLSLHDNKYIRYFPGH-TKKVN---SLCLSPI----DDTFISGSY----------DKTVRLWDLRSP-----NCQGI 144 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H-~~~V~---~~~~~~~----~~~l~s~s~----------D~~i~vWd~~~~-----~~~~~ 144 (335)
.+++.|..+.+.+..++-. ...+. .+.+..+ ..+++-|.. .|.|.++++... +...+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4566666665555443211 12233 3344432 345554433 288999999873 22211
Q ss_pred --EEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 145 --MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
....+.+ .++.+-+..++++ .++.+.+|++.... ........ .......+....++++++|..-+.+.++
T Consensus 83 ~~~~~~g~V--~ai~~~~~~lv~~-~g~~l~v~~l~~~~--~l~~~~~~---~~~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 83 HSTEVKGPV--TAICSFNGRLVVA-VGNKLYVYDLDNSK--TLLKKAFY---DSPFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEESS-E--EEEEEETTEEEEE-ETTEEEEEEEETTS--SEEEEEEE----BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEeecCcc--eEhhhhCCEEEEe-ecCEEEEEEccCcc--cchhhhee---cceEEEEEEeccccEEEEEEcccCEEEE
Confidence 2233333 2333324444444 35799999998643 12221111 1122334455557799999887777777
Q ss_pred ECCC-CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 223 DAYN-GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 223 d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.... ...+..+..-. ....+.++.|-++++.++.+..+|.+.++...
T Consensus 155 ~~~~~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4332 23233333211 23346778887777799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.022 Score=51.86 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=85.2
Q ss_pred EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCE-------EEEEEcCCeEEEEEccCCCCCceeeEEeccC
Q psy16316 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI-------FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 121 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
+|.++..-..++--|+..++.+........++++.+.|+.+. =.+|-.++.|.-||+|-... .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~--------- 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-N--------- 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-c---------
Confidence 466677778889999999988887777666666666665431 12344556666666652100 0
Q ss_pred CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
.|+.. .+ +.+ .. .....|.+-.. ..++|.||.+|.|++||- .+.
T Consensus 418 ---------------kl~~~------------q~---kqy---~~-k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~ 461 (644)
T KOG2395|consen 418 ---------------KLAVV------------QS---KQY---ST-KNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGR 461 (644)
T ss_pred ---------------eeeee------------ec---ccc---cc-ccccceeeecC-CceEEEeecCCcEEeehh-hhh
Confidence 00000 00 000 00 11112223222 358999999999999997 454
Q ss_pred eEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEe
Q psy16316 274 KVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW 308 (335)
Q Consensus 274 ~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w 308 (335)
+..+.-.+-..+|..|..+.+|+.++..+.+..+-
T Consensus 462 ~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 462 RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred hhhhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 44443345678999999999999877776554333
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.22 Score=47.69 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCeEEEEECCCCCEEEEee------CCC--cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCe-EEEEEcc
Q psy16316 108 KKVNSLCLSPIDDTFISGS------YDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDT-IKLYDVR 178 (335)
Q Consensus 108 ~~V~~~~~~~~~~~l~s~s------~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-v~iwd~~ 178 (335)
..+.+.+++|+|+.++..- .|. .|.+++... .. ..+........-.|+|+|..+.+...... +++.+-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678999999998876655 244 444445422 22 22222222344579999876666543312 2222111
Q ss_pred CCCCCceeeEEec-----cCCCccceEEEEccCCCEEEEEeCCCeEEE---EECCCCeeeeeeccc----ccCCCCceEE
Q psy16316 179 SFDKGPFSNFKFA-----AEKECDWTGIKFSADGKYILISTNGSIIRT---FDAYNGQCLQTLAGF----LNNKGCPLEA 246 (335)
Q Consensus 179 ~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i---~d~~~~~~~~~~~~~----~~~~~~v~~~ 246 (335)
. .......... ......+..+.|||||..++.... +.|++ -....|+ .++... ......+..+
T Consensus 428 ~--~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 428 A--TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred C--CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCc--eeecccEEeecccCCccccc
Confidence 0 0011000000 011235788999999999988764 56666 4444453 222111 1111224678
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECC-CCeeEEEeCC-CCCCCeEEEEeCCCCcEEEe
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDA-DHPSPVQTIQFNPKFNMMAS 300 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~-~h~~~v~~v~~sp~~~~~~s 300 (335)
+|.+++.++ ++..++.-.+|.+. .|.....+.. ....++..|+=+|+ .++++
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~ 556 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVT 556 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEE
Confidence 999998854 55555655566543 2333222221 13567778887764 44443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.23 Score=44.28 Aligned_cols=272 Identities=12% Similarity=0.044 Sum_probs=110.3
Q ss_pred EECCCCCEEEEec-CCCeEEE--EEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 28 DYSADGLLLISCS-EDDQIVI--YDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 28 ~~s~~g~~lasgs-~Dg~i~l--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
.|.+||+.|+-+| .||.-.+ -|+++++..+--.+..........++.....+..- .+..++-.|+.+.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~--~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK--NGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE--TTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE--CCCeEEEEECCcCcEEEEEE
Confidence 4678997655554 4655544 47777665443222212122233445544433332 24577888998887766666
Q ss_pred CCCCCeEEEEEC--CCCCEEEEeeC---C-------------------CcEEEeecCCCCceeEEEecCCcceEEECC-C
Q psy16316 105 GHTKKVNSLCLS--PIDDTFISGSY---D-------------------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-E 159 (335)
Q Consensus 105 ~H~~~V~~~~~~--~~~~~l~s~s~---D-------------------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (335)
....-+-...|. .++..++-.-. | ..|..-|+.+++...++....=..-+.++| +
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 555555444443 34444433211 1 112223344443322222111111123445 3
Q ss_pred CCEEEEEEc---CC-eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE--eC---CCeEEEEECCCCeee
Q psy16316 160 GLIFGVGVN---SD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS--TN---GSIIRTFDAYNGQCL 230 (335)
Q Consensus 160 ~~~~~~~~~---d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~---~~~i~i~d~~~~~~~ 230 (335)
..++.-|-. +. .-+||-++.-.+ ....+.... ....+..=-|.|||..+..- .. +..|.-+|+.+++..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 444444432 22 236676664221 111111111 11111222489999877642 22 335778888887643
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCC----------------cEEEEECCCCeeEEEeC--------CCCCC-C
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDG----------------RIHIWNAEKGFKVCVLD--------ADHPS-P 285 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg----------------~v~iwd~~~~~~~~~~~--------~~h~~-~ 285 (335)
..... . .....--++||+++|-=+.|. -|++++...+....... .+|.. .
T Consensus 278 ~~~~~----p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~ 352 (386)
T PF14583_consen 278 RLMEM----P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVT 352 (386)
T ss_dssp EEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT
T ss_pred EEEeC----C-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccC
Confidence 22111 1 122355678888876644442 46778887664322110 10000 0
Q ss_pred eEEEEeCCCCcEEEeee---ceeEEe
Q psy16316 286 VQTIQFNPKFNMMASAC---TNLAFW 308 (335)
Q Consensus 286 v~~v~~sp~~~~~~s~~---~~~~~w 308 (335)
=..+.|+||++.++-.+ +...+|
T Consensus 353 hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 353 HPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCCccCCCCCEEEEECCCCCCccEE
Confidence 13579999999877665 344555
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.044 Score=53.53 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=63.8
Q ss_pred EEEEEeCCCeEEEEECCCCe--eeee-ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCC
Q psy16316 209 YILISTNGSIIRTFDAYNGQ--CLQT-LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285 (335)
Q Consensus 209 ~l~~~~~~~~i~i~d~~~~~--~~~~-~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~ 285 (335)
..++|-++..+..||++-.. ++.. .... .......+++-+.+ .+||.||.+|.||+||- .|.+..+.-.+-..|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCC
Confidence 34567778889999988532 2211 1111 12233455555555 48999999999999995 344433332345689
Q ss_pred eEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 286 VQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 286 v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
|..|..+.+|++++..|. .+.+...
T Consensus 621 I~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecceEEEEEE
Confidence 999999999998776665 4555443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.27 Score=42.99 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=81.5
Q ss_pred EECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc
Q psy16316 114 CLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA 192 (335)
Q Consensus 114 ~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 192 (335)
.|.++.. ++++--..+.|.-||..+++...............++..+.++++. .-+.+++..... ....+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~---~g~~~~~~~~~~--~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE---HGVRLLDPDTGG--KITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc---cccEEEeccCCc--eeEEecccc
Confidence 3555544 5556566778888887765544333333333445566666665533 334555553211 101111111
Q ss_pred --CCCccceEEEEccCCCEEEEEeC-----------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 193 --EKECDWTGIKFSADGKYILISTN-----------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 193 --~~~~~~~~~~~s~~~~~l~~~~~-----------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
......+.....|+|.+.+.... .+.++.+|. .+...+.+.. +...+..++||||++.|....
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~---~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD---DLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC---cEEecCceEECCCCCEEEEEe
Confidence 11123467889999998776554 133555554 4544444433 233455799999997655554
Q ss_pred -CCCcEEEEECC
Q psy16316 260 -TDGRIHIWNAE 270 (335)
Q Consensus 260 -~dg~v~iwd~~ 270 (335)
..+.|+.|+..
T Consensus 182 T~~~~i~r~~~d 193 (307)
T COG3386 182 TPANRIHRYDLD 193 (307)
T ss_pred CCCCeEEEEecC
Confidence 45788888775
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.29 Score=43.21 Aligned_cols=175 Identities=13% Similarity=0.142 Sum_probs=97.3
Q ss_pred CeEEEEEcCCC----ceEeee--cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEEEecCCcceEEECCC
Q psy16316 87 DTVRYLSLHDN----KYIRYF--PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHVSGSRPIAAFDPE 159 (335)
Q Consensus 87 ~~i~~~~~~~~----~~~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~ 159 (335)
|.+.++++... ..++.+ ....++|.+++-- .+. |+.+ ..+.|.+|++...+ ............+..+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 78999999874 222222 2346889999766 333 4444 35889999998877 4444333333355555556
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC-------Ce-eee
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN-------GQ-CLQ 231 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-------~~-~~~ 231 (335)
++++++|...+.+.++..+.. ......... ......+.++.|-++++.++++..++.+.++.... +. .+.
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~-~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEE-NNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETT-TE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred ccEEEEEEcccCEEEEEEEcc-CCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 778888888788887755431 111222111 11133456777876667899999999999887642 11 222
Q ss_pred eecccccCCCCceEE---EEcC--CC------cEEEEEeCCCcEEEE
Q psy16316 232 TLAGFLNNKGCPLEA---SFTP--DS------KYVISGSTDGRIHIW 267 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~---~~sp--~~------~~l~tgs~dg~v~iw 267 (335)
....+. ....+.++ .+.| .+ ..++-++.+|.|...
T Consensus 217 ~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 217 RISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 222211 12334444 4444 12 247777888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.4 Score=43.00 Aligned_cols=264 Identities=15% Similarity=0.168 Sum_probs=131.6
Q ss_pred CCCCCEEEEe---------cCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 30 SADGLLLISC---------SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 30 s~~g~~lasg---------s~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
|||+++++.. +..+...|||+++++.... ......+....|+|++...+++. ++.+.+.++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-~~~~~~~~~~~~sP~g~~~~~v~---~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-TPPPPKLQDAKWSPDGKYIAFVR---DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-S-EETTBSEEEE-SSSTEEEEEE---TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-cCCccccccceeecCCCeeEEEe---cCceEEEECCCCCeE
Confidence 6788876653 2357889999998754432 22255678889999977665554 678888888777555
Q ss_pred eeec-C-------C---------CCCeEEEEECCCCCEEEEeeC-CCcEEEeecC---CCCc--eeEEEecCCcceEEEC
Q psy16316 101 RYFP-G-------H---------TKKVNSLCLSPIDDTFISGSY-DKTVRLWDLR---SPNC--QGIMHVSGSRPIAAFD 157 (335)
Q Consensus 101 ~~~~-~-------H---------~~~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~---~~~~--~~~~~~~~~~~~~~~~ 157 (335)
+... | - -+.-..+-|+|+++.|+.... +..|+.+.+- .... ..... ..+.
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~-------~~YP 149 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES-------IRYP 149 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE-------EE--
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc-------cccC
Confidence 4322 2 0 122357789999998888764 4555554432 1110 01111 1111
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec---cCCCccceEEEEccCCCEEEEE-e-CC---CeEEEEECCCCee
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA---AEKECDWTGIKFSADGKYILIS-T-NG---SIIRTFDAYNGQC 229 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~-~-~~---~~i~i~d~~~~~~ 229 (335)
..|.--.. -.+.++|+.+.... ..... .....-+..+.|.+++..|++. . .+ ..+.++|..++.+
T Consensus 150 k~G~~np~----v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 150 KAGDPNPR----VSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp BTTS---E----EEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred CCCCcCCc----eEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 11111010 14566777653322 11111 1223345678999999944433 2 22 2466778877655
Q ss_pred eeeeccccc-CCCCceEEEEc-CCCc-EEEEEeCCCcEEEE--ECCCCeeEEEeCCCCCCCeEE-EEeCCCCcEE-Eeee
Q psy16316 230 LQTLAGFLN-NKGCPLEASFT-PDSK-YVISGSTDGRIHIW--NAEKGFKVCVLDADHPSPVQT-IQFNPKFNMM-ASAC 302 (335)
Q Consensus 230 ~~~~~~~~~-~~~~v~~~~~s-p~~~-~l~tgs~dg~v~iw--d~~~~~~~~~~~~~h~~~v~~-v~~sp~~~~~-~s~~ 302 (335)
......... -........|. +++. +|.....||.-+|+ +...+. ...+.. ..-.|.. +.|++++..+ .++.
T Consensus 223 ~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 223 RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS-GDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEES
T ss_pred eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc-CceeecccceEcCCCCEEEEEec
Confidence 333322111 11112245554 6554 55555567765554 555444 333432 2345644 6778886543 2332
Q ss_pred ----ceeEEeccccc
Q psy16316 303 ----TNLAFWIPTYL 313 (335)
Q Consensus 303 ----~~~~~w~~~~~ 313 (335)
..-.+|..+..
T Consensus 301 ~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 301 GDNPGERHLYRVSLD 315 (353)
T ss_dssp SGGTTSBEEEEEETT
T ss_pred CCCCCceEEEEEEeC
Confidence 23466655444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.13 Score=37.12 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=42.7
Q ss_pred eEEEEECC---CC-CEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 110 VNSLCLSP---ID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 110 V~~~~~~~---~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
|+++++.+ +| +.|+.||.|..||+|+-. .....+........+. .-.+..|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~-~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLC-SLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEE-EcCCCEEEEEecCCEEEEEeC
Confidence 56666554 33 689999999999999743 3444443333322222 223367899999999999975
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.31 Score=41.14 Aligned_cols=126 Identities=18% Similarity=0.104 Sum_probs=68.4
Q ss_pred cccceeeec-cCCccEEEEEECCCCCEEEEecCCC--eEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeecCC
Q psy16316 10 SYKVAKLFR-ENTDKITSIDYSADGLLLISCSEDD--QIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 10 ~~~~~~~~~-~h~~~V~~v~~s~~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.|++.+.|. ........+.|..+|.++-|.|.-| .|+.+|+++++......-.. .-...++.. ++..... +=.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qL-TWk 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQL-TWK 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEE-ESS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEE-Eec
Confidence 467777765 3455677888888899888888766 78889999987654432211 111111111 1122222 223
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 141 (335)
++...+||..+-+.+..++- .+.=+.++ .++..|+.......+.++|..+.+.
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred CCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 66777888877776666542 23334555 3344454444456677777665443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.5 Score=43.37 Aligned_cols=247 Identities=14% Similarity=0.105 Sum_probs=118.9
Q ss_pred cEEEEEECCCCCEEEEe-c----CCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC---------CCe
Q psy16316 23 KITSIDYSADGLLLISC-S----EDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI---------DDT 88 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasg-s----~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~ 88 (335)
.+....+||||+++|-+ + ...++++.|+++++......... ....+.|.+++...+...-.. ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44468899999987733 3 33569999999997655432221 122388888877665554332 345
Q ss_pred EEEEEcCCCce--EeeecCCCCC--eEEEEECCCCCEEEE-eeC--C-CcEEEeecCCC----CceeEEEe--cCCcceE
Q psy16316 89 VRYLSLHDNKY--IRYFPGHTKK--VNSLCLSPIDDTFIS-GSY--D-KTVRLWDLRSP----NCQGIMHV--SGSRPIA 154 (335)
Q Consensus 89 i~~~~~~~~~~--~~~~~~H~~~--V~~~~~~~~~~~l~s-~s~--D-~~i~vWd~~~~----~~~~~~~~--~~~~~~~ 154 (335)
|.+|.+.+... ...+++.... ...+..++++++|+- .+. + ..+.+-|+..+ .....+.. .+....+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 77888876533 3455554433 568888999987653 333 2 45777787764 11222221 1111112
Q ss_pred EECCCCCEEEEEE---cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCCC--eEEEEECCCCe
Q psy16316 155 AFDPEGLIFGVGV---NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGS--IIRTFDAYNGQ 228 (335)
Q Consensus 155 ~~~~~~~~~~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~--~i~i~d~~~~~ 228 (335)
... .+.+++... ..+.|...++...........-........+..+ ...+.+|+.. ..++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE--EEECCEEEEEEEECCccEEEEEECCCCc
Confidence 111 232333221 2245555565543221112111111111123333 3344455543 3333 48888888333
Q ss_pred eeeeecccccCCCCceEEEEcCCCc-EEEEEeC---CCcEEEEECCCCeeE
Q psy16316 229 CLQTLAGFLNNKGCPLEASFTPDSK-YVISGST---DGRIHIWNAEKGFKV 275 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~---dg~v~iwd~~~~~~~ 275 (335)
....+... ..+.+..+...+++. +.++-+. -.+++.||+.++...
T Consensus 361 ~~~~~~~p--~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLP--EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESS--SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCC--cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33333221 122233444444443 2233222 245777787777544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.38 Score=43.17 Aligned_cols=215 Identities=13% Similarity=0.128 Sum_probs=110.5
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec------------------
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS------------------ 148 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~------------------ 148 (335)
+...++|+.+++....... ...+....|+|+|+.++-.. ++.|.++++.++....+...+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred eeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 4677889998776554443 67788999999999988885 688999998766332221111
Q ss_pred CCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy16316 149 GSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG 227 (335)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~ 227 (335)
+....+.|+|+++.++... ++..|+.+.+........ .--.+..+.+-.-|.-- ..-.+.++|+.++
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~ 168 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------QYPEVESIRYPKAGDPN----PRVSLFVVDLASG 168 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------SS-EEEEEE--BTTS-------EEEEEEEESSST
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------cCCcccccccCCCCCcC----CceEEEEEECCCC
Confidence 1224578999999888754 334444444322111000 00011122222222111 1124677888877
Q ss_pred eeeeeec---ccccCCCCceEEEEcCCCcEEEE--EeCCC---cEEEEECCCCeeEEEeCCCCCCCe---EEEEeC-CCC
Q psy16316 228 QCLQTLA---GFLNNKGCPLEASFTPDSKYVIS--GSTDG---RIHIWNAEKGFKVCVLDADHPSPV---QTIQFN-PKF 295 (335)
Q Consensus 228 ~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~t--gs~dg---~v~iwd~~~~~~~~~~~~~h~~~v---~~v~~s-p~~ 295 (335)
+... +. ........+..+.|.++++.|+. -+.+. .+.++|..++...........++| ....|. +++
T Consensus 169 ~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~ 247 (353)
T PF00930_consen 169 KTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG 247 (353)
T ss_dssp CCCE-E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS
T ss_pred cEEE-eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC
Confidence 6432 22 11233445778999999983333 33333 366678776643332222233443 255554 665
Q ss_pred cEEE-ee--eceeEEecccccccc
Q psy16316 296 NMMA-SA--CTNLAFWIPTYLSNH 316 (335)
Q Consensus 296 ~~~~-s~--~~~~~~w~~~~~~~~ 316 (335)
..++ .. ++--+++..+...+.
T Consensus 248 ~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 248 NEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp SEEEEEEETTSSEEEEEEETTSSE
T ss_pred CEEEEEEEcCCCcEEEEEcccccc
Confidence 4433 22 234566655444444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.33 Score=43.82 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=75.1
Q ss_pred eEEECCCCCEEEEEE-----------cCC-eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 153 IAAFDPEGLIFGVGV-----------NSD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~-----------~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
.++++++|+++++-. ..+ .|.+++-............+. +.-....++++.+++ |+++......+
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~G--lyV~~~~~i~~ 94 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVGG--VYVATPPDILF 94 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecCC--EEEeCCCeEEE
Confidence 356777777776642 112 565554332222111111111 112233678999988 44555554444
Q ss_pred EEECCCC-----eeeeeeccccc----CCCCceEEEEcCCCcEEEEEeCC-------------------CcEEEEECCCC
Q psy16316 221 TFDAYNG-----QCLQTLAGFLN----NKGCPLEASFTPDSKYVISGSTD-------------------GRIHIWNAEKG 272 (335)
Q Consensus 221 i~d~~~~-----~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~tgs~d-------------------g~v~iwd~~~~ 272 (335)
+.|.... +....+.+... +...+..+.|.|||.+.++-+.. |.|..++...+
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 5454321 11112222211 12335678999999977665521 44666666544
Q ss_pred eeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 273 FKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 273 ~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.. ..+..++.. .+.++|+|+|.++++-.
T Consensus 175 ~~-e~~a~G~rn-p~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 175 KL-RVVAHGFQN-PYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eE-EEEecCcCC-CccceECCCCCEEEEcc
Confidence 33 333344433 36899999999887654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=57.31 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
.+..++.|++.|.+-..|+... ...+........++++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n----L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN----LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc----cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3446778888888888887541 111122233445789999999999999999999999999999988888876655
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
....+.-+.+..++..+.++...|. +|+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 5555566666666777888888886 554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.63 Score=42.64 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=105.3
Q ss_pred EEEECCCCCEEEEecCC-----------CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 26 SIDYSADGLLLISCSED-----------DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~D-----------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
-++.+|.|..+|...++ ..|+||+.. |+.+..+.-....+-...|...... ++.. .||.++++|+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~L-vvV~--~dG~v~vy~~ 108 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEEL-VVVQ--SDGTVRVYDL 108 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeE-EEEE--cCCEEEEEeC
Confidence 35667888777777555 158888864 4444444333356666777664333 3333 4899999998
Q ss_pred CCCceEeeec--CCCCCe-----EEEEECCCCCEEEEeeCCCcEEEe-ecCCCCceeEE-Ee---------cCC-cceEE
Q psy16316 95 HDNKYIRYFP--GHTKKV-----NSLCLSPIDDTFISGSYDKTVRLW-DLRSPNCQGIM-HV---------SGS-RPIAA 155 (335)
Q Consensus 95 ~~~~~~~~~~--~H~~~V-----~~~~~~~~~~~l~s~s~D~~i~vW-d~~~~~~~~~~-~~---------~~~-~~~~~ 155 (335)
.... ...+. .....| ....+..+|-.+++++ +.+.+- +.......... .. ... .....
T Consensus 109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~--~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN--NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred CCce-eechhhhccccCcccccccccccCCCCEEEECCC--CeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6433 11111 111122 2223333443444432 223222 22211010000 00 000 00122
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
+..+....+....++.+.+.+-.... ......++..|++||+++++|.-+.++.+.+.+..-.+...++..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~---------~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK---------QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc---------cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 33444444444555566544432210 011234678899999999999999999998887665555444432
Q ss_pred cccCCCCceEEEEcCCC
Q psy16316 236 FLNNKGCPLEASFTPDS 252 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~ 252 (335)
. ....+..+.|.-+.
T Consensus 257 ~--~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 257 D--SKSPPKQMAWCGND 271 (410)
T ss_pred C--cCCCCcEEEEECCC
Confidence 1 22345566666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=35.31 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
..+..++|+|...+||.|+.||.|.++.+ ++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 45778999999999999999999999998 4443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.71 Score=41.26 Aligned_cols=234 Identities=16% Similarity=0.163 Sum_probs=101.3
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEee----------------------c
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS----------------------T 83 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 83 (335)
....+|+.+.++=...+.+++--|+++.+..........-+....|..+.+...++. +
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 445567777665444556778888888765433333333333344433222222211 1
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEE-e---eCCCc-EEEeecCCCCce-eEE--EecCC-cceE
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFIS-G---SYDKT-VRLWDLRSPNCQ-GIM--HVSGS-RPIA 154 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s-~---s~D~~-i~vWd~~~~~~~-~~~--~~~~~-~~~~ 154 (335)
.....|.-.|+.+++....+. -+.-+..+.|+|.+..++. | -+|.. -|+|=+++.... ..+ +..+. ..--
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 113345556777776555444 3455678889997654444 3 34552 478876543211 111 11111 1113
Q ss_pred EECCCCCEEEE-EE----cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-------------
Q psy16316 155 AFDPEGLIFGV-GV----NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG------------- 216 (335)
Q Consensus 155 ~~~~~~~~~~~-~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~------------- 216 (335)
.|.|+|..+.- +. .+..|.-+|+.+.+. ..+.. .+ ....+-.++||++++.-+.|
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~---~~~~~-~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER---RRLME-MP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--E---EEEEE-E----SEEEEEE-TTSSEEEEEE---------------
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCc---eEEEe-CC---ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 57888875543 22 233455566654321 11110 11 12345568899988753332
Q ss_pred ---CeEEEEECCCCeeeeeecccc------cCCC--CceEEEEcCCCcEEE-EEeCCCcEEEEE
Q psy16316 217 ---SIIRTFDAYNGQCLQTLAGFL------NNKG--CPLEASFTPDSKYVI-SGSTDGRIHIWN 268 (335)
Q Consensus 217 ---~~i~i~d~~~~~~~~~~~~~~------~~~~--~v~~~~~sp~~~~l~-tgs~dg~v~iwd 268 (335)
..|+++++..++.. .+..|. .+.. .-....|+||+++++ +....|...||=
T Consensus 317 ~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ----EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 25677888776542 222221 0000 112479999999755 455577776663
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.29 Score=35.41 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=51.8
Q ss_pred EEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC
Q psy16316 27 IDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG 105 (335)
Q Consensus 27 v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 105 (335)
..|..|| +.|+.||.|..||+|+-+ +....+.. ...+..+.-.... .++.+..+|+|-+|+-.... -+ .+.
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~~~Rl-WR-iKS 79 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGG---RFAYALANGTVGVYDRSQRL-WR-IKS 79 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCC---EEEEEecCCEEEEEeCccee-ee-ecc
Confidence 3445565 479999999999999854 22222221 2333333333222 23344457788777643221 11 111
Q ss_pred CCCCeEEEEECC---CC-CEEEEeeCCCcEE
Q psy16316 106 HTKKVNSLCLSP---ID-DTFISGSYDKTVR 132 (335)
Q Consensus 106 H~~~V~~~~~~~---~~-~~l~s~s~D~~i~ 132 (335)
+..+.++++.. +| ..|++|=.+|.|-
T Consensus 80 -K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 -KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22355665543 23 4688887788764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.022 Score=34.33 Aligned_cols=30 Identities=13% Similarity=0.396 Sum_probs=27.8
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEc
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDC 50 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~ 50 (335)
...|.++.|+|...++|.|..||.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 346999999999999999999999999988
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.011 Score=48.15 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=76.8
Q ss_pred EEEEeeCCCcEEEeecCCCCc--eeE-EEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCcc
Q psy16316 121 TFISGSYDKTVRLWDLRSPNC--QGI-MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197 (335)
Q Consensus 121 ~l~s~s~D~~i~vWd~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (335)
.|..-|.|+.|+=.+++..+. ... ++..+ ...-....-+++|+.++.|.+|...-... ....... .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~s-~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVCS-GEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc----eeecccCceEEeecccceEEEecCCccch--HHHhhhc-ccccc
Confidence 456667899998888764321 111 11111 11122345677899999999998763211 1000000 00111
Q ss_pred ceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE--eCCCcEEEEECC
Q psy16316 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG--STDGRIHIWNAE 270 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg--s~dg~v~iwd~~ 270 (335)
...+....++.+..++..++.|+.|++.-.+.+.....|.. .+......+..+++++.. |.|..++.|++.
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~--~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF--ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccC--CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 12334445566788889999999999876665544433321 223334444455566666 666666666664
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.34 Score=44.45 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=86.6
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC--EE-----EEeeCCCcEEEeecCCCCce--eEEE-e-
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TF-----ISGSYDKTVRLWDLRSPNCQ--GIMH-V- 147 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l-----~s~s~D~~i~vWd~~~~~~~--~~~~-~- 147 (335)
++.++.....+.-.|++.|+.+...+-|.+ |+-+.+.|+.. +| +-|-.|+.|.-||.|-.... ...+ .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 444555566777889999999999987777 77788888742 22 34667999999999843221 1111 1
Q ss_pred ---cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC
Q psy16316 148 ---SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224 (335)
Q Consensus 148 ---~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~ 224 (335)
...-.+.+-.. .-++++|+.+|-|++||--. .. ... ..+..-.++..+..+.+|+++++.+ +..+.+.++
T Consensus 427 y~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~-~~-AKT---AlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIG-RR-AKT---ALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccccceeeecC-CceEEEeecCCcEEeehhhh-hh-hhh---cccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 11112222222 34788999999999998421 11 011 1122334567789999999988765 455666664
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.029 Score=55.26 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCC
Q psy16316 206 DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285 (335)
Q Consensus 206 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~ 285 (335)
.+..++++++.+.+...|+... +..+..-....+.+.+++|+-+|+.++.|-.+|.|.+||+..+.....+. .|..|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence 4556788888888888887643 12121122234678899999999999999999999999998876655543 23334
Q ss_pred ---eEEEEeCCCCcEEEeeeceeEEecccccc
Q psy16316 286 ---VQTIQFNPKFNMMASACTNLAFWIPTYLS 314 (335)
Q Consensus 286 ---v~~v~~sp~~~~~~s~~~~~~~w~~~~~~ 314 (335)
|-.+.+..++..+.+++....+|+..+.+
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCceEEEEech
Confidence 33444455666788888777789876655
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.58 Score=42.52 Aligned_cols=230 Identities=10% Similarity=0.055 Sum_probs=99.8
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc--------ccceEEEEe-----cCCC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK--------YGVDLIRFT-----HAKQ 76 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~ 76 (335)
-|.+...++..+++|++++.|. =..+|.|..+|++.|-|+.....+..-...+ ..+..+.|. .+..
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 4778888888899999999974 4589999999999999997655443311111 123344443 1111
Q ss_pred -eeEEeecCCCCeEEEEEcCC---CceEeeec----CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE-E-E
Q psy16316 77 -AAIHASTKIDDTVRYLSLHD---NKYIRYFP----GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI-M-H 146 (335)
Q Consensus 77 -~~~~~~~~~d~~i~~~~~~~---~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~-~ 146 (335)
...+..+...|.+.+|.+.. +.....+. .|.++|..+ ...|..++....- . .
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISA 215 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhH
Confidence 12222333346666665431 11111110 111111111 1223222221100 0 0
Q ss_pred ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEE-----ccCCCEEEEEeCCCeEEE
Q psy16316 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKF-----SADGKYILISTNGSIIRT 221 (335)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~~~~~~~i~i 221 (335)
+.+...-. .-.-+++......++++...+.+ . ..+.. +.......+.+ ...+..|++-..+|.+++
T Consensus 216 ~~~l~~g~----~i~g~vVvvSe~~irv~~~~~~k--~--~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 216 MQGLSKGI----SIPGYVVVVSESDIRVFKPPKSK--G--AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp HHGGGGT--------EEEEEE-SSEEEEE-TT-----E--EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred hhccccCC----CcCcEEEEEcccceEEEeCCCCc--c--cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 00000000 00112333456788998775421 1 11111 11112223344 235667888889999999
Q ss_pred EECCCCeeeeeeccccc-CCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 222 FDAYNGQCLQTLAGFLN-NKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 222 ~d~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
|.+...+.+..+.-... ........+|+++|..++-.|.. .+.++.
T Consensus 287 ~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp EETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred EECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEE
Confidence 99999887766543211 11112346788888877666543 344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.98 Score=39.66 Aligned_cols=263 Identities=12% Similarity=0.105 Sum_probs=136.6
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCCCceEee--ecC-CCC---
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHDNKYIRY--FPG-HTK--- 108 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~--~~~-H~~--- 108 (335)
+.+.|.|.++++.+..+...-. ..+..++++.....+.+ .....|.+||..+-.+... +++ |..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4789999988887666543322 23445676666555443 2356788999998766553 332 222
Q ss_pred -CeEEEEECCCCCEEEEe--eCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCce
Q psy16316 109 -KVNSLCLSPIDDTFISG--SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185 (335)
Q Consensus 109 -~V~~~~~~~~~~~l~s~--s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~ 185 (335)
.-...++++++++++-. +---+|-|-|+..++....+...+...+.-. ...-|.+-+.||.+....+....+ ..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk-~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGK-EA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE--ETTEEEEEETTSCEEEEEETSTSS-EE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec--CCCceEEEecCCceEEEEECCCCC-Ee
Confidence 12345666666655442 3345667777776666555555443322222 234466777888888888764221 11
Q ss_pred eeE--EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee--eeecc--------cccCCCCceEEEEcCCCc
Q psy16316 186 SNF--KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL--QTLAG--------FLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 186 ~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~--------~~~~~~~v~~~~~sp~~~ 253 (335)
... .+..+..-.+..-+++..+..++--+..|.|+-.|+...... ....- .....+ ---+++++..+
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG-~Q~~A~~~~~~ 250 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG-WQLIAYHAASG 250 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S-SS-EEEETTTT
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc-eeeeeeccccC
Confidence 111 111111111122234444555555667777777776544311 11100 000011 11267776544
Q ss_pred EEEE-Ee-------CCC--cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee---ceeEEeccccccc
Q psy16316 254 YVIS-GS-------TDG--RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 254 ~l~t-gs-------~dg--~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~---~~~~~w~~~~~~~ 315 (335)
.|.+ -. .|+ .|-++|+.+++++.+++..| ++.+++.+.+.+ +|...+ +++.+|. +..+
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D--~~tG 322 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYD--AATG 322 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEE--TTT-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEe--CcCC
Confidence 3333 11 122 36777899999988887543 577899988754 554332 4566664 4444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.3 Score=40.42 Aligned_cols=77 Identities=16% Similarity=0.373 Sum_probs=51.2
Q ss_pred ceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc----CC----------------CcE-EE
Q psy16316 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT----PD----------------SKY-VI 256 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s----p~----------------~~~-l~ 256 (335)
...+..+|++++.+++.+-|.|.++|+.++..++..++.... .+.|- +. ..+ ++
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-----qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-----QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-----eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 356899999999988877899999999998877766553221 11111 10 112 23
Q ss_pred EEeCCCcEEEEECCCCeeEEEeC
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
=+-.-|.|.||.+..|.++..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 34456788899888777766543
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.036 Score=51.48 Aligned_cols=73 Identities=8% Similarity=0.137 Sum_probs=57.4
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeE-EEEeCCCCcEEEeeeceeEEecccccccc
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQ-TIQFNPKFNMMASACTNLAFWIPTYLSNH 316 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~~~s~~~~~~~w~~~~~~~~ 316 (335)
.+..+.|+|.-..+|++..+|.|-+..++ ..++..++. |...++ +++|.|+|+.+|.|-.+.+|-.-+.++++
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 35568999999999999999999999987 777777764 555666 99999999999999765555544555444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.7 Score=41.61 Aligned_cols=225 Identities=12% Similarity=0.176 Sum_probs=103.9
Q ss_pred eEEEEEcCCCceEe--eecCCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 88 TVRYLSLHDNKYIR--YFPGHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 88 ~i~~~~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
.+..||..+++-.. .++..... .+++. -++...+.||.+ ..+..+|..+......-.+.... ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 46677877654322 22211111 12222 245677777754 34677887765432211111111 1122234
Q ss_pred CCCEEEEEEcCC-----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----------------
Q psy16316 159 EGLIFGVGVNSD-----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG----------------- 216 (335)
Q Consensus 159 ~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----------------- 216 (335)
++.+++.|+.++ ++..||..+. .+...............+ .-++...+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccc
Confidence 677888887653 5788887642 122211111111111112 2356666666543
Q ss_pred ------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC------cEEEEECCC-C-ee-EEEeCCC
Q psy16316 217 ------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG------RIHIWNAEK-G-FK-VCVLDAD 281 (335)
Q Consensus 217 ------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg------~v~iwd~~~-~-~~-~~~~~~~ 281 (335)
..+..||+.+.+... +.......... + +..-+++..+.||.++ .+..||..+ . +. ...++.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~-v~~m~~~r~~~-~-~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~- 501 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWET-LPNFWTGTIRP-G-VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES- 501 (557)
T ss_pred ccccccceEEEECCCCCeEee-cCCCCcccccC-c-EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-
Confidence 247778887765432 11111111111 1 2233577888887642 467899876 2 22 222221
Q ss_pred CCCCeEEEEeCCCCcEEEeeece----eEEecc------cccccccCCCCccce
Q psy16316 282 HPSPVQTIQFNPKFNMMASACTN----LAFWIP------TYLSNHQEPDTIDNL 325 (335)
Q Consensus 282 h~~~v~~v~~sp~~~~~~s~~~~----~~~w~~------~~~~~~~~~~~~~~~ 325 (335)
..... .++.. ++.+.+.|+.+ +..|++ ..+.+|.++++.+|+
T Consensus 502 ~r~~~-~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~~~~~~~~ 553 (557)
T PHA02713 502 RLSAL-HTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSNSYIMHNI 553 (557)
T ss_pred ccccc-eeEEE-CCEEEEEeeecceeehhhcCcccccccchhhhcCCceEeecc
Confidence 11122 22222 56777777532 222222 345566666666553
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.3 Score=42.31 Aligned_cols=286 Identities=13% Similarity=0.081 Sum_probs=133.7
Q ss_pred CCccEEEEEECCC--C-C---EEEEecCCCeEEEEEccCCccee--eeeccc-cc--ceEEEEecCCCeeEEeecCCCCe
Q psy16316 20 NTDKITSIDYSAD--G-L---LLISCSEDDQIVIYDCELGTNKR--TVFSKK-YG--VDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 20 h~~~V~~v~~s~~--g-~---~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
-...|.|++++|- + + .+|.|.++..+.+--.....+.. ...+.. .+ +-...+-.+ ...+..+..||.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgdG~ 606 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGDGA 606 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc--ceEEEEEcCCce
Confidence 3567999999974 2 3 78999998877664332221111 111111 11 112222222 444555566888
Q ss_pred EEEEEcCC--CceEeee--cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCC--CCE
Q psy16316 89 VRYLSLHD--NKYIRYF--PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE--GLI 162 (335)
Q Consensus 89 i~~~~~~~--~~~~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 162 (335)
+..+.+.. +.....- .-.+.++.=-.|+..+..-+-+..|.=.-++..+..-+..-+.......+..|+.+ +.-
T Consensus 607 l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 607 LLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCce
Confidence 88776543 3321111 11234554445554444333334455555554433211111111111112222221 122
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-----------C---CeEEEEECCCCe
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-----------G---SIIRTFDAYNGQ 228 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-----------~---~~i~i~d~~~~~ 228 (335)
++.+ +.+.+++.-+...++........ ......+++.+....+.+.+. . ..++++|-.+.+
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtvpl----~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTVPL----GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeeecC----CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 2333 34566666655432221111111 011133455543332222221 1 236777776665
Q ss_pred eeeeeccc-ccCCCCceEEEEcCC-CcEEEEEe----------CCCcEEEEECCCCeeEEEe-CCCCCCCeEEEEeCCCC
Q psy16316 229 CLQTLAGF-LNNKGCPLEASFTPD-SKYVISGS----------TDGRIHIWNAEKGFKVCVL-DADHPSPVQTIQFNPKF 295 (335)
Q Consensus 229 ~~~~~~~~-~~~~~~v~~~~~sp~-~~~l~tgs----------~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~v~~sp~~ 295 (335)
.+...+-- ......+.++.|.-| +.++++|. ..|+|.+|.+.+..++..+ +..-.+.+.++.-- +|
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng 840 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NG 840 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CC
Confidence 43322110 111123444568777 67888876 4578888888773333322 22223455554432 67
Q ss_pred cEEEeeeceeEEeccccc
Q psy16316 296 NMMASACTNLAFWIPTYL 313 (335)
Q Consensus 296 ~~~~s~~~~~~~w~~~~~ 313 (335)
+++|+-...+++++++..
T Consensus 841 kllA~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWTTE 858 (1096)
T ss_pred eEEEecCcEEEEEEcccc
Confidence 899988889999887655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.97 Score=43.33 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=71.5
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE--cCCCcEEEEEeCCCcEEEEECC--------
Q psy16316 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF--TPDSKYVISGSTDGRIHIWNAE-------- 270 (335)
Q Consensus 201 ~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~tgs~dg~v~iwd~~-------- 270 (335)
+.-|.-++..++..++..+.|||...+... .+........|..++| .|+++.+++.|-...|.++-..
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE--~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLE--YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEE--EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 344455666666666778999999988632 2222234556777766 5789999999999999998542
Q ss_pred -CCeeEEEeC-CCCC-CCeEEEEeCCCCcEEEeeeceeEEec
Q psy16316 271 -KGFKVCVLD-ADHP-SPVQTIQFNPKFNMMASACTNLAFWI 309 (335)
Q Consensus 271 -~~~~~~~~~-~~h~-~~v~~v~~sp~~~~~~s~~~~~~~w~ 309 (335)
....+..++ ..|+ .+|.+..|-++|.+++.++.-+.++.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 111222221 1233 68999999999998888877777753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.2 Score=38.12 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCCEEEEeeCCCcEEEeecCC-CCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeE-------
Q psy16316 117 PIDDTFISGSYDKTVRLWDLRS-PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF------- 188 (335)
Q Consensus 117 ~~~~~l~s~s~D~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------- 188 (335)
..++.|+-|..+| +.++++.. ..............+..+ ++-+.+++- .|+.+.++++...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl-~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVL-PELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEe-cccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence 3567888898888 89999832 222222222222233333 444444333 348999999886543321100
Q ss_pred --EeccCCCccceEEE--EccCC-CEEEEEeCCCeEEEEECCCC-----eeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 189 --KFAAEKECDWTGIK--FSADG-KYILISTNGSIIRTFDAYNG-----QCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 189 --~~~~~~~~~~~~~~--~s~~~-~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
.........+...+ -.+.+ ..|+++ ..+.|.+|..... +..+++. -...+..++|. ++.|+.|
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEe--CCEEEEE
Confidence 00111111222222 12233 344444 4557888876543 2333332 23567788888 5567777
Q ss_pred eCCCcEEEEECCCCeeEEE
Q psy16316 259 STDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 259 s~dg~v~iwd~~~~~~~~~ 277 (335)
..++ ..+.|+.++.....
T Consensus 155 ~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred eCCc-eEEEecCCCCceEE
Confidence 7554 88889886654443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.8 Score=40.05 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=31.6
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec-c-CCCccceEEEEccCC
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-A-EKECDWTGIKFSADG 207 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~~~ 207 (335)
.+++.|++.++++--..|.|++++...........+... . .......+|+++|+-
T Consensus 34 ~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 34 ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 457888988877665468888887543221111111100 1 123446789999885
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.5 Score=38.43 Aligned_cols=216 Identities=19% Similarity=0.196 Sum_probs=112.5
Q ss_pred EEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee--
Q psy16316 27 IDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF-- 103 (335)
Q Consensus 27 v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-- 103 (335)
-.|.+++. ++.+--..+.|.-||..+++... +.....+........ ...++++ +..+.+++++.+..+..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--~~~p~~~~~~~~~d~-~g~Lv~~---~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--FPSPGGFSSGALIDA-GGRLIAC---EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--EECCCCcccceeecC-CCeEEEE---ccccEEEeccCCceeEEecc
Confidence 35677776 45555577888888887664322 112222222222222 2222222 445666676555442222
Q ss_pred --cCCC-CCeEEEEECCCCCEEEEeeC-----------CCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEE-E
Q psy16316 104 --PGHT-KKVNSLCLSPIDDTFISGSY-----------DKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVG-V 167 (335)
Q Consensus 104 --~~H~-~~V~~~~~~~~~~~l~s~s~-----------D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 167 (335)
.+.. ..-+.+...|+|.+-++... -|.|...|. .+........ -.....++|+|+++.+..+ +
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1222 34567888898886666443 122333332 2222222211 1122357899999655544 4
Q ss_pred cCCeEEEEEccCCCC--CceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-eEEEEECCCCeeeeeecccccCCCCce
Q psy16316 168 NSDTIKLYDVRSFDK--GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
..+.+.-|++..... ................-+++.+.+|++.+++..++ .|..|+.. ++.+..+.-.. ..+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---CCCc
Confidence 457888887763111 00011111111222335688899999886555544 89999998 88777765432 3455
Q ss_pred EEEEc-CCCc
Q psy16316 245 EASFT-PDSK 253 (335)
Q Consensus 245 ~~~~s-p~~~ 253 (335)
+++|- |+.+
T Consensus 259 ~~~FgG~~~~ 268 (307)
T COG3386 259 NPAFGGPDLN 268 (307)
T ss_pred cceEeCCCcC
Confidence 66763 4444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.5 Score=40.68 Aligned_cols=153 Identities=8% Similarity=0.064 Sum_probs=78.0
Q ss_pred cceEEEEecCCCeeEEeec----CCCCeEEEEEcC-CCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-----------
Q psy16316 65 GVDLIRFTHAKQAAIHAST----KIDDTVRYLSLH-DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD----------- 128 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~----~~d~~i~~~~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----------- 128 (335)
.+...+.++++....+... ..|..-.+|-.. .+.......+. ....-.|+|+|..|++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4567777887766544432 123344444332 22223333443 37788999998888877533
Q ss_pred -CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceee---EEeccCCCccceEEEEc
Q psy16316 129 -KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN---FKFAAEKECDWTGIKFS 204 (335)
Q Consensus 129 -~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~s 204 (335)
+.+.+.++..+.... ...+.+..+.|+|||..++.-. ++.|.+=-+.....+.... .............+.|.
T Consensus 429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 122222333322211 2344566788999999877655 4666663222212222110 01111112223568899
Q ss_pred cCCCEEEEEeCCCeEEEEE
Q psy16316 205 ADGKYILISTNGSIIRTFD 223 (335)
Q Consensus 205 ~~~~~l~~~~~~~~i~i~d 223 (335)
.++.++ ++..+....+|.
T Consensus 506 ~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred cCCEEE-EEecCCCCceEE
Confidence 999865 444444333343
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.5 Score=37.55 Aligned_cols=167 Identities=10% Similarity=0.073 Sum_probs=100.5
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc--ceEEECCCCCEEEEEEcCCeEEEEEccCCC
Q psy16316 104 PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR--PIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~ 181 (335)
.|-...|.++.|+|+.+.|++......-.+|=...++.+..+...+.. ..+.+--+++++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 345566999999999999999887777777766677777766544322 223444456666666667777777665421
Q ss_pred CC-----ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee---ccccc----CCCCceEEEEc
Q psy16316 182 KG-----PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL---AGFLN----NKGCPLEASFT 249 (335)
Q Consensus 182 ~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---~~~~~----~~~~v~~~~~s 249 (335)
.. ...++......++.+.+++++|.+..|..+-+..=+.||....+...-.. ..+.. ....+..+.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 10 01111112233567789999999999988877776777765533211000 00000 01235567788
Q ss_pred CC-CcEEEEEeCCCcEEEEECC
Q psy16316 250 PD-SKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 250 p~-~~~l~tgs~dg~v~iwd~~ 270 (335)
+. +.+|+-+.+++.+--.|..
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC
Confidence 74 4556666667766666654
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.6 Score=40.48 Aligned_cols=176 Identities=14% Similarity=0.242 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCceEe--eecCCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCcc-eEEEC
Q psy16316 87 DTVRYLSLHDNKYIR--YFPGHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSRP-IAAFD 157 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~ 157 (335)
..+..||..++.-.. .+.. ...-.++++.. +...+.||.| .++..+|.++.+....-.+..... .....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCc-ccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 567888888774332 2222 22233444443 5788899999 456788887766433221111111 11122
Q ss_pred CCCCEEEEEEcCC-----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC------CeEEEEECCC
Q psy16316 158 PEGLIFGVGVNSD-----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG------SIIRTFDAYN 226 (335)
Q Consensus 158 ~~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~------~~i~i~d~~~ 226 (335)
-+|.++++|+.|+ ++-.||.++.. +........... ..-.-.-+|...++|+.+ ..+..||..+
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~r~--~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTRRS--GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCc---ccccCCCCccee--eeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 3688899998886 46667665421 111100000000 111122345555555533 4578888887
Q ss_pred CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-----EEEEECCCC
Q psy16316 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-----IHIWNAEKG 272 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-----v~iwd~~~~ 272 (335)
.+....-. ....... ..+ -.-++.+++.||.|+. |..||..+.
T Consensus 454 ~~W~~~~~-M~~~R~~-~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 454 NTWTLIAP-MNTRRSG-FGV-AVLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CceeecCC-ccccccc-ceE-EEECCEEEEECCccCCCccceEEEEcCCCC
Confidence 65432111 1111111 112 2235788899998773 777887654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.1 Score=42.82 Aligned_cols=174 Identities=10% Similarity=0.113 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCCC-----cEEEeecCCCCceeEEEecCCcc-eEEECC
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYDK-----TVRLWDLRSPNCQGIMHVSGSRP-IAAFDP 158 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~ 158 (335)
..+..||+.++.-... +..-.... +++. -++...+.||.++ ++.+||..+......-.+..... .....-
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~ 397 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL 397 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE
Confidence 3567788876643221 11111111 2222 2466777787764 47889988764332211111110 111223
Q ss_pred CCCEEEEEEcC-----------------------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 159 EGLIFGVGVNS-----------------------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 159 ~~~~~~~~~~d-----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
++.+++.|+.+ ..+..||+.+. .+............ .+++ .-++...+.|+.
T Consensus 398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~ 472 (557)
T PHA02713 398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNFWTGTIR-PGVV-SHKDDIYVVCDI 472 (557)
T ss_pred CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC---eEeecCCCCccccc-CcEE-EECCEEEEEeCC
Confidence 67788887754 24666776541 12111111111111 1122 224555555543
Q ss_pred C------CeEEEEECCC-Ceee--eeecccccCCCCceEEEEcCCCcEEEEEeCCC--cEEEEECCCC
Q psy16316 216 G------SIIRTFDAYN-GQCL--QTLAGFLNNKGCPLEASFTPDSKYVISGSTDG--RIHIWNAEKG 272 (335)
Q Consensus 216 ~------~~i~i~d~~~-~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg--~v~iwd~~~~ 272 (335)
+ ..+..||..+ .+.. ..+.. .... ..++ .-+++..++||.|+ .+..||..+.
T Consensus 473 ~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~---~r~~-~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 473 KDEKNVKTCIFRYNTNTYNGWELITTTES---RLSA-LHTI-LHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCCCccceeEEEecCCCCCCeeEccccCc---cccc-ceeE-EECCEEEEEeeecceeehhhcCcccc
Confidence 2 2467899886 4432 22211 1111 1122 22688999999988 6777777654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.6 Score=36.92 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=113.4
Q ss_pred eEeeecCCC--CCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCceeEEEecCCc--ceEEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFPGHT--KKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQGIMHVSGSR--PIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v 172 (335)
.++.++ |. ..-..+.|..++.++-|.+.-| .|+.+|+.+++........... .-++.. +..++..-..++..
T Consensus 35 vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 344554 43 2345777767788888887655 8999999998876555443321 011111 34556666788999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc--CCCCceEEEEcC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTP 250 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp 250 (335)
.+||..+.+ ....+.... + =-+++ .++..|+++.....++++|..+.+..+++....+ ......++.+-
T Consensus 113 f~yd~~tl~--~~~~~~y~~--E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 113 FVYDPNTLK--KIGTFPYPG--E--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEETTTTE--EEEEEE-SS--S----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EEEccccce--EEEEEecCC--c--ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 999987643 233333321 1 13455 6788889888888999999999887776653321 22234455554
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCC-----------CC---CCCeEEEEeCCCC-cEEEee
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDA-----------DH---PSPVQTIQFNPKF-NMMASA 301 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~-----------~h---~~~v~~v~~sp~~-~~~~s~ 301 (335)
+|...|=.=....|..-|..+|.....++. .+ .+-.+.+|+.|.. .++++|
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 566666665666788888888876665421 11 3458899998875 455565
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=3.1 Score=40.15 Aligned_cols=58 Identities=10% Similarity=0.304 Sum_probs=37.6
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
+.+..++.||+.++||-=...|+|.+-+.+.....+.+......+=.+++|--+...+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVv 274 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVV 274 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceE
Confidence 4567789999999999999999999988765544444432222222256665444333
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=27.2
Q ss_pred ccEEEEEECCCCC---EEEEecCCCeEEEEEccCC
Q psy16316 22 DKITSIDYSADGL---LLISCSEDDQIVIYDCELG 53 (335)
Q Consensus 22 ~~V~~v~~s~~g~---~lasgs~Dg~i~lwd~~~~ 53 (335)
++|+++.|||+.. +||-+-.-|.+.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 5799999998554 8888888899999999854
|
It contains a characteristic DLL sequence motif. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.7 Score=38.51 Aligned_cols=241 Identities=11% Similarity=0.078 Sum_probs=117.9
Q ss_pred EEEEecCCCeeEEee---cCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCCCEEEEeeCCC-----------cEE
Q psy16316 68 LIRFTHAKQAAIHAS---TKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDTFISGSYDK-----------TVR 132 (335)
Q Consensus 68 ~~~~~~~~~~~~~~~---~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~-----------~i~ 132 (335)
...+++++....+.. |+....+++.|+++++.+.. +.. ..-.++.|.++++.|+....|. .|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 456677776554432 22335689999999977643 222 1122499999988776665444 378
Q ss_pred EeecCCCCce--eEEEecCCc---ceEEECCCCCEEEEEEcC----CeEEEEEccCCC--CCceeeEEeccCCCccceEE
Q psy16316 133 LWDLRSPNCQ--GIMHVSGSR---PIAAFDPEGLIFGVGVNS----DTIKLYDVRSFD--KGPFSNFKFAAEKECDWTGI 201 (335)
Q Consensus 133 vWd~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~ 201 (335)
.|.+.+.... .++...... ..+..++++++++..... ..+.+.|+.... ......+.. ........+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~~~~~v 283 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDGVEYYV 283 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS-EEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCceEEEE
Confidence 8888776544 233222221 235678899887654322 346777765420 111222211 111111222
Q ss_pred EEccCCCEEEEEeC---CCeEEEEECCCCee---eeeecccccCCCCceEEEEcCCCc-EEEEEeCCC--cEEEEECCCC
Q psy16316 202 KFSADGKYILISTN---GSIIRTFDAYNGQC---LQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDG--RIHIWNAEKG 272 (335)
Q Consensus 202 ~~s~~~~~l~~~~~---~~~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg--~v~iwd~~~~ 272 (335)
... .+.+++.+.. .+.|...++.+... ...+.. +.....-..+...+. +++.--.++ .|++++...+
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 222 3333333322 24566667766542 112211 122112223444444 445555555 4888998734
Q ss_pred eeEEEeCCCCCCCeEEEEeCCCCcE-EEeee---ceeEEecccccccc
Q psy16316 273 FKVCVLDADHPSPVQTIQFNPKFNM-MASAC---TNLAFWIPTYLSNH 316 (335)
Q Consensus 273 ~~~~~~~~~h~~~v~~v~~sp~~~~-~~s~~---~~~~~w~~~~~~~~ 316 (335)
.....++..-.+.|..+...++... ..+.+ ..-.+|..+..++.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4444444434556777776666543 33332 23566666666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.5 Score=37.59 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=39.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC-CceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 206 DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG-CPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 206 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
++.++++.-.++.|....+.....+........... .+..+++.|||.++++-+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455666666667888888775543333333222233 678999999999999888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.98 E-value=2 Score=36.53 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=83.7
Q ss_pred CeEEEEECCCCCEEEEee---CCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEE-ccCCCCCc
Q psy16316 109 KVNSLCLSPIDDTFISGS---YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD-VRSFDKGP 184 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s---~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd-~~~~~~~~ 184 (335)
.+.+.+++++++.++... ....+.++.. +..............-.|++++.+.++...+....++. ...... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-E 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc-e
Confidence 688999999998776655 3344555543 33222222222333446888888877776666666663 211111 1
Q ss_pred eeeEEeccCCCccceEEEEccCCCEEEEEe---CCCeEEEEECC---CCeeeeeecc----cccCCCCceEEEEcCCCcE
Q psy16316 185 FSNFKFAAEKECDWTGIKFSADGKYILIST---NGSIIRTFDAY---NGQCLQTLAG----FLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~~~~i~i~d~~---~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~ 254 (335)
........ ....+..+.+||||..++.-. .++.|.+--+. .+. ...+.. .......+..++|.+++.+
T Consensus 102 ~~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~-~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV-PRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC-cceeccceEecccccCcceeeeecCCCEE
Confidence 11111111 111678999999999888765 24556655432 220 111111 1112345678999999988
Q ss_pred EEEEeCCCc
Q psy16316 255 VISGSTDGR 263 (335)
Q Consensus 255 l~tgs~dg~ 263 (335)
++.+...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 777766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.9 Score=39.27 Aligned_cols=227 Identities=13% Similarity=0.185 Sum_probs=109.8
Q ss_pred CCCCCEEEEecCC------CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCCC------CeEEEEEcC
Q psy16316 30 SADGLLLISCSED------DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKID------DTVRYLSLH 95 (335)
Q Consensus 30 s~~g~~lasgs~D------g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~ 95 (335)
+..+.+++.||.+ .++..+|..++.-... ...... ...++.. +..+++.|+.| +++..||..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE---CCEEEEEccccCCCcccceEEEecCC
Confidence 4557788888887 4677888877632211 111111 1112221 12456666666 456678887
Q ss_pred CCceEee--ecCCCCCeEEEEECCCCCEEEEeeCCCc-----EEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEE
Q psy16316 96 DNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYDKT-----VRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGV 167 (335)
Q Consensus 96 ~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~~-----i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (335)
.++-... +....... +++. -+|...+.||.||. +..||..+.+...+-.+.... ......-+|.++++|+
T Consensus 358 ~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcC
Confidence 6653332 11111111 1111 24678888888854 678888776543322111111 1122334678888887
Q ss_pred cCC------eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-----eEEEEECCCCeeeeeeccc
Q psy16316 168 NSD------TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-----IIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 168 ~d~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~~ 236 (335)
.++ ++..||..+. .+.....-...... .+++ .-++...++|+.++ .|..||..+.+.... ...
T Consensus 436 ~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m 509 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APM 509 (571)
T ss_pred cCCCccccceEEEEcCCCC---ceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccC
Confidence 543 5677776542 12111111111111 1222 22455555555443 367788876654221 111
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCc-----EEEEECC
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGR-----IHIWNAE 270 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~-----v~iwd~~ 270 (335)
...... ..+ ..-+++..+.|+.||. |..||..
T Consensus 510 ~~~rs~-~g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 510 TSPRSA-VGV-VVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred cccccc-ccE-EEECCEEEEEecccCccccceeEEcCCC
Confidence 111111 111 1225678889987764 4445544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.6 Score=36.79 Aligned_cols=149 Identities=14% Similarity=0.166 Sum_probs=76.1
Q ss_pred ceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEE-CCCCeee
Q psy16316 152 PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFD-AYNGQCL 230 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d-~~~~~~~ 230 (335)
..+.-.++|.+++++...+...-||... .....+. ......+..|.|+|++...+++ .++.|+.=+ ....+..
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~---~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQ---TTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT----SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCC---ccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 3345678999999998877778887532 1222222 2223456789999998876655 888888877 2222221
Q ss_pred ee-ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CCCCCeEEEEeCCCCcEEEeee-ceeE
Q psy16316 231 QT-LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQTIQFNPKFNMMASAC-TNLA 306 (335)
Q Consensus 231 ~~-~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~~~s~~-~~~~ 306 (335)
.. +.........++.++|.|++...|+|+.. .+ +.....|..-...+. .-+.-+..+.|.++.+-++-|. +.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll 299 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLL 299 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEE
Confidence 11 11111112236789999998888877754 23 333344433333322 2345678889976666677664 4444
Q ss_pred Ee
Q psy16316 307 FW 308 (335)
Q Consensus 307 ~w 308 (335)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.8 Score=38.32 Aligned_cols=241 Identities=12% Similarity=0.159 Sum_probs=128.0
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccc----cceE-EEEecCCCeeEEeecC----CCCeEEEEEcCCCceEeeec
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKY----GVDL-IRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~~~~ 104 (335)
..++.++.|+.+.-.|.++|+.+........ .+.. ... .....++..++ .++.+.-+|.++++.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4567788899999999999988765432111 1110 000 01222332222 36788888888887653321
Q ss_pred ---CC----------------------------CCCeE-EEEECCCCCEEEEee-C----CC-----------cEEEeec
Q psy16316 105 ---GH----------------------------TKKVN-SLCLSPIDDTFISGS-Y----DK-----------TVRLWDL 136 (335)
Q Consensus 105 ---~H----------------------------~~~V~-~~~~~~~~~~l~s~s-~----D~-----------~i~vWd~ 136 (335)
.. ...++ .+++.|...++.-+. . ++ +|.--|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 11 11232 335555544444333 1 22 5666677
Q ss_pred CCCCceeEEEec--------C-Cc-ceEEECCCCC---EEEEEEcCCeEEEEEccCCCCC---ce---eeEEecc-----
Q psy16316 137 RSPNCQGIMHVS--------G-SR-PIAAFDPEGL---IFGVGVNSDTIKLYDVRSFDKG---PF---SNFKFAA----- 192 (335)
Q Consensus 137 ~~~~~~~~~~~~--------~-~~-~~~~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~---~~---~~~~~~~----- 192 (335)
++++..-.++.. . .. .++.+..+|+ .++.+..+|.+.+.|-++.+.. +. .......
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 777765433221 1 11 1233434665 6778888888888887653210 00 0000000
Q ss_pred -------------------------CCCccceEEEEccCCCEEEEEeCC-------------------------------
Q psy16316 193 -------------------------EKECDWTGIKFSADGKYILISTNG------------------------------- 216 (335)
Q Consensus 193 -------------------------~~~~~~~~~~~s~~~~~l~~~~~~------------------------------- 216 (335)
..-.+|..++++|+..++.+.+.+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 000124457888877766654433
Q ss_pred --CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 217 --SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 217 --~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
+.+.-+|+.+++..-+.......... .+.-.+..++.++.||.++.+|..+|+++.....
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~----~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGG----VLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCc----ceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 34666777777655443321111111 1112455777788899999999999988876654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.6 Score=42.83 Aligned_cols=77 Identities=10% Similarity=0.204 Sum_probs=51.0
Q ss_pred CccceEEEEccCCCEEEEEeCCCeEEEEECC-C---------Cee---eeee--c-c-c-ccCCCCceEEEEcCC---Cc
Q psy16316 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAY-N---------GQC---LQTL--A-G-F-LNNKGCPLEASFTPD---SK 253 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~-~---------~~~---~~~~--~-~-~-~~~~~~v~~~~~sp~---~~ 253 (335)
...+..+.++|+|.+++..+..+.. |..+. . ++. -+.+ . . + .+....+..+.|||. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4567789999999999988776643 33332 1 111 0111 0 0 1 122345678999997 47
Q ss_pred EEEEEeCCCcEEEEECCCC
Q psy16316 254 YVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 254 ~l~tgs~dg~v~iwd~~~~ 272 (335)
+|+.=..|+++|+||+.+.
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.63 E-value=2 Score=36.57 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=66.4
Q ss_pred cceEEEEccCCCEEEEEe---CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE-CCCC
Q psy16316 197 DWTGIKFSADGKYILIST---NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN-AEKG 272 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd-~~~~ 272 (335)
.+...++++++..++... ....++++..... ...+. .........|++++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec----cCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 456789999999887665 3345666654322 22221 112355678999988888877777777774 2333
Q ss_pred ee-EEEeCCCCCC-CeEEEEeCCCCcEEEeee---ceeEEecc
Q psy16316 273 FK-VCVLDADHPS-PVQTIQFNPKFNMMASAC---TNLAFWIP 310 (335)
Q Consensus 273 ~~-~~~~~~~h~~-~v~~v~~sp~~~~~~s~~---~~~~~w~~ 310 (335)
.. ...++..... .|..+++||+|..+|... +.-++|..
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 22 2223322222 899999999998766543 34566654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.6 Score=34.38 Aligned_cols=179 Identities=16% Similarity=0.199 Sum_probs=107.2
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCc
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSR 151 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~ 151 (335)
++.+-..+...+.+--.|..+++..+.--+-...-..+..-|++..-++=+.. -|.-.|-++......- +.....
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANL 150 (353)
T ss_pred CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcc
Confidence 33333344345556666777777666555544555677788888655554333 4555665554432211 223334
Q ss_pred ceEEECCCCCEEEEEEc---------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 152 PIAAFDPEGLIFGVGVN---------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
....|++.|++..++.. .+.+++|+... -..-.+|+-.|+|..-++.-.+..|...
T Consensus 151 et~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------------G~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------------GGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred cceeeCCCccEEEeeccccceecCcccCceeeeccCC---------------CCCCcceEECCCCcEEEEeccccceEEc
Confidence 55679999998888753 23455554321 1112568899999998888888888888
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
|..++.. ..+............+--+|.|+.-+|-...+.++.+|...
T Consensus 216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 8877632 22322222112223455677888888877788888888653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.5 Score=37.37 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=59.6
Q ss_pred EEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEE---------
Q psy16316 202 KFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW--------- 267 (335)
Q Consensus 202 ~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw--------- 267 (335)
.|||||++|.+.-+| +.|-+||.+.+ +.++..+..+.--+-.+.+.+||+.++.+.. -|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccc
Confidence 599999999887554 67999998853 3333333333334567999999999887653 23332
Q ss_pred -----------ECCCCeeEEE--eC-CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 268 -----------NAEKGFKVCV--LD-ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 268 -----------d~~~~~~~~~--~~-~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
|..+|..+.+ ++ ..+.-.|..++.-++|.+.+.+-
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 2223322211 11 11334578888888887766553
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=8.6 Score=36.62 Aligned_cols=175 Identities=12% Similarity=0.146 Sum_probs=80.5
Q ss_pred eEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCCc-ceEEECCC
Q psy16316 88 TVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPE 159 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (335)
.+..||+.+.+.... +.........+. -++...+.||.+ ..+..||..+.+....-...... .......+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 466778776654321 111111122222 246677777765 34677887765433211111111 11112235
Q ss_pred CCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC--------CeEEEEECC
Q psy16316 160 GLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG--------SIIRTFDAY 225 (335)
Q Consensus 160 ~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--------~~i~i~d~~ 225 (335)
+.+++.|+.+ +.+..||+.+. .+............ .+ +...++...+.|+.+ ..+..||+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~p~~r~~-~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTN---KWSKGSPLPISHYG-GC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCC---eeeecCCCCccccC-ce-EEEECCEEEEECCccCCCCCcccceEEEecCC
Confidence 6777777632 45778887642 12211111111111 11 222345555555432 238889988
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
+.+.... ............+. .+++.++.||.+ ..+.+||..+.
T Consensus 465 ~~~W~~~-~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 465 TNKWTEL-SSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCceeeC-CCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 7654322 11111111111122 267788888765 36788887654
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=92.78 E-value=12 Score=37.62 Aligned_cols=269 Identities=16% Similarity=0.207 Sum_probs=138.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCc--c--eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGT--N--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.|--..|-.|+.+|.++..||.+..+-++... . .+...-...++.--+|.......+++.+ |.-..+|.- +++
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s--drP~viY~~-n~k 661 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS--DRPTVIYSS-NGK 661 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC--CCCEEEEec-CCc
Confidence 34445555678899999999999877655432 1 1111222334455555554444444443 444444432 222
Q ss_pred eEeeecCCCCCeE-EEEECCC--CCEEEEeeCCCcEEEeecCCCCce--eEEEecCCcceEEECCCCCEEEEEEcC----
Q psy16316 99 YIRYFPGHTKKVN-SLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQ--GIMHVSGSRPIAAFDPEGLIFGVGVNS---- 169 (335)
Q Consensus 99 ~~~~~~~H~~~V~-~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d---- 169 (335)
.+..--. -..+. -+.|+.+ ...|+++. .+.+++.-+..-+.. +.+........+++++....+++.+..
T Consensus 662 Lv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 662 LVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 2211000 01111 2233332 24566665 345777665432221 222223333334555544444443311
Q ss_pred ----------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeC----------CCeEEEEECCCCe
Q psy16316 170 ----------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTN----------GSIIRTFDAYNGQ 228 (335)
Q Consensus 170 ----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~----------~~~i~i~d~~~~~ 228 (335)
..++++|-++++-....++. ..+....+.+..|..| +.++++|+. .|.|.+|.....+
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~-~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~ 818 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFE-RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN 818 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeecccc-ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence 13556665543211110000 1122223445668777 778888763 4678888877654
Q ss_pred eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.++.+..+.- .+.+.++.. .+|++||.- +..|++|+..+.+++.. +..|..++..+...-.|..++.|+
T Consensus 819 ~L~~v~e~~v-~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 819 SLELVAETVV-KGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred ceeeeeeeee-ccceeehhh-hCCeEEEec--CcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEee
Confidence 4554433222 233333321 357776654 56799999877655543 456778888988888888888887
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=8.4 Score=36.70 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCc-ceEEEC
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFD 157 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~ 157 (335)
..+..||+.+++-... ++...... +++. -++...+.||.+ ..+..||..+.+........... ...+..
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 435 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY 435 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE
Confidence 3466788776543221 11111111 1222 245667777632 45788888765433211111100 011222
Q ss_pred CCCCEEEEEEcC--------CeEEEEEccC
Q psy16316 158 PEGLIFGVGVNS--------DTIKLYDVRS 179 (335)
Q Consensus 158 ~~~~~~~~~~~d--------~~v~iwd~~~ 179 (335)
.++.+++.|+.+ ..+..||..+
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 355666766542 2377788764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.76 E-value=7.7 Score=35.44 Aligned_cols=195 Identities=11% Similarity=0.136 Sum_probs=82.3
Q ss_pred eEEeecCCCCeEEEEEcCC----CceEeeecC---CC----CCeEEEEECCCCCEEEEeeC--C----CcEEEeecCCCC
Q psy16316 78 AIHASTKIDDTVRYLSLHD----NKYIRYFPG---HT----KKVNSLCLSPIDDTFISGSY--D----KTVRLWDLRSPN 140 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~----~~~~~~~~~---H~----~~V~~~~~~~~~~~l~s~s~--D----~~i~vWd~~~~~ 140 (335)
.+++-+-..+.|.+.|+.+ .+..++++. +. ..-..+...|+|+.++|+-. + |-+.+.|-.+..
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 4444555678899999873 355666653 21 22234445578888888532 2 345566666544
Q ss_pred ceeEEEecCCc----ceEEECCCCCEEEEEE--------------------cCCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 141 CQGIMHVSGSR----PIAAFDPEGLIFGVGV--------------------NSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 141 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
........... .-..++|..+.+++.. ..+++.+||+... ...+.+....+. .
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r--~~~Q~idLg~~g-~ 245 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR--KLLQTIDLGEEG-Q 245 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT--EEEEEEES-TTE-E
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC--cEeeEEecCCCC-C
Confidence 44333221111 1235566666666542 2568999999763 222222222111 1
Q ss_pred cceEEEEc--cCCCEEEEEe--CCCeEEEEECCCCeee----eeec-----cc---------ccCCCCceEEEEcCCCcE
Q psy16316 197 DWTGIKFS--ADGKYILIST--NGSIIRTFDAYNGQCL----QTLA-----GF---------LNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 197 ~~~~~~~s--~~~~~l~~~~--~~~~i~i~d~~~~~~~----~~~~-----~~---------~~~~~~v~~~~~sp~~~~ 254 (335)
..-.+.|. |+..+=.+++ .....++|....++.. -.+. +. .....-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 12345553 4444433332 2233444443444321 1111 00 001244678899999998
Q ss_pred EEEEe-CCCcEEEEECCCCeeE
Q psy16316 255 VISGS-TDGRIHIWNAEKGFKV 275 (335)
Q Consensus 255 l~tgs-~dg~v~iwd~~~~~~~ 275 (335)
|.... ..|.|+-||+++....
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 76655 5899999999875443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.7 Score=37.34 Aligned_cols=100 Identities=20% Similarity=0.316 Sum_probs=55.0
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCee---eeeec-ccccCCCCceEEEEcCC----CcEEEEEeCC--------C
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQC---LQTLA-GFLNNKGCPLEASFTPD----SKYVISGSTD--------G 262 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~-~~~~~~~~v~~~~~sp~----~~~l~tgs~d--------g 262 (335)
.+|+|.|+|+++++ ...+.|++++ ..+.. +..+. .......-...++|+|+ +.++++-+.. .
T Consensus 5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred eEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 56999999987665 5689999999 44443 22221 11122334578999995 5555555432 2
Q ss_pred cEEEEECCCC------eeEE--EeC----CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 263 RIHIWNAEKG------FKVC--VLD----ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 263 ~v~iwd~~~~------~~~~--~~~----~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
+|.-|....+ .+.. .++ ..| .-..++|.|+|.+.++.+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCCCCcEEEEeC
Confidence 4555655433 1111 112 234 345799999997766654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.8 Score=42.38 Aligned_cols=185 Identities=11% Similarity=0.093 Sum_probs=98.7
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeecCCC-------Cce---------eEEEecC--CcceEEECCCCCEEEEEEcC--C
Q psy16316 111 NSLCLSPIDDTFISGSYDKTVRLWDLRSP-------NCQ---------GIMHVSG--SRPIAAFDPEGLIFGVGVNS--D 170 (335)
Q Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-------~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~d--~ 170 (335)
+.++.++.-..++.++.-+.+.|+-...- ... ..+.... .+......+|+...++-.+. .
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 34555665556666666666666643211 000 0011111 11223445666655554443 4
Q ss_pred eEEEEEccCCCCCceeeEE------eccCCCccceEEEEccCCCE-EEEEeCCCeEEEEECCCCee-eeeecccccCCCC
Q psy16316 171 TIKLYDVRSFDKGPFSNFK------FAAEKECDWTGIKFSADGKY-ILISTNGSIIRTFDAYNGQC-LQTLAGFLNNKGC 242 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~-l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~ 242 (335)
.|..||++........... ...+...-..++.|+|.-.. .++...|+.|++..+..... ...+ .....
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~----p~t~~ 200 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF----PVTNS 200 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc----Ccccc
Confidence 8999999875432211111 11111122234667765432 33445677777766542211 1111 11234
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCC--eeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKG--FKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
.++++|+|.|+.++.|-..|++.=|...-. .++...+....+.|.+|.|-.+..+++
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 578999999999999999999988875422 122222222357899999977766655
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.74 E-value=10 Score=35.80 Aligned_cols=113 Identities=8% Similarity=0.082 Sum_probs=66.3
Q ss_pred cceEEEEccCC----CEEEEEeCCCeEEEEECC-----CCeeeeeecccccCCC--CceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 197 DWTGIKFSADG----KYILISTNGSIIRTFDAY-----NGQCLQTLAGFLNNKG--CPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 197 ~~~~~~~s~~~----~~l~~~~~~~~i~i~d~~-----~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
.+.++.|+|-+ .-+++-...+.|-+|.+- +.+.+-.-.......- -+..+.|||....|+.-.....--
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 45788998853 244444566789999864 2222211111111111 123578999999888777655434
Q ss_pred EEECCC-CeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec-e--eEEecc
Q psy16316 266 IWNAEK-GFKVCVLDADHPSPVQTIQFNPKFNMMASACT-N--LAFWIP 310 (335)
Q Consensus 266 iwd~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~-~--~~~w~~ 310 (335)
++++.. +.++ ..+..-.+.|-+.+|.++|+.|+.+-+ . ..+|+-
T Consensus 138 ~~sV~~d~srV-kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 138 LPSVHCDSSRV-KADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeeeeeCCceE-EEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 455543 2333 233345689999999999987776643 3 466653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=12 Score=35.10 Aligned_cols=140 Identities=9% Similarity=-0.020 Sum_probs=64.9
Q ss_pred CCCCEEEEecCCC-----eEEEEEccCCccee--eeecccccceEEEEecCCCeeEEeecCCC--CeEEEEEcCCCceEe
Q psy16316 31 ADGLLLISCSEDD-----QIVIYDCELGTNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKID--DTVRYLSLHDNKYIR 101 (335)
Q Consensus 31 ~~g~~lasgs~Dg-----~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~ 101 (335)
.++.+++.||.++ ++..||..+.+... ...........+. . +..+.+.|+.+ ..+..||..+++-..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~--~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A--NNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E--CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 3456777887653 56678877654221 1111111111111 1 22344444432 457778876553322
Q ss_pred --eecCCCCCeEEEEECCCCCEEEEeeCCC---cEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 102 --YFPGHTKKVNSLCLSPIDDTFISGSYDK---TVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 102 --~~~~H~~~V~~~~~~~~~~~l~s~s~D~---~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
.++...... +++ .-++...+.||.++ ++..||.++.+....-...... ...+...++.+++.|+ .+..|
T Consensus 346 ~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 346 MPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFY 420 (480)
T ss_pred CCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEe
Confidence 222111111 122 22466777777653 4678888765433211111110 0112223567777773 46778
Q ss_pred EccC
Q psy16316 176 DVRS 179 (335)
Q Consensus 176 d~~~ 179 (335)
|.++
T Consensus 421 dp~~ 424 (480)
T PHA02790 421 CESS 424 (480)
T ss_pred cCCC
Confidence 8754
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.10 E-value=12 Score=34.22 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=62.3
Q ss_pred ccceeeeccCCc---cEEEEEECCCCCEEEEecC--------------------CCeEEEEEccCCcceeeeeccccc--
Q psy16316 11 YKVAKLFRENTD---KITSIDYSADGLLLISCSE--------------------DDQIVIYDCELGTNKRTVFSKKYG-- 65 (335)
Q Consensus 11 ~~~~~~~~~h~~---~V~~v~~s~~g~~lasgs~--------------------Dg~i~lwd~~~~~~~~~~~~~~~~-- 65 (335)
|++........+ .-...-|.|-.+.++|..+ -.++.+||+.+.+.++++.-...+
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 455554443222 2234555666667777655 478999999999988887554322
Q ss_pred ceEEEEecCCCe--eEEeecCCCCeE-EEEEcCCCce--Ee--eecC-----------------CCCCeEEEEECCCCCE
Q psy16316 66 VDLIRFTHAKQA--AIHASTKIDDTV-RYLSLHDNKY--IR--YFPG-----------------HTKKVNSLCLSPIDDT 121 (335)
Q Consensus 66 ~~~~~~~~~~~~--~~~~~~~~d~~i-~~~~~~~~~~--~~--~~~~-----------------H~~~V~~~~~~~~~~~ 121 (335)
.-.++|.+++.. .++.++ ....| ++|.-+.++- .+ .+.. -..-|+.+..+.|+++
T Consensus 247 pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred eEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 457888777554 333333 23333 3333232221 11 1111 0244789999999998
Q ss_pred EEEee-CCCcEEEeecCCCCc
Q psy16316 122 FISGS-YDKTVRLWDLRSPNC 141 (335)
Q Consensus 122 l~s~s-~D~~i~vWd~~~~~~ 141 (335)
|.-.. .+|.||.+|+.....
T Consensus 326 LYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS
T ss_pred EEEEcccCCcEEEEecCCCCC
Confidence 75555 599999999987543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.10 E-value=3.8 Score=37.45 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=40.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 59 (335)
......|....+.+.++..+|++++.|....=|.|.|+|+.++..++-+
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 3444567788889999999999999999888899999999988655443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.98 E-value=9.3 Score=36.91 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEE--ccCCCEEEEEeCCCeEEEEEC---------CCC
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKF--SADGKYILISTNGSIIRTFDA---------YNG 227 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~~~~i~i~d~---------~~~ 227 (335)
-++..++..+..++.|||.+... ..+...-+....+..+.| .|++..+++-+-++.|.+|.- .+.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 44444555556789999997532 222222223345556665 678888888778888888853 122
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
..++++.-......+|.+..|.++|.+++..| ..+.|++..
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 23343322111223566789999986655443 458888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.81 E-value=15 Score=34.94 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=59.6
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccc-ccceE----------EEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKK-YGVDL----------IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..+..++.++.|.-.|.++|+.+....... ..+.. ++.. .. .+ ..+..|+.+.-+|.++++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v-~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KV-FFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EE-EEEcCCCEEEEEECCCCCEEe
Confidence 4566667778899999999998776553221 11110 0111 11 22 234457888888999998875
Q ss_pred eec--CCCC--CeEEEEECCCCCEEEEee------CCCcEEEeecCCCCcee
Q psy16316 102 YFP--GHTK--KVNSLCLSPIDDTFISGS------YDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 102 ~~~--~H~~--~V~~~~~~~~~~~l~s~s------~D~~i~vWd~~~~~~~~ 143 (335)
... .+.. .+.+--.-.++ .++.++ .+|.|.-+|.++++..-
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeE
Confidence 443 1211 12111111123 444443 37899999998887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.3 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=24.5
Q ss_pred ceEEEEcCCCc---EEEEEeCCCcEEEEECCCCe
Q psy16316 243 PLEASFTPDSK---YVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 243 v~~~~~sp~~~---~l~tgs~dg~v~iwd~~~~~ 273 (335)
+.++.|||++. +|+-.-.-|.|.|+|+.++.
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 56799998554 88888778999999997543
|
It contains a characteristic DLL sequence motif. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.72 E-value=19 Score=35.72 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=57.4
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.-.-.|..|.++|+|.+||-.|..|...+.=.........+......+.+ |-+.+...-
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~C---------------------rt~~v~~~~ 140 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINC---------------------RTVPVDERF 140 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeE---------------------EEEEechhh
Confidence 34457889999999999999998776655432211000001111111111 111111110
Q ss_pred eEeeecCCCCCeEEEEECCC---CCEEEEeeCCCcEEEeecCCCC
Q psy16316 99 YIRYFPGHTKKVNSLCLSPI---DDTFISGSYDKTVRLWDLRSPN 140 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~i~vWd~~~~~ 140 (335)
....+...|..+.|||. +..|+-=..|+++|+||+...+
T Consensus 141 ---~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 141 ---FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ---ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 01234568899999996 4678888889999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.7 Score=39.51 Aligned_cols=117 Identities=14% Similarity=0.223 Sum_probs=76.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee----eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR----TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
...|+|.++.||+|.+.||.--.|++|.+.+....+... ........+....|....+..++. +..+.+|-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~----~~G~e~y~v 139 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFIT----DQGIEFYQV 139 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEe----cCCeEEEEE
Confidence 457799999999999999999999999999984332211 111122335556676665544443 344666665
Q ss_pred CC-CceEeeecCCCCCeEEEEECCCCCEE--EEeeCCCcEEEeecCCC
Q psy16316 95 HD-NKYIRYFPGHTKKVNSLCLSPIDDTF--ISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 95 ~~-~~~~~~~~~H~~~V~~~~~~~~~~~l--~s~s~D~~i~vWd~~~~ 139 (335)
.. .+.++..+.|+..|+.-.|.++.+.+ +|+-..+++.=+-++++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 43 34566677899999999999987643 33335555554444443
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=90.53 E-value=4.6 Score=40.98 Aligned_cols=117 Identities=10% Similarity=0.063 Sum_probs=72.4
Q ss_pred ccceEEEEccCCCEEEE--EeCCCeEEEEECCCCeeee-----eecc---cccCCCCceEEEEcCCCc-EEEEEeCCCcE
Q psy16316 196 CDWTGIKFSADGKYILI--STNGSIIRTFDAYNGQCLQ-----TLAG---FLNNKGCPLEASFTPDSK-YVISGSTDGRI 264 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~--~~~~~~i~i~d~~~~~~~~-----~~~~---~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v 264 (335)
..+..+...+|+...++ ..+|..|..||+++....+ -+.. .......+.++.|.|.-. ..|....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34455667777665443 4455689999987543211 1111 111233455678888643 46777789999
Q ss_pred EEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece--eEEeccccc
Q psy16316 265 HIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN--LAFWIPTYL 313 (335)
Q Consensus 265 ~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~--~~~w~~~~~ 313 (335)
++..+........- ..-....++++|+|.|++++.|..+ +..|.+...
T Consensus 181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 99877543322221 2345678999999999999999754 555655444
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=17 Score=34.15 Aligned_cols=172 Identities=11% Similarity=0.111 Sum_probs=78.9
Q ss_pred eEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC--CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCE
Q psy16316 88 TVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD--KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLI 162 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D--~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (335)
++..||..+++-... +.........+ .-++...+.||.+ .++..||..+++....-.+.... ......-+|.+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~I 365 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVI 365 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEE
Confidence 566788876643322 22111111122 2346667777754 46788887655432211111111 11122336778
Q ss_pred EEEEEcC---CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 163 FGVGVNS---DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 163 ~~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
++.|+.+ ..+..||.++. .+............ .+ +...++...+.| |.+-.||..+.+... +......
T Consensus 366 YviGG~~~~~~~ve~ydp~~~---~W~~~~~m~~~r~~-~~-~~~~~~~IYv~G---G~~e~ydp~~~~W~~-~~~m~~~ 436 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHD---QWQFGPSTYYPHYK-SC-ALVFGRRLFLVG---RNAEFYCESSNTWTL-IDDPIYP 436 (480)
T ss_pred EEecCcCCCCccEEEEeCCCC---EEEeCCCCCCcccc-ce-EEEECCEEEEEC---CceEEecCCCCcEeE-cCCCCCC
Confidence 8887754 34667776541 12211111111111 11 122345444444 346778887665432 1111111
Q ss_pred CCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 240 KGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
.... .++ -.+++.++.||.+ ..+..||..++
T Consensus 437 r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 1111 222 2367888888865 34666766543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.73 E-value=23 Score=35.35 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=66.7
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccccc--------ceEEEEecC--------------CCeeEEeecCCCCeEE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG--------VDLIRFTHA--------------KQAAIHASTKIDDTVR 90 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~~--------------~~~~~~~~~~~d~~i~ 90 (335)
+..|..++.++.|.-.|.++|+.+......... ...+.+... .....+..+..|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777888899999999999877665332110 111222111 0111233444688888
Q ss_pred EEEcCCCceEeeecCCCCCeE-------------EEEECC--CCCEEEEeeC----------CCcEEEeecCCCCceeEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVN-------------SLCLSP--IDDTFISGSY----------DKTVRLWDLRSPNCQGIM 145 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~-------------~~~~~~--~~~~l~s~s~----------D~~i~vWd~~~~~~~~~~ 145 (335)
-.|.++++.+..+. ..+.|. ...-.| .+..++.|+. +|.|+-+|.++++..-.+
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 88999998876653 222221 111112 1345666643 688999999999877655
Q ss_pred Ee
Q psy16316 146 HV 147 (335)
Q Consensus 146 ~~ 147 (335)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 43
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.41 E-value=3.3 Score=34.36 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=50.8
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCeeeeee---cccc--------cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTL---AGFL--------NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 201 ~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---~~~~--------~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+.+..++.++++-+.+|.+++||+.+++++-.- .... .....+..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 346668899999999999999999998764322 1111 2334567788888888877766 578999986
Q ss_pred CC
Q psy16316 270 EK 271 (335)
Q Consensus 270 ~~ 271 (335)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 53
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=89.18 E-value=12 Score=31.44 Aligned_cols=142 Identities=16% Similarity=0.256 Sum_probs=77.4
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC-C--CcEEEeecCC--CCceeEEE---ecCC--cceEEECCC
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-D--KTVRLWDLRS--PNCQGIMH---VSGS--RPIAAFDPE 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D--~~i~vWd~~~--~~~~~~~~---~~~~--~~~~~~~~~ 159 (335)
.+||+.+++....-......+.+-.+.++|++|.+|+. | ..+|+++... ..|..... +... .+....-++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 47888887653322222334445567899999999875 3 4578887643 11211111 1111 123445578
Q ss_pred CCEEEEEEcCC-eEEEEEccCCCCCceeeEEeccC-----CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 160 GLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKFAAE-----KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 160 ~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
|++++.|+... +..+|+-+..... .....+... ...-+.-+-..|+|+.++.+..+. .+||..+.+.++.+
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~-~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPG-PVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCC-ceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 99988887763 4455554321111 111111111 111233567889999998887654 56788777665555
Q ss_pred c
Q psy16316 234 A 234 (335)
Q Consensus 234 ~ 234 (335)
-
T Consensus 206 P 206 (243)
T PF07250_consen 206 P 206 (243)
T ss_pred C
Confidence 3
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=88.94 E-value=13 Score=31.42 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=63.8
Q ss_pred cCCCCeEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC
Q psy16316 83 TKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG 160 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (335)
++..+.+.-.|..+++..- .+-| ..+.+-+.- -|++++-|...|.+.+-+.+++.....+. ..........++++
T Consensus 29 gSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~ 105 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDG 105 (354)
T ss_pred ecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCC
Confidence 3345566666777666542 1212 233322222 36689999999999999999996554443 33344456688999
Q ss_pred CEEEEEEcCCeEEEEEccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~ 179 (335)
.++-.|+.|++....|.++
T Consensus 106 glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ceEEEecCCCcEEEecccc
Confidence 9999999999999999876
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.62 E-value=8.7 Score=28.91 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=62.6
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCee--------eeeecccccCCCCceEEE---EcCC--CcEEEEEeCCCcEEEE
Q psy16316 201 IKFSADGKYILISTNGSIIRTFDAYNGQC--------LQTLAGFLNNKGCPLEAS---FTPD--SKYVISGSTDGRIHIW 267 (335)
Q Consensus 201 ~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~~~~v~~~~---~sp~--~~~l~tgs~dg~v~iw 267 (335)
-+|+...+.|++++..+.|-+.+...... ++.+ +-...|.+++ |.|+ ...|+.|+. ..+..|
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 35677777899999999999998764321 1222 2223344553 5432 356777775 469999
Q ss_pred ECCCCeeEEEeCCCCCCCeEEEEeC---CCCcEEEeeeceeEEecc
Q psy16316 268 NAEKGFKVCVLDADHPSPVQTIQFN---PKFNMMASACTNLAFWIP 310 (335)
Q Consensus 268 d~~~~~~~~~~~~~h~~~v~~v~~s---p~~~~~~s~~~~~~~w~~ 310 (335)
|+.++..+.-.+ -++-|+++.+- ....-++-.+++..|+-+
T Consensus 79 DV~~N~d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gf 122 (136)
T PF14781_consen 79 DVENNSDLFYKE--VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGF 122 (136)
T ss_pred EcccCchhhhhh--CccceeEEEEEecCCCCCcEEEECceEEEEEe
Confidence 998876654332 34677777763 222345555566666543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=27 Score=34.53 Aligned_cols=114 Identities=9% Similarity=0.026 Sum_probs=66.9
Q ss_pred ccEEEEEECCCCCEEEEe-----cCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC----CCCeEEEE
Q psy16316 22 DKITSIDYSADGLLLISC-----SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK----IDDTVRYL 92 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasg-----s~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~ 92 (335)
-.+..+.+||||++||-+ +...+|++-|+.++..+...... .-..+.|.+++...++.... ....+..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346678999999987744 33456888899887633222111 11457888877765554432 22467788
Q ss_pred EcCCC--ceEeeecCCCCCeE-EEEECCCCCEEEEee---CCCcEEEeecC
Q psy16316 93 SLHDN--KYIRYFPGHTKKVN-SLCLSPIDDTFISGS---YDKTVRLWDLR 137 (335)
Q Consensus 93 ~~~~~--~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s---~D~~i~vWd~~ 137 (335)
++.++ +-...+++...... .+..+.++++++..+ .++.+.+++..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88877 44445554333333 333444666544332 34678888853
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=16 Score=31.39 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=86.4
Q ss_pred CCeEEEEEcCCC-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEe-ecC-------------------CCCceeE
Q psy16316 86 DDTVRYLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW-DLR-------------------SPNCQGI 144 (335)
Q Consensus 86 d~~i~~~~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vW-d~~-------------------~~~~~~~ 144 (335)
-+.|-+||...+ +.+-.+.+|.-.-..+.+.+||+.++-+. |-|+.- |.. ++..+..
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liek 216 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK 216 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhh
Confidence 356788888754 34556778877778889999999887764 445544 321 2221111
Q ss_pred EEec-----CCcceEEECCCCCEEEEEEcCCeEEEEEccC-----CCCCceeeEEeccCC----CccceEEEEccCCCEE
Q psy16316 145 MHVS-----GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-----FDKGPFSNFKFAAEK----ECDWTGIKFSADGKYI 210 (335)
Q Consensus 145 ~~~~-----~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l 210 (335)
..+. -++.-+...++|.+++.+-..|.-. |... ....++..+....+. ..-+-+++.+.+..++
T Consensus 217 h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~--d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 217 HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRN--DLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCc--cCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 1110 0111234555665554443221100 0000 001111111111000 0112357777666666
Q ss_pred EEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 211 LIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 211 ~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+..+ .++..-+||..+|..+....- +-+.-.-+...-++..+.+|++.+++-
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l-------~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAAL-------PDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEecccc-------cccccceeccCceEEecCCceEEeccc
Confidence 5544 566788999999987654321 011222233444677777888888843
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.87 E-value=6.8 Score=38.24 Aligned_cols=104 Identities=14% Similarity=0.255 Sum_probs=64.1
Q ss_pred CCEEEEEEcCCeEEEEEccCC-----------CC-------CceeeEEeccCCCccceEEEEc--cCCCEEEEEeCCCeE
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSF-----------DK-------GPFSNFKFAAEKECDWTGIKFS--ADGKYILISTNGSII 219 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~-----------~~-------~~~~~~~~~~~~~~~~~~~~~s--~~~~~l~~~~~~~~i 219 (335)
..+++.|.+||.|.+|.+... +. .|. +.... .....+++++ ...+++|++++...|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~~~v--~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FHLRV--GASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC--eEeec--CCceeEEEEEecCcceEEEEecCCceE
Confidence 357788999999999976321 00 011 11111 1233578888 888999999988888
Q ss_pred EEEECCCC--eeeeeecccccCCCCceEEEEcCCC------cEEEEEeCCCcEEEEEC
Q psy16316 220 RTFDAYNG--QCLQTLAGFLNNKGCPLEASFTPDS------KYVISGSTDGRIHIWNA 269 (335)
Q Consensus 220 ~i~d~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~------~~l~tgs~dg~v~iwd~ 269 (335)
-+|-.... +... ...+ .+..-|-+++|-++. ..|++++..|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~-~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYH-VPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEecccccccc-cccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 77754332 1111 0011 122335678876643 27889999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.78 E-value=3.7 Score=34.05 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=39.8
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE-------eCC------CCCCCeEEEEeCCCCcEEEee
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV-------LDA------DHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~-------~~~------~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+.+..++.+|++-+.+|.+++||+.+...... +.. .....|..+.++.+|.-+++-
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 34566789999999999999999987654321 111 244678888999888655543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=87.49 E-value=23 Score=32.97 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=55.4
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeeccccc--CCCCceEEEEcCCC-------cEEEEEe--------
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLAGFLN--NKGCPLEASFTPDS-------KYVISGS-------- 259 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~--~~~~v~~~~~sp~~-------~~l~tgs-------- 259 (335)
..|+|.||+++|++--..+.|++++..++.. +..+..... ...-...++|+|+- .+.++-+
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Confidence 5699999998776654458888888665432 111211110 13346789999984 2233321
Q ss_pred -CCCcEEEEECCCC------eeEEE--eC--CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 260 -TDGRIHIWNAEKG------FKVCV--LD--ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 260 -~dg~v~iwd~~~~------~~~~~--~~--~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
....|..|.+... .+... ++ ..|.+ ..++|.|+|.+.++.+
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~G 164 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIG 164 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEEC
Confidence 1234555655321 11111 11 12433 4788999997766443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=17 Score=32.29 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=59.6
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
.+..+.+.|++.+++++..+...+.++-. ++.-..+. ......+..+.+.|+++.++.|. .|.+++=....+..-.
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYSTWEPG-QTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWS 249 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEEcCCC-CCeEEEee--CCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccc
Confidence 45678899998887777655444433321 11111221 12234567789999998877664 5765432233332211
Q ss_pred EeCCC---CCCCeEEEEeCCCCcEEEeeeceeEEe
Q psy16316 277 VLDAD---HPSPVQTIQFNPKFNMMASACTNLAFW 308 (335)
Q Consensus 277 ~~~~~---h~~~v~~v~~sp~~~~~~s~~~~~~~w 308 (335)
..... -...+.+++|+|++.+++.+.....+.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Confidence 11111 123578899999988877765433333
|
|
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=86.86 E-value=23 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=36.1
Q ss_pred EEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece----eEEecccccc
Q psy16316 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN----LAFWIPTYLS 314 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~----~~~w~~~~~~ 314 (335)
..|..+|++.-||..+......++ --..-+.++.||++.+++.+-.. .++|.-....
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld--~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLD--GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA 253 (376)
T ss_pred ecCCCccceEEecCcccchhhhhh--cccccccccCCCCCCEEEEEeeccceeeeeEecCCcc
Confidence 344467888888876543322222 23456789999999998877533 3788654443
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=86.78 E-value=3.5 Score=37.56 Aligned_cols=88 Identities=9% Similarity=0.044 Sum_probs=55.4
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe---CCCCCCCeEEEEeCCCCcEEEeeeceeEEecccccccc
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL---DADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNH 316 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~~~~~ 316 (335)
.+.+.++.||||.+.||.--.|++|.+++.......... ...-...|..-.|+.+..+-......+.+|-..++++.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrs 145 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRS 145 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhh
Confidence 457889999999999999999999999998322111111 11123457777887765554444455677765555554
Q ss_pred cCCCCccceEEEE
Q psy16316 317 QEPDTIDNLKIYL 329 (335)
Q Consensus 317 ~~~~~~~~~~~~~ 329 (335)
- .+++++|+-+
T Consensus 146 l--RlVks~~~nv 156 (657)
T KOG2377|consen 146 L--RLVKSHNLNV 156 (657)
T ss_pred h--hhhhhcccCc
Confidence 3 4445544433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=86.77 E-value=16 Score=29.97 Aligned_cols=101 Identities=15% Similarity=0.360 Sum_probs=61.4
Q ss_pred CEEEEEeCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCC------cEEEE---ECC--CCee
Q psy16316 208 KYILISTNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG------RIHIW---NAE--KGFK 274 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg------~v~iw---d~~--~~~~ 274 (335)
..|+.+..+..|.+|++....+ ..++ ...+.+..+.++..|+||+|-=++. .+|+| ... ...+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F----~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF----STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE----cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 4455557888999999883332 2232 2346688899999999999854322 45664 322 1111
Q ss_pred EE---------------------EeCCCCCCCeEEEEeCC-CCcEEEeeeceeEEecccc
Q psy16316 275 VC---------------------VLDADHPSPVQTIQFNP-KFNMMASACTNLAFWIPTY 312 (335)
Q Consensus 275 ~~---------------------~~~~~h~~~v~~v~~sp-~~~~~~s~~~~~~~w~~~~ 312 (335)
+. .++..-..+..+++.-| +|+++++....+.+|.+..
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 11 11112233566777766 5778777778888887633
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.57 E-value=22 Score=33.24 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=37.8
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
.+.|+|.||..|.|++||-- |.+..+.-.+-..+|..+..+.+|..+.+.|.+
T Consensus 572 esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 35699999999999999953 222222222356789999999999876666644
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=86.37 E-value=29 Score=32.54 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=47.8
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEccCCCC-------CceeeEE--------eccCCCccceEEEEccCC---CEEEEEeC
Q psy16316 154 AAFDPEGLIFGVGVNSDTIKLYDVRSFDK-------GPFSNFK--------FAAEKECDWTGIKFSADG---KYILISTN 215 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~s~~~---~~l~~~~~ 215 (335)
+..++.|..++..+.+|.+.++=.+.... .+...+. +.......+..++|+|+. ..|..-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 45788999998888888776654332211 1111111 011122234568899986 67777789
Q ss_pred CCeEEEEECCCCeee
Q psy16316 216 GSIIRTFDAYNGQCL 230 (335)
Q Consensus 216 ~~~i~i~d~~~~~~~ 230 (335)
|..+|+||......+
T Consensus 189 dnviRiy~lS~~tel 203 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTEL 203 (741)
T ss_pred CcEEEEEecCCcchh
Confidence 999999998765443
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=84.72 E-value=56 Score=34.38 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=43.2
Q ss_pred eEEEEcCCCcEEEEEeC------------CCcEEEEECCCC-e--e----EEEe-------CCCCCCCeEEEEeCCCCcE
Q psy16316 244 LEASFTPDSKYVISGST------------DGRIHIWNAEKG-F--K----VCVL-------DADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~------------dg~v~iwd~~~~-~--~----~~~~-------~~~h~~~v~~v~~sp~~~~ 297 (335)
.+++++|+|.+.++-++ ||+|.+.--.+. + + +..+ ..+|-....+||.+|+|.+
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence 56899999987777553 455555432111 0 0 0000 1235567889999999999
Q ss_pred EEeeeceeEEecc
Q psy16316 298 MASACTNLAFWIP 310 (335)
Q Consensus 298 ~~s~~~~~~~w~~ 310 (335)
.++-.+|++|...
T Consensus 676 ~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 676 IIADSGNSRIRKV 688 (1899)
T ss_pred EEecCCchhhhhh
Confidence 9998899887644
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=84.66 E-value=0.45 Score=46.58 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=64.9
Q ss_pred eeccCCccEEEEE-----------ECCCCCEEEEecCCCeEEEEEccCC-----cceeeeecccccceEEEEecCCC---
Q psy16316 16 LFRENTDKITSID-----------YSADGLLLISCSEDDQIVIYDCELG-----TNKRTVFSKKYGVDLIRFTHAKQ--- 76 (335)
Q Consensus 16 ~~~~h~~~V~~v~-----------~s~~g~~lasgs~Dg~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--- 76 (335)
.|++|...+..++ .||||+.||.++.||.++.|-..-. .|...+..|......|....+..
T Consensus 219 l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~ 298 (1283)
T KOG1916|consen 219 LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILV 298 (1283)
T ss_pred HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccC
Confidence 4567766655443 5899999999999999999876422 12222233332222222211111
Q ss_pred ------eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC------------EEEEeeCCCcEEEee
Q psy16316 77 ------AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD------------TFISGSYDKTVRLWD 135 (335)
Q Consensus 77 ------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~------------~l~s~s~D~~i~vWd 135 (335)
...+-++..+..+++|.-...+|+ +.--.+.|..+. -+++. .+++-+.|++|++|-
T Consensus 299 v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 299 VSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred CccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 123334455677888887666665 211223444444 22221 256678899999995
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=84.40 E-value=14 Score=29.25 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=24.7
Q ss_pred CCeEEEEECCCC------CEEEEeeCCCcEEEeecC
Q psy16316 108 KKVNSLCLSPID------DTFISGSYDKTVRLWDLR 137 (335)
Q Consensus 108 ~~V~~~~~~~~~------~~l~s~s~D~~i~vWd~~ 137 (335)
..|.+++|+|.| ..|+..+.++.|.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999965 367888899999999755
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=83.98 E-value=0.18 Score=45.82 Aligned_cols=137 Identities=15% Similarity=0.239 Sum_probs=86.4
Q ss_pred EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-EeCCCeEEEEECCCCeeeeee
Q psy16316 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~~~~i~i~d~~~~~~~~~~ 233 (335)
.+.|.+.-++.++.+..+..||-... ...........-.++|+.++..+++ +-..+.+.+||+.+... ..+
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq-------~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQ-------VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcc-------eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 45565555777777778888874320 0011111112234778888877665 44567799999865321 122
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
+--..+... =+.|++....++.|...|.+.|++..+.++.... ..|...+.++++.+.+..+..++
T Consensus 113 E~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 113 ESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred hccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccceeeecCc
Confidence 111111111 1678999999999999999999999887776554 34889999999999876655443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.80 E-value=15 Score=33.67 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=81.0
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE--EE--ecCCcce----EEECCCCCEEEEEEcCCe
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI--MH--VSGSRPI----AAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~--~~--~~~~~~~----~~~~~~~~~~~~~~~d~~ 171 (335)
++.+..-...|..+-..|+|+.|.--+. .++.++++.+...... .. .+.+... ..+-..|.-+.++..||-
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 4445555577888889999986654433 6788888865443211 11 1111100 011234455566667776
Q ss_pred EEEE-EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 172 IKLY-DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 172 v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
|.-| |++...+..........-...++..+.-..+.+-+++-...|++.++.....+.+- +. .....+.-+++||
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~---~~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FE---RAYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hh---hhhcCcceeeeCc
Confidence 6665 55543221111100000000111111111122334444555666655543332211 01 1112344589999
Q ss_pred CCcEEEEEeCCCcEEEEECCCC
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
++.+|++-. .|+++++.+++.
T Consensus 368 ~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 368 NQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred ccchheeec-CCceEEEEecCC
Confidence 999998865 467999887653
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=83.27 E-value=2.9 Score=40.04 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=28.8
Q ss_pred CccEEEEEECC----CCCEEEEecCCCeEEEEEccCCcceeee
Q psy16316 21 TDKITSIDYSA----DGLLLISCSEDDQIVIYDCELGTNKRTV 59 (335)
Q Consensus 21 ~~~V~~v~~s~----~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 59 (335)
...+.++.+++ +..+|++-+.|+++|+||+.++.++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 44566677776 6789999999999999999999886554
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=83.04 E-value=25 Score=32.92 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=49.3
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEEC---------CCCeee---eeec---cc--ccCCCCceEEEEcCCC---cEEE
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDA---------YNGQCL---QTLA---GF--LNNKGCPLEASFTPDS---KYVI 256 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~---------~~~~~~---~~~~---~~--~~~~~~v~~~~~sp~~---~~l~ 256 (335)
.+..+..++.|..++.++.+|.+..+=. +.++.. +++. .. .+..-.+..++|||+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4566788899998888887776443321 122111 1110 00 0111234567999986 6888
Q ss_pred EEeCCCcEEEEECCCCeeEE
Q psy16316 257 SGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~ 276 (335)
.-+.|..+|+||.++.....
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88899999999998665443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=82.99 E-value=5 Score=22.57 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=20.2
Q ss_pred eccCCccEEEEEECCCCCEEEEec-CC--CeEEEE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCS-ED--DQIVIY 48 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs-~D--g~i~lw 48 (335)
+....+.-....|||||++|+-++ .+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344555677899999998776554 44 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.56 E-value=2.9 Score=39.99 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=28.2
Q ss_pred CCeEEEEECC----CCCEEEEeeCCCcEEEeecCCCCceeEE
Q psy16316 108 KKVNSLCLSP----IDDTFISGSYDKTVRLWDLRSPNCQGIM 145 (335)
Q Consensus 108 ~~V~~~~~~~----~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 145 (335)
..+.+++++. +..+|++.+.|+++|+||+.++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455666666 6689999999999999999999985543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=82.00 E-value=34 Score=29.90 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC
Q psy16316 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~ 183 (335)
+-.+.+..+.-+++|.+++.++.-....-||-....-..... ....+..+.|.|++.+..++ ..+.+++=+...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~---- 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD---- 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT----
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC----
Confidence 345678888889999988888777777889854322222111 22334567889998887655 778887765111
Q ss_pred ceeeEEe--ccC--CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 184 PFSNFKF--AAE--KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 184 ~~~~~~~--~~~--~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
....... ... ..-.+..+++.+++...+++..+..+ .....|+.=++.............+.|.++.+-+|.|
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~--~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL--VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE--EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE--EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 1111111 111 11124678999998888877666433 3444554323322212223345678887665666665
Q ss_pred CCCcEEEE
Q psy16316 260 TDGRIHIW 267 (335)
Q Consensus 260 ~dg~v~iw 267 (335)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 46766555
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=43 Score=30.61 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=69.5
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC---ceee
Q psy16316 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG---PFSN 187 (335)
Q Consensus 112 ~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---~~~~ 187 (335)
.+..++++.+++.+..-..++-||-....-.... ........+.+.+++.+++++ ..+.+.. .-...... .+..
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEE 320 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceee
Confidence 3455666666555544444445553221101111 111223345677888887766 4444332 11111000 1111
Q ss_pred EEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
... ......+..+.|.+++..++++. +|.+... ...++.-+......+-......+.|.++++.+++|. +|.|..|
T Consensus 321 ~~~-~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 321 ADI-KSRGFGILDVGYRSKKEAWAAGG-SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred ccc-CCCCcceEEEEEcCCCcEEEEEC-CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 111 01112357788988888777664 4443333 333433222221111223456788888777777764 6666544
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=80.83 E-value=31 Score=29.10 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=62.7
Q ss_pred EEEEccCCCEEEEEeCC---CeEEEEECCC----CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-cEEEEECCC
Q psy16316 200 GIKFSADGKYILISTNG---SIIRTFDAYN----GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-RIHIWNAEK 271 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~~---~~i~i~d~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-~v~iwd~~~ 271 (335)
+-++-|||+++.+|+.. ..+++++..+ .+... ..........-..+..-|||+.|+.|+.+. +..+|....
T Consensus 71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e-~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~ 149 (243)
T PF07250_consen 71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTE-SPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG 149 (243)
T ss_pred CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceE-CcccccCCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence 44678999999887642 4588888654 11111 111112223323455668999999988874 355555421
Q ss_pred -C---eeEEEeCCC----CCCCeEEEEeCCCCcEEEeeeceeEEeccccc
Q psy16316 272 -G---FKVCVLDAD----HPSPVQTIQFNPKFNMMASACTNLAFWIPTYL 313 (335)
Q Consensus 272 -~---~~~~~~~~~----h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~~ 313 (335)
. .....+... ....=.-+-.-|+|++++.+.....||.+...
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n 199 (243)
T PF07250_consen 150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN 199 (243)
T ss_pred CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence 1 111111110 00111235567999999999877788766444
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=80.66 E-value=43 Score=30.17 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=72.3
Q ss_pred CccEEEEEECCCCCEEEEec-----------CCC-eEEEEEccC--Ccc-eeeeecc-cccceEEEEecCCCeeEEeecC
Q psy16316 21 TDKITSIDYSADGLLLISCS-----------EDD-QIVIYDCEL--GTN-KRTVFSK-KYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs-----------~Dg-~i~lwd~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
-.....++|.++|.++++-. ..+ .|.+++-.. |.. ..+++.. -.....+++.+++ ++++.
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~- 88 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVAT- 88 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeC-
Confidence 45567899999999877753 223 676775432 221 2233322 2233556665443 33332
Q ss_pred CCCeEEEEEcCCC-----c---eEeeecC----CCCCeEEEEECCCCCEEEEeeCC-------------------CcEEE
Q psy16316 85 IDDTVRYLSLHDN-----K---YIRYFPG----HTKKVNSLCLSPIDDTFISGSYD-------------------KTVRL 133 (335)
Q Consensus 85 ~d~~i~~~~~~~~-----~---~~~~~~~----H~~~V~~~~~~~~~~~l~s~s~D-------------------~~i~v 133 (335)
.....++.+.... + .+..+.. +....+.+.|.|+|.+.++-+.. +.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 2333334444221 1 1122322 23457899999999877765521 23333
Q ss_pred eecCCCCceeEEEecCC-cceEEECCCCCEEEEEEc
Q psy16316 134 WDLRSPNCQGIMHVSGS-RPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 134 Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (335)
+|..+.... .+..... ..-++|+++|.++++-..
T Consensus 169 ~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 169 YNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred EecCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 343332221 1211111 134688999988876543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=80.59 E-value=5.1 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.436 Sum_probs=17.0
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
+..++++++|.++++=+...+|.++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777777666666654
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 335 | ||||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-23 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-23 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-23 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 9e-23 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 9e-23 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-23 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 9e-23 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-23 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-22 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-22 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-22 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-22 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-09 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-22 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-22 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-22 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-18 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-14 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-12 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 8e-12 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-12 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 8e-12 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-11 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-11 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-11 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-10 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-10 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 6e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-04 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-07 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 4e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-07 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 6e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 6e-06 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-05 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 6e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 6e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 5e-04 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 9e-04 |
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 1e-39
Identities = 47/288 (16%), Positives = 105/288 (36%), Gaps = 18/288 (6%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTHAKQAAI 79
+ + + +S DG + S S D I I++ ++T+ + + KQA +
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
S + + +++ + GH K + +L S T S + + WD+ +
Sbjct: 299 SIS--ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 140 NCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ + I +G +F V D +K+ + K A K
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVS-WDDHLKVVPA---GGSGVDSSKAVANKLSS 412
Query: 198 W-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
G+ SADG + + I + +G+ + + ++ + + D ++V
Sbjct: 413 QPLGLAVSADGDIAVAACYKH-IAIYS--HGKLTEVPISYNSSC-----VALSNDKQFVA 464
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304
G D ++H++ V HP+ + ++ F+ + + +
Sbjct: 465 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 24/286 (8%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQ--IVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
+ + I + ++ + + E + ++ + GT+ + + ++ + F ++
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
I S D+TV K+ F HTK V+S+ +P F S D T+ L++
Sbjct: 163 I-ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 139 PNCQGIMHVSGSRPIA--------AFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNF 188
G+ + +A + P+G S TIK+++V +
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA--SADKTIKIWNVAT---LKVEKT 276
Query: 189 KFAAEKECDWTGIKFSADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
+ D + + ++ IS NG I + G Q G S
Sbjct: 277 IPVGTRIEDQQ-LGIIWTKQALVSISANGF-INFVNPELGSIDQVRYGHNKAITA---LS 331
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ D K + S +G I+ W+ G V H + + I+
Sbjct: 332 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 47/308 (15%), Positives = 96/308 (31%), Gaps = 23/308 (7%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
+ I + ++ + IT++ SADG L S + I +D G + R
Sbjct: 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
Query: 60 FSK-KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP---GHTKKVNSLCL 115
+ I+ T + DD ++ + + + + L +
Sbjct: 363 PDVHATMITGIKTTSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
S D + K + ++ I + S A + VG + +Y
Sbjct: 420 SA-DGDIAVAACYKHIAIYSHGKLTEVPISYNSSC---VALSNDKQFVAVGGQDSKVHVY 475
Query: 176 DVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
+ S K T + FS +G +++ + + + N L
Sbjct: 476 KLSG---ASVSEVKTIVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNP 293
+ + S++PD+ + +GS D + +WN K ++ H
Sbjct: 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
Query: 294 KFNMMASA 301
+ SA
Sbjct: 591 NETTIVSA 598
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 8e-27
Identities = 38/316 (12%), Positives = 85/316 (26%), Gaps = 75/316 (23%)
Query: 5 DNVIR--SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK 62
+ S +++ E++ + T S G S + I+D T+
Sbjct: 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH------- 93
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
+++ T P + V + +
Sbjct: 94 -----ILKTT------------------------------IPVFSGPVKDISWDS-ESKR 117
Query: 123 I---SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPI--AAFDPEGLIFGVGVNSD-TIKL 174
I ++ ++ + G + +R + F P + + D T+ +
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQ---ARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 175 YDVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
++ F FK + + ++++ DG + I ++ +G
Sbjct: 175 FEGPPFK------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 234 AGFLNNKGCPLEA--------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285
A +++PD + S S D I IWN +
Sbjct: 229 ED----DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284
Query: 286 VQTIQFNPKFNMMASA 301
Q + + S
Sbjct: 285 DQQLGIIWTKQALVSI 300
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 26/277 (9%)
Query: 5 DNVIRSYKVA------KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD---CELGTN 55
+ I S+ ++ + IT I ++ G L + S DD + + + ++
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSS 403
Query: 56 KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115
K + + A+ A + S K + + + L
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAAC---YKHIAIYS--HGKLTEVPISYN--SSCVAL 456
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIK 173
S G D V ++ L + + + I AF G S +
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVI 516
Query: 174 LYDVRS-FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231
Y V + F+ +++ F + +S D + + + + ++
Sbjct: 517 PYSVANNFELAHTNSWTF----HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572
Query: 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ + + + + ++S D I WN
Sbjct: 573 III-KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 33/230 (14%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+ TV + + H+ + SP + SG VR+WD
Sbjct: 36 CNGTSVYTVP---VGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQT 91
Query: 140 NCQGIMHVSG-SRPI--AAFDPEG--LIFGVGVNSDTIKLYDVRSFD-KGPFSNFKFAAE 193
+ S P+ ++D E + ++ + G +
Sbjct: 92 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA---- 147
Query: 194 KECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ F + +IS GS + F+ + T + +
Sbjct: 148 ---RAMNSVDFKPSRPFRIIS--GSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYN 199
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------HPSPVQTIQFNP 293
PD S DG I ++N G K V + D H V + ++P
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 16/185 (8%)
Query: 4 TDNVIRSYKVAKLFRENTD-KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK 62
I Y KL + + S D + +D ++ +Y +
Sbjct: 430 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 489
Query: 63 -KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY---FPGHTKKVNSLCLSPI 118
+ + F++ + V S+ +N + + + HT KV + SP
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP- 546
Query: 119 DDTFI-SGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPEGLIFGVGVNSD-TI 172
D+ + +GS D +V +W++ P+ I+ H S + E I G D I
Sbjct: 547 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG--QDSNI 604
Query: 173 KLYDV 177
K ++V
Sbjct: 605 KFWNV 609
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
+ + G I NG+ + T + + + A +P Y SG
Sbjct: 22 VVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTE---HSHQTTVAKTSPSGYYCASG 77
Query: 259 STDGRIHIWNAEKGFKVC--VLDADHPSPVQTIQFNPKFNMMASA 301
G + IW+ + + + PV+ I ++ + +A+
Sbjct: 78 DVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAV 121
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-39
Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 22/280 (7%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTHAK 75
+ + +SADG +I + ++++++D + + + F+
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
A+ A + V ++ + GH V+ + SP +F++ S D+T+R+W+
Sbjct: 853 HLAVIALS--QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Query: 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS--FDKGPFSNFKFAAE 193
+ + + + F + N ++L ++ D P +
Sbjct: 911 TKKVCKNSAIVLKQEIDV-VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV----- 964
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
+ S +Y+ I+ + N + + G +K FT D K
Sbjct: 965 -----SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG---HKKAVRHIQFTADGK 1016
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+IS S D I +WN + G V H V+ +
Sbjct: 1017 TLISSSEDSVIQVWNWQTGD--YVFLQAHQETVKDFRLLQ 1054
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 7e-37
Identities = 61/311 (19%), Positives = 113/311 (36%), Gaps = 44/311 (14%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D ++ + + + + D++ +S+D + +CS D ++ I+D G T
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
V+ FT+ + A+ D ++ L+ + GHT VN SP D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ S S D T+RLWD+RS N + ++V + PE + V
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV-------------- 801
Query: 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-QTLAGFLN 238
+SADG I+++ ++ FD + L + G
Sbjct: 802 -------------------KCCSWSADGDKIIVAAKNKVLL-FDIHTSGLLAEIHTG--- 838
Query: 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298
+ F+P + + + +WN + KV H S V + F+P +
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSF 897
Query: 299 ASACTNLAFWI 309
+A + +
Sbjct: 898 LTASDDQTIRV 908
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 21/278 (7%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D I+ + +V + + I ++ADG LIS SED I +++ + G +
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFL 1040
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
+ + V R + S D TV+ ++ + R F H V S +S
Sbjct: 1041 QAHQETVKDFRLLQDSR---LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
F S S DKT ++W + + H R AF +G++ G ++ I++++V
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS-AFSLDGILLATGDDNGEIRIWNV 1156
Query: 178 RS---FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
+ + W T + FS D K ++ + G ++ ++ G QT
Sbjct: 1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTF 1214
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271
N + +PD + ++ G ++I +
Sbjct: 1215 YT---NGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 51/316 (16%), Positives = 94/316 (29%), Gaps = 67/316 (21%)
Query: 5 DNVIRSYKVA--KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK 62
++ ++ +++ S + ED I I + +
Sbjct: 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
K V I+FT + I +S D ++ + Y+ H + V L D
Sbjct: 1003 KKAVRHIQFTADGKTLISSSE--DSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DSRL 1058
Query: 123 ISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
+S S+D TV++W++ + + H V S
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGT---------------------------VLSC 1091
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
S+D ++ + + L L G +
Sbjct: 1092 A---------------------ISSDATKFSSTSADKTAKIWSFDLLSPLHELKG---HN 1127
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD--------HPSPVQTIQFN 292
GC ++F+ D + +G +G I IWN G + H V + F+
Sbjct: 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187
Query: 293 PKFNMMASACTNLAFW 308
P + SA L +W
Sbjct: 1188 PDSKTLVSAGGYLKWW 1203
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 43/254 (16%), Positives = 86/254 (33%), Gaps = 36/254 (14%)
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRY-----FPGHTKKVNSLCLSPIDDTFISGSYDK 129
+QA + A + D YL + K I+ HT V C S S DK
Sbjct: 578 RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADK 637
Query: 130 TVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFS 186
T++++ + + H AF + +K++D + +
Sbjct: 638 TLQVFKAETGEKLLDIKAHEDEVLCC-AFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 187 NFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGC 242
+ F+ ++L++T GS ++ +D +C T+ G +
Sbjct: 697 EHS-------EQVNCCHFTNKSNHLLLAT-GSNDFFLKLWDLNQKECRNTMFG---HTNS 745
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------------DHPSPVQTIQ 290
F+PD + + S S DG + +W+ + ++ D V+
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 291 FNPKFNMMASACTN 304
++ + + A N
Sbjct: 806 WSADGDKIIVAAKN 819
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 8e-17
Identities = 32/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR--S 138
+ V+ Y K+ + ++ KT++
Sbjct: 556 GRQPFPNIVQLGLCEPETSEVY---RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVR 612
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFSNFKFAAEKECD 197
P+ + H F +G T++++ + + + D
Sbjct: 613 PHTDAVYHA-------CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE-------D 658
Query: 198 W-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
FS+D YI + ++ +D+ G+ + T + FT S +++
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE---HSEQVNCCHFTNKSNHLL 715
Query: 257 --SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
+GS D + +W+ + + H + V +F+P ++AS
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASCS 762
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-34
Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 25/303 (8%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGT---NKRTVFSKKYGVDLIRFTHAKQA 77
D I+ I LL+ S D + +Y ++ + K+ + F
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL-CLSPIDDTFISGSYDKTVRLWDL 136
I + + + L + + + + DD I+ S+D + + D
Sbjct: 71 QI-YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129
Query: 137 RSPNCQG-------IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189
R+ + I D VG+N+ ++ + + + +
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED-DNGTIE 188
Query: 190 FAAEKECDWTGIKFSADGKYILI-STNGSI-IRTFDA----------YNGQCLQTLAGFL 237
+ K + + S +G + + FD + +C +
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
N F+P K++ + +DG I WN + K+ + V I +
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC 308
Query: 298 MAS 300
+A+
Sbjct: 309 LAT 311
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 1e-12
Identities = 27/165 (16%), Positives = 45/165 (27%), Gaps = 19/165 (11%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGTN--KRTVFSK-KYGVDLIRFTHAKQAAIHASTKI 85
+ LI + Q+ + L + S KY + + +Q A + I
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY-ACSSI 214
Query: 86 DDTVRYLSLHDN------KYIRYFPGHTKK---------VNSLCLSPIDDTFISGSYDKT 130
D V D F H VNS+ SP + D
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 131 VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
+ W+L++ + I + + DT K
Sbjct: 275 ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 2e-33
Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 18/259 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFT 72
+ + + Y+ G + D+ IY+ + V + G + RF
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
Q ++ D T + + F GHT V SL L+P F+SG+ D + +
Sbjct: 153 DDNQIV---TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 133 LWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
LWD+R C+ H S I F P G F G + T +L+D+R+ D+ +
Sbjct: 210 LWDVREGMCRQTFTGHESDINAI-CFFPNGNAFATGSDDATCRLFDLRA-DQ---ELMTY 264
Query: 191 AAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ + T + FS G+ +L + +DA LAG N C T
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVT 321
Query: 250 PDSKYVISGSTDGRIHIWN 268
D V +GS D + IWN
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 2e-25
Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 17/224 (7%)
Query: 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143
+I + + + + R GH K+ ++ +S S D + +WD + N
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH 91
Query: 144 I--MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW-TG 200
+ S A+ P G G + +Y++++ + + + A + +
Sbjct: 92 AIPLRSSWVMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT--GYLSC 148
Query: 201 IKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
+F D + +++ S +D GQ T G + G + S PD++ +S
Sbjct: 149 CRFLDDNQ--IVT--SSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAPDTRLFVS 201
Query: 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
G+ D +W+ +G H S + I F P N A+
Sbjct: 202 GACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATG 244
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 5e-24
Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 91/303 (30%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
KI ++ + D LL+S S+D +++I+D
Sbjct: 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA---------------------- 92
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
P + V + +P ++ G D +++L++
Sbjct: 93 ----------------------IPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT- 128
Query: 140 NCQGIMHVSGSRPIA---------AFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFK 189
+V SR +A F + I V + D T L+D+ +
Sbjct: 129 ---REGNVRVSRELAGHTGYLSCCRFLDDNQI--VTSSGDTTCALWDIET---------- 173
Query: 190 FAAEKECDWTG-------IKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNN 239
++ +TG + + D + +S G+ + +D G C QT G +
Sbjct: 174 --GQQTTTFTGHTGDVMSLSLAPDTRLF-VS--GACDASAKLWDVREGMCRQTFTG---H 225
Query: 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMM 298
+ F P+ +GS D +++ ++ D + ++ F+ ++
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 299 ASA 301
+
Sbjct: 286 LAG 288
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 54/219 (24%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWD-----LR-----------SPNCQGIMHVS 148
+ C + I+ + D R+ LR + + + +S
Sbjct: 16 NQIRDARKACADA-TLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLL--LS 72
Query: 149 GSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSAD 206
S D + ++D + +N A W ++
Sbjct: 73 AS------------------QDGKLIIWDSYT------TNKVHAIPLRSSWVMTCAYAPS 108
Query: 207 GKYILISTNGSIIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
G Y+ +I ++ + + LAG + G F D++ +++ S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAG---HTGYLSCCRFLDDNQ-IVTSSGDT 164
Query: 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+W+ E G + H V ++ P + S
Sbjct: 165 TCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSG 202
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 5e-10
Identities = 22/183 (12%), Positives = 47/183 (25%), Gaps = 69/183 (37%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+R + F + I +I + +G + S+D ++D T
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--------- 263
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGS 126
S + S+ S + +G
Sbjct: 264 ------------------------YSHD---------NIICGITSVSFSK-SGRLLLAGY 289
Query: 127 YDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD-----------TIK 173
D +WD + G++ H + + +GV D +K
Sbjct: 290 DDFNCNVWDALKADRAGVLAGH------------DNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 174 LYD 176
+++
Sbjct: 338 IWN 340
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 4e-33
Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 67/309 (21%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT- 58
D +I+ K K + I+ + +S+D LL+S S+D + I+D G +T
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 59 ------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112
VF F S D++VR + K ++ P H+ V++
Sbjct: 104 KGHSNYVFC-------CNFNPQSNLI--VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 113 LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172
+ + +S SYD R+WD S C + + P V+
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPP-------------VSF--- 197
Query: 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232
+KFS +GKYIL +T + ++ +D G+CL+T
Sbjct: 198 ----------------------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
G N K C K+++SGS D ++IWN + V L H V + +
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACH 288
Query: 293 PKFNMMASA 301
P N++ASA
Sbjct: 289 PTENIIASA 297
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 7e-20
Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 68/280 (24%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D ++ S K K + +++ + +++ L++S S D+ + I+D + G +T+
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPI 118
+ V + F + S+ D R + ++ V+ + SP
Sbjct: 146 PAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP- 202
Query: 119 DDTFI-SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
+ +I + + D T++LWD C H + I A
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA-------------------- 242
Query: 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQT 232
+F GK+I +S GS ++ ++ + +Q
Sbjct: 243 ---NF----------------------SVTGGKWI-VS--GSEDNLVYIWNLQTKEIVQK 274
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGST--DGRIHIWNAE 270
L G + + P + S + D I +W ++
Sbjct: 275 LQGHTDVVIS---TACHPTENIIASAALENDKTIKLWKSD 311
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 8e-12
Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF---SKKYGVDLI 69
+ L ++ ++ + +S +G +++ + D+ + ++D G +T ++KY +
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-- 127
+ + S D+ V +L + ++ GHT V S P ++ S +
Sbjct: 244 FSVTGGKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 128 DKTVRLWDLRSPNC 141
DKT++LW +C
Sbjct: 302 DKTIKLWKS---DC 312
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-33
Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 66/298 (22%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
TD + I + G LL SCS D I ++D + RT
Sbjct: 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---------------------- 187
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
GH V+S+ + P D +S S DKT+++W++++
Sbjct: 188 ----------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGP------------F 185
C H R + + +G + N T++++ V + + K +
Sbjct: 226 CVKTFTGHREWVRMV-RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 186 S-NFKFAAEKECDWT-GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243
+ +++ E + K G ++L + I+ +D G CL TL G N
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG- 343
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
F K+++S + D + +W+ + + L+A H V ++ F+ + +
Sbjct: 344 --VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTG 398
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 37/235 (15%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ + GH V + P+ +S S D T+++WD + +
Sbjct: 83 GPLGQKRDPK-EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC-- 196
+ + H + I +FD G + TIKL+D + F EC
Sbjct: 142 FERTLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWDFQGF--------------ECIR 186
Query: 197 ------DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
+ + +G +I +S S I+ ++ G C++T G ++
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHI-VS--ASRDKTIKMWEVQTGYCVKTFTG---HREWVRMV 240
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
D + S S D + +W L +H V+ I + P+ + + +
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSIS 294
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 77/255 (30%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
F + + + + + DG L+ SCS D + ++ K + ++ V+ I +
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA---- 285
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
++ Y + +SGS DKT+++WD+
Sbjct: 286 ------------------PESSYS--SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 137 RSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194
+ C + H + VR
Sbjct: 326 STGMCLMTLVGHDNW---------------------------VRG--------------- 343
Query: 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
+ F + GK+IL + +R +D N +C++TL + F + Y
Sbjct: 344 ------VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS---LDFHKTAPY 394
Query: 255 VISGSTDGRIHIWNA 269
V++GS D + +W
Sbjct: 395 VVTGSVDQTVKVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 43/198 (21%)
Query: 121 TFISGSYDKTVRLWDLRSPNCQ---GIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLY 175
+ + + W R P G H P+ F P + TIK++
Sbjct: 81 SGGPLGQKRDPKEWIPRPPEKYALSG--H---RSPVTRVIFHPVFSVMVSASEDATIKVW 135
Query: 176 DVRSFDKGPFSNFKFAAEKEC--------DW-TGIKFSADGKYILISTNGS---IIRTFD 223
D + G + D I F GK + S S I+ +D
Sbjct: 136 DYET---G-----------DFERTLKGHTDSVQDISFDHSGKLL-AS--CSADMTIKLWD 178
Query: 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP 283
+C++T+ G +N S P+ +++S S D I +W + G+ V H
Sbjct: 179 FQGFECIRTMHGHDHNVSS---VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HR 234
Query: 284 SPVQTIQFNPKFNMMASA 301
V+ ++ N ++AS
Sbjct: 235 EWVRMVRPNQDGTLIASC 252
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA 81
+ G L+S S D I ++D G T+ V + F + +
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 356
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137
+ D T+R + + ++ H V SL ++GS D+TV++W+ R
Sbjct: 357 AD--DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 1e-30
Identities = 44/329 (13%), Positives = 98/329 (29%), Gaps = 41/329 (12%)
Query: 19 ENTDKITSIDYS--ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
E +KI I + + + + D I ++ + ++ K R
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT 150
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ D + S + HT +NS+ ++ +T++S + D + LW L
Sbjct: 151 TLRVPVFRPMDLMVEASPRR----IFANAHTYHINSISINSDYETYLS-ADDLRINLWHL 205
Query: 137 RSPNCQGIM----------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS------- 179
+ + F + TI+L D+R+
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265
Query: 180 ----FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235
+ SN F +E + +KFS G+Y++ S+ + ++T
Sbjct: 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQV 325
Query: 236 FLNNKGC------------PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP 283
+ E + V++GS + +++ + L+A
Sbjct: 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRE 384
Query: 284 SPVQTIQFNPKFNMMASACTNLAFWIPTY 312
+ P+ + + +
Sbjct: 385 NNKPRTVLKPRKVCASGKRKKDEISVDSL 413
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 1e-17
Identities = 39/309 (12%), Positives = 91/309 (29%), Gaps = 59/309 (19%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
D I++++++ G LL + + ++VI+ E ++ +Y V +H +
Sbjct: 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYL 87
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRS 138
S +I++ K+N + P + F+ + DKT++LW +
Sbjct: 88 KSLEIEE---------------------KINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126
Query: 139 PNCQGIMH----VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194
+ + + G + ++ R F
Sbjct: 127 RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH---------- 176
Query: 195 ECDWTGIKFSADGKYILISTNGSIIRTFDA-YNGQCLQTLAGFLNN----KGCPLEASFT 249
I ++D + L + + I + + + N A F
Sbjct: 177 TYHINSISINSDYETYLSADDLR-INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH 235
Query: 250 P-DSKYVISGSTDGRIHIW---------------NAEKGFKVCVLDADHPSPVQTIQFNP 293
P + S+ G I + + ++ S + ++F+
Sbjct: 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295
Query: 294 KFNMMASAC 302
M +
Sbjct: 296 SGRYMMTRD 304
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-09
Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 31/200 (15%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
++++ + + +G V ++ N
Sbjct: 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-------------------- 65
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS--ADGKYILISTNGSIIRTF 222
+S P ++ + E E I++ + L+STN I+ +
Sbjct: 66 ---HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW 122
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
G + + + + D + H
Sbjct: 123 KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA------H 176
Query: 283 PSPVQTIQFNPKFNMMASAC 302
+ +I N + SA
Sbjct: 177 TYHINSISINSDYETYLSAD 196
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 6e-06
Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 30/162 (18%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
F E I+ + +S G +++ + ++D + + +
Sbjct: 281 FSEIISSISDVKFSHSGRYMMTRD-YLSVKVWDLNMENRPVETYQVHEYL---------- 329
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ SL++N I C + D ++GSY+ R++D
Sbjct: 330 -----------RSKLCSLYENDCIFDK-------FECCWNGSDSVVMTGSYNNFFRMFDR 371
Query: 137 RSPNC-QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
+ ++P P + D I + +
Sbjct: 372 NTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-30
Identities = 34/312 (10%), Positives = 88/312 (28%), Gaps = 67/312 (21%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKK 63
+ + SY++ + + TS+ + + S+ I++++ +
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT------ 156
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
G + L +P++
Sbjct: 157 ------------------------------------FIKGIGAGGSITGLKFNPLNTNQF 180
Query: 124 -SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA---AFDPEGLIFGVGVNSDTIKLYDVRS 179
+ S + T RL D + + + G N + L ++
Sbjct: 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240
Query: 180 FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAG 235
+ K T + + + L + S+ ++ +D + +
Sbjct: 241 KELWNLRMHK-------KKVTHVALNPCCDWFLAT--ASVDQTVKIWDLRQVRGKASFLY 291
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT------I 289
L ++ A F+PD +++ I +++A + L HP
Sbjct: 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHRHFQHLTPIKA 350
Query: 290 QFNPKFNMMASA 301
++P++N++
Sbjct: 351 AWHPRYNLIVVG 362
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 40/267 (14%), Positives = 77/267 (28%), Gaps = 53/267 (19%)
Query: 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA 77
S+D SA ++++ +++ + + G + K V +
Sbjct: 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDW 264
Query: 78 AIHASTKIDDTVR---YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
+ A+ +D TV+ + Y H VN+ C SP D + + +R+
Sbjct: 265 FL-ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRV 322
Query: 134 WDLRSPNCQGIMHVSGSRPI-------AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ +C + R AA+ P + VG
Sbjct: 323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG-------------------- 362
Query: 187 NFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245
D + I FD +G+ + L ++ L
Sbjct: 363 ----------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLN 406
Query: 246 ASFTPDSKYVISGSTDGRIHIWNAEKG 272
F P + S I IW+ ++
Sbjct: 407 E-FNPMGDTLASAM-GYHILIWSQQEA 431
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-22
Identities = 36/236 (15%), Positives = 72/236 (30%), Gaps = 21/236 (8%)
Query: 81 ASTKIDDTVRYLS---LHD---NKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
+ L LH + ++ ++ SL P + + GS + L
Sbjct: 87 GRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIML 146
Query: 134 WDLRSPNCQGIMHVSG-SRPI--AAFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189
W+ + + G I F+P F T +L D + F
Sbjct: 147 WNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFA 203
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ + + SA + ++ N + + +G+ L L +K +
Sbjct: 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRM---HKKKVTHVALN 259
Query: 250 PDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDAD--HPSPVQTIQFNPKFNMMASAC 302
P + + + S D + IW+ + H PV F+P + +
Sbjct: 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ + +S DG L++ + +I +Y + + + +AA H
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL--IPHPHRHFQHLTPIKAAWH 353
Query: 81 ASTKI-------DDTVRYLSLHDNKYIR------------YFPGHTKKVNSLC-LSPIDD 120
+ D + + ++ + I + + ++SL +P+ D
Sbjct: 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413
Query: 121 TFISGSYDKTVRLWDLRSPNCQ 142
T S + +W + +
Sbjct: 414 TLASAM-GYHILIWSQQEARTR 434
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD-SKYVIS 257
G + L S + T D + + LQ A F ++ P V
Sbjct: 86 LGRASWPSVQQGL---QQSFLHTLD--SYRILQKAAPFDRRATS---LAWHPTHPSTVAV 137
Query: 258 GSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPK-FNMMASA 301
GS G I +WN K + + ++FNP N ++
Sbjct: 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 66/299 (22%), Positives = 117/299 (39%), Gaps = 37/299 (12%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+D++ ID+ +++ ++ I++ E R++ + V +F K I
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
S D +R + + + + F H + S+ + P +SGS D TV+LW+ +
Sbjct: 73 GSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 141 CQG---------IMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+M V AF+P + F G T+K++ + NF
Sbjct: 131 ALEQTFEGHEHFVMCV-------AFNPKDPSTFASGCLDRTVKVWSLGQ----STPNFTL 179
Query: 191 AAEKECDWTGIKFSA--DGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLE 245
+E + + D Y+ I+ S I+ +D C+ TL G ++N
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYM-IT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSF--- 233
Query: 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP--KFNMMASAC 302
A F P +ISGS DG + IWN+ L+ I +P + N +AS
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNYIASGF 291
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 52/202 (25%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162
F + +V + P + ++ Y V +W+ + + V+ +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP----------- 57
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
VR+ KF A +I++ ++ IR F
Sbjct: 58 --------------VRA---------------------GKFIARKNWIIVGSDDFRIRVF 82
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV-CVLDAD 281
+ G+ + + + P YV+SGS D + +WN E + + +
Sbjct: 83 NYNTGEKVVDFEAHPDYIRS---IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-G 138
Query: 282 HPSPVQTIQFNPK-FNMMASAC 302
H V + FNPK + AS C
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGC 160
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 40/282 (14%), Positives = 84/282 (29%), Gaps = 23/282 (8%)
Query: 13 VAKLFRENTDKITSIDYSA--DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIR 70
L + +DY D +I+ S+D I I+D + + T+ V
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDK 129
F H I S D T++ + K + ++ + P +I+ +D
Sbjct: 236 F-HPTLPII-ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Query: 130 TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNF 188
+ L + + G + + + I+ + D+
Sbjct: 294 GFTVLSLGNDEPTLSLDPVGKL---VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK 350
Query: 189 KFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
+ + + S +G+++ + +G + LA G +
Sbjct: 351 EL--GSVDVFPQSLAHSPNGRFVTVVGDGEYVIY---------TALAWRNKAFGKCQDFV 399
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTI 289
+ PDS G+I + K V S + +
Sbjct: 400 WGPDSNSYALIDETGQIKYYKNFKE--VTSWSVPMHSAIDRL 439
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-20
Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 26/298 (8%)
Query: 12 KVAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLI 69
+ + F + + + ++ D S D + ++ T T+ + + GV+ +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK 129
+ + D T++ + GH V+ P ISGS D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 130 TVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSD-TIKLYDVRS----FDKG 183
T+++W+ + + ++V R A P G + D + + +
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310
Query: 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243
P ++ K + I F+A + + + L P
Sbjct: 311 PVGKLVWSGGKNAAASDI-FTAVIRGNEEVEQDEPLS-------LQTKELGS---VDVFP 359
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +P+ ++V DG I+ A Q + P N A
Sbjct: 360 QSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYALI 410
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 34/292 (11%), Positives = 86/292 (29%), Gaps = 34/292 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ ++ + ++IS SED + I++ ++T+ I +
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
AS D+ LSL +++ K V S + S + +R +
Sbjct: 284 KNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAA----ASDIFTAVIRGNEE 338
Query: 137 RSPNCQGIMHV------SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+ + A P G V +Y ++ F +
Sbjct: 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVV-GDGEYVIYTALAWRNKAFGKCQ- 396
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ D + I+ + + ++ ++ F
Sbjct: 397 ---------DFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPM-----HSAIDRLF-- 440
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
S ++ +DG ++ ++ + G V +D + + + ++ ++
Sbjct: 441 -SGALLGVKSDGFVYFFDWDNGTLVRRIDVN----AKDVIWSDNGELVMIVN 487
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 42/278 (15%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRT 58
D ++ +YKV K ++ I G I+ D+ + +
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308
Query: 59 VFSKKYGVDLIRFTHAKQAAIH--ASTKIDDTVRY-----LSLHDNKYIRYFPGHTKKVN 111
+ V + ++ K AA + I LSL +
Sbjct: 309 L----DPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE----LGSVDVFPQ 360
Query: 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDT 171
SL SP + F++ D ++ + G + P+ + + +
Sbjct: 361 SLAHSP-NGRFVTVVGDGEYVIYTALA----WRNKAFGKCQDFVWGPDSNSYALIDETGQ 415
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231
IK Y A + G + + ++G + FD NG ++
Sbjct: 416 IKYYKNFKEVTSWSVPMHSAID---------RLFSGALLGVKSDGFV-YFFDWDNGTLVR 465
Query: 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269
+ + ++ + + V+ +T+ +
Sbjct: 466 RI------DVNAKDVIWSDNGELVMIVNTNSNGDEASG 497
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 226 NGQCLQTLAGFLNN-KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
+T + + KG F P +V++ GR+ IWN E +V + +
Sbjct: 2 KLDIKKTFSNRSDRVKGI----DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTET 56
Query: 285 PVQTIQFNPKFNMMASA 301
PV+ +F + N +
Sbjct: 57 PVRAGKFIARKNWIIVG 73
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 36/294 (12%), Positives = 77/294 (26%), Gaps = 54/294 (18%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK 63
D Y + K + D E QI Y +V
Sbjct: 375 GDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSV-PMH 433
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
+D + K D V + + +R + + S + +
Sbjct: 434 SAIDRLFSGAL------LGVKSDGFVYFFDWDNGTLVRRIDVN---AKDVIWSDNGELVM 484
Query: 124 SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG---VGVNSDTIK------- 173
+ + + ++ + D EG+ + S++I
Sbjct: 485 IVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGD 544
Query: 174 ------------------LYDVRSFDKGPF-------SNFKFAAEKECDWTGIKFSAD-G 207
Y++ + K + N + A++E G + S +
Sbjct: 545 VFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVL 604
Query: 208 KYILISTNG------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKY 254
++ ++ G + + L +A FL + EA + +PD
Sbjct: 605 EFQTLTLRGEIEEAIENVLP-NVEGKDSLTKIARFLEGQEYYEEALNISPDQDQ 657
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-28
Identities = 58/294 (19%), Positives = 99/294 (33%), Gaps = 60/294 (20%)
Query: 36 LISCSEDDQIVIYDCELGTNKRT-----------VFSKKYGVDLIRFTHAKQAAIHASTK 84
S ++ + G + + + +
Sbjct: 5 HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETV---------VTGS 55
Query: 85 IDDTVRYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNC 141
+DD V+ D + + GH V S+ +S S S D +RLWDL +
Sbjct: 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQ 114
Query: 142 QGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC--- 196
+ + + AF P+ G + + ++ V S +
Sbjct: 115 IKSIDAGPVDAWTL-AFSPDSQYLATGTHVGKVNIFGVES--------------GKKEYS 159
Query: 197 -----DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
+ I +S DGKY+ S G+ II FD G+ L TL G + +
Sbjct: 160 LDTRGKFILSIAYSPDGKYL-AS--GAIDGIINIFDIATGKLLHTLEG---HAMPIRSLT 213
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
F+PDS+ +++ S DG I I++ + L H S V + F P S+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSS 266
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-28
Identities = 50/310 (16%), Positives = 103/310 (33%), Gaps = 71/310 (22%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
D++++ + + + S+D S + S S D I ++D E G +
Sbjct: 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK 116
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
++ + + F+ Q + V + K K + S+ SP
Sbjct: 117 SIDAGPVDAWTLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174
Query: 118 IDDTFI-SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
D ++ SG+ D + ++D+ + + H
Sbjct: 175 -DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP------------------------- 208
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQ 231
+RS + FS D + + ++ S I+ +D +
Sbjct: 209 --IRS---------------------LTFSPDSQLL-VT--ASDDGYIKIYDVQHANLAG 242
Query: 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291
TL+G + L +F PD + +S S+D + +W+ V DH V +++
Sbjct: 243 TLSG---HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKY 298
Query: 292 NPKFNMMASA 301
N + + S
Sbjct: 299 NGNGSKIVSV 308
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 39/260 (15%), Positives = 84/260 (32%), Gaps = 63/260 (24%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
++ +S D L + + ++ I+ E G + ++ ++ + I ++ +
Sbjct: 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWD 135
AS ID + + K + GH + SL SP D + + S D ++++D
Sbjct: 178 --YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYD 234
Query: 136 LRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
++ N G + H S V +
Sbjct: 235 VQHANLAGTLSGHASW-----------------VLN------------------------ 253
Query: 194 KECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ F D + +S S ++ +D C+ T + +
Sbjct: 254 -------VAFCPDDTHF-VS--SSSDKSVKVWDVGTRTCVHTFFDHQDQVWG---VKYNG 300
Query: 251 DSKYVISGSTDGRIHIWNAE 270
+ ++S D IHI++
Sbjct: 301 NGSKIVSVGDDQEIHIYDCP 320
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-06
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 208 KYILISTNG-SIIRTFDAYNGQCLQTLAG---------FLNNKGCPLEASFTPDSKYVIS 257
+ ++ ++ G + + N +S+ V++
Sbjct: 2 HHHHHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTN--------KKENSETVVT 53
Query: 258 GSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNPKFNMMASA 301
GS D + +W L+ H V ++ + + AS+
Sbjct: 54 GSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASS 98
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 39/305 (12%), Positives = 96/305 (31%), Gaps = 67/305 (21%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
+ K +D+S + ++ ++ + +Y N
Sbjct: 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS------------------- 105
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLR 137
+ F H+ V ++ + D + SG + + +WD+
Sbjct: 106 ---------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 138 SPNCQGIMHVSGSRPIA----------AFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ + + A++ +F +S+ ++D+++ K
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA--KKEVI 202
Query: 187 NFKFAAEKEC---DWTGIKFSADGKYILISTNGS----IIRTFDAYNGQC-LQTLAGFLN 238
+ + + + +++ + + GS I +D N LQTL
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL--NQG 260
Query: 239 NKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-N 296
++ L + D ++S D + +WN E ++ A + +F P+ +
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-RGNWCFKTKFAPEAPD 319
Query: 297 MMASA 301
+ A A
Sbjct: 320 LFACA 324
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 36/271 (13%), Positives = 80/271 (29%), Gaps = 43/271 (15%)
Query: 21 TDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSK------KYGVDLIRF-- 71
D++ S+ ++ + S + I+D + + K + ++ +
Sbjct: 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224
Query: 72 THAKQAAIHASTKIDDTVR--YLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYD 128
++ + A + D ++ L + GH K + SL D +S D
Sbjct: 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD 284
Query: 129 KTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPF 185
TV LW+ S + F PE +F + I++ +++
Sbjct: 285 NTVLLWNPESAEQLSQFPARGNWCFKT-KFAPEAPDLFACASFDNKIEVQTLQNL----- 338
Query: 186 SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK----- 240
+ D + S ++ + + + + +
Sbjct: 339 ----------------TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382
Query: 241 GCPLE-ASFTPDSKYVISGSTDGRIHIWNAE 270
G P A + K V + I N +
Sbjct: 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 86 DDTVRYLSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI 144
V+ L + ++ + H K + + + S D ++ LW L + + +
Sbjct: 4 GSMVK---LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP 60
Query: 145 M--HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW-TG 200
+ S+ + I +++ +++LY + S +F
Sbjct: 61 IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF--SNHSSSVKT 118
Query: 201 IKFS-ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA--------SFTPD 251
+KF+ + N I +D + L + ++
Sbjct: 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL--TPGQSMSSVDEVISLAWNQS 176
Query: 252 SKYVI-SGSTDGRIHIWNAEKGFKVCVLDAD-----HPSPVQTIQFNP 293
+V S + IW+ + +V L + ++++P
Sbjct: 177 LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 21/181 (11%), Positives = 51/181 (28%), Gaps = 53/181 (29%)
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
G+ V+L + A+ + + V
Sbjct: 1 GAMGSMVKLAEFSRTATF------------AWSHDKIPLLV------------------- 29
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244
+ G + S + + + +A +
Sbjct: 30 -----------------SGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKF-N 71
Query: 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---HPSPVQTIQFNPK-FNMMAS 300
+ ++ ++K + +G + +++ + A H S V+T++FN K N++AS
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS 131
Query: 301 A 301
Sbjct: 132 G 132
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 43/332 (12%), Positives = 95/332 (28%), Gaps = 61/332 (18%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYS---ADGLLLISCSEDDQIVIYDCELGTNK 56
D I + K ++ + + ++ D + D I ++D
Sbjct: 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287
Query: 57 RTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH-------- 106
+ ++ G + I S +D T+ + L ++ ++ GH
Sbjct: 288 QKWTLDKQQLGNQQVGVVATGNGRI-ISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346
Query: 107 -------------------------TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ + SL S + S S+D T+++ +
Sbjct: 347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEF 405
Query: 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201
V A+ + +G V N D + + + D +
Sbjct: 406 GSQPKV------ASANNDGFTA-VLTNDDDLLILQSFTGD----IIKSVRLNSPGSAVSL 454
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
+ + + + D L+T + P S +P Y+ +G
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-----LRAKPSYISISPSETYIAAGDVM 509
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
G+I +++ + A S + I + P
Sbjct: 510 GKILLYDLQSREVKTSRWAFRTSKINAISWKP 541
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 42/297 (14%), Positives = 91/297 (30%), Gaps = 33/297 (11%)
Query: 20 NTDKITSIDYS--ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG--------VDLI 69
+ +T++ +S L S E +++++ +V + I
Sbjct: 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 122
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF--ISGSY 127
+ + D+ ++S + GH++++N+ L ++
Sbjct: 123 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGD 181
Query: 128 DKTVRLWDLRSPNCQGIMHV-SG-SRPI--AAFDP-EGLIFGVGVNSD-TIKLYDVRSFD 181
D +V + + F P G + V SD I +D +S +
Sbjct: 182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV-ITVGSDRKISCFDGKSGE 240
Query: 182 -KGPFSNFKFAAEKECDW-TGIKFS---ADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
E + + G F+ D + + IR +D +C+Q
Sbjct: 241 FLKYI-------EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 293
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
G + +IS S DG ++ + + + H + + NP
Sbjct: 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITALTVNP 349
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 43/306 (14%), Positives = 79/306 (25%), Gaps = 78/306 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ T + Y +
Sbjct: 18 RNFTTHLSYDPTTNAIAYPCGKSA------------------------------------ 41
Query: 81 ASTKIDDTVRYLSLHDNKY--IRYFPGH-TKKVNSLCLSPIDD--TFISGSYDKTVRLWD 135
VR L D+K + F GH + V ++ SPI SG V +W
Sbjct: 42 -------FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94
Query: 136 LRSPNCQGIMHVSGSRPIA---------AFDPEG-LIFGVGVNSD-TIKLYDVRSFD-KG 183
+ V+ ++D EG + VG D S + G
Sbjct: 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG 154
Query: 184 PFSNFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNN 239
S ++ + + + +
Sbjct: 155 EVSGHS-------QRINACHLKQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 240 KGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF--- 295
+ F+PDS ++VI+ +D +I ++ + G + ++ D PVQ F +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDS 264
Query: 296 NMMASA 301
A+
Sbjct: 265 QKFATV 270
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 4e-23
Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 52/303 (17%)
Query: 17 FRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ + +++S D G +I+ D +I +D + G + + + V F
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA--- 258
Query: 76 QAAIHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSL---CLSPIDDTFISGSY 127
+ S K D T+R + +K ++ + +++ + ++ + IS S
Sbjct: 259 -LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317
Query: 128 DKTVRLWDLRSPNCQGIM--HVSGSRPI--AAFDPEGLIFGVGVNSD--TIKLYDVRSFD 181
D T+ ++L + H ++ I +P LI G S I + S
Sbjct: 318 DGTLNFYELGHDEVLKTISGH---NKGITALTVNP--LISG----SYDGRIMEWSSSSMH 368
Query: 182 KGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
+ + + S +Y IS + ++ + +
Sbjct: 369 QD-----------HSNLIVSLDNSKAQEYSSISWDDTL-KVNGITKHEFGSQPKV----- 411
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
AS D + D + I + G + + + P ++ N +
Sbjct: 412 -----ASANNDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 465
Query: 301 ACT 303
T
Sbjct: 466 GNT 468
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 44/305 (14%), Positives = 80/305 (26%), Gaps = 82/305 (26%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
D I + + + +++++ I S+D S S S DD + +
Sbjct: 356 DGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQP----- 409
Query: 65 GVDLIRFTHAKQAAIH-----ASTKIDDTVRYLSLHDNKYIRYFPGH-TKKVNSLCLSPI 118
K A+ + A DD + L I+ + SL + +
Sbjct: 410 ----------KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV 459
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178
G+ + +L DL + I+ P G I LYD++
Sbjct: 460 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS-ISPSETYIAAGDVMGKILLYDLQ 518
Query: 179 SFDKGPFSNFKFAAEKEC---DWTG-------IKFSADGKYILISTNGSIIRTFDAYNGQ 228
S +E W I + K
Sbjct: 519 S--------------REVKTSRWAFRTSKINAISWKPAEKG------------------- 545
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288
+ V +GS D I I++ ++ K+ H V
Sbjct: 546 ----------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 589
Query: 289 IQFNP 293
+ +
Sbjct: 590 LLWET 594
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 24/204 (11%), Positives = 53/204 (25%), Gaps = 18/204 (8%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYD-KTVRLWDLRSPNCQGIMHVSG--SRPI--AAFDPE 159
L P + VR D ++ +G S + F P
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 160 --GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC--DW-TGIKFSADGKYILIST 214
G S + ++ + +E + + I + +G+ + +
Sbjct: 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
Query: 215 NGS--IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY-VISGSTDGRIHIWNAEK 271
G +G L ++G + ++ DG + +
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVSG---HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192
Query: 272 GFKVCVLDA--DHPSPVQTIQFNP 293
S V+ ++F+P
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSP 216
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 4 TDNVIRSYKV------AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
N I+ +K+ L K + I S + + +I++YD + K
Sbjct: 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT 524
Query: 58 TVFSK-KYGVDLIRFTHAKQAAIH--------ASTKIDDTVRYLSLHD-NKYIRYFPGHT 107
+ ++ ++ I + A++ A A+ +D + S+ K I+ H
Sbjct: 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584
Query: 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
VN+L T +S D ++ W++
Sbjct: 585 DGVNNLLWET-PSTLVSSGADACIKRWNV 612
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-28
Identities = 51/288 (17%), Positives = 89/288 (30%), Gaps = 77/288 (26%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
I ++D +G ++S D IV+YD E + + K
Sbjct: 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD------ 96
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS 138
H V ++ P D F S S+DKT+++WD +
Sbjct: 97 -------------------------VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGV---GVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
+ + + P + G ++L D++S
Sbjct: 132 LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--------------GS 177
Query: 196 C--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQ-CLQTLAGFLNNKGC 242
C + +S YIL + S ++ +D CL TL K
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILAT--ASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 243 PLEA------------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278
+E+ FT D ++++ TD R+ +WN+ G V
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-26
Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 35/237 (14%)
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRS 138
+ + T R L L NK H +N+L + P++ ++ SG D + L+DL +
Sbjct: 16 LRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN 75
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGV-GVN------------SD--TIKLYDVRSFDKG 183
+ Q I P+ + V V S T+K++D +
Sbjct: 76 SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA 135
Query: 184 PFSNFKFAAEKECDW-TGIKFSADGK--YILISTNGS---IIRTFDAYNGQCLQTLAGFL 237
NF+ + S ++ G+ ++ D +G C L G
Sbjct: 136 DVFNFE-------ETVYSHHMSPVSTKHCLVAV--GTRGPKVQLCDLKSGSCSHILQG-- 184
Query: 238 NNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
++ L S++P Y++ + S D R+ +W+ + + H +
Sbjct: 185 -HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-23
Identities = 42/283 (14%), Positives = 74/283 (26%), Gaps = 79/283 (27%)
Query: 21 TDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+I ++ +S +L + S D ++ ++D + + G A
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA----- 240
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRS 138
H KVN LC + D + + D +RLW+ +
Sbjct: 241 -----------------------NTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSN 276
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ + ++K +
Sbjct: 277 GENTLVNYGKVCNN---------------------------------------SKKGLKF 297
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
+ GS I + Y+G+ + L G C F + + + SG
Sbjct: 298 --TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC---CVFQSNFQELYSG 352
Query: 259 STDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
S D I W V D Q NP F S+
Sbjct: 353 SRDCNILAWVPSLYEPV----PDDDETTTKSQLNPAFEDAWSS 391
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 16/171 (9%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAA 78
K+ + +++DGL L++ D+++ +++ G N + ++FT +
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT----VS 300
Query: 79 IHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133
S++ T+ +++ + I GH K V+ SGS D +
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 134 WDLRSPNC-QGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDK 182
W + +P + + + F+K
Sbjct: 361 WVPSLYEPVPD--DDETTTKS-QLNPAFEDAWSSSDEEGGTSAWSHPQFEK 408
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 29/197 (14%)
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDP-EG--LIFGVGVNSD 170
+ ++D + T R+ L + + H G + +P EG ++ G
Sbjct: 10 TGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTL-DIEPVEGRYMLSG----GS 64
Query: 171 --TIKLYDVRS-------FDKGPFSNFKFAAEKECDW-TGIKFS-ADGKYILISTNGSII 219
I LYD+ + K S + + +++ D S+ +
Sbjct: 65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK---YVISGSTDGRIHIWNAEKGFKVC 276
+ +D Q + +P S V G+ ++ + + + G
Sbjct: 125 KVWDTNTLQTADVFNF----EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180
Query: 277 VLDADHPSPVQTIQFNP 293
+L H + + ++P
Sbjct: 181 ILQG-HRQEILAVSWSP 196
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 18/105 (17%)
Query: 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTP-DSKYVISGST 260
+ + + S R + + P + +Y++SG +
Sbjct: 9 QTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGG----GINTLDIEPVEGRYMLSGGS 64
Query: 261 DGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNP 293
DG I +++ E + H V+T+Q+ P
Sbjct: 65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 40/251 (15%), Positives = 75/251 (29%), Gaps = 40/251 (15%)
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ H + GH + + + + D S S D + +W
Sbjct: 2 GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS 61
Query: 137 RSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAA 192
+ G + H I D G S +IKL+DV + G
Sbjct: 62 LNGERLGTLDGHTGTIWSI-DVDCFTKYCVTG--SADYSIKLWDVSN---G--------- 106
Query: 193 EKECDWTG------IKFSADGKYILISTNGSI-----IRTFDAYNGQCLQTLAGFLNNKG 241
+ W ++FS G Y L + + I ++ L
Sbjct: 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166
Query: 242 CPLE----------ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291
+ A ++ KY+I+G DG+I ++ ++ H + +QF
Sbjct: 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF 226
Query: 292 NPKFNMMASAC 302
+P ++
Sbjct: 227 SPDLTYFITSS 237
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 40/282 (14%), Positives = 78/282 (27%), Gaps = 61/282 (21%)
Query: 24 ITSIDYSADGLLLISCSEDDQ-----IVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
+ +++S G ++ ++ I IY+ E + + TH A
Sbjct: 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177
Query: 79 IH-----------ASTKIDDTVRYLSLHDNK-YIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ D + + +N Y+ H K ++ + SP FI+ S
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEG--LIFGVGVNSDTIKLYDVRSFDK 182
D L D+ + P+ A P +I G G + +
Sbjct: 238 RDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295
Query: 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242
R + + + + G + G
Sbjct: 296 -----------------------------------EARFYHKIFEEEIGRVQG---HFGP 317
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
+ +P SG DG I + + EK + D + +
Sbjct: 318 LNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAA 359
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 3e-23
Identities = 47/322 (14%), Positives = 89/322 (27%), Gaps = 103/322 (31%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T I SID ++ S D I ++D G T
Sbjct: 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT---------------------- 111
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS-----YDKTVRLWD 135
+ V + SP + F++ ++ +++
Sbjct: 112 ----------------------WKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148
Query: 136 LRSPNCQGIMHVSGSRPI--------------AAFDPEG--LIFGVGVNSD--TIKLYDV 177
+ + + PI A + +G +I G I YDV
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG----HKDGKISKYDV 204
Query: 178 RSFDK--GPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
+ + + + ++FS D Y + S+ + D Q L+
Sbjct: 205 SNNYEYVDSIDLHE-------KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 235 GFLNNKGCPLE-ASFTPDSKYVISGS--------------TDGRIHIWNAEKGFKVCVLD 279
CPL A TP +++I G ++ ++ +
Sbjct: 258 T-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312
Query: 280 ADHPSPVQTIQFNPKFNMMASA 301
H P+ T+ +P+ AS
Sbjct: 313 -GHFGPLNTVAISPQGTSYASG 333
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 8e-16
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 17/155 (10%)
Query: 5 DNVIRSY------KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT 58
D I Y + + I+ + +S D I+ S D + D +
Sbjct: 196 DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255
Query: 59 ----------VFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT 107
V + K + L AK ++ + R+ + I GH
Sbjct: 256 YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142
+N++ +SP ++ SG D +RL
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-15
Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 59/195 (30%)
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ + L+ S + G RP+
Sbjct: 4 SHHHHHHSSGENLYFQGSHMKAIKLT--GHERPL-------------------------- 35
Query: 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGF 236
T +K++ +G + S S + + NG+ L TL G
Sbjct: 36 -------------------TQVKYNKEGDLL-FS--CSKDSSASVWYSLNGERLGTLDG- 72
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
+ G +KY ++GS D I +W+ G V P PV+ ++F+P N
Sbjct: 73 --HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW--KSPVPVKRVEFSPCGN 128
Query: 297 MMASACTNLAFWIPT 311
+ N+ +
Sbjct: 129 YFLAILDNVMKNPGS 143
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 59/336 (17%), Positives = 113/336 (33%), Gaps = 61/336 (18%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSAD---GLLLISCSEDDQIVIYDCELGTNKRTVF 60
TDN K ++ D I + +S G LI+ S + + ++ + + +T+
Sbjct: 23 TDNHNPM-KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQTIP 79
Query: 61 SKKYGVDLIRFTHAKQAAIHA------STKI-----DDTVRYLSLHDNKYIRYFPGHTKK 109
+ H + +K+ D T + L N+ I+ H
Sbjct: 80 KAQQM-------H--TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP 129
Query: 110 VNSLC--LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA--AFDPEGLIFGV 165
V ++ +P ++GS+DKT++ WD RS N ++ + R P + V
Sbjct: 130 VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-PERCYCADVIYPMAV---V 185
Query: 166 GVNSDTIKLYDVRSFD---KGPFSNFKFAAEKECDWTGIKFSADGK-----YILISTNGS 217
+ +Y + + + S K + D + + L S G
Sbjct: 186 ATAERGLIVYQLENQPSEFRRIESPLKHQH------RCVAIFKDKQNKPTGFALGSIEGR 239
Query: 218 I-IRTFDAYNG-QCLQTLAGFLNNKGCPLEA---------SFTPDSKYVISGSTDGRIHI 266
+ I + N + T +N +F P + + +DGR
Sbjct: 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299
Query: 267 WNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
W+ + K+ + P+ FN N+ A A
Sbjct: 300 WDKDARTKLKTSEQ-LDQPISACCFNHNGNIFAYAS 334
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 5e-17
Identities = 50/318 (15%), Positives = 94/318 (29%), Gaps = 73/318 (22%)
Query: 25 TSIDYSADGL-LLISCSEDDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIH-A 81
T+ + G + S + D+ + D E+ ++ ++ + F+
Sbjct: 6 TTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGC-------LSFSPPTLPGNFLI 58
Query: 82 STKIDDTVRYLSLHD-----NKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWD 135
+ + VR + + HT V +C S D + + + S DKT ++WD
Sbjct: 59 AGSWANDVR---CWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWD 114
Query: 136 LRSPNCQGI-MHVSGSRPIA-AFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFK 189
L S I H + + I P ++ G S T+K +D RS
Sbjct: 115 LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG----SWDKTLKFWDTRS---------- 160
Query: 190 FAAEKECDWT------GIKFSADGKYILISTNGSIIRTFDAYN--GQCLQTLAGFLNNKG 241
+++T + + N + + + K
Sbjct: 161 ----SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPL---KH 213
Query: 242 CPLEASFTPDSKYVI----SGSTDGRIHIWNAEKG--------FK------VCVLDADHP 283
+ D + GS +GR+ I FK
Sbjct: 214 QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273
Query: 284 SPVQTIQFNPKFNMMASA 301
V I F+P +A+
Sbjct: 274 YAVNGIAFHPVHGTLATV 291
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-14
Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 18/174 (10%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT--HAKQAAI 79
++ D ++ + + + + +R K+ + +
Sbjct: 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230
Query: 80 HASTKIDDTVR--YLSLHDNKYIRY-FPGHTKK------------VNSLCLSPIDDTFIS 124
A I+ V Y++ + + F H VN + P+ T +
Sbjct: 231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT 290
Query: 125 GSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
D WD + + F+ G IF + D K ++
Sbjct: 291 VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 34/284 (11%), Positives = 74/284 (26%), Gaps = 55/284 (19%)
Query: 5 DNVIRSYKVA----KLFRENTDKITSIDY--SADGLLLISCSEDDQIVIYDCELGTNKRT 58
D + + ++ ++ + +I + + + +++ S D + +D
Sbjct: 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166
Query: 59 VF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS 116
+ + Y D+I A+ A+ + V L +++ R + + +
Sbjct: 167 LQLPERCYCADVIY-----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF 221
Query: 117 P----IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172
F GS + V + + PN + F + S
Sbjct: 222 KDKQNKPTGFALGSIEGRVAIHYINPPNPA--------KDNFTF--KCHRSNGTNTSAPQ 271
Query: 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--IIRTFDAYNGQCL 230
+Y V I F + +T GS +D L
Sbjct: 272 DIYAVNG---------------------IAFHPVHGTL--ATVGSDGRFSFWDKDARTKL 308
Query: 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+T F + S+ K
Sbjct: 309 KTSEQLDQPISA---CCFNHNGNIFAYASSYDWSKGHEFYNPQK 349
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 9e-06
Identities = 14/150 (9%), Positives = 42/150 (28%), Gaps = 17/150 (11%)
Query: 15 KLFRENTDKITSIDYSADG----LLLISCSEDDQIVIYDCELGTNKRTVFSKK------Y 64
++ + + D S + ++ I+ + F+ K
Sbjct: 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265
Query: 65 GVDLIRFTHAKQA-AIH------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
+ +A A H A+ D + ++ + +++ C +
Sbjct: 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH 325
Query: 118 IDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147
+ F S + + +P + + +
Sbjct: 326 NGNIFAYASSYDWSKGHEFYNPQKKNYIFL 355
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 36/291 (12%), Positives = 77/291 (26%), Gaps = 74/291 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT----HAKQ 76
I S+ ++ DG +IS ++ ++++ GT + K+ G I
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 77 AA--------IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSY 127
+ + + GH ++ L + + + S S
Sbjct: 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASD 267
Query: 128 DKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185
D T+R+W + N Q H + S
Sbjct: 268 DGTLRIWHGGNGNSQNCFYGHSQS-----------------IVS---------------- 294
Query: 186 SNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGC 242
+ D K +IS S+ +R + L +
Sbjct: 295 ---------------ASWVGDDK--VIS--CSMDGSVRLWSLKQNTLLALSIV---DGVP 332
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ D + DG++++++ +K + + P
Sbjct: 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 42/296 (14%), Positives = 81/296 (27%), Gaps = 64/296 (21%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
D I S ++ D +L ++ + + + K + +R A A+
Sbjct: 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104
Query: 80 HASTKI------------------DDTVRYLSL--HDNKYIRYFPGHTKKVNSLCLSPID 119
+T + +R L + H + S+ +
Sbjct: 105 GKTTNQVTCLAWSHDGNSIVTGVENGELR---LWNKTGALLNVLNFHRAPIVSVKWNKDG 161
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
IS + LW++ S +G I A + D DV
Sbjct: 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINA---------ENHSGDGSLGVDV 212
Query: 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237
++ D K+++ G+ I + L G
Sbjct: 213 ------------------------EWVDDDKFVIPGPKGA-IFVYQITEKTPTGKLIG-- 245
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ G F +K ++S S DG + IW+ G H + + +
Sbjct: 246 -HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVG 299
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 55/275 (20%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ +++ D + I +Y T + + ++ F +
Sbjct: 202 HSGDGSLGVDVEWVDDDKF-VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ AS D T+R + F GH++ + S DD IS S D +VRLW L
Sbjct: 261 LLLSASD--DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DDKVISCSMDGSVRLWSL 317
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
+ + V G + +
Sbjct: 318 KQNTLLALSIVDGV---------------PIFA--------------------------- 335
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-QTLAGFLNNKGCPLEASFTPDSKYV 255
+ S DG+ ++ + +D ++L G N G + Y
Sbjct: 336 ----GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG--NRDGILNPLPIPLYASYQ 389
Query: 256 ISGSTDGRIHI-WNAEKGFKVCVLDADHPSPVQTI 289
S D + WN K+ V + V I
Sbjct: 390 SSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAI 423
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 35/281 (12%), Positives = 72/281 (25%), Gaps = 90/281 (32%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
E+ + D I S+D
Sbjct: 8 EDGASTVERETQEDDTNSIDSSDDL----------------------------------- 32
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLR 137
D V+ L + S +P+D++ + G + RL +
Sbjct: 33 -------DGFVKILKEI---------VKLDNIVSSTWNPLDESILAYGEKNSVARLARIV 76
Query: 138 SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ +G + + P L G ++ V
Sbjct: 77 ETDQEGKKYWKLTIIAELRHPFALSASSGKTTN-----QVTC------------------ 113
Query: 198 WTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
+ +S DG I ++ G +R ++ G L L ++ + + D +
Sbjct: 114 ---LAWSHDGNSI-VT--GVENGELRLWNK-TGALLNVLNF---HRAPIVSVKWNKDGTH 163
Query: 255 VISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNP 293
+IS + +WN G + + S + +
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 61/242 (25%)
Query: 4 TDNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT 58
I Y++ + I+ ++++ LL+S S+D + I+ G ++
Sbjct: 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC 284
Query: 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI 118
F GH++ + S
Sbjct: 285 --------------------------------------------FYGHSQSIVSASWVG- 299
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPI--AAFDPEGLIFGVGVNSDTIKL 174
DD IS S D +VRLW L+ + PI +G + V + +
Sbjct: 300 DDKVISCSMDGSVRLWSLKQNTLLALSIVD---GVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR-TFDAYNGQCLQTL 233
YD++ + ++ + Y N I +++ +
Sbjct: 357 YDLKK---LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413
Query: 234 AG 235
+
Sbjct: 414 SL 415
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 68/311 (21%)
Query: 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-------VFSK 62
K K+ + + D + + G ++S S+D+ + ++ G RT V+S
Sbjct: 107 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 165
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
+ ++I S D T++ + + I GHT V + L
Sbjct: 166 QMRDNII-----------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRV 212
Query: 123 ISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVR 178
+SGS D T+R+WD+ + C ++ HV+ R + +D ++ G + +K++D
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-QYDGRRVVSG----AYDFMVKVWDPE 267
Query: 179 SFDKGPFSNFKFAAEKEC--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYN 226
+ + C + ++F DG ++ +S GS+ IR +D
Sbjct: 268 T--------------ETCLHTLQGHTNRVYSLQF--DGIHV-VS--GSLDTSIRVWDVET 308
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPS 284
G C+ TL G + + ++SG+ D + IW+ + G + L H S
Sbjct: 309 GNCIHTLTGHQSLTSG---MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363
Query: 285 PVQTIQFNPKF 295
V +QFN F
Sbjct: 364 AVTCLQFNKNF 374
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 64/322 (19%), Positives = 122/322 (37%), Gaps = 59/322 (18%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
DN ++ + K + +T + S + ++IS S D + +++ E G T+
Sbjct: 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTL 195
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
+ V + H K+ S D T+R + + + GH V +
Sbjct: 196 YGHTSTVRCMHL-HEKRVV---SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--G 249
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLY 175
+SG+YD V++WD + C + H + + FD ++ G S +I+++
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSG----SLDTSIRVW 304
Query: 176 DVRSFDKGPFSNFKFAAEKEC--------DWTG-IKFSADGKYILISTNGS---IIRTFD 223
DV + C T ++ + IL+S G+ ++ +D
Sbjct: 305 DVET--------------GNCIHTLTGHQSLTSGMELKDN---ILVS--GNADSTVKIWD 345
Query: 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-- 281
GQCLQTL G ++ + +VI+ S DG + +W+ + G + L
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVT--CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Query: 282 --HPSPVQTIQFNPKFNMMASA 301
V I+ + + A
Sbjct: 404 GGSGGVVWRIRASNTKLVCAVG 425
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 3e-21
Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 53/273 (19%)
Query: 40 SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99
+ED+ + C+ + K+ V F H+ + A + + K
Sbjct: 53 AEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS--AYIRQHRIDTNWRRGELKS 110
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFD 157
+ GH V + CL + +SGS D T+++W + C + H G
Sbjct: 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS-QMR 168
Query: 158 PEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKEC--------DW-TGIKFSAD 206
+I G S T+K+++ + EC +
Sbjct: 169 DNIIISG----STDRTLKVWNAETG--------------ECIHTLYGHTSTVRCMHLHEK 210
Query: 207 GKYILISTNGSI---IRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTPDSKYVISGSTD 261
++S GS +R +D GQCL L G + D + V+SG+ D
Sbjct: 211 ---RVVS--GSRDATLRVWDIETGQCLHVLMGHVAAVR-------CVQYDGRRVVSGAYD 258
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+ +W+ E + L H + V ++QF+
Sbjct: 259 FMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGI 290
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 73/263 (27%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ + Y DG ++S + D + ++D E T T+ V ++F
Sbjct: 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV--- 293
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
S +D ++R + I GH + + L + +SG+ D TV++WD+++
Sbjct: 294 -SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ 350
Query: 141 CQGIM-----HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAE 193
C + H S + F+ +I SD T+KL+D+++
Sbjct: 351 CLQTLQGPNKHQSAVTCLQ-FNKNFVITS----SDDGTVKLWDLKT-------------- 391
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN--KGCPLEASFTPD 251
G+ ++ L + G +
Sbjct: 392 ---------------------------------GEFIRNLVTLESGGSGGVVWRIRASNT 418
Query: 252 SKYVISGSTDG----RIHIWNAE 270
GS +G ++ + + +
Sbjct: 419 KLVCAVGSRNGTEETKLLVLDFD 441
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 39/228 (17%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D+ + + +KV + W ++
Sbjct: 55 DNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVL 114
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC--------D 197
I G G + +T+K++ + +C
Sbjct: 115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT--------------GKCLRTLVGHTG 160
Query: 198 W-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
+ + I+IS GS ++ ++A G+C+ TL G + C K
Sbjct: 161 GVWSSQMRDN---IIIS--GSTDRTLKVWNAETGECIHTLYGHTSTVRC---MHLHE--K 210
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
V+SGS D + +W+ E G + VL H + V+ +Q++ + + S
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMG-HVAAVRCVQYDGR--RVVSG 255
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ +T+++ S+ + DG+ ++S S D I ++D E G T+ + +
Sbjct: 275 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI- 331
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPG---HTKKVNSLCLSPIDDTFISGSYDKTVRL 133
+ S D TV+ + + ++ G H V L + + I+ S D TV+L
Sbjct: 332 --L-VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 134 WDLRSPNCQGIMHVSGSR----PI--AAFDPEGLIFGVGVNSDT----IKLYDV 177
WDL++ + S + L+ VG + T + + D
Sbjct: 387 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
Query: 193 EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252
K F I + + + L G + +
Sbjct: 74 IKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDD----HVITCLQFCG 129
Query: 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303
++SGS D + +W+A G + L H V + Q N++ S T
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD--NIIISGST 177
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-27
Identities = 45/323 (13%), Positives = 107/323 (33%), Gaps = 41/323 (12%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLI-SCSEDDQIVIYDCELGTNKRTVFSK--KY 64
++SYK+ + ++TS+++ + S+ I+++D ++ +
Sbjct: 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD 119
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSPIDDTF 122
+ ++F + + I + + +S
Sbjct: 120 AITGMKFNQFNTNQL-FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQML 178
Query: 123 ISGSYDKTVRLWDLRSPNCQG-------IMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKL 174
+G + L L + H F+P + T+KL
Sbjct: 179 ATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHA-------EFNPRCDWLMATSSVDATVKL 231
Query: 175 YDVRSFDKGPFSNFKFAAEKE-CDW-TGIKFS-ADGKYILISTNGSIIRTFDAYNGQCLQ 231
+D+R+ + AE F+ D +L + + IR + +Y+
Sbjct: 232 WDLRNIKDKN----SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287
Query: 232 TLAGFLNNKGC---PLEASFTPDSKYVISG---------STDGRIHIWNAEKGFKVCVL- 278
+ + + P++A++ P +++G + I I++A G V L
Sbjct: 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLR 347
Query: 279 DADHPSPVQTIQFNPKFNMMASA 301
D + + +F+P +++AS
Sbjct: 348 DPNAAGIISLNKFSPTGDVLASG 370
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 47/288 (16%), Positives = 81/288 (28%), Gaps = 69/288 (23%)
Query: 2 KLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
L D +V +D S +L + ++++
Sbjct: 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL----------- 192
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
D I H KV +P
Sbjct: 193 ----------------------------------DGHEIFKEKLHKAKVTHAEFNP-RCD 217
Query: 122 FI--SGSYDKTVRLWDLRSPNCQG-IMHVSG-SRPI--AAFDPE-GLIFGVGVNSDTIKL 174
++ + S D TV+LWDLR+ + + +P+ A F+P + I++
Sbjct: 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277
Query: 175 YDVRSFDK------------GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
Y + K + K D D + + ++ + I +
Sbjct: 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLL-LNDKRT-IDIY 335
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270
DA +G + L N G F+P + SG I IWN E
Sbjct: 336 DANSGGLVHQLRDP-NAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-24
Identities = 40/250 (16%), Positives = 68/250 (27%), Gaps = 24/250 (9%)
Query: 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-S 124
+ I + Q+ + SL K R ++V SL P T +
Sbjct: 32 LHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAV 91
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSG-SRPIA--AFDPEG---LIFGVGVNSD--TIKLYD 176
GS + LWD N + G I F+ L S L D
Sbjct: 92 GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SIRGATTLRD 147
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
F + + + S + + + + +G +
Sbjct: 148 F---SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH 203
Query: 237 LNNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQTIQFNP 293
A F P +++ + S D + +W+ A H PV FNP
Sbjct: 204 KAKVTH---AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 294 KF-NMMASAC 302
+ +
Sbjct: 261 TDSTKLLTTD 270
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 57/311 (18%), Positives = 102/311 (32%), Gaps = 72/311 (23%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV------ 66
A + + + S+ +S DG L + + IYD E T RT+ + V
Sbjct: 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185
Query: 67 -DLIRFTHAKQAAIHASTKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPIDDT 121
++ +S + HD N I GH+ +V L D
Sbjct: 186 RHVL-----------SSGSRSGAIH---HHDVRIANHQIGTLQGHSSEVCGLAWRS-DGL 230
Query: 122 FI-SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG---LIFGVGVNSDTIKLY 175
+ SG D V++WD RS + H + + + A+ P L G G I +
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV-AWCPWQSNLLATGGGTMDKQIHFW 289
Query: 176 DV------RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYN 226
+ + D G T + +S K I +ST+G + + +
Sbjct: 290 NAATGARVNTVDAG------------SQVTSLIWSPHSKEI-MSTHGFPDNNLSIWSYSS 336
Query: 227 GQCLQTLAGFLNNKGCPLEA--------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278
+ + A + +PD + + + ++D + W G V
Sbjct: 337 SGLTKQ---------VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387
Query: 279 DADHPSPVQTI 289
+P +I
Sbjct: 388 IPITKTPSSSI 398
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 6e-21
Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 30/228 (13%)
Query: 86 DDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQG 143
+ V + + V S+ S D +F+ G + V ++D+ S
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 144 IMHVSGSRPIA-AFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDW-T 199
M +R +++ L G S I +DVR
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSG----SRSGAIHHHDVRI---ANHQIGTLQGHS--SEVC 221
Query: 200 GIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
G+ + +DG L S G +++ +DA + T + ++ P ++
Sbjct: 222 GLAWRSDGLQ-LAS--GGNDNVVQIWDARSSIPKFTKTN---HNAAVKAVAWCPWQSNLL 275
Query: 257 ---SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
G+ D +IH WNA G V D S V ++ ++P + S
Sbjct: 276 ATGGGTMDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEIMST 321
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 52/200 (26%)
Query: 104 PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163
PG L + ++ + ++ V +W+ S + + S +
Sbjct: 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYV---------- 137
Query: 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFD 223
+K+S DG ++ + ++ +D
Sbjct: 138 -----------------------------------ASVKWSHDGSFLSVGLGNGLVDIYD 162
Query: 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG-FKVCVLDADH 282
+ L+T+AG G + + + SGS G IH + ++ L H
Sbjct: 163 VESQTKLRTMAGHQARVG-----CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216
Query: 283 PSPVQTIQFNPKFNMMASAC 302
S V + + +AS
Sbjct: 217 SSEVCGLAWRSDGLQLASGG 236
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 35/161 (21%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADG---LLLISCSEDDQIVIYDCELGTNK 56
DNV++ S + + ++ + L + D QI ++ G
Sbjct: 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297
Query: 57 RTV----------FSKKYGVDLIRFTHAKQAAIHASTKIDDTVR---YLSLHDNKYIRYF 103
TV +S I + H D+ + Y S K
Sbjct: 298 NTVDAGSQVTSLIWSPHS--KEI-------MSTHGFP--DNNLSIWSYSSSGLTK-QVDI 345
Query: 104 PGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQG 143
P H +V LSP D + + + D+ ++ W + +
Sbjct: 346 PAHDTRVLYSALSP-DGRILSTAASDENLKFWRVYDGDHVK 385
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 40/286 (13%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ T ++ L E+++ ++D EL
Sbjct: 8 HENETLASLKSEAESLKGKLEEERAKLHDVELH--------------------------- 40
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
++ + V L K R GH KV + +S S D V +WD + N
Sbjct: 41 ---QVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN 97
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ + + A+ P G G + +Y + + K + ++
Sbjct: 98 KEHAVTMPCTWVMAC-AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY 156
Query: 199 -TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS--KYV 255
+ F+ IL ++ +D +GQ LQ+ G + L P
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPSETGNTF 213
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+SG D + +W+ G V + H S V ++++ P + AS
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASG 258
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-26
Identities = 55/281 (19%), Positives = 92/281 (32%), Gaps = 72/281 (25%)
Query: 5 DNVIRSYKVAKLFREN-----------TDKITSIDYSADGLLLISCSEDDQIVIYDCELG 53
DN Y + EN T+ +++ ++ + +++ S D ++D E G
Sbjct: 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186
Query: 54 TNKRT-------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH 106
++ V + ++ S D + + ++ F H
Sbjct: 187 QLLQSFHGHGADVLC-------LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239
Query: 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVG 166
VNS+ P D F SGS D T RL+DLR+ R +A + E +IFG
Sbjct: 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-----------DREVAIYSKESIIFGA- 287
Query: 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226
+ + FS G+ + N I +D
Sbjct: 288 --------------------------------SSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267
G + L G N +PD SGS D + +W
Sbjct: 316 GSRVSILFGHENRVST---LRVSPDGTAFCSGSWDHTLRVW 353
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 20/207 (9%), Positives = 51/207 (24%), Gaps = 50/207 (24%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
G + L ++ ++ +L D+ + F +
Sbjct: 6 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQV-----AERVEALGQFVMKTR--- 57
Query: 165 VGVNSDTIK--LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---I 219
T+K V + + D + I +S S +
Sbjct: 58 -----RTLKGHGNKVLC---------------------MDWCKDKRRI-VS--SSQDGKV 88
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
+D++ + + ++ P + G D + ++ +
Sbjct: 89 IVWDSFTTNKEHAVTM---PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145
Query: 280 -----ADHPSPVQTIQFNPKFNMMASA 301
A H + + F + +A
Sbjct: 146 KKKSVAMHTNYLSACSFTNSDMQILTA 172
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-26
Identities = 53/267 (19%), Positives = 92/267 (34%), Gaps = 63/267 (23%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHA 74
F +T + S+ +S+D ++S S D I +++ LG K TV + V +RF+
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPN 182
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
I S D V+ +L + K GHT +N++ +SP D + SG D L
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML 241
Query: 134 WDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
WDL + +N+
Sbjct: 242 WDLNEGKHLYTLDGGDI----------------INA------------------------ 261
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA------- 246
+ FS + Y L + G I+ +D + L +A
Sbjct: 262 -------LCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTS 311
Query: 247 -SFTPDSKYVISGSTDGRIHIWNAEKG 272
+++ D + + +G TD + +W G
Sbjct: 312 LAWSADGQTLFAGYTDNLVRVWQVTIG 338
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 60/290 (20%), Positives = 107/290 (36%), Gaps = 38/290 (13%)
Query: 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFTHAKQAAIHASTKIDD 87
S + +Y + T + T+ G V I T I S D
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMI-LSASRDK 61
Query: 88 TVR-----YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNC 141
T+ + R GH+ V+ + +S D F SGS+D T+RLWDL +
Sbjct: 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTT 120
Query: 142 QGIM--HVSGSRPIAAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE 195
H + AF + ++ G S TIKL++ K + E
Sbjct: 121 TRRFVGHTKDVLSV-AFSSDNRQIVSG----SRDKTIKLWNTLGVCK-----YTVQDESH 170
Query: 196 CDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
+W + ++FS + +I + +++ ++ N + G + G + +PD
Sbjct: 171 SEWVSCVRFSPNSSNPIIVS-CGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSPD 226
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
SG DG+ +W+ +G + L D + + F+P + +A
Sbjct: 227 GSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWLCAA 274
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 9e-13
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 30/154 (19%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT- 58
D +++ + K+ +T + ++ S DG L S +D Q +++D G + T
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Query: 59 -----VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR---------YLSLHDNKYIRYFP 104
+ + + F+ + A+ +++ L
Sbjct: 254 DGGDIINA-------LCFSPNRYWLCAAT---GPSIKIWDLEGKIIVDELKQEVISTSSK 303
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
+ SL S T +G D VR+W +
Sbjct: 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-26
Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 66/273 (24%)
Query: 2 KLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
+ D + ++ + ++ S D + SC D I ++D T R
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--- 178
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
F GHT + + +S D T
Sbjct: 179 -----------------------------------------FQGHTDGASCIDISN-DGT 196
Query: 122 FI-SGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ +G D TVR WDLR S + + P G VG+ S +++ V
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL-GYCPTGEWLAVGMESSNVEVLHVNK 255
Query: 180 FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAG 235
DK + +KF+ GK+ +S + + G +
Sbjct: 256 PDKYQLHLHE-------SCVLSLKFAYCGKWF-VS--TGKDNLLNAWRTPYGASIFQ--- 302
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
L + D KY+++GS D + ++
Sbjct: 303 -SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-22
Identities = 39/286 (13%), Positives = 76/286 (26%), Gaps = 74/286 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-----GVDLIRFTHAK 75
+ + ++ S + + + ++D NK V + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 76 QAAIHASTKIDDTVR--YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVR 132
I T+ L+ + +L +SP D S D +
Sbjct: 110 CTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIA 166
Query: 133 LWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+WDL + H G +
Sbjct: 167 VWDLHNQTLVRQFQGHTD-----------------GASC--------------------- 188
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
I S DG + + G + +R++D G+ LQ F
Sbjct: 189 ----------IDISNDGTKL-WT--GGLDNTVRSWDLREGRQLQQH-DF---TSQIFSLG 231
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ P +++ G + + + K K L H S V +++F
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAY 275
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 2e-22
Identities = 40/290 (13%), Positives = 78/290 (26%), Gaps = 65/290 (22%)
Query: 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+ S +ADG + + D I T + V + ++ +
Sbjct: 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNPTRHVY 67
Query: 80 HASTKIDDTVRYLSLHDNKYIR-----YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
V+ + + S L P T I G T+ +W
Sbjct: 68 TGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 135 DLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194
DL +P + ++ S P +
Sbjct: 125 DLAAPTPRIKAELTSSAP-------------ACYA------------------------- 146
Query: 195 ECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
+ S D K S I +D +N ++ G + C + D
Sbjct: 147 ------LAISPDSKVC-FS--CCSDGNIAVWDLHNQTLVRQFQGHTDGASC---IDISND 194
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +G D + W+ +G ++ D S + ++ + P +A
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVG 242
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 5e-21
Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 12/194 (6%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163
+K S ++ D + R ++
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66
Query: 164 GVGVNSDTIKLYDVRS-FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRT 221
+K++D+ +K P S ++ K DG +++ S +
Sbjct: 67 -YTGGKGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123
Query: 222 FDAYN--GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
+D + L + + +PDSK S +DG I +W+ V
Sbjct: 124 WDLAAPTPRIKAELTS---SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 280 ADHPSPVQTIQFNP 293
H I +
Sbjct: 181 -GHTDGASCIDISN 193
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN------KRTVFSKKYGVDLIRFTHA 74
T +I S+ Y G L E + + + V S ++F +
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS-------LKFAYC 276
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
+ ST D+ + I + V S +S D ++GS DK ++
Sbjct: 277 GKWF--VSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 135 DL 136
++
Sbjct: 334 EV 335
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 38/300 (12%), Positives = 77/300 (25%), Gaps = 82/300 (27%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
D + G L D +++ + + + + + I
Sbjct: 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM-LKRADYTAVDTAKLQMRRFIL 114
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+T + ++ L + N H ++ L P + S S D +++W ++
Sbjct: 115 GTT--EGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG 171
Query: 140 NCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ + H + V
Sbjct: 172 SNPRTLIGHRA-----------------TVTD---------------------------- 186
Query: 198 WTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGC------------ 242
I G+ + +S S+ IR ++ G + T N
Sbjct: 187 ---IAIIDRGRNV-LS--ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240
Query: 243 -PLEAS--------FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
E S F KYVI+G G I + N + L + ++ +
Sbjct: 241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG 300
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 5e-22
Identities = 37/294 (12%), Positives = 81/294 (27%), Gaps = 83/294 (28%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T IT D ++ ++++ Y
Sbjct: 5 TKTITVAHIQYDFKAVLEENDENDDEFY-------------------------------- 32
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL---CLSPIDDTFISGSYDKTVRLWDLR 137
+D + + H G+++ V++ + D L++
Sbjct: 33 --INVDKNLNEIKEHKIV----VLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTI 86
Query: 138 SPNCQGIMHVSGSRPIAAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAE 193
+ ++ + + + I G + IK+ D
Sbjct: 87 IRDGSKMLKRADYTAVDTAKLQMRRFILG----TTEGDIKVLDSNFN------------- 129
Query: 194 KEC--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKG 241
T +KF G+ + IS S ++ + +G +TL G ++
Sbjct: 130 -LQREIDQAHVSEITKLKFFPSGEAL-IS--SSQDMQLKIWSVKDGSNPRTLIG---HRA 182
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNP 293
+ + + V+S S DG I +W G + + + V +I
Sbjct: 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 3e-18
Identities = 35/288 (12%), Positives = 70/288 (24%), Gaps = 81/288 (28%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+T I G ++S S D I +++C GT T +
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT--------------------FN 220
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
D V ++L + T K N+L ++ +G + + ++ S
Sbjct: 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSK 279
Query: 140 NCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199
+ P F NS
Sbjct: 280 EQTIQL------------PSK--FTCSCNS------------------------------ 295
Query: 200 GIKFSA-DGKYILISTNGS---IIRTFDAYNGQCL--QTLAGFLNNKGCPLEASFTPDSK 253
+ + YI + G ++ +D + +C + L F
Sbjct: 296 -LTVDGNNANYI-YA--GYENGMLAQWDLRSPECPVGEFLIN---EGTPINNVYFAAG-A 347
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+S D I + + +P + + +
Sbjct: 348 LFVSSGFDTSIKLDIISDPESERPAI-EFETPTFLVSNDDAVSQFCYV 394
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 19/181 (10%), Positives = 57/181 (31%), Gaps = 18/181 (9%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTH 73
+L +T K ++++ G +I+ I +++ + SK + +
Sbjct: 241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG 300
Query: 74 AKQAAIHASTKIDDTVRY--LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
I + + + L + + +N++ + F+S +D ++
Sbjct: 301 NNANYI-YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSI 358
Query: 132 RLWDLRSPNCQGIMHV-SGSRPIAAFDPEG--LIFG----------VGVNSDTIKLYDVR 178
+L + P + + + D + ++ LY++
Sbjct: 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418
Query: 179 S 179
+
Sbjct: 419 N 419
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 21/197 (10%), Positives = 51/197 (25%), Gaps = 42/197 (21%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
TK + + + + + + N + + + + + G
Sbjct: 3 HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKN---LNEIKEHKIV--------VLG 51
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224
D G F G ++ + F+
Sbjct: 52 NSRGVDAG--------------------------KGNTFEKVGSHLYKARLDGHDFLFNT 85
Query: 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
+ L + + I G+T+G I + ++ + + A H S
Sbjct: 86 IIRDGSKMLKR----ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVS 140
Query: 285 PVQTIQFNPKFNMMASA 301
+ ++F P + S+
Sbjct: 141 EITKLKFFPSGEALISS 157
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 5 DNVIR------SYKVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKR 57
VI + +L + T S+ + + + E+ + +D L + +
Sbjct: 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD--LRSPEC 325
Query: 58 TVFSKKYG----VDLIRFTHAKQAAIHASTKIDDTVR---------YLSLHDNKYIRYFP 104
V ++ + F S+ D +++ + + +
Sbjct: 326 PVGEFLINEGTPINNVYFAAGALFV---SSGFDTSIKLDIISDPESERPAIEFETPTFLV 382
Query: 105 GHTKKVNSLCLSPIDDT---FISGSYDKTVRLWDLRSP 139
+ V+ C D++ + + L++L +P
Sbjct: 383 SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 12/236 (5%), Positives = 33/236 (13%), Gaps = 23/236 (9%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
T ++ K + + ++ + Y + L +
Sbjct: 40 RYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG 99
Query: 141 CQGI--MHVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE- 195
I H G+ + +
Sbjct: 100 AHAIAGRHTPGTFTN-QLQTSFSEPRLL--ILTDPRTDHQPIK---ESALGNIPTIAFCD 153
Query: 196 ---CDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNN--KGCPLEA 246
I A+ K G ++ + + +
Sbjct: 154 TDSPMRYVDIGIPANNKGKQSI--GCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Query: 247 SFT-PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ + + P
Sbjct: 212 EEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWT 267
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-17
Identities = 8/200 (4%), Positives = 20/200 (10%), Gaps = 66/200 (33%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLI 162
+T ++ + +
Sbjct: 23 LAADVHLGTKNCD-FQMERYVYKRRTDGIYIINLGKTWEKLQLAAR-------------- 67
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---II 219
+ + I+ D +
Sbjct: 68 ---VIVA-------------------------------IENPQDIIVQ-SA--RPYGQRA 90
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
A + K + +
Sbjct: 91 VLKFAQYTGAHAIAGR---HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIP 147
Query: 280 A------DHPSPVQTIQFNP 293
D P I
Sbjct: 148 TIAFCDTDSPMRYVDIGIPA 167
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 57/319 (17%), Positives = 99/319 (31%), Gaps = 58/319 (18%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ D L L + + +RT G H
Sbjct: 74 LNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLR---G-------HMTS 123
Query: 77 ---AAIHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ D +R + K++ GH V +L + +SGS D
Sbjct: 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTD 182
Query: 129 KTVRLWDLRSPNCQGIM--HVSGSRPIA-AFDPEG--LIFGVGVNSD--TIKLYDVRS-- 179
+TVR+WD++ C + H S R + ++ G S T+ ++ +
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKES 238
Query: 180 -FDKGPFSNFKFAAEKECDWTGIK-------------FSADGKYILISTNGS---IIRTF 222
+ + S G + +S GS + +
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV-VS--GSYDNTLIVW 295
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
D +CL L+G + + + K IS S D I IW+ E G + L H
Sbjct: 296 DVAQMKCLYILSGHTDRIYS---TIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GH 351
Query: 283 PSPVQTIQFNPKFNMMASA 301
+ V ++ + KF + SA
Sbjct: 352 TALVGLLRLSDKF--LVSA 368
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 76/290 (26%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH----- 80
I + +++ S D+ + ++ ++ + + +
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 81 --------------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
S D+T+ + K + GHT ++ S IS S
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 127 YDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
D T+R+WDL + + H L+ + ++ + V
Sbjct: 330 MDTTIRIWDLENGELMYTLQGH------------TALVGLLRLSDKFL----V------- 366
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244
+ +ADG IR +DA + + +
Sbjct: 367 --------------SA---AADGS----------IRGWDANDYSRKFSYH----HTNLSA 395
Query: 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+F ++SGS + + +I+N G V + ++ F K
Sbjct: 396 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 203 FSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
D + N I++ + TL G + + + YVI+G+ D
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMT----SVITCLQFEDNYVITGADD 141
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303
I ++++ + L H V +++ ++ S T
Sbjct: 142 KMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSGST 181
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T + + S L+S + D I +D + ++ + + F + +
Sbjct: 352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-RKFSYHHTNLSAITTFYVSDNILVS 408
Query: 81 ASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
S ++ +L K + ++ S+ T ++ ++
Sbjct: 409 GS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 460
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 13/125 (10%), Positives = 29/125 (23%), Gaps = 49/125 (39%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
K +T+ + +L+S S ++Q IY+ G L+
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK-------------LVHAN-- 428
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTV 131
++ S+ T ++ +
Sbjct: 429 ----------------------------ILKDADQIWSVNFKG--KTLVAAVEKDGQSFL 458
Query: 132 RLWDL 136
+ D
Sbjct: 459 EILDF 463
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 36/327 (11%), Positives = 86/327 (26%), Gaps = 56/327 (17%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK----------------Y 64
+ +T I + S+D QI++ + V Y
Sbjct: 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF--PGHTKKVNSLCLSPIDDTF 122
V + F + +++ + + V + + ++ V+S+C+
Sbjct: 171 AVRMRAFVNEEKSLL-VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL 229
Query: 123 ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI-----AAFDPEGLIFGVGVNSD-TIKLYD 176
I G+ + +WD+R PI F + + VG +S + +++
Sbjct: 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
Query: 177 VR--------------------SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216
+ F + + ++ K +L
Sbjct: 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEAT 349
Query: 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
S I F + + F P ++ + + V
Sbjct: 350 SSIVMFSLNELSSSKAVISPSRFS-----DVFIPTQ---VTANLTMLLRKMKRTSTHSVD 401
Query: 277 VLDADHPSPVQTIQF--NPKFNMMASA 301
H + +I + ++ +
Sbjct: 402 DSLY-HHDIINSISTCEVDETPLLVAC 427
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 72/285 (25%)
Query: 13 VAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF 71
+A L + ITS S + LI+ S+ I I++ + S
Sbjct: 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS--------SL 106
Query: 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
T+ + V + + P D F S D +
Sbjct: 107 TY-------------------------------DCSSTVTQITMIPNFDAFAVSSKDGQI 135
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
+ + + + I + + + Y VR
Sbjct: 136 IVLKVNHYQQESEVKFLNCECIRKIN---------LKNFGKNEYAVRM------------ 174
Query: 192 AEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
F + K +L++ TN S + FD + LQ + + G
Sbjct: 175 ---------RAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH-GAVSSICIDE 224
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295
+ +I G+T G I IW+ + +P+ ++ +
Sbjct: 225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 4e-17
Identities = 25/221 (11%), Positives = 61/221 (27%), Gaps = 58/221 (26%)
Query: 98 KYIRYFPGHTK-KVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAA 155
K I + + S +SP + I+GS +++W+L+ +
Sbjct: 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY-----SSSLT 107
Query: 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
+D V I + +S+
Sbjct: 108 YDCSS-----TVTQ-------------------------------ITMIPNFDAFAVSSK 131
Query: 216 GSIIRTFDAYNGQCLQT-------------LAGFLNNKGCPLEASFTPDSKYVI-SGSTD 261
I + Q L F N+ +F + K ++ + +
Sbjct: 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191
Query: 262 GRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASA 301
R+ I++ ++ +++ V +I + + ++
Sbjct: 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 2e-15
Identities = 25/256 (9%), Positives = 66/256 (25%), Gaps = 42/256 (16%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-----VDLIRFTHAK 75
++SI + +LI + I I+D R+ + +
Sbjct: 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS 273
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
+ S+ + + F ++ + PI + +
Sbjct: 274 VIVVGGSS--KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI------EKGLEELNFCG 325
Query: 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
+RS N + VS + + + +I ++ + E
Sbjct: 326 IRSLNALSTISVSNDKILLT----------DEATSSIVMFSL--------------NELS 361
Query: 196 CDWTGIKFSADGKYI----LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
I S + + ++R + + + + +
Sbjct: 362 SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS-ISTCEVDE 420
Query: 252 SKYVISGSTDGRIHIW 267
+ +++ G I I+
Sbjct: 421 TPLLVACDNSGLIGIF 436
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 201 IKFSADGK-YILISTNGSIIRTFD--AYNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVI 256
K + Y I+R+ + G+ + TL N ++ +P ++ Y+I
Sbjct: 23 FKILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLME--NEPNSITSSAVSPGETPYLI 80
Query: 257 SGSTDGRIHIWNAEKGFKV----CVLDADHPSPVQTIQFNPKFNMMASA 301
+GS G I IWN ++ L D S V I P F+ A +
Sbjct: 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-24
Identities = 46/266 (17%), Positives = 82/266 (30%), Gaps = 60/266 (22%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
F + + S+D ++IS S D I ++ G T+ V +R ++
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 77 AAIH----ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTV 131
A S D V+ +L+ + F GH +N+L SP D T I S D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEI 220
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
LW+L + + V S
Sbjct: 221 MLWNLAAKKAMYTLSAQDE----------------VFS---------------------- 242
Query: 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA----- 246
+ FS + ++ + + I+ F + L E
Sbjct: 243 ---------LAFSPNRYWL-AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKG 272
+++ D + + +G TD I +W
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 8e-23
Identities = 55/295 (18%), Positives = 97/295 (32%), Gaps = 70/295 (23%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+TS+ S LL+S S D ++ + +K+GV + F
Sbjct: 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD-------DQKFGVPVRSFK------- 62
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRS 138
GH+ V L+ D + S S+DKT+RLWD+ +
Sbjct: 63 -------------------------GHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVAT 96
Query: 139 PNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
H S + D + + G TIK++ ++
Sbjct: 97 GETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLATL-------LGHN 148
Query: 197 DW-TGIKFS------ADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
DW + ++ D I IS +++ ++ Q G +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTI-IS--AGNDKMVKAWNLNQFQIEADFIG---HNSNINTL 202
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +PD + S DG I +WN + L V ++ F+P +A+A
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--SAQDEVFSLAFSPNRYWLAAA 255
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 7e-18
Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 47/192 (24%)
Query: 103 FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161
GH V SL S + +S S DKT+ W L + + G P+ +F +G
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-----FG-VPVRSF--KG- 63
Query: 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRT 221
+S V+ +ADG Y L ++ +R
Sbjct: 64 ------HSHI-----VQD---------------------CTLTADGAYALSASWDKTLRL 91
Query: 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281
+D G+ Q G +K + + +ISGS D I +W KG + L
Sbjct: 92 WDVATGETYQRFVG---HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-G 146
Query: 282 HPSPVQTIQFNP 293
H V ++ P
Sbjct: 147 HNDWVSQVRVVP 158
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 40/307 (13%), Positives = 88/307 (28%), Gaps = 78/307 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I+ ++ D + C + ++ IY+ +
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ----------------------- 44
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+ H +V + +P D I + D+ +W L+
Sbjct: 45 -------------------VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR 84
Query: 140 NCQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
+ + + +R + P F VG S I + + +
Sbjct: 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-- 142
Query: 197 DW-TGIKFSADGKYILISTNGS---IIRTFDAY------------------NGQCLQTLA 234
+ + + + + GS R F AY G+ + +
Sbjct: 143 STVLSLDWHPNSVLL-AA--GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+ G F+ + V S D + + +A+K V L A P+ + F +
Sbjct: 200 S---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETLPLLAVTFITE 255
Query: 295 FNMMASA 301
+++A+
Sbjct: 256 SSLVAAG 262
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 7e-22
Identities = 45/317 (14%), Positives = 93/317 (29%), Gaps = 77/317 (24%)
Query: 5 DNVIRSYKVA-------KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
++ + Y+ + +E+ ++T +D++ D +++C D ++ + T K
Sbjct: 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
T + + +P
Sbjct: 89 T------------------------------------------LVILRINRAARCVRWAP 106
Query: 118 IDDTFISGSYDKTVRLWDLRSPNCQGIM------HVSGSRPIAAFDPEGLIFGVGVNSD- 170
+ F GS + + + N + S + + P ++ G S
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAG--SCD 163
Query: 171 -TIKLYDVR------------SFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNG 216
+++ K PF F + C W G+ FSA+G + ++
Sbjct: 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223
Query: 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
S + DA + TLA L +F +S V +G D ++ +
Sbjct: 224 STVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKL 279
Query: 277 VLDADHPSPVQTIQFNP 293
P Q+ Q
Sbjct: 280 SFGGRLDVPKQSSQRGL 296
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-21
Identities = 37/259 (14%), Positives = 72/259 (27%), Gaps = 45/259 (17%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ S+D+ + +LL + S D + I+ +
Sbjct: 142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-------------------------- 175
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ T + + + V+ +C S S+D TV L D
Sbjct: 176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235
Query: 141 CQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ ++ + P+ F E + G + L+ S G S F +
Sbjct: 236 A--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS-AAGKLS---FGGRLDVP 288
Query: 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI- 256
+ + + + A G L +L +K + S K
Sbjct: 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL-----HKNSVSQISVLSGGKAKCS 343
Query: 257 ---SGSTDGRIHIWNAEKG 272
+ DG + IW+
Sbjct: 344 QFCTTGMDGGMSIWDVRSL 362
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-14
Identities = 20/186 (10%), Positives = 54/186 (29%), Gaps = 35/186 (18%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSG-SRPI--AAFDPEG 160
+ ++ + D T I + V +++ + + + + + P+
Sbjct: 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 64
Query: 161 --LIFGVGVNSD--TIKLYDVRSFD---KGPFSNFKFAAEKECDWTGIKFSADGKYILIS 213
++ ++ ++ AA ++++ + K
Sbjct: 65 NRIVTC----GTDRNAYVWTLKGRTWKPTLVILRINRAA------RCVRWAPNEKKF-AV 113
Query: 214 TNGS---IIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHI 266
GS +I C + L + P+S + +GS D + I
Sbjct: 114 --GSGSRVISICYFEQENDWWVCKHIKKPI---RSTVLSLDWHPNSVLLAAGSCDFKCRI 168
Query: 267 WNAEKG 272
++A
Sbjct: 169 FSAYIK 174
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-11
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 8/126 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
T + ++ + + L+ + D V++ + K + F + V
Sbjct: 240 LASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLT 297
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP----IDDTFISGSYDKTVR 132
A S + H V+ + + F + D +
Sbjct: 298 ARERFQNLDKKASSEGSAAAGAGLD--SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355
Query: 133 LWDLRS 138
+WD+RS
Sbjct: 356 IWDVRS 361
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 42/308 (13%), Positives = 94/308 (30%), Gaps = 62/308 (20%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-------VFSKKYGVDLIRFTHAKQAA 78
+ D + LL I I + + + ++F
Sbjct: 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE-------LKFHPRDPNL 130
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFP---GHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
+ S D +R ++ + + F GH +V S + + +S D +++LW
Sbjct: 131 L-LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
Query: 136 LRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
+ S + ++P S I D + +
Sbjct: 190 INSKRMMNAIKESY-------DYNPNKTNRPFI--SQKIHFPDFSTR------------D 228
Query: 194 KECDW-TGIKFSADGKYIL-ISTNGSI---------IRTFDAYNGQCLQTLAGFLNNKGC 242
++ +++ G IL S +I + T+ G + C
Sbjct: 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC 286
Query: 243 PLEA-SFTPDS--KYVISGSTDGRIHIWNAE----KGFKVCVLDA-DHPSPVQTIQFNPK 294
+ F+ D K + G+ G++++W+ E K L + ++ F+
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346
Query: 295 FNMMASAC 302
+++ + C
Sbjct: 347 SSILIAVC 354
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 8e-23
Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 47/302 (15%)
Query: 9 RSYK-VAKLFRENTDKITSI---DYSADGLLLISCSEDDQ-IVIYDCELGTNKRTV---- 59
S+K V L ++ + + +S +G L+ + + +Y+C R +
Sbjct: 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV 64
Query: 60 -FSKKYGVDLIRFTHAKQAAIH--ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS 116
+T+ + A +R ++ + I+++ GH +N L
Sbjct: 65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 124
Query: 117 PIDDTFI-SGSYDKTVRLWDLRSPNCQGIMH-VSG-SRPI--AAFDPEGLIFGVGVNSDT 171
P D + S S D +RLW++++ I V G + A +D G +
Sbjct: 125 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 184
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDWT---GIKFSADGKYILISTNGSIIRTFDAYNGQ 228
+KL+ + S K ++ + + I D
Sbjct: 185 LKLWRINS--------------KRMMNAIKESYDYNPNKTNRPFISQ--KIHFPDFSTRD 228
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288
+ ++S S + I W K S V
Sbjct: 229 IHRNYVD-----------CVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277
Query: 289 IQ 290
+
Sbjct: 278 LG 279
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 40/256 (15%), Positives = 71/256 (27%), Gaps = 55/256 (21%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
D++ S DY G ++SC D + ++ + K D + K
Sbjct: 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYD---YNPNKT--NR 212
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
I + + H V+ + D +S S + + W
Sbjct: 213 PF--ISQKIHFPDFSTRD------IHRNYVDCVRWLG--DLILSKSCENAIVCWKPGKME 262
Query: 141 CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG 200
D IK + G F +CD
Sbjct: 263 DDI--------------------------DKIKPSESNVTILGRFD------YSQCDIWY 290
Query: 201 IKFSAD--GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE---ASFTPDSKYV 255
++FS D K + + + +D + L + C SF+ DS +
Sbjct: 291 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350
Query: 256 ISGSTDGRIHIWNAEK 271
I+ D I W+ +
Sbjct: 351 IAVCDDASIWRWDRLR 366
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 59/210 (28%)
Query: 105 GHTKKVNSLC---LSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG 160
H + + + S D + + V L++ S ++ +
Sbjct: 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL-------------QS 62
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK---YILISTNGS 217
D + + ++ D +L
Sbjct: 63 -------YVDADADENFYT---------------------CAWTYDSNTSHPLLAV--AG 92
Query: 218 ---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGF 273
IIR + QC++ G + E F P D ++S S D + +WN +
Sbjct: 93 SRGIIRIINPITMQCIKHYVG---HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 274 KVCVLDAD--HPSPVQTIQFNPKFNMMASA 301
V + H V + ++ + S
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSC 179
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 39/293 (13%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVF--- 60
R K L +T + I + + ++ S SED +++++ G +
Sbjct: 65 GKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124
Query: 61 ------SKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSLHDNKYIRYFP--GHTKKVN 111
+K+ V ++ + A+ + S D+ + + + H +
Sbjct: 125 ITLEGHTKR--VGIVAWHPTAQN--VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSGSRPI-AAFDPEGLIFGVGVN 168
S+ S + DK VR+ + R G+RP+ A F EG I G +
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 169 --SD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTNG-SIIR 220
S+ + L+D + + + + +E D + F D + + G S IR
Sbjct: 241 RMSERQVALWDTKHLE-------EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293
Query: 221 TFDAYNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
F+ + L L+ F + K + + + +
Sbjct: 294 YFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNKCEIARFYKLHER 343
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 7e-17
Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 46/189 (24%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP 158
+ GHT V + P +D I SGS D TV +W++ G + +P
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD----------GGLVLPLREP 123
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI 218
+ G ++ V + + + +L+S
Sbjct: 124 VITLEG---HTKR-----VGI---------------------VAWHPTAQNVLLS--AGC 152
Query: 219 ---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
I +D G + TL + ++ D + + D R+ + KG V
Sbjct: 153 DNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Query: 276 CVLDADHPS 284
D H
Sbjct: 212 AEKDRPHEG 220
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 34/229 (14%)
Query: 21 TDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRT---------VFSKKYGVDLIR 70
T ++ + + +L+S D+ I+++D G T ++S + D
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190
Query: 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK--KVNSLCLSPIDDTFISG--- 125
++ D VR + + + + +G
Sbjct: 191 I---------CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR 241
Query: 126 SYDKTVRLWDLRSPNCQGIMHVSGSRP---IAAFDPEG-LIFGVGVNSDTIKLYDVRSFD 181
++ V LWD + + + + FDP+ +++ G +I+ +++ S
Sbjct: 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-- 299
Query: 182 KGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQC 229
+ + G+ + K L I R + + +C
Sbjct: 300 -EAPFLHYLSMFSSKESQRGMGYM--PKRGLEVNKCEIARFYKLHERKC 345
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 23 KITSIDYSADGLLLISC---SEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQA 77
+ + ++G +L + + Q+ ++D + ++ GV L F
Sbjct: 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281
Query: 78 AIHASTKIDDTVRYLSLHDNK-YIRYFPGHTKK--VNSLCLSPIDDTFISGSYDKTVRLW 134
++ K D ++RY + ++ Y + K + P + + + R +
Sbjct: 282 -VYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP--KRGLEVNKCEIARFY 338
Query: 135 DLRSPNCQGI 144
L C+ I
Sbjct: 339 KLHERKCEPI 348
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 201 IKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA--------SFT 249
I + ++ S GS + ++ +G + L + LE ++
Sbjct: 87 IAWCPHNDNVIAS--GSEDCTVMVWEIPDGGLVLPLREPV----ITLEGHTKRVGIVAWH 140
Query: 250 PDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASAC 302
P ++ V+ S D I +W+ G V L D HP + ++ ++ ++ ++C
Sbjct: 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 70/299 (23%), Positives = 115/299 (38%), Gaps = 66/299 (22%)
Query: 15 KLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH 73
R +TD +T+I D +++S S D I+++ K YGV R T
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD-------DKAYGVAQRRLT- 427
Query: 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVR 132
GH+ V + LS D F SGS+D +R
Sbjct: 428 -------------------------------GHSHFVEDVVLSS-DGQFALSGSWDGELR 455
Query: 133 LWDLRSPNCQGIM--HVSGSRPIAAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFS 186
LWDL + H + AF + ++ S TIKL++ K S
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSV-AFSLDNRQIVSA----SRDRTIKLWNTLGECKYTIS 510
Query: 187 NFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGC 242
E DW + ++FS + I + S ++ ++ N + TLAG + G
Sbjct: 511 E---GGEGHRDWVSCVRFSPNTLQPTIVS-ASWDKTVKVWNLSNCKLRSTLAG---HTGY 563
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +PD SG DG + +W+ +G K+ L+A + S + + F+P + +A
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-N-SVIHALCFSPNRYWLCAA 620
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 54/276 (19%), Positives = 95/276 (34%), Gaps = 71/276 (25%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFT 72
F +T + S+ +S D ++S S D I +++ LG K T+ G V +RF+
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFS 526
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTV 131
S D TV+ +L + K GHT V+++ +SP D + SG D V
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVV 585
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
LWDL + + +++
Sbjct: 586 LLWDLAEGKKLYSLEANSV----------------IHA---------------------- 607
Query: 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA----- 246
+ FS + Y L + I+ +D + ++ L L + +
Sbjct: 608 ---------LCFSPNR-YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657
Query: 247 -----------SFTPDSKYVISGSTDGRIHIWNAEK 271
+++ D + SG TDG I +W +
Sbjct: 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 55/300 (18%), Positives = 103/300 (34%), Gaps = 72/300 (24%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ + + S+DG +S S D ++ ++D G + R V + F+ + +
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 81 ASTKIDDTVR---YLSLHDNKYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVRLWD 135
AS D T++ L GH V+ + SP + T +S S+DKTV++W+
Sbjct: 490 ASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 136 LRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
L + + + H +G V++
Sbjct: 548 LSNCKLRSTLAGH-TGY----------------VST------------------------ 566
Query: 194 KECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFT 249
+ S DG S G ++ +D G+ L +L + A F+
Sbjct: 567 -------VAVSPDGSLC-AS--GGKDGVVLLWDLAEGKKLYSLEA-----NSVIHALCFS 611
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVL--DADHPSPVQTIQFNPKFNMMASACTNLAF 307
P+ ++ + + + I IW+ E V L D + CT+L +
Sbjct: 612 PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-13
Identities = 31/209 (14%), Positives = 61/209 (29%), Gaps = 24/209 (11%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS----PNCQGIMHVSGSRPIAAFDPEG 160
K + ++ L ++ + + + PN + + A +
Sbjct: 294 NKDKPLGAVALKSYEEELAKDPRIAA-TMENAQKGEIMPNIPQMSAFWYAVRTAVIN--- 349
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--- 217
G + L ++ T I D I++S S
Sbjct: 350 --AASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVS--ASRDK 405
Query: 218 IIR-----TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
I D G + L G + + + D ++ +SGS DG + +W+ G
Sbjct: 406 SIILWKLTKDDKAYGVAQRRLTG---HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462
Query: 273 FKVCVLDADHPSPVQTIQFNPKFNMMASA 301
H V ++ F+ + SA
Sbjct: 463 VSTRRFV-GHTKDVLSVAFSLDNRQIVSA 490
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 22/198 (11%), Positives = 58/198 (29%), Gaps = 71/198 (35%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D ++ + K+ +T ++++ S DG L S +D ++++D G +
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
++ +++LC SP +
Sbjct: 599 -------------------------------------------LEANS-VIHALCFSP-N 613
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFG--VGVNS------ 169
++ + + +++WDL S + + + A + S
Sbjct: 614 RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673
Query: 170 ----------DTIKLYDV 177
I+++ +
Sbjct: 674 GSTLFSGYTDGVIRVWGI 691
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 3e-23
Identities = 30/330 (9%), Positives = 80/330 (24%), Gaps = 88/330 (26%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+++ +++ ++ + +Q+ +Y+ + K
Sbjct: 3 TSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH--------------- 47
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
R F H K V + +P + ++ S D+
Sbjct: 48 ---------------------------ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80
Query: 133 LWDLRSPN-----------CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
+++ R + V + P F VG + I + +
Sbjct: 81 VYEKRPDGTWKQTLVLLRLNRAATFV-------RWSPNEDKFAVGSGARVISVCYFEQEN 133
Query: 182 KGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFL 237
S + + + + L + G AY +
Sbjct: 134 DWWVSKHLKRPLR--STILSLDWHPNNVL-LAA--GCADRKAYVLSAYVRDVDAKPEASV 188
Query: 238 NNKGCPLEA--------------SFTPDSKYVISGSTDGRIHIWNAEKG---FKVCVLDA 280
P F+P + D + I + +
Sbjct: 189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248
Query: 281 DHPSPVQTIQFNPKFNMMASA--CTNLAFW 308
P++++ + + ++A+ + +
Sbjct: 249 LSQLPLRSLLWANESAIVAAGYNYSPILLQ 278
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-19
Identities = 37/336 (11%), Positives = 86/336 (25%), Gaps = 81/336 (24%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
N + +K A+ F ++ +T +D++ +++CS+D +Y+
Sbjct: 32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--- 88
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
K + + SP
Sbjct: 89 --------------------------------------TWKQTLVLLRLNRAATFVRWSP 110
Query: 118 IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI----------AAFDPEGLIFGVGV 167
+D F GS + + + N + S+ + + P ++ G
Sbjct: 111 NEDKFAVGSGARVISVCYFEQENDWWV-----SKHLKRPLRSTILSLDWHPNNVLLAAG- 164
Query: 168 NSD--TIKLYDV--RSFDKGPFSNFKFAAEKEC---------DW-TGIKFSADGKYILIS 213
+ R D P ++ + W + FS G + +
Sbjct: 165 -CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA 223
Query: 214 TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKG 272
+ S + + + PL + + +S V +G + + +
Sbjct: 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-NYSPILLQGNES 282
Query: 273 FKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW 308
D D + + ++F
Sbjct: 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-13
Identities = 34/290 (11%), Positives = 75/290 (25%), Gaps = 60/290 (20%)
Query: 5 DNVIR---------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN 55
VI + L R I S+D+ + +LL + D + + +
Sbjct: 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDV 180
Query: 56 KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115
+ +G L T + V+++
Sbjct: 181 DAKPEASVWGSRLPFNT---------------------------VCAEYPSGGWVHAVGF 213
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSG-SRPI--AAFDPEGLIFGVGVNSD 170
SP + +D +V + +P ++ V P+ + E I G +
Sbjct: 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG-YNY 272
Query: 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230
+ L S + + + + F+ G + +
Sbjct: 273 SPILLQGNE------SGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326
Query: 231 QTLAGFLNNKGCPLE---------ASFTPDSKYVISGST---DGRIHIWN 268
L G + + + + ++ DGR+ +W
Sbjct: 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 8e-23
Identities = 64/301 (21%), Positives = 105/301 (34%), Gaps = 68/301 (22%)
Query: 21 TDKITSI------DYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
+D +TSI + D +LIS S D ++I+ +G+ T
Sbjct: 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALT-- 73
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
GH V+ L LS ++ F S S+DKT+RL
Sbjct: 74 ------------------------------GHNHFVSDLALSQ-ENCFAISSSWDKTLRL 102
Query: 134 WDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
WDLR+ H S + AF P+ IKL+++ K +
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSV-AFSPDNRQILSAGAEREIKLWNILGECKFSSAEK--- 158
Query: 192 AEKECDW-TGIKFSADGK-YILISTNGSI---------IRTFDAYNGQCLQTLAGFLNNK 240
E DW + +++S K + ++ ++ N Q T ++
Sbjct: 159 -ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA---HE 213
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
S +P+ KY+ +G D ++ IW+ D S + I FNPK +A
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV 272
Query: 301 A 301
Sbjct: 273 G 273
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 6e-22
Identities = 43/303 (14%), Positives = 84/303 (27%), Gaps = 89/303 (29%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
++ + S + IS S D + ++D GT +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR---------------------- 113
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
F GH +V S+ SP D+ I S ++ ++LW++
Sbjct: 114 ----------------------FVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE 150
Query: 140 NCQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSD----------TIKLYDVRSFDKGPFS 186
S + + P +K+++ + F
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK 210
Query: 187 NFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGC 242
+ + S +GKYI + G + +D N Q
Sbjct: 211 AHE-------SNVNHLSISPNGKYI-AT--GGKDKKLLIWDILNLTYPQREFD---AGST 257
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQ 290
+ +F P ++V G+ D + I+N K V + ++
Sbjct: 258 INQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA 316
Query: 291 FNP 293
+N
Sbjct: 317 WNA 319
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-20
Identities = 37/281 (13%), Positives = 81/281 (28%), Gaps = 78/281 (27%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRF--- 71
F + ++ S+ +S D ++S + +I +++ + + V +R+
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173
Query: 72 -----THAKQAAIHASTKIDDTVRYLSLHD--NKYIRYFPGHTKKVNSLCLSPIDDTFI- 123
A AS D ++ + + + F H VN L +SP + +I
Sbjct: 174 MKSANKVQPFAPYFASVGWDGRLK---VWNTNFQIRYTFKAHESNVNHLSISP-NGKYIA 229
Query: 124 SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
+G DK + +WD+ + S +N
Sbjct: 230 TGGKDKKLLIWDILNLTYPQREFDAGST-----------------INQ------------ 260
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
I F+ +++ ++ F+
Sbjct: 261 -------------------IAFNPKLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300
Query: 242 C--PLEA--------SFTPDSKYVISGSTDGRIHIWNAEKG 272
+ ++ K + +G TDG I ++ E
Sbjct: 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 3e-17
Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 59/203 (29%)
Query: 103 FPGHTKKVNSLC------LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF 156
GH+ V S+ + ISGS DKTV +W L G
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------------- 63
Query: 157 DPEGLIFGVGVNSDTIK--LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
G+ + + V + S + + + S
Sbjct: 64 -------YFGIPHKALTGHNHFVSD---------------------LALSQENCFAI-S- 93
Query: 215 NGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271
S +R +D G + G ++ +F+PD++ ++S + I +WN
Sbjct: 94 -SSWDKTLRLWDLRTGTTYKRFVG---HQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 272 GFKVCVLDAD-HPSPVQTIQFNP 293
K + + H V ++++P
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSP 172
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 6e-13
Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 20/151 (13%)
Query: 5 DNVIR----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
D ++ ++++ F+ + + + S +G + + +D +++I+D T + F
Sbjct: 193 DGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVR-------------YLSLHDNKYIRYFPGHT 107
++ I F Q + D V+ + G
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309
Query: 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
+ SL + + +G D +R + +
Sbjct: 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 55/313 (17%), Positives = 96/313 (30%), Gaps = 96/313 (30%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T + + +S DG L + + +Y G+ + + +
Sbjct: 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 81 ----------------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI- 123
A+ D +R + + K + GH + + SL P +
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLV 181
Query: 124 SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183
SGS D+TVR+WDLR+ C + S GV +
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTL--SIED--------------GVTT-------------- 211
Query: 184 PFSNFKFAAEKECDWTGIKFS-ADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNN 239
+ S DGKYI + GS+ +R +D+ G ++ L++
Sbjct: 212 -----------------VAVSPGDGKYI-AA--GSLDRAVRVWDSETGFLVER----LDS 247
Query: 240 KGCPLE--------ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---------- 281
+ FT D + V+SGS D + +WN +
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 282 -HPSPVQTIQFNP 293
H V ++
Sbjct: 308 GHKDFVLSVATTQ 320
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-22
Identities = 59/284 (20%), Positives = 90/284 (31%), Gaps = 90/284 (31%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT----------VFSKKYGVDLIR 70
I S+DY G L+S S D + I+D G T S G I
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYI- 222
Query: 71 FTHAKQAAIHASTKIDDTVR-------YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
A+ +D VR +L + GH V S+ + D +
Sbjct: 223 ----------AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSV 271
Query: 124 -SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIK--LYDVRSF 180
SGS D++V+LW+L++ N + S G T V S
Sbjct: 272 VSGSLDRSVKLWNLQNANNKSDSKTPNS---------------GTCEVTYIGHKDFVLS- 315
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAG-- 235
+ + + +YI +S GS + +D +G L L G
Sbjct: 316 --------------------VATTQNDEYI-LS--GSKDRGVLFWDKKSGNPLLMLQGHR 352
Query: 236 -------FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
N +S P+ +GS D + IW +K
Sbjct: 353 NSVISVAVANG------SSLGPEYNVFATGSGDCKARIWKYKKI 390
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 4e-21
Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 60/216 (27%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162
H+K + L + +T + L +P
Sbjct: 11 RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPRE------------------ 52
Query: 163 FGVGVNSDTIK--LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ V V +KFS DG+Y+ N + +
Sbjct: 53 --IDVELHKSLDHTSVVCC---------------------VKFSNDGEYLATGCNKT-TQ 88
Query: 221 TFDAYNGQCLQTLAGFLNNKGCPLEA---------------SFTPDSKYVISGSTDGRIH 265
+ +G + L+ P F+PD K++ +G+ D I
Sbjct: 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
IW+ E V +L H + ++ + P + + S
Sbjct: 149 IWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSG 183
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-20
Identities = 40/278 (14%), Positives = 78/278 (28%), Gaps = 79/278 (28%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I D + + Y R + V+L +
Sbjct: 15 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREI-----DVELHKSL-------- 61
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
HT V + S D ++ +G +KT +++ +
Sbjct: 62 ------------------------DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDG 95
Query: 140 NCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199
+ + + + +RS
Sbjct: 96 SLVARLSDDSAANKDPENLNTSSSPSSDLY-------IRS-------------------- 128
Query: 200 GIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
+ FS DGK++ + G+ +IR +D N + + L G ++ + P ++
Sbjct: 129 -VCFSPDGKFL-AT--GAEDRLIRIWDIENRKIVMILQG---HEQDIYSLDYFPSGDKLV 181
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
SGS D + IW+ G L V T+ +P
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPG 217
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-22
Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 53/325 (16%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFTHAKQ 76
D + + Y G + +CS D I ++ + T+ + + I + +
Sbjct: 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEY 70
Query: 77 AAIHASTKIDDTVR---------YLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISG 125
I AS D TV+ S + + S+ +P
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130
Query: 126 SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG---LIFGVGVNSD------------ 170
D +RL+D P+ ++ + + P F +
Sbjct: 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190
Query: 171 --TIKLYDVRSFDKGPFSNFKFAAEKEC--DW-TGIKFSAD----GKYILISTNGSIIRT 221
I + AA+ I ++ + I IR
Sbjct: 191 EQAIIYQRGKD------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244
Query: 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR----IHIWNAEKGFKVCV 277
F L N + D G +D + + + +
Sbjct: 245 FKITEKLSPLASEESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301
Query: 278 LDADHPSPVQTIQFNPKFNMMASAC 302
D DH V ++ +N +++SA
Sbjct: 302 HD-DHNGEVWSVSWNLTGTILSSAG 325
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 5e-21
Identities = 32/279 (11%), Positives = 66/279 (23%), Gaps = 69/279 (24%)
Query: 17 FRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
++ + S+ ++ GL L D + +YD ++ R+ L
Sbjct: 106 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165
Query: 75 KQAAIH--------------ASTKIDDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSP- 117
+ A + ++ + Y D K PGH + S+ +P
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 118 ---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSDTIK 173
+G D +R++ + S + + + G
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG------- 278
Query: 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
+D + L
Sbjct: 279 ------------------------------RSDSNTEEK------AELQSNLQVELLSEH 302
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
G S+ + S DG++ +W A
Sbjct: 303 DDH---NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 9e-15
Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 17/158 (10%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELG 53
+ I VA + I SI ++ L+ + +D +I I+
Sbjct: 191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-- 248
Query: 54 TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD----TVRYLSLHDNKYIRYFPGHTKK 109
+ S++ + F ++ + A + D S + + H +
Sbjct: 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308
Query: 110 VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147
V S+ + S D VRLW N M V
Sbjct: 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 53/240 (22%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIM------HVSGSRPI--AA 155
GH V+ + + + S D+ ++++ L + H I
Sbjct: 9 GHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVAID 64
Query: 156 F--DPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTG-------IKFS 204
+ G I S T+KL++ K C +KF+
Sbjct: 65 WASPEYGRIIASA--SYDKTVKLWEEDP---DQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 205 AD--GKYIL-ISTNGSIIRTFDAYNGQCLQTL--AGFLNNKGCPLEA--------SFTPD 251
G + + +G +R +DA L++ + P S+ P
Sbjct: 120 PAHLGLKLACLGNDGI-LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178
Query: 252 S---KYVISGSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNP----KFNMMASAC 302
+ + + + I + G L H S +++I + P + ++A+ C
Sbjct: 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGC 237
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-22
Identities = 56/300 (18%), Positives = 103/300 (34%), Gaps = 74/300 (24%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGTNKRT-------VFSKKYGVDLIRFTHAKQAAIHA 81
D ++S D+ I I+D KR V +Y +I
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI-----------I 187
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ D TVR ++ + + H + V L + + ++ S D+++ +WD+ SP
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245
Query: 142 QGIMHV-SG-SRPI--AAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE 195
+ V G + FD + ++ S TIK+++ + E
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSA----SGDRTIKVWNTST--------------CE 287
Query: 196 C--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCP 243
+++ + + +S GS IR +D G CL+ L G
Sbjct: 288 FVRTLNGHKRGIACLQY--RDRLV-VS--GSSDNTIRLWDIECGACLRVLEGHEELVR-- 340
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD--------HPSPVQTIQFNPKF 295
D+K ++SG+ DG+I +W+ H V +QF+
Sbjct: 341 ---CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ 397
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-21
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 49/233 (21%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D+T++ + + R GHT V CL + I+GS D TVR+WD+ + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 146 --HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201
H + F+ ++ S +I ++D+ S
Sbjct: 210 IHHCEAVLHL-RFNNGMMVTC----SKDRSIAVWDMAS--------------PTDITLRR 250
Query: 202 KF----------SADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
D KYI +S S I+ ++ + ++TL G A
Sbjct: 251 VLVGHRAAVNVVDFDDKYI-VS--ASGDRTIKVWNTSTCEFVRTLNGHKRGI-----ACL 302
Query: 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ V+SGS+D I +W+ E G + VL+ H V+ I+F+ K + S
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNKR--IVSG 352
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 62/282 (21%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN---KRTVFSKKYGVDLIRFTH 73
+ + + + + + ++++CS+D I ++D T+ +R + + V+++ F
Sbjct: 209 LIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-D 265
Query: 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133
K S D T++ + +++R GH + + L D +SGS D T+RL
Sbjct: 266 DKYIV---SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRL 320
Query: 134 WDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKF 190
WD+ C ++ H R I FD + ++ G D IK++D+
Sbjct: 321 WDIECGACLRVLEGHEELVRCI-RFDNKRIVSG---AYDGKIKVWDLV------------ 364
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ CL+TL
Sbjct: 365 --------AA------------------LDPRAPAGTLCLRTLVEHSG-----RVFRLQF 393
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
D ++S S D I IW+ +
Sbjct: 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYIS 434
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 3e-14
Identities = 34/219 (15%), Positives = 65/219 (29%), Gaps = 86/219 (39%)
Query: 100 IRYFPGHTKKVNS-LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAF 156
++ ++ CL D +SG D T+++WD + C+ I+ H
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS------- 175
Query: 157 DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216
V D + ++I+ G
Sbjct: 176 --------------------VLC-----------------------LQYDER-VIIT--G 189
Query: 217 SI---IRTFDAYNGQCLQTLAG---------FLNNKGCPLEASFTPDSKYVISGSTDGRI 264
S +R +D G+ L TL F ++ +++ S D I
Sbjct: 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--------------NNGMMVTCSKDRSI 235
Query: 265 HIWNAEKGFKVCVLD--ADHPSPVQTIQFNPKFNMMASA 301
+W+ + + H + V + F+ K + SA
Sbjct: 236 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSA 272
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285
LQ + D + ++SG D I IW+ +L H
Sbjct: 119 GRHSLQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGS 175
Query: 286 VQTIQFNPKFNMMASACT 303
V +Q++ + ++ + +
Sbjct: 176 VLCLQYDER--VIITGSS 191
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-21
Identities = 50/299 (16%), Positives = 96/299 (32%), Gaps = 70/299 (23%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQI---VIYDCELGTNK 56
D +R + + + S+ Y ++ LL+ +D I ++
Sbjct: 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97
Query: 57 RT-------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN-KYIRYFPGHTK 108
T V S + ++ S D T + + + H
Sbjct: 98 YTLIGHQGNVCSLSFQDGVV-----------ISGSWDKTAK---VWKEGSLVYNLQAHNA 143
Query: 109 KVNS-LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEG-LIFG 164
V +S ++ F++ S DKT++LW + + A +G I
Sbjct: 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISC 201
Query: 165 VGVNSD--TIKLYDVRSFD-KGPF---SNFKFAAEKECDWTGIKFSADGKYILISTNG-S 217
S+ IKL D+ + D + +F + IK +G ++S
Sbjct: 202 ----SNDGLIKLVDMHTGDVLRTYEGHESFVYC---------IKLLPNGD--IVSCGEDR 246
Query: 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEA----SFTPDSKYVISGSTDGRIHIWNAEKG 272
+R + NG Q + P + + +I GS+D + I++ EK
Sbjct: 247 TVRIWSKENGSLKQVITL-------PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 7e-18
Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 30/218 (13%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR---LWDLRSPNCQ 142
D TVR S D +NS+C + + G D + L+ +
Sbjct: 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97
Query: 143 GIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ H + +F +I G S T K++ S A W
Sbjct: 98 YTLIGHQGNVCSL-SFQDGVVISG----SWDKTAKVWKEGSLVY------NLQAHNASVW 146
Query: 199 TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255
S ++ S I+ + + ++T +G + + D ++
Sbjct: 147 DAKVVSFSENKF-LT--ASADKTIKLWQN--DKVIKTFSG--IHNDVVRHLAVVDDGHFI 199
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
S S DG I + + G + + H S V I+ P
Sbjct: 200 -SCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLP 235
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 3e-13
Identities = 38/211 (18%), Positives = 57/211 (27%), Gaps = 73/211 (34%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GH + V + D S S D TVRLW ++
Sbjct: 14 LKGHDQDVRDVVAVD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG------------ 60
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--- 217
+NS + + ++ + + + G
Sbjct: 61 -----FLNS-------------------------------VCYDSEKELL-LF--GGKDT 81
Query: 218 IIRTF---DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+I L TL G N SF VISGS D +W
Sbjct: 82 MINGVPLFATSGEDPLYTLIGHQGNVCS---LSFQDG--VVISGSWDKTAKVWKEGS--L 134
Query: 275 VCVLDADHPSPV---QTIQFNPKFNMMASAC 302
V L A H + V + + F+ N +A
Sbjct: 135 VYNLQA-HNASVWDAKVVSFSE--NKFLTAS 162
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 223 DAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281
D + G Q TL G + + DSK V S S DG + +W+ + + V+
Sbjct: 3 DPFTGYQLSATLKG---HDQDVRDVVAVDDSK-VASVSRDGTVRLWSKDDQWLGTVVY-T 57
Query: 282 HPSPVQTIQFNPKFNMMASA 301
+ ++ ++ + ++
Sbjct: 58 GQGFLNSVCYDSEKELLLFG 77
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 1e-21
Identities = 50/317 (15%), Positives = 91/317 (28%), Gaps = 98/317 (30%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA 81
+ + ++ G LL SC D +I I+ E +
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS---------------------- 54
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
GH + V + SP + S S+D T +W +
Sbjct: 55 -------------------VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF 95
Query: 142 QGIMHVSG-SRPI--AAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEK 194
+ + + G + A+ P G L S ++ +++V E
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATC----SRDKSVWVWEVDE-----------EDEY 140
Query: 195 EC--------DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQ--CLQTLAGFLNNK 240
EC + + + +L S S ++ + C TL G ++
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQE-LLAS--ASYDDTVKLYREEEDDWVCCATLEG---HE 194
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNA---------------EKGFKVCVLDADHPSP 285
+F P + + S S D + IW +C L H
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 286 VQTIQFNPKFNMMASAC 302
+ I + +A+AC
Sbjct: 255 IYDIAWCQLTGALATAC 271
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 5e-21
Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 65/294 (22%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
D ++ + +++ S+ ++ G LL +CS D + +++ +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 58 TVFSKK---YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP--GHTKKVNS 112
V V + + +++ + AS DDTV+ ++ ++ GH V S
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 113 LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG--LIFGVGVNSD 170
L P S S D+TVR+W P + DP + G +S
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIWRQYLPG------NEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNG 227
TI I + + + IR F
Sbjct: 254 TI--------------------------YDIAWCQLTGAL-AT--ACGDDAIRVFQEDPN 284
Query: 228 QCLQTLAGFLNNKGCPLEA--------SFTP-DSKYVISGSTDGRIHIWNAEKG 272
Q L +A ++ P + + S S DG + W ++
Sbjct: 285 SDPQQPTFSLTAH--LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 1e-18
Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 45/223 (20%)
Query: 103 FPGHTK-KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPI--AAFD 157
P H + L +P S D+ +R+W + +S R + A+
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 158 PEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKEC--------DW-TGIKFSAD 206
P G S T ++ + EC + + ++
Sbjct: 71 PCGNYLASA--SFDATTCIWKKNQ------------DDFECVTTLEGHENEVKSVAWAPS 116
Query: 207 GKYILISTNGSI---IRTFDAYNG---QCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260
G L + S + ++ +C+ L + + P + + S S
Sbjct: 117 GNL-LAT--CSRDKSVWVWEVDEEDEYECVSVLNS---HTQDVKHVVWHPSQELLASASY 170
Query: 261 DGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNPKFNMMASA 301
D + ++ E+ VC L+ H S V ++ F+P +AS
Sbjct: 171 DDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASC 212
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 36/130 (27%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+ L ++ I I + L + DD I ++ + ++ +
Sbjct: 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-------------- 289
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTV 131
+ H++ VN + +P + + S S D V
Sbjct: 290 ---------------------PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328
Query: 132 RLWDLRSPNC 141
W + P
Sbjct: 329 AFWKYQRPEG 338
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC--VLDADHPS 284
L + + ++ P + S D RI IW E +C VL H
Sbjct: 5 LVLLGRVPA--HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR 62
Query: 285 PVQTIQFNPKFNMMASA 301
V+ + ++P N +ASA
Sbjct: 63 TVRKVAWSPCGNYLASA 79
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 1e-21
Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 39/223 (17%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM------HVSGSRPI--A 154
+ +K+ S S +GS D+ ++L ++ + I H + I
Sbjct: 10 LKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAH---KKAIRSV 64
Query: 155 AFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE--CDW-TGIKFSADGKY 209
A+ P + G S T+ ++ A E + G+ +S DG Y
Sbjct: 65 AWRPHTSLLAAG--SFDSTVSIWAKEE-SADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 210 ILISTNGSI---IRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
L + S + ++ C+ L + + P + S S D
Sbjct: 122 -LAT--CSRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIWHPSEALLASSSYDD 175
Query: 263 RIHIWNAEKGFKVCV--LDADHPSPVQTIQFNP--KFNMMASA 301
+ IW CV L+ H V + F+ + S
Sbjct: 176 TVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSG 217
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 5e-20
Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 36/280 (12%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA-KQAAI 79
I S+ + LL + S D + I+ E + F + + K A
Sbjct: 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE--ESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 80 H------ASTKIDDTVR----YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK 129
A+ D +V S + + I H++ V + P + S SYD
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 130 TVRLWDLRSPNCQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGP 184
TVR+W + + + ++G + + FD +F + SD T++++ D+
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235
Query: 185 FSNFKFAAEKEC---DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQC----LQTL 233
+ A + + +G + S ++ ++ +G+ + L
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNGL--IAS--VGADGVLAVYEEVDGEWKVFAKRAL 291
Query: 234 AGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKG 272
+ + + +G DG ++ W+ EK
Sbjct: 292 CHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEKA 329
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 45/310 (14%), Positives = 89/310 (28%), Gaps = 100/310 (32%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+KI S D+S +L + S D +I + +
Sbjct: 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL----------------------- 48
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+ H K + S+ P + + +GS+D TV +W
Sbjct: 49 -----------------IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEE- 89
Query: 140 NCQGIMHVSGSRPIAAFD-PEGLIFGVGVNSD-----------TIKLYDVRSFDKGPFSN 187
+A + E + GV ++D ++ +++
Sbjct: 90 ---SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG------ 140
Query: 188 FKFAAEKEC--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNG--QCLQTL 233
E EC + + +L S S +R + Y+ +C+ L
Sbjct: 141 ----EEYECISVLQEHSQDVKHVIWHPSEA-LLAS--SSYDDTVRIWKDYDDDWECVAVL 193
Query: 234 AGFLNNKGCPLEASFTPDSK--YVISGSTDGRIHIWNA--------EKGFKVCVLDADHP 283
G ++G + F + SGS D + +W ++ +L H
Sbjct: 194 NG---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 284 SPVQTIQFNP 293
V + +
Sbjct: 251 RQVYNVAWGF 260
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---H 282
+ +++L K F+ + +GSTD +I + + + + D H
Sbjct: 3 SINLIKSLKL---YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAH 57
Query: 283 PSPVQTIQFNPKFNMMASA 301
++++ + P +++A+
Sbjct: 58 KKAIRSVAWRPHTSLLAAG 76
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 3e-21
Identities = 49/315 (15%), Positives = 104/315 (33%), Gaps = 57/315 (18%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-------------YGV 66
++ Y + ++ + + ++++D +K + YG+
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRY-------LSLHDNKYIRYFPGHTKKVNSLCLSPID 119
+ + S D T+ F GHT V + +
Sbjct: 188 S---WNPNLNGYL-LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 120 DT-FISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPI--AAFDPEG-LIFGVGVNSDTIK 173
++ F S + D+ + +WD R+ N H + + +F+P I G T+
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 174 LYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQC 229
L+D+R+ K +F+ D +++S + IL S + +D
Sbjct: 304 LWDLRNL-KLKLHSFESHK----DEIFQVQWSPHNETILAS--SGTDRRLHVWDLSKIGE 356
Query: 230 LQTLAGFLNNKGCPL-----------EASFTPDSKYVI-SGSTDGRIHIWNAEKGFKVCV 277
Q+ + L + S+ P+ ++I S S D + +W +
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV---Y 413
Query: 278 LDADHPSPVQTIQFN 292
D + P ++ N
Sbjct: 414 NDEEPEIPASELETN 428
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 38/226 (16%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-EGLI 162
H +VN P + I + + V ++D + + +P +
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDY-TKHPSKPEPSGECQPDLRLRGHQKEG 184
Query: 163 FGVGVNSD------------TIKLYDVRSFDKGPFSNFKFAAEKECDWTG-------IKF 203
+G+ N + TI L+D+ + K + + +TG + +
Sbjct: 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI-----DAKNIFTGHTAVVEDVAW 239
Query: 204 SADGKYILIST-NGSIIRTFDAYN---GQCLQTLAGFLNNKGCPLEASFTPDSKYVI-SG 258
+ + S + + +D N + T+ C SF P S++++ +G
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPYSEFILATG 296
Query: 259 STDGRIHIWNAEKG-FKVCVLDADHPSPVQTIQFNPKF-NMMASAC 302
S D + +W+ K+ ++ H + +Q++P ++AS+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSG 341
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 4e-21
Identities = 41/310 (13%), Positives = 91/310 (29%), Gaps = 30/310 (9%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIH 80
+ ++ S DG L+ + + I+ + + + + R T AK+
Sbjct: 7 LQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQ 65
Query: 81 ASTKIDDTVRYLSLHDNKYIRY----------FPGHTKKVNSLCLSPIDDTFI-SGSYDK 129
+S ++ + S + R P + +L L+ + I DK
Sbjct: 66 SSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDK 125
Query: 130 TVRLWDLRSPNCQGI----MHVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
++ ++D+ + + RP A + + + + D+ S +
Sbjct: 126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK 185
Query: 185 FSNFKFAAEKECDW-TGIKFSADG---KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
F+ T + D ++I+ S I+ + +K
Sbjct: 186 FTQEPI--LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW--LFGHK 241
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA-DHPSPVQTIQFNPKFNMMA 299
D ++S D +I W+ + G + D P Q
Sbjct: 242 HFVSSICCGKDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQN 300
Query: 300 SACTNLAFWI 309
+ F +
Sbjct: 301 ENNDIIEFAV 310
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 1e-16
Identities = 29/270 (10%), Positives = 69/270 (25%), Gaps = 30/270 (11%)
Query: 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFTH 73
+ + +I + D +I + + D ++ G + +
Sbjct: 146 FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK 205
Query: 74 AKQAAIH-ASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
++ D+ ++ + + GH V+S+C D +S D +
Sbjct: 206 DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK-DYLLLSAGGDDKI 264
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
WD ++ + D ++ I + V
Sbjct: 265 FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK------------ 312
Query: 192 AEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQ-TLAGFLNNKGCPLEASFT 249
I S + ++ + I + Q L + + S
Sbjct: 313 ---------IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAH 363
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
D V + + N K + + +
Sbjct: 364 NDEFQVTLDNKESSGVQKNFAKFIEYNLNE 393
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 5e-21
Identities = 42/310 (13%), Positives = 85/310 (27%), Gaps = 73/310 (23%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I G + +CS D I I++ E T
Sbjct: 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------- 42
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRS 138
+K I GH V + + S SYD V +W +
Sbjct: 43 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86
Query: 139 PNCQGIM----HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK---- 189
I H + + A G + V + + + + +
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 190 ------FAAEKECDWTGIKFSADGKYILISTNGSIIR----TFDAYNGQCLQTLAGFLNN 239
+A + + + + + ++++ DA TL G +
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---H 203
Query: 240 KGCPLEASFTPD---SKYVISGSTDGRIHIWNAEKG----FKVCVLDADHPSPVQTIQFN 292
+ +++P Y+ S S D IW + K + + P + ++
Sbjct: 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 293 PKFNMMASAC 302
N++A +
Sbjct: 264 LSGNVLALSG 273
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 25/219 (11%), Positives = 68/219 (31%), Gaps = 41/219 (18%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPN--CQGIM--HVSGSRPIA-AFDP 158
H + ++ + + + S DKT++++++ + H + A
Sbjct: 7 AHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 159 EGLIFGVGVNSD--TIKLYDV---RSFDKGPFSNFKFAAEKECDW-TGIKFSAD--GKYI 210
G I S + ++ R + ++++ G +
Sbjct: 66 FGTILASC--SYDGKVMIWKEENGRWSQIAVHAVHS-------ASVNSVQWAPHEYGPML 116
Query: 211 LISTNGSIIRTFDAYNGQCLQ--TLAGFLN----------NKGCPLEASFTPDSKYVISG 258
L++++ + + + E + T +S+ ++G
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 259 STDGRIHIW----NAEKGFKVCVLDADHPSPVQTIQFNP 293
D + IW +A+ L+ H V+ + ++P
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSP 214
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-08
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 10/121 (8%)
Query: 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV-DLIR---FTHAKQAAIH 80
+ + + ++ D+ + I+ + S G D +R ++ +
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 81 -ASTKIDDTVRYLSLHDN-----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
AS D T + + K + + S + D V LW
Sbjct: 222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Query: 135 D 135
Sbjct: 282 K 282
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-20
Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 33/243 (13%)
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK----VNSLCLSPIDDTFISGSYDKTVR 132
+ + ++ + K S +G + +
Sbjct: 34 VTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93
Query: 133 LWDLRSPNCQG---------IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183
+W+L +P I + G + G T+K++D R D
Sbjct: 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGL-GIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152
Query: 184 PFSNFKFAAEKECD-W---TGIKFSADGKYILI-STNGSIIRTFDAYNGQCLQTLAGFLN 238
+ E + D W G ++ + + + NG I+ FD N N
Sbjct: 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD-IKLFDLRNMALRWE----TN 207
Query: 239 NKGCPLEASFTPDS---KYVISGSTDGRIHIWNAE-----KGFKVCVLDADHPSPVQTIQ 290
K F +++ S +G+ H+++ KGF A H S V ++
Sbjct: 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA-HKSTVWQVR 266
Query: 291 FNP 293
P
Sbjct: 267 HLP 269
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 5e-19
Identities = 35/294 (11%), Positives = 78/294 (26%), Gaps = 55/294 (18%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF----SKKYGVDLIRFTHAKQAAI 79
T S L + + I++ E +D I I
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG-----GLGI 125
Query: 80 H------ASTKIDDTVR----YLSLHDNKYIRYFPGHTKK-----VNSLCLSPIDDTFIS 124
+ D TV+ + G K+ + + +
Sbjct: 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG---VGVNSDTIKLYDVRSFD 181
G + ++L+DLR+ + ++ FD + + ++D+R+
Sbjct: 186 GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245
Query: 182 KGPFSNFKFAAEKE-CDW-TGIKFSADGKYILIS--------------------TNGSII 219
P F +EK ++ + + ++ + I
Sbjct: 246 --PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKG 272
A + LQ + + ++PD + + S D + + K
Sbjct: 304 EMGVAGSVSLLQNVTL---STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-15
Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 58/213 (27%)
Query: 105 GHTKKVNSLCLSPIDDTFIS----GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG 160
G V P F++ ++L++++ + + + + ++PI
Sbjct: 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKC----- 70
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
T S +Y+ G +
Sbjct: 71 -------------------------------------GTFGATSLQQRYLATGDFGGNLH 93
Query: 221 TFDAYNGQC-LQTLAG---FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
++ + + ++ G +N + +++GS DG + +W+ +
Sbjct: 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153
Query: 277 VL--------DADHPSPVQTIQFNPKFNMMASA 301
D + +N + ++ +
Sbjct: 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 29/127 (22%)
Query: 17 FRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ + + + + L ++ + ++ E
Sbjct: 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ-------------------- 294
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI--SGSYDKTVRL 133
S K + + ++ T+ ++SL SP D + S+D+TVR+
Sbjct: 295 -----RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRV 348
Query: 134 WDLRSPN 140
+ N
Sbjct: 349 LIVTKLN 355
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-20
Identities = 41/310 (13%), Positives = 85/310 (27%), Gaps = 73/310 (23%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I G L +CS D I I++ E T
Sbjct: 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------- 44
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRS 138
+K I GH V + + S SYD V +W +
Sbjct: 45 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88
Query: 139 PNCQGIM----HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK---- 189
I H + + A G + V + + + + +
Sbjct: 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148
Query: 190 ------FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN----GQCLQTLAGFLNN 239
+A + + + + + ++++ + + TL G +
Sbjct: 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---H 205
Query: 240 KGCPLEASFTPD---SKYVISGSTDGRIHIWNAEKG----FKVCVLDADHPSPVQTIQFN 292
+ +++P Y+ S S D IW + K + + P + ++
Sbjct: 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 265
Query: 293 PKFNMMASAC 302
N++A +
Sbjct: 266 LSGNVLALSG 275
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 30/315 (9%), Positives = 75/315 (23%), Gaps = 80/315 (25%)
Query: 17 FRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTV-------------FS 61
++ + S+ ++ G LL+ S D ++ + + + + ++
Sbjct: 97 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVR----YLSLHDNKYIRYFPGHTKKVNSLCLSP 117
+ K++ + D+ V+ GH+ V + SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 118 ---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
+ S S D+T +W + + E F +
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--------EK--FPDVLWR----- 261
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA-YNGQCLQTL 233
+S G + +S + + + G+
Sbjct: 262 --------------------------ASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA- 294
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
SG ++ ++ +L + +
Sbjct: 295 --------------GEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFS-ECNDEIDNAKLI 339
Query: 294 KFNMMASACTNLAFW 308
+A A +
Sbjct: 340 MKERRFTASYTFAKF 354
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 39/218 (17%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIA-AFDP 158
H + ++ L + + S DKT++++++ + I H + A
Sbjct: 9 AHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 159 EGLIFGVGVNSD--TIKLYDV---RSFDKGPFSNFKFAAEKECDW-TGIKFSAD--GKYI 210
G I S + ++ R + ++++ G +
Sbjct: 68 FGTILASC--SYDGKVLIWKEENGRWSQIAVHAVHS-------ASVNSVQWAPHEYGPLL 118
Query: 211 LISTNGSIIRTFDAYNGQCLQ--TLAGFLN----------NKGCPLEASFTPDSKYVISG 258
L++++ + + + E + T +S+ ++G
Sbjct: 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178
Query: 259 STDGRIHIWNAEKGFKVCVLDA---DHPSPVQTIQFNP 293
D + IW + VL++ H V+ + ++P
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 36/180 (20%)
Query: 5 DNVIR---------SYKVAKLFRENTDKITSIDYSADGL---LLISCSEDDQIVIYDCEL 52
DN+++ +Y + ++D + + +S L L S S+D +I+ +
Sbjct: 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
Query: 53 GTNKRTVFSKKYGVDLIRFTHA-------KQAAIHASTKIDDTVRYLSLHDNKYIRYFPG 105
KK + +F + A + D+ V L G
Sbjct: 241 EQGP----WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT---LWKENL----EG 289
Query: 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIF 163
+ + SG T + +D N ++ + A + F
Sbjct: 290 KWEPAGEVHQGGGG----SGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRF 345
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV--LDADHPS 284
G + + +A K + + S+D I I+ E + L H
Sbjct: 1 GSMVVIANA---HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEG 56
Query: 285 PVQTIQFNP 293
PV + +
Sbjct: 57 PVWRVDWAH 65
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 6e-20
Identities = 28/296 (9%), Positives = 75/296 (25%), Gaps = 68/296 (22%)
Query: 9 RSYKVAKLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+ + +A+ + + K + + LL + ++ IY
Sbjct: 4 KIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYG------------------ 45
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY 127
V + + + + + +
Sbjct: 46 ------------------QQQVEVVIKLE---------DRSAIKEMRFVK-GIYLVVINA 77
Query: 128 DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
TV + L S + V G D +G+ + ++ +YD+ F
Sbjct: 78 KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137
Query: 188 FKFAAEKEC------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL-------- 233
I+++ ++ + + T+ + Q+
Sbjct: 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFA 197
Query: 234 -------AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
+++ + P+S ++I+ D + W+A G +
Sbjct: 198 PGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 5e-13
Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 21/225 (9%)
Query: 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-- 154
+ +Y G + K + + + V ++ + ++ + I
Sbjct: 9 AETNKY--GMSSKPIAAAFDFTQNLLAIATVTGEVHIYG--QQQVEVVIKLEDRSAIKEM 64
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
F + V DT+ + + S + + + I A ++LI
Sbjct: 65 RFVKGIYLV-VINAKDTVYVLSLYS--QKVLTTVFVPGKITS----IDTDASLDWMLIGL 117
Query: 215 NGSIIRTFDAYNGQC-------LQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHI 266
+ +D Q LQ + F + P+ + + P + S +
Sbjct: 118 QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLT 177
Query: 267 WNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPT 311
++ + + P F+ K N + + + P
Sbjct: 178 YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 6e-10
Identities = 35/322 (10%), Positives = 83/322 (25%), Gaps = 50/322 (15%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
E+ I + + L + + D + + TVF + I +
Sbjct: 56 EDRSAIKEMRFVKGIYL-VVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASLDWM 113
Query: 79 IHASTKIDDTVR----------YLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSY 127
+ + ++ L + + +FP + S+ +P D + SY
Sbjct: 114 LIGLQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171
Query: 128 DKTVRLWDLR---------------SPNCQGIMHVSGSRPI----AAFDPEGLIFGVGVN 168
+ + L +P + R + + P L
Sbjct: 172 EYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231
Query: 169 SDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFSADGKYI-----LISTNGSIIRTF 222
+++ +D S + F+ S + I + N
Sbjct: 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
++ + +Y I+ + + N ++ +
Sbjct: 292 ISHKSI-------SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM---KIFPLPT 341
Query: 283 PSPVQTIQFNPKFNMMASACTN 304
P+ I P+ + + C N
Sbjct: 342 NVPIVNILPIPRQSPYFAGCHN 363
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 7e-08
Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 36/295 (12%)
Query: 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91
+ L++ + +I G T + + +L + A++ +
Sbjct: 363 NPGLILLILGNGEIETMLYPSGI--FTDKASLFPQNL-SWLRPLATTSMAAS--VPNKLW 417
Query: 92 LSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--- 146
L + + G + + FI+G + +VR++D + Q
Sbjct: 418 LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477
Query: 147 -----VSGSRPIA----AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
++ ++ +A +F E L V + + + L+ N + + E +
Sbjct: 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN 537
Query: 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
+ + + + Q NKG A + +V
Sbjct: 538 FRRFSLNNTNGVL-----VDVRDRAPTGVRQGFMPSTAVHANKG-KTSAINNSNIGFVGI 591
Query: 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312
G + + D P+ + ++ T + F I Y
Sbjct: 592 AYAAGSLMLI-----------DRRGPAIIYMENIREISGAQSACVTCIEFVIMEY 635
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-05
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 5/140 (3%)
Query: 3 LTDNVIRSYKVAKLF-RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
+ DN +++ + + I ++A+ L L E +V++ E+
Sbjct: 469 IQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRY-LSLHDN-KYIRYFPGHTKKVNSLCLSPID 119
+ G + F + +D R + + K +++ S I
Sbjct: 529 PESGDLEMNFRRFSLNNTNGVL-VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI- 586
Query: 120 DTFISGSYDKTVRLWDLRSP 139
++ L D R P
Sbjct: 587 GFVGIAYAAGSLMLIDRRGP 606
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 9e-19
Identities = 45/310 (14%), Positives = 88/310 (28%), Gaps = 73/310 (23%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I G L +CS D I I++ E T
Sbjct: 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------- 42
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS-PIDDTFI-SGSYDKTVRLWDLRS 138
+K I GH V + + P T + S SYD V +W +
Sbjct: 43 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86
Query: 139 PNCQGIM----HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK---- 189
I H + + A G + V + + + + +
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 190 ------FAAEKECDWTGIKFSADGKYILISTNGSIIR----TFDAYNGQCLQTLAGFLNN 239
+A + + + + + ++++ DA TL G +
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---H 203
Query: 240 KGCPLEASFTPD---SKYVISGSTDGRIHIWNAEKG----FKVCVLDADHPSPVQTIQFN 292
+ +++P Y+ S S D IW + K + + P + ++
Sbjct: 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 293 PKFNMMASAC 302
N++A +
Sbjct: 264 LSGNVLALSG 273
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 9e-12
Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 33/215 (15%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSG-SRPI----AAFDP 158
H + ++ L + + S DKT++++++ + I ++G P+ A
Sbjct: 7 AHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 159 EGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSAD--GKYILIS 213
G I S + ++ + + ++++ G +L++
Sbjct: 66 FGTILASC--SYDGKVLIWKEENGRWSQIAVHAV----HSASVNSVQWAPHEYGPLLLVA 119
Query: 214 TNGSIIRTFDAYNGQCLQ--TLAGFLN----------NKGCPLEASFTPDSKYVISGSTD 261
++ + + + E + T +S+ ++G D
Sbjct: 120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179
Query: 262 GRIHIWNAEKGFKVCVLDA---DHPSPVQTIQFNP 293
+ IW + VL++ H V+ + ++P
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-11
Identities = 47/311 (15%), Positives = 89/311 (28%), Gaps = 79/311 (25%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGT-NKRTVFSK-KYGVDLIRFTHAKQAAIHASTKID 86
+ G +L SCS D +++I+ E G ++ V + V+ +++ + + D
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 87 DTVRYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDD-------------TFISGSYDKTV 131
V + +N H VNS +P F++G D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 132 RLWDLRSPNCQGIM------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185
++W S ++ H SD VR
Sbjct: 183 KIWKYNSDAQTYVLESTLEGH----------------------SDW-----VRD------ 209
Query: 186 SNFKFAAEKECDWTGIKFSAD---GKYILI-STNGSI-IRTFDAYNGQCLQTLAGFLNNK 240
+ +S Y+ S + + I T D G +TL
Sbjct: 210 ---------------VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDAD--HPSPVQTIQFNPKFNM 297
AS++ + D ++ +W +G + + +F+
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDG 314
Query: 298 MASACTNLAFW 308
+L F
Sbjct: 315 PCQNEIDLLFS 325
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 6e-11
Identities = 33/330 (10%), Positives = 81/330 (24%), Gaps = 77/330 (23%)
Query: 17 FRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTV-------------FS 61
++ + S+ ++ G LL+ S D ++ + + + + ++
Sbjct: 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVR----YLSLHDNKYIRYFPGHTKKVNSLCLSP 117
+ K++ + D+ V+ GH+ V + SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 118 ---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
+ S S D+T +W + + E F +
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--------EK--FPDVLWR----- 259
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
+S G + +S + + +
Sbjct: 260 --------------------------ASWSLSGNVLALSGGDNKVTLWKE---------- 283
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
N E + SG ++ ++ +L ++ + + K
Sbjct: 284 ----NLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMK 339
Query: 295 FNMMASACTNLAFWIPTYLSNHQEPDTIDN 324
++ T F + L
Sbjct: 340 ERRFTASYTFAKFSTGSMLLTKDIVGKSGV 369
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 6e-08
Identities = 36/280 (12%), Positives = 64/280 (22%), Gaps = 45/280 (16%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV-DLIR---FTHAKQAAIH- 80
+ + + ++ D+ + I+ + S G D +R ++ +
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222
Query: 81 ASTKIDDTVRYLSLHDN-----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
AS D T + + K + + S + D V LW
Sbjct: 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
Query: 136 LR---------SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ G G FD + S+ D K
Sbjct: 283 ENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSEC---NDEIDNAKLIMK 339
Query: 187 NFKFAAEKECDWTGIKFSADGKYILISTNG------------------SIIRTFDAYNGQ 228
+F A +T KFS + G D +
Sbjct: 340 ERRFTA----SYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEK 395
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
N E+S T ++W
Sbjct: 396 VTIEARK-SNPYPQISESSLLFKDALDYMEKTSSDYNLWK 434
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 2e-18
Identities = 27/312 (8%), Positives = 76/312 (24%), Gaps = 60/312 (19%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV--FS 61
++++ ++ + K + D + + ED + + T+ +
Sbjct: 19 NLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPN 78
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF-PGHTKKVNSLCLSP--I 118
+ G + + + L NK +R ++ +
Sbjct: 79 PRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN 138
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLYD 176
+ FI T+ + + + L+ + + +Y+
Sbjct: 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
+ S D+ S F E + +KF+ +G ++++
Sbjct: 199 LSSPDQ-ASSRFPVDEEAK--IKEVKFADNGYWMVVEC---------------------- 233
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA----DHPSPVQTIQFN 292
D + ++ K + + T +
Sbjct: 234 ------------------------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269
Query: 293 PKFNMMASACTN 304
M +
Sbjct: 270 DSGKNMIAYSNE 281
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 3e-17
Identities = 33/271 (12%), Positives = 67/271 (24%), Gaps = 19/271 (7%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-VDLIRF 71
+ + +I L+ +QI I D + R + + +
Sbjct: 74 ITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYG 133
Query: 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK-VNSLCLSPIDDTFISGSYDKT 130
+ T+ + S D+ + +S L S D
Sbjct: 134 HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193
Query: 131 VRLWDLRSPNCQGIMHVSG-SRPIA--AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
+ +++L SP+ I F G V T+ +D+R
Sbjct: 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE-CDQTVVCFDLRKDVGTLAYP 252
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGS----------IIRTFDAYNGQCLQTLAGFL 237
E + GK ++ +N S + + L +
Sbjct: 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTA 312
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ + D T+ +I
Sbjct: 313 DFTDMDV---VCGDGGIAAILKTNDSFNIVA 340
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-17
Identities = 52/320 (16%), Positives = 92/320 (28%), Gaps = 73/320 (22%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK---------RTVFSKK 63
+ + + D I G L +CS D + I+D G V+
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQ-- 62
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK-----YIRYFPGHTKKVNSLCLSPI 118
+ + H I AS D V + + GH VNS+C +P
Sbjct: 63 -----VAWAHPMYGNILASCSYDRKVI---IWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 119 DD--TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA----AFDPEGLIFGVGVNSDTI 172
D GS D + L + ++ + I ++ P + + +
Sbjct: 115 DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG---QC 229
K ++ F G CD I+ + +
Sbjct: 175 KPNYIKRFASG--G---------CDNL-------------------IKLWKEEEDGQWKE 204
Query: 230 LQTLAGFLNNKGCPLEASFTPDS----KYVISGSTDGRIHIWN---AEKGFKVCVLDADH 282
Q L + + ++ P + S S DGR+ IW A L
Sbjct: 205 EQKLEA---HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261
Query: 283 PSPVQTIQFNPKFNMMASAC 302
V + ++ N++A +
Sbjct: 262 NDVVWHVSWSITANILAVSG 281
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 35/284 (12%), Positives = 74/284 (26%), Gaps = 78/284 (27%)
Query: 21 TDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQ 76
+ + ++ G +L SCS D +++I+ E GT +++ V+ + +
Sbjct: 57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY 116
Query: 77 AAIHASTKIDDTVRYLSLHDNKY---IRYFPGHTKKVNSLCLSP---------------- 117
I A D + L+ + HT N++ +P
Sbjct: 117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176
Query: 118 -IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176
F SG D ++LW + SD
Sbjct: 177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQK--------------LEAH---SDW----- 214
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSAD----GKYILISTNGSIIRTFDAYNG----Q 228
VR + ++ I + + + +
Sbjct: 215 VRD---------------------VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW 253
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
+ L F S++ + + D ++ +W
Sbjct: 254 SPKLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 52/143 (36%)
Query: 5 DNVIR--------SYKVAKLFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCEL 52
DN+I+ +K + ++D + + ++ + SCS+D ++ I+ C+
Sbjct: 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247
Query: 53 GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112
++ + V
Sbjct: 248 ASSNTWS----------------------------------------PKLLHKFNDVVWH 267
Query: 113 LCLSPIDDTFISGSYDKTVRLWD 135
+ S + D V LW
Sbjct: 268 VSWSITANILAVSGGDNKVTLWK 290
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 1e-16
Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 12/192 (6%)
Query: 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146
T ++ K + + T + G + V +DL P
Sbjct: 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYD 304
Query: 147 VSGSRPI-----AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201
I A D E + +++ + + +F + +
Sbjct: 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPV 361
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
+ + S S +R + + L + + V++GS D
Sbjct: 362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR---ETTITAIGVSRLHPMVLAGSAD 418
Query: 262 GRIHIWNAEKGF 273
G + I NA +
Sbjct: 419 GSLIITNAARRL 430
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-13
Identities = 17/216 (7%), Positives = 47/216 (21%), Gaps = 20/216 (9%)
Query: 106 HTKKVNSLCLSPIDDT------FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE 159
+V L S + T+ ++ + +P
Sbjct: 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265
Query: 160 GLIFG-----------VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208
+ G + + +D+ + P + + +
Sbjct: 266 DSLITTFDFLSPTTVVCGFKNGFVAEFDLTD-PEVPSFYDQVHDSYILSVSTAYSDFEDT 324
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ F+ + +T + + P I +
Sbjct: 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL-VPVVYCPQIYSYIYSDGASSLRAVP 383
Query: 269 AEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304
+ F V L + + I + M+ + +
Sbjct: 384 SRAAFAVHPL-VSRETTITAIGVSRLHPMVLAGSAD 418
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-12
Identities = 14/119 (11%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 21 TDKITSIDY---SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA 77
I S+ + ++ + + D I++ + +T S+ G +L+ + Q
Sbjct: 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI 367
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ + ++R + + + ++ +S + ++GS D ++ + +
Sbjct: 368 YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 1e-08
Identities = 10/148 (6%), Positives = 40/148 (27%), Gaps = 5/148 (3%)
Query: 35 LLISCSEDDQIVIYDCELGTNKRTVFS--KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92
++ ++ + +D Y + + + + ++ +D
Sbjct: 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338
Query: 93 SLHDNKYIRYFPGHTKK--VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS 150
+ D + + + + P ++I ++R R+ + +
Sbjct: 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398
Query: 151 RPIA-AFDPEGLIFGVGVNSDTIKLYDV 177
A + G ++ + +
Sbjct: 399 TITAIGVSRLHPMVLAGSADGSLIITNA 426
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 38/324 (11%), Positives = 79/324 (24%), Gaps = 73/324 (22%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
I S+ +SCS D + ++D +L N+
Sbjct: 16 DADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKD-------------------K 54
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ + + + I V + S + D+T ++ +
Sbjct: 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 114
Query: 141 CQGIMHVSGSRPIA-AFDP---EGLIFGVGVNSDTIKLYDVRSF-DKGPFSNFKFAAEKE 195
M + T ++ F D+ ++ E
Sbjct: 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174
Query: 196 CDWTG------------IKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNK 240
T + S G + + G ++ + + L
Sbjct: 175 LQGTVESPMTPSQFATSVDISERGL--IAT--GFNNGTVQISELSTLRPLYNFES----- 225
Query: 241 GCPLEA--------SFTPDSKYVISGS---TDGRIHIWNAEKGFKVCVLDAD-------- 281
+ F+P + + G I ++ E G ++ L
Sbjct: 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285
Query: 282 ----HPSPVQTIQFNPKFNMMASA 301
H S V ++ FN + SA
Sbjct: 286 GEFAHSSWVMSLSFNDSGETLCSA 309
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 1e-15
Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 57/185 (30%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR--------------SPNCQGIMHVSGS 150
H + S+ +S S D +++WD + + G+ HV
Sbjct: 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 71
Query: 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210
+ I E + V + + FS D +
Sbjct: 72 QAIERDAFELCL----VATTS-------------------------------FSGDLLFY 96
Query: 211 LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD---SKYVISGSTDGRIHIW 267
I+ + + + L+ + D S +++ G +IW
Sbjct: 97 RITREDETKKVIFEKLDLLDSDMKK---HSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153
Query: 268 NAEKG 272
Sbjct: 154 KFHPF 158
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 3e-15
Identities = 25/279 (8%), Positives = 65/279 (23%), Gaps = 87/279 (31%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
+ + + TS+D S GL+ + + + I +
Sbjct: 170 SPTLELQGTVESPMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLR---------- 218
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI- 123
L++ + ++ + S+ SP + +
Sbjct: 219 ----------------------------PLYNFESQHSMINNSNSIRSVKFSP-QGSLLA 249
Query: 124 SGSYDKT---VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
+ + L++ G + V A+ +S +
Sbjct: 250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA-------HSSWV-------- 294
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFL 237
+ F+ G+ + S +R +D + + TL
Sbjct: 295 ------------------MSLSFNDSGETLC-S--AGWDGKLRFWDVKTKERITTLNMHC 333
Query: 238 NN-KGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKG 272
++ + + + W + G
Sbjct: 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-15
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 39/165 (23%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSED---DQIVIYDCELGTNKRTVF 60
T + +++ N++ I S+ +S G LL + I +Y+ E G ++
Sbjct: 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 275
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
H ++ H+ V SL + +
Sbjct: 276 VPT-------------------------------HSSQASLGEFAHSSWVMSLSFNDSGE 304
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMH-----VSGSRPIAAFDPEG 160
T S +D +R WD+++ ++ + I A D G
Sbjct: 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA--KQAA 78
+ + S+ ++ G L S D ++ +D + T+ +++ A +
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 350
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
A + D K S + ++++ D+++R +
Sbjct: 351 SLAEPGVFDVKF---------------LKKGWRSGMGADLNESLCCVCLDRSIRWFR 392
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 4e-12
Identities = 36/325 (11%), Positives = 101/325 (31%), Gaps = 38/325 (11%)
Query: 4 TDNVIRSYKV---AKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYD-------CEL 52
T Y V A + + ++ + + + + I+D +
Sbjct: 38 TLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI 97
Query: 53 GTNKRTVFSKKYGVDLIRFTHAKQAAIHA----STKIDDTVRYLSLHDNKYIRYFPGHTK 108
V + I ++ ++ +I D +R+ + + +
Sbjct: 98 -KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEF 156
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-LIFGVGV 167
+ + ++ + + + + D+ V+ + H + + + + + ++
Sbjct: 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR-LNRKSDMVATCSQ 215
Query: 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI---KFSADGKYILISTNGSIIRTFDA 224
+ I+++ +F + D + K+S DG + + ++ + F+
Sbjct: 216 DGTIIRVFKTEDGVL----VREF--RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269
Query: 225 YNGQC--LQTLAGFLNNKGCPLEASF---------TPDSKYVISGSTDGRIHIWNAEKGF 273
+N Q L G++N K E S + S + +W +
Sbjct: 270 FNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329
Query: 274 KVCVLDADHPSPVQTIQFNPKFNMM 298
+ + D IQ + + +M
Sbjct: 330 ETFKVVFDDEMERWLIQMDQREQLM 354
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 57/249 (22%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL---------------------------- 136
+ V + D + + S K+ ++++
Sbjct: 17 HVSNPVTDYEFNQ-DQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAF 75
Query: 137 --RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD--------TIKLYDVRSFDKG--- 183
I + ++ + + + ++ + I ++ + K
Sbjct: 76 VTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITD 135
Query: 184 --------PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235
FSN E + I + S +
Sbjct: 136 DIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS--GSATTQDQGVQQKAILGKGVLIKA 193
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGR-IHIWNAEKGFKVCVL-DADHPSPVQTIQFNP 293
N S V + S DG I ++ E G V + V ++++
Sbjct: 194 HTNPIKM---VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250
Query: 294 KFNMMASAC 302
+ +A
Sbjct: 251 DGSKLAVVS 259
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 22/254 (8%)
Query: 27 IDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85
S DG + ++ + + + I D TV + + + + +
Sbjct: 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY-VTNMA 94
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGI 144
T+ + N K L LSP +++ + DKTV + + +
Sbjct: 95 SSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153
Query: 145 MHVSGSRPIA-AFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK 202
+ V G P A P+G ++ +S +I + D + + A +GI
Sbjct: 154 VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP------SGIA 206
Query: 203 FSADGKYILISTNGSIIRT---FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV-ISG 258
+ +G ++ T D + + + P + TPD K V ++
Sbjct: 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD----PAGIAVTPDGKKVYVAL 262
Query: 259 STDGRIHIWNAEKG 272
S + + +
Sbjct: 263 SFXNTVSVIDTATN 276
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 33/200 (16%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGI 144
D + + + NK P +SP +++ ++ V + D + N
Sbjct: 11 SDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69
Query: 145 MHVSGSRPIA-AFDPEG-LIFGVGVNSDTIKLYDVRSF--------DKGPFSNFKFAAEK 194
+ GS P A P+G ++ + S T+ + D S K P
Sbjct: 70 VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP---------- 118
Query: 195 ECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
G+ S DGK + ++ NG + + + T++ + P + TPD
Sbjct: 119 ----LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS----PKGIAVTPDGT 170
Query: 254 YV-ISGSTDGRIHIWNAEKG 272
V ++ I + +
Sbjct: 171 KVYVANFDSMSISVIDTVTN 190
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 9e-08
Identities = 36/251 (14%), Positives = 73/251 (29%), Gaps = 39/251 (15%)
Query: 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV--RLWDLRSPNCQGIMHVSGSRPIA 154
NKY F G + + G + ++ L P I H+
Sbjct: 46 NKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL------- 98
Query: 155 AFDPEGLIFGVGVNS----DTIKLYDVRSF------DKGPFSNFKFAAEKECDWTGIKFS 204
A + L + S I +DVR+F K PF+ K + +K++
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN 158
Query: 205 ADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR 263
++ + I + ++P K + G +G
Sbjct: 159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS---VCWSPKGKQLAVGKQNGT 215
Query: 264 IHIWNAEKGFKVCV-----LDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQE 318
+ + K + ++DHP V + + + + Y +
Sbjct: 216 VVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYV-----------FAIVYAAADGT 264
Query: 319 PDTIDNLKIYL 329
+T ++ + L
Sbjct: 265 LETSPDVVMAL 275
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 2e-05
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 14/136 (10%)
Query: 23 KITSIDYSADGLLLISC----SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ-- 76
I + S D L L +C I +D +N+ + + +
Sbjct: 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI 153
Query: 77 --------AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
++ A D ++ L + + + T V S+C SP G +
Sbjct: 154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN 213
Query: 129 KTVRLWDLRSPNCQGI 144
TV + + I
Sbjct: 214 GTVVQYLPTLQEKKVI 229
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 39/290 (13%), Positives = 74/290 (25%), Gaps = 45/290 (15%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFT-HAKQAAIHAS 82
S+ + + L I ED+ + + D G R K + + + + S
Sbjct: 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS 186
Query: 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNC 141
+ V L Y K L PI D + S + + + D ++
Sbjct: 187 QMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246
Query: 142 QGIMHVSGSRPIA-AFDPEG--------LIFGVGVNSDTIKLYDVRSF--------DKGP 184
P +G + +Y +
Sbjct: 247 IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCP 243
I I +S I +D + +++ F P
Sbjct: 306 R--------------HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK----P 347
Query: 244 LEASFTPDSK--YVISGSTDG--RIHIWNAEKGFKVCVLDADHPSPVQTI 289
+ +PD K YV + ++ KV V+D + +
Sbjct: 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Length = 356 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-05
Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 21/243 (8%)
Query: 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN---KYI 100
+ + + +++ V K + + ++ + T D V ++ ++ K
Sbjct: 115 RALFCSSD-DESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN 173
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGSRP----IAA 155
++ + + + + G+ + +W+L++ MH+ S A
Sbjct: 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233
Query: 156 FDPEGLIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTG-----IKFSA 205
+ GL+F V + + +RS P + C G ++
Sbjct: 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293
Query: 206 DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265
I +D GQC L ++++ ++ ++++G DG I
Sbjct: 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSF-VKWSGTDSHLLAGQKDGNIF 351
Query: 266 IWN 268
+++
Sbjct: 352 VYH 354
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Length = 337 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 4e-04
Identities = 31/308 (10%), Positives = 66/308 (21%), Gaps = 55/308 (17%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSK 62
V + +A + G + + ++ + +V D L T + T+
Sbjct: 20 KMAVDKVITIADAGPTPM----VPMVAPGGRIAYATVNKSESLVKID--LVTGE-TLGRI 72
Query: 63 KYGVDLIRFTHAKQAAIHASTK------------------IDDTVRYLSLHDNKYIRYFP 104
R AA+ K V + F
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF- 163
+++ L + D + + D + + P+ L
Sbjct: 133 AP-RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189
Query: 164 --GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD-----------------WTGIKFS 204
Y R D + +
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
+ N + +FD ++ + + + D V G G +
Sbjct: 250 PAKTRAFGAYNV--LESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDL 303
Query: 265 HIWNAEKG 272
++AE
Sbjct: 304 AAYDAETL 311
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
D + ++ G SD K R ++S D + +L
Sbjct: 79 LVDSKVVLPGTETLSDEEKARRERQRIAAMTG-----------IVDYQWSPDAQRLLFPL 127
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
G + +D + + +G +A +P +V + + + G
Sbjct: 128 GGELYL-YDLKQEG-KAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG 182
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.98 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.98 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.73 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.65 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.63 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.61 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.6 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.59 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.58 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.58 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.57 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.57 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.53 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.53 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.47 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.43 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.41 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.41 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.4 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.4 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.38 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.37 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.35 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.34 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.32 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.26 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.26 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.12 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.08 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.04 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.02 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.01 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.01 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.98 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.96 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.96 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.95 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.9 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.89 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.87 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.87 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.84 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.81 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.79 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.76 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.74 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.73 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.72 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.69 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.69 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.64 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.59 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.57 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.57 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.54 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.53 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.45 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.44 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.42 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.4 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.37 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.33 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.31 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.31 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.26 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.24 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.19 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.11 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.08 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.94 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.92 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.92 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.9 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.9 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.9 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.85 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.82 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.72 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.66 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.6 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.59 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.53 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.51 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.48 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.44 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.43 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.42 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.32 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.09 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.02 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.96 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.88 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.87 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.81 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.67 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.62 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.58 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.33 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.27 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.12 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.05 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.03 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.95 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.9 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.87 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.82 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.72 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.63 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.56 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.26 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.9 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.85 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.84 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.78 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.75 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.96 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.91 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.76 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.68 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.46 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.21 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.39 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 89.88 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.76 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 89.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 88.51 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 88.41 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 88.12 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 87.16 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 86.44 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 82.61 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 80.84 |
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=329.49 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=247.0
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++++.++|++|.+.|++++|+|+|++|++|+.||+|+|||++++.....+..+...+..++|.+++. .+++++.|++|
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i 79 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--WIIVGSDDFRI 79 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT--EEEEEETTSEE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC--EEEEECCCCEE
Confidence 3678899999999999999999999999999999999999999999888888889999999998765 45667789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EE-EecCCcceEEECC-CCCEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IM-HVSGSRPIAAFDP-EGLIFGVG 166 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~ 166 (335)
++||+.+++.+..+++|.+.|++++|+|++++|+||+.|++|++||++++.... .+ .+...+..++|+| ++.++++|
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999998764432 22 2344566788998 67899999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc--CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+.|++|++||++... +... ....+...+..++|+| ++.+|++++.|+.|++||+++++++..+.+| ...+.
T Consensus 160 s~D~~v~iwd~~~~~--~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h---~~~v~ 232 (304)
T 2ynn_A 160 CLDRTVKVWSLGQST--PNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVS 232 (304)
T ss_dssp ETTSEEEEEETTCSS--CSEE--EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEE
T ss_pred eCCCeEEEEECCCCC--ccce--eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC---CCCEE
Confidence 999999999997532 2222 2223334567788876 7789999999999999999999998888764 45678
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc--EEEeeece-eEEecc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN--MMASACTN-LAFWIP 310 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~~~s~~~~-~~~w~~ 310 (335)
.++|+|++++|++|+.||+|++||..++.....+. .|...+++++|+|++. ++|+|+.+ +.+|..
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 89999999999999999999999999988887775 5888999999999875 58888644 566653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=345.66 Aligned_cols=286 Identities=21% Similarity=0.375 Sum_probs=251.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...+.+|.++|+++.|+|++.+|+|||.||+|+|||+++++....+.+|...|..++|.+++. ++++++.|++|++||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 456889999999999999999999999999999999999999999999999999999998655 567778899999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
+.++++++.+.+|...|.+++|+|++++|++|+.|++|++||++++.+...+. +...+..+.++|++.++++|+.|++|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999999998876553 33445677899999999999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccC--------------------CCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--------------------GKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
++||+++.. .. .....+...+.+++|+|+ +.+|++++.|+.|++||+.+++++..
T Consensus 259 ~vwd~~~~~--~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 259 RVWVVATKE--CK---AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp EEEETTTCC--EE---EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCc--ee---eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 999997632 11 122345567889999996 67899999999999999999999888
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+.+ |...+.+++|+|++++|++|+.|+.|++||..++..+..+. +|..+|++++|+|+++++++|+ +.+++|..
T Consensus 334 ~~~---h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 334 LVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 866 45568899999999999999999999999998887777664 6999999999999999999986 57999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=326.85 Aligned_cols=289 Identities=21% Similarity=0.290 Sum_probs=247.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
++..++|++|.+.|+++.|+|+|++|+|||.||+|+|||..++.....+..+...+..++|++++. .+++++.|+.++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN--YVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS--EEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC--EEEEEeCCCeEE
Confidence 455678999999999999999999999999999999999999998888888888999999998765 566677899999
Q ss_pred EEEcCCC----ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEE
Q psy16316 91 YLSLHDN----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 91 ~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (335)
+|++.++ +....+.+|.+.|.++.|++++ .+++++.|++|++||++++++...+. +.+.+..+.++|++.++++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9999765 3566788999999999999876 59999999999999999887765553 3455677899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
|+.|++|++||++... .. .....+...+.+++|+|++++|++++.|+.|++||+++++.+..+. +......+.+
T Consensus 202 g~~d~~v~~wd~~~~~--~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~ 275 (340)
T 1got_B 202 GACDASAKLWDVREGM--CR---QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275 (340)
T ss_dssp EETTSCEEEEETTTCS--EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEE
T ss_pred EeCCCcEEEEECCCCe--eE---EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEE
Confidence 9999999999998632 12 2223455678999999999999999999999999999988776654 2233446889
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
++|+|++++|++|+.|+.|++||..++.....+. +|.++|.+++|+|++.++++|+ +.+++|.
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999888777774 6999999999999999999997 5689994
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-45 Score=318.26 Aligned_cols=295 Identities=25% Similarity=0.446 Sum_probs=253.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+.+...+.+|.+.|++++|+|+|++||+|+.||+|++||..+++....+..|...+..++|.+++. .+++++.|+.+
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i 89 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTL 89 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCC--EEEEECCCCEE
Confidence 4677788999999999999999999999999999999999999988888888999999999998765 45666789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
++||+.+++.+..+++|...|.+++|+|++++|++|+.|++|++||++++++...+. +...+..+.++|++.++++++.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999999888766553 3445667889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||++... ... .........+..++|+|++++|++++.|+.|++||+.+++++..+.++......+.....
T Consensus 170 d~~i~~wd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 DGLCRIWDTASGQ--CLK--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp TSCEEEEETTTCC--EEE--EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred CCcEEEEECCCCc--eee--EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 9999999998632 111 222334456788999999999999999999999999999998888776655444444444
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee----ceeEEeccc
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC----TNLAFWIPT 311 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~----~~~~~w~~~ 311 (335)
.+++.+|++|+.||.|++||+.++.....+. +|.+.|.+++|+|+++++++++ +.+++|..+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 5788999999999999999999988877774 6999999999999999999874 569999753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=322.20 Aligned_cols=286 Identities=18% Similarity=0.298 Sum_probs=244.5
Q ss_pred eeeeccCCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 14 AKLFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.+.+++|+++|.+++|+|+ +.+|+|||.|++|+|||+..+.. ...+.+|...+..+++.++.. ++++++.|+
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~ 102 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP--IAASSSLDA 102 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS--EEEEEETTS
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC--EEEEEeCCC
Confidence 3667899999999999985 67999999999999999987754 335677888999999987654 567788899
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 166 (335)
+|++||+.+++.+..+.+|...+.+++|+|++++|++|+.|+.|++||+++++....+.. ...+..++|+|+++++++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999998876655433 3345678899999999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
+.|+.|++||+++.. . ......+...+.+++|+|++++|++++.|+.|++||++++++...+.+ +...+.++
T Consensus 183 ~~dg~i~iwd~~~~~--~---~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~ 254 (321)
T 3ow8_A 183 AIDGIINIFDIATGK--L---LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNV 254 (321)
T ss_dssp ETTSCEEEEETTTTE--E---EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC---CSSCEEEE
T ss_pred cCCCeEEEEECCCCc--E---EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC---CCCceEEE
Confidence 999999999997632 1 222334556788999999999999999999999999999988877765 45668899
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+|+|++++|++|+.|++|++||+.++..+..+. +|.+.|++++|+|++.+|++++ +.+++|..
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999998887774 6999999999999999999987 56899964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=321.72 Aligned_cols=289 Identities=18% Similarity=0.270 Sum_probs=244.4
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+..+.|++|.+.|++++|+|+|++|||||.||+|+|||..+++....+..+...+..++|+|++. .+++++.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC--AIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS--EEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC--EEEEeeCCCCEEE
Confidence 44578999999999999999999999999999999999999988888888888899999998765 5677788999999
Q ss_pred EEcCCC------ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECC--CCCE
Q psy16316 92 LSLHDN------KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDP--EGLI 162 (335)
Q Consensus 92 ~~~~~~------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 162 (335)
|++... .....+.+|...|.+++|+|++..|++++.|++|++||++++++...+. +...+..+.+.| ++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 998643 3456677899999999999999999999999999999999988776654 334455667776 5789
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+++|+.|++|++||+++.. .. .....+...+.+++|+|++.+|++++.|+.|++||+++++....+..+ .....
T Consensus 213 l~sgs~Dg~v~~wd~~~~~--~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-~~~~~ 286 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQ--CV---QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-SIIFG 286 (354)
T ss_dssp EEEEETTSCEEEEETTTCC--EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSC
T ss_pred EEEEeCCCeEEEEECCCCc--EE---EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-Ccccc
Confidence 9999999999999998632 22 222345667899999999999999999999999999998776655432 22335
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
+.+++|+|++++|++|+.|+.|++||+.++..+..+. +|.++|++++|+|++.+|++|+ +.+++|.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 6789999999999999999999999999888877774 6999999999999999999997 5688884
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=331.33 Aligned_cols=295 Identities=18% Similarity=0.294 Sum_probs=245.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+...++|++|++.|++++|+|+|++|||||.||+|+|||..+++....+..|...+..++|++++. .+++++.|+.++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~ 133 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ--SVACGGLDSACS 133 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS--EEEECCSSSCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC--EEEEeeCCCcEE
Confidence 334578999999999999999999999999999999999999998888888999999999998765 567788999999
Q ss_pred EEEcCCC-------ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE------ecCCcceEEE
Q psy16316 91 YLSLHDN-------KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH------VSGSRPIAAF 156 (335)
Q Consensus 91 ~~~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~------~~~~~~~~~~ 156 (335)
+|++.+. ...+.+.+|.+.|.++.|.|++ ..|+||+.|++|++||++++++...+. +...+..+.+
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 9998653 2346788999999999999974 579999999999999999988766542 1222344566
Q ss_pred CC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 157 DP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 157 ~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
.+ ++.++++|+.|++|++||++.... ... ....+...+.+++|+|++.+|++++.|+.|++||+++++++..+..
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSR-AVR---TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCC-CCE---EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCc-ceE---EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 55 889999999999999999974321 222 2234566788999999999999999999999999999988877654
Q ss_pred ccc----CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC---CCCCCCeEEEEeCCCCcEEEeee--ceeE
Q psy16316 236 FLN----NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD---ADHPSPVQTIQFNPKFNMMASAC--TNLA 306 (335)
Q Consensus 236 ~~~----~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~~~s~~--~~~~ 306 (335)
+.. +...+.+++|+|+|++|++|+.||.|++||...+.....+. .+|.++|++++|+|++.+|++|+ ++++
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 322 22347789999999999999999999999998887665552 56999999999999999999996 5799
Q ss_pred Eeccc
Q psy16316 307 FWIPT 311 (335)
Q Consensus 307 ~w~~~ 311 (335)
+|.+.
T Consensus 370 iW~~~ 374 (380)
T 3iz6_a 370 IWAFS 374 (380)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=316.61 Aligned_cols=296 Identities=19% Similarity=0.307 Sum_probs=237.2
Q ss_pred hcccceeeeccCCc-cEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--ee-ecccccceEEEEecCCCeeEEeecC
Q psy16316 9 RSYKVAKLFRENTD-KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TV-FSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 9 ~~~~~~~~~~~h~~-~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
..+++.+.+++|.+ .|.+++|+|+|++||||+.|++|+|||++++.... .+ .+|...|..++|++++. .+++++
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s 80 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASAS 80 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEE
T ss_pred ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEE
Confidence 35778899999998 99999999999999999999999999998876432 22 46778899999998765 566777
Q ss_pred CCCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE---E-EecCCcceEEECC
Q psy16316 85 IDDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI---M-HVSGSRPIAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~---~-~~~~~~~~~~~~~ 158 (335)
.|+++++|++..+ +++..+++|...|.+++|+|++++|++|+.|++|++||++.+..... + .+...+..+.|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 8999999999876 45788999999999999999999999999999999999987653322 2 1234456788999
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-----------
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG----------- 227 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~----------- 227 (335)
++.++++|+.|++|++||.+... .........+...+.+++|+|++++|++++.|+.|++|+....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDD---WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCEEEEEeCCCcEEEEEecCCC---EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 99999999999999999987521 1112223455667899999999999999999999999996422
Q ss_pred ----eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe--------eEEEeCCCCCCCeEEEEeCCCC
Q psy16316 228 ----QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF--------KVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 228 ----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~--------~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
+++..+.+ .+...+.+++|+|++..|++++.|+.|++|+...+. .......+|...|++|+|+|++
T Consensus 238 ~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 238 DPSWKCICTLSG--FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp -CEEEEEEEECS--SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred CCccceeEEecC--CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 22223322 145678899999999999999999999999976432 1222345799999999999998
Q ss_pred c-EEEeee--ceeEEeccc
Q psy16316 296 N-MMASAC--TNLAFWIPT 311 (335)
Q Consensus 296 ~-~~~s~~--~~~~~w~~~ 311 (335)
+ +||||+ +.+++|...
T Consensus 316 ~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TTEEEEEETTSCEEEEEEC
T ss_pred ceEEEEcCCCCcEEEEEec
Confidence 4 899886 679999763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=311.50 Aligned_cols=290 Identities=16% Similarity=0.234 Sum_probs=237.6
Q ss_pred hcccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCC-----cceeeeecccccceEEEEecCCCeeEEee
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELG-----TNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
+.+.+..+|++|+++|++++|+|++ ++|+|||.|++|++||+... .....+.+|...+..++|++++. .+++
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s 82 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALS 82 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEE
Confidence 3577888999999999999999965 89999999999999998653 23456678889999999998765 5667
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC----
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP---- 158 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~---- 158 (335)
++.|++|++||+.+++.++.+.+|...|.+++|+|++++|++|+.|++|++||++.........+...+..+.+.|
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 7789999999999999999999999999999999999999999999999999997543222223334445566776
Q ss_pred --CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 159 --EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 159 --~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
++..+++++.|++|++||++... .......+...+.+++|+|++++|++++.|+.|++||+.+++++..+..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 236 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA- 236 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-
T ss_pred CCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-
Confidence 45589999999999999997532 1122234566789999999999999999999999999999998887754
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC-------CCCCCeEEEEeCCCCcEEEeee--ceeEE
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA-------DHPSPVQTIQFNPKFNMMASAC--TNLAF 307 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~~~s~~--~~~~~ 307 (335)
...+.+++|+|++.+|++++.++ +++|++..+.....+.. .|...+.+++|+|+|++|++|+ +.|++
T Consensus 237 ---~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 237 ---QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp ---CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 24688999999999999988655 99999987765554432 2456799999999999999996 56999
Q ss_pred ecc
Q psy16316 308 WIP 310 (335)
Q Consensus 308 w~~ 310 (335)
|..
T Consensus 313 Wd~ 315 (319)
T 3frx_A 313 WQV 315 (319)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=337.77 Aligned_cols=301 Identities=19% Similarity=0.209 Sum_probs=233.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCC------------
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQ------------ 76 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------ 76 (335)
.+..+.|.+|++.|++++|+|+|++||||+.|++|+|||+.+++. ...+..|...|..++|++++.
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 456678999999999999999999999999999999999875432 223333444444444444322
Q ss_pred -------------------------------eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEe
Q psy16316 77 -------------------------------AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISG 125 (335)
Q Consensus 77 -------------------------------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~ 125 (335)
...+++++.|+++++||..++++...+.+|...|++++|+|++++|+||
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 1235677789999999999999999999999999999999999999999
Q ss_pred eCCCcEEEeecCCCCceeEE--------EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCcee-----------
Q psy16316 126 SYDKTVRLWDLRSPNCQGIM--------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS----------- 186 (335)
Q Consensus 126 s~D~~i~vWd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----------- 186 (335)
+.|++|++||+.++++...+ .+.+.+..++|+|++.++++++.|++|++||+++.......
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999988776554 23445667899999999999999999999998753210000
Q ss_pred ---------------------------eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec-ccc-
Q psy16316 187 ---------------------------NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA-GFL- 237 (335)
Q Consensus 187 ---------------------------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~- 237 (335)
.......+...+.+++|+|++++|++++.|+.|++||+.++++...+. +|.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 011122455678899999999999999999999999998776543220 000
Q ss_pred -----------------------------------------------------------------------------cCC
Q psy16316 238 -----------------------------------------------------------------------------NNK 240 (335)
Q Consensus 238 -----------------------------------------------------------------------------~~~ 240 (335)
.+.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 011
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
..+.+++|+|||++||+|+.|++|++||+..+........+|+..|++++|+|++++|++++ +++++|...
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcC
Confidence 23567899999999999999999999999776432211246999999999999999999997 569999764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=339.17 Aligned_cols=294 Identities=21% Similarity=0.326 Sum_probs=236.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-------cccccceEEEEecCCCeeEEee
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-------SKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
.++..+.|.+|.+.|.+++|+|+|++||||+.|++|+|||+.+++....+. +|...|..++|++++. .+++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s 256 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIAS 256 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEE
T ss_pred CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC--EEEE
Confidence 456677899999999999999999999999999999999999988877663 6788899999998765 4567
Q ss_pred cCCCCeEEEEEcCCCceEe-------------------------------------------eecCCCCCeEEEEECCCC
Q psy16316 83 TKIDDTVRYLSLHDNKYIR-------------------------------------------YFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~-------------------------------------------~~~~H~~~V~~~~~~~~~ 119 (335)
++.|++|++||+.+++.+. .+.+|...|++++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 7789999999998765443 446899999999999999
Q ss_pred CEEEEeeCCCcEEEeecCCCCceeEE------------------------------------------------------
Q psy16316 120 DTFISGSYDKTVRLWDLRSPNCQGIM------------------------------------------------------ 145 (335)
Q Consensus 120 ~~l~s~s~D~~i~vWd~~~~~~~~~~------------------------------------------------------ 145 (335)
++|+|++.|++|++||+.++.+....
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 99999999999999998765432110
Q ss_pred -----------------------------EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 146 -----------------------------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 146 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
.+......++|+|+++++++|+.|++|++||+... ....... ..+..
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~---~~~~~~~-~~h~~ 492 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA---SVSEVKT-IVHPA 492 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT---EEEEEEE-EECSS
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC---ceeeeec-cCCCC
Confidence 00011235689999999999999999999998752 1111222 34556
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCC-CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYN-GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
.+.+++|+|++++|++++.|+.|++|++.+ +++.... ....|...|.+++|+||+++||+|+.|++|++||+.++.+.
T Consensus 493 ~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee-eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 789999999999999999999999999987 5554321 11225677899999999999999999999999999876532
Q ss_pred E-EeCCCC-CCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 276 C-VLDADH-PSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 276 ~-~~~~~h-~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
. ....+| ...|++++|+|++. +++++ +++++|.++
T Consensus 572 ~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 572 PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 2 334578 89999999999998 88775 679999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=313.33 Aligned_cols=282 Identities=15% Similarity=0.192 Sum_probs=220.7
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC-----------cceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-----------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
..|.+.|.+++|+|||++|++++ |+++|+||.... ........+..+|..++|.++. .+++++.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---GILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---eEEEEECC
Confidence 46888999999999999999988 778888874211 1112223445679999999874 24466789
Q ss_pred CeEEEEEcCCCceEee----ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC-
Q psy16316 87 DTVRYLSLHDNKYIRY----FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG- 160 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~----~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~- 160 (335)
++|++||+.+++.+.. +.+|.+.|++++|+|++++|+||+.|++|++||++++++...+. +...+..+.|++++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 9999999998875543 45899999999999999999999999999999999988776553 45556778899987
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
.++++++.|++|++||+++.+. ...+.. ..+...+.+++|+|+ +.+|++++.|+.|++||+++++++..+.+ |
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~--~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h 256 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKP--ASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---H 256 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSC--EEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---C
T ss_pred Cceeeeccccccccccccccce--eeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---C
Confidence 5889999999999999986432 222211 122334678999995 56888999999999999999999888876 4
Q ss_pred CCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee--ceeEEeccc
Q psy16316 240 KGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--TNLAFWIPT 311 (335)
Q Consensus 240 ~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--~~~~~w~~~ 311 (335)
...|.+++|+|++ ++||+|+.|++|+|||..++... .+ .+|.+.|++|+|+|+++ ++++++ +.|++|..+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 5568899999998 58999999999999999887654 34 46999999999999986 566775 679999763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=317.87 Aligned_cols=284 Identities=17% Similarity=0.166 Sum_probs=221.4
Q ss_pred eccCCccEEEEEECCCCCEEEEecC------CCeEEEEEccCCcce----eeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSE------DDQIVIYDCELGTNK----RTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~------Dg~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
...|++.|++|+|||||++|||||. |++|++|+..++... .....+...|..++|.+++. + ++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~--~-l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG--I-LVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE--E-EEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC--E-EEEECC
Confidence 4579999999999999999999997 788999998776543 23345677899999998753 2 234569
Q ss_pred CeEEEEEcCCCceEe----eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC-
Q psy16316 87 DTVRYLSLHDNKYIR----YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG- 160 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~- 160 (335)
++|++||+.+++... ...+|...|++++|+|++++|++|+.|++|++||++++++...+. +...+..++|++++
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 999999998876543 345899999999999999999999999999999999887766553 34456678899887
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
.++++++.|++|++||+++.... ... ....+...+.+++|+|++ .+|++++.|+.|++||++++++.+.+.+ +
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~--~~~-~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~---~ 268 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPA--TRI-DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---H 268 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCB--CBC-CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC---C
T ss_pred ceeeeeccCCceEEEECCCCcee--eee-eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec---c
Confidence 47889999999999999864321 111 112334557889999985 6788999999999999999988887765 4
Q ss_pred CCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC-CCcEEEeee--ceeEEeccc
Q psy16316 240 KGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 240 ~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~~--~~~~~w~~~ 311 (335)
...+.+++|+|++ ++||+|+.|++|+|||+.++.....+ +|.++|++|+||| ++.+|++++ +.|++|.++
T Consensus 269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 4568899999987 58999999999999999988766543 6999999999999 789999886 679999753
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=309.54 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=229.5
Q ss_pred hcccceeeeccCCccEEEEEE-----CC-CCCEEEEecCCCeEEEEEccCCc-------ceeeeecccccceEEEEecCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDY-----SA-DGLLLISCSEDDQIVIYDCELGT-------NKRTVFSKKYGVDLIRFTHAK 75 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~-----s~-~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 75 (335)
..+++...|++|++.|+++.| ++ ++++|||||.|++|++||+...+ ....+.+|...|..++|+++.
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 356778899999999999999 76 99999999999999999997542 345567788899999998865
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcc
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRP 152 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~ 152 (335)
. ++++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+......... .+...+.
T Consensus 89 ~--~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 89 C--FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp T--EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred C--EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 5 5567778999999999999999999999999999999999999999999999999999743211111 1223345
Q ss_pred eEEECCCC----------CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 153 IAAFDPEG----------LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 153 ~~~~~~~~----------~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
.+.++|++ .++++++.|++|++||.+. ... .....+...+.+++|+|++++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~---~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIR---YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEE---EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---cee---EEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 67788776 7899999999999999532 111 1223455678899999999999999999999999
Q ss_pred ECCCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE--EeC----------CCCCCCeEEE
Q psy16316 223 DAYNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC--VLD----------ADHPSPVQTI 289 (335)
Q Consensus 223 d~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~--~~~----------~~h~~~v~~v 289 (335)
|+.+.. ....+. +...+.+++|+|+++++++| .|+.|++||+.++.... .+. .+|...|+++
T Consensus 241 d~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 241 DILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp ESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred ECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 995433 333321 23458899999999888765 57789999997654322 332 1588899999
Q ss_pred EeCCCCcEEEeee--ceeEEeccc
Q psy16316 290 QFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 290 ~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+|+|++++|++|+ +.+++|...
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEE
Confidence 9999999999986 578999753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=313.87 Aligned_cols=284 Identities=20% Similarity=0.393 Sum_probs=234.0
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc------------------ccceEEEEecCCCeeEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK------------------YGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 80 (335)
+|.+.|++++|+|||++||+|+ |++++||++.+++....+..+. ..+..++|++++. .+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~--~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS--EE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC--EE
Confidence 6999999999999999999987 7899999999988766554332 1377889988765 45
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC-C
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-E 159 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (335)
++++.|++|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||++++++...+........++++| +
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 667789999999999999999999999999999999999999999999999999999988777666666667788998 8
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEE----eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe-------
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFK----FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ------- 228 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~------- 228 (335)
+.++++|+.|++|++||+++.. ....+. ....+...+.+++|+|++++|++++.|+.|++||+++..
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 9999999999999999997632 111111 112345678899999999999999999999999997643
Q ss_pred -----eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC------CCcE
Q psy16316 229 -----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP------KFNM 297 (335)
Q Consensus 229 -----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp------~~~~ 297 (335)
+...+. .|...+.+++|+|++++|++|+.|+.|++||..++.....+. +|.+.|.+++|+| ++++
T Consensus 297 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 297 PNSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp ----CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEE
T ss_pred CCCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCCCE
Confidence 223333 355678899999999999999999999999999988877774 6999999999876 6889
Q ss_pred EEeee--ceeEEeccc
Q psy16316 298 MASAC--TNLAFWIPT 311 (335)
Q Consensus 298 ~~s~~--~~~~~w~~~ 311 (335)
+++|+ +.+++|...
T Consensus 373 l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 373 FATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEECCCCcEEECccc
Confidence 99986 569999764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=303.90 Aligned_cols=293 Identities=16% Similarity=0.244 Sum_probs=223.8
Q ss_pred HhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeee-ec-ccccceEEEEecCCCeeEEeec
Q psy16316 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTV-FS-KKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 8 ~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
++++++.+.|++|+++|.+++|+|+ +||||+.|++|++||++.+. ....+ .. |...|..++|+|++. +++++
T Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~ 76 (330)
T 2hes_X 1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--LLAAG 76 (330)
T ss_dssp --CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS--EEEEE
T ss_pred CcccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC--EEEEE
Confidence 3567889999999999999999998 99999999999999998753 33333 23 778899999998754 56677
Q ss_pred CCCCeEEEEEcCC-------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-C---ceeEE-EecCCc
Q psy16316 84 KIDDTVRYLSLHD-------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-N---CQGIM-HVSGSR 151 (335)
Q Consensus 84 ~~d~~i~~~~~~~-------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~---~~~~~-~~~~~~ 151 (335)
+.|++|++|++.. .+.+..+++|...|.+++|+|++++|+||+.|++|++||++.. . +...+ .+...+
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 7899999999853 3567788999999999999999999999999999999999533 2 22222 233456
Q ss_pred ceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC--CCEEEEEeCCCeEEEEECCCC--
Q psy16316 152 PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--GKYILISTNGSIIRTFDAYNG-- 227 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~~~~i~i~d~~~~-- 227 (335)
..+.|+|++.++++|+.|++|++||.+... .........+...+.+++|+|+ +..|++++.|+.|++||+..+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 678899999999999999999999986421 1222333456667889999999 778999999999999998754
Q ss_pred ------eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe--eEEEeCCCCCC-CeEEEEeCC--CCc
Q psy16316 228 ------QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF--KVCVLDADHPS-PVQTIQFNP--KFN 296 (335)
Q Consensus 228 ------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~--~~~~~~~~h~~-~v~~v~~sp--~~~ 296 (335)
.+...+.. .+...+.+++|+|++ +|++|+.||.|++||..++. ........|.. .|++++|+| ++.
T Consensus 234 ~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 234 DDQQEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp TSCEEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred cccceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence 22333221 255678999999765 89999999999999987763 23333456877 899999999 688
Q ss_pred EEEeee--ceeEEecc
Q psy16316 297 MMASAC--TNLAFWIP 310 (335)
Q Consensus 297 ~~~s~~--~~~~~w~~ 310 (335)
+||+|+ +++++|.+
T Consensus 311 ~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 311 ILATGGDDGIVNFWSL 326 (330)
T ss_dssp CEEEEETTSEEEEEEC
T ss_pred EEEEecCCCcEEEEEe
Confidence 999886 57999975
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=285.91 Aligned_cols=290 Identities=19% Similarity=0.263 Sum_probs=235.2
Q ss_pred hcccceeeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCcc-----eeeeecccccceEEEEecCCCeeEEee
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTN-----KRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
+.+.+..+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+.+. ...+.+|...|..++|++++. .+++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEE
Confidence 456777889999999999999998 68999999999999999976543 445667888999999998765 4566
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCC-
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPE- 159 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~- 159 (335)
++.|+.+++|+............+...+..+.++++++.|++|+.|+.+++||+......... .+......+.+.++
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 778999999999999988888899999999999999999999999999999998765432221 12233445667665
Q ss_pred -CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 160 -GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 160 -~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
..++++++.|++|++||++... .......+...+.+++|+|++++|++++.|+.|++||+++.+++..+..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--- 255 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--- 255 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---
T ss_pred CCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---
Confidence 4678899999999999997632 1222334566789999999999999999999999999999988877654
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC--------CCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--------ADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~--------~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
...+..++|+|++.+ ++++.|+.|++||+..+.....+. ..|...|++++|+|++++|++|+ +.|++|
T Consensus 256 -~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 256 -GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 345788999998765 556679999999998776554432 35889999999999999999987 568999
Q ss_pred cc
Q psy16316 309 IP 310 (335)
Q Consensus 309 ~~ 310 (335)
.+
T Consensus 334 ~~ 335 (340)
T 4aow_A 334 QV 335 (340)
T ss_dssp EE
T ss_pred eC
Confidence 75
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=309.42 Aligned_cols=282 Identities=25% Similarity=0.407 Sum_probs=235.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.+.+|.+.|.+++|+|++++|++++.|++|++||.... ....+..+...+..++|++++. .+++++.|+.++
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~v~ 369 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVK 369 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC--EEEEEeCCCEEE
Confidence 3556778999999999999999999999999999999998644 4556677888899999988765 455666799999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcC
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
+|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||... +....+ .+...+..++|+|++.++++++.|
T Consensus 370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 9995 5677888999999999999999999999999999999999643 433333 344455678899999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
++|++||... ... .....+...+.+++|+|++++|++++.|+.|++||. ++++++.+.+ |...|.+++|+
T Consensus 448 ~~v~~w~~~~---~~~---~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~---h~~~v~~l~~s 517 (577)
T 2ymu_A 448 KTVKLWNRNG---QLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFS 517 (577)
T ss_dssp SEEEEEETTS---CEE---EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC---CSSCEEEEEEC
T ss_pred CEEEEEECCC---CEE---EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC---CCCCEEEEEEc
Confidence 9999999643 122 222345567889999999999999999999999995 6777777765 45668899999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
|++++||+++.||.|++||. ++..+..+. +|.++|++++|+|++.+|++++ +++++|+
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999996 566666664 6999999999999999999987 5699995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=293.46 Aligned_cols=297 Identities=15% Similarity=0.187 Sum_probs=235.7
Q ss_pred HhcccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecC
Q psy16316 8 IRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 8 ~~~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
++.+++.+.+.+|.+.|++++|+|+| ++||+|+.||+|+|||+.+++....+. +|...+..++|++.. ...+++++
T Consensus 60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 138 (383)
T 3ei3_B 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSS 138 (383)
T ss_dssp HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEe
Confidence 35688889999999999999999999 999999999999999999887766654 578889999998842 34566677
Q ss_pred CCCeEEEEEcCCCceEeeecC---CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPG---HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEG 160 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~---H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~ 160 (335)
.|+.+++||+.. +.+..+.. |...|.+++|+|++++|++|+.|+.|++||++ ++....+ .+...+..++|+|++
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSC
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCC
Confidence 899999999986 44555544 45889999999999999999999999999995 4444333 345556778999999
Q ss_pred C-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 161 L-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 161 ~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
. ++++++.|++|++||++........ ... ..+...+.+++|+| ++.+|++++.|+.|++||++++++...+.++..
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~-~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSY-IAE-MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCE-EEE-EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccce-EEE-ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 8 9999999999999999874321111 111 13556789999999 999999999999999999999887776664431
Q ss_pred ----CC----------CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC-CCCCeEEEEeCCCCcEEEeee-
Q psy16316 239 ----NK----------GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASAC- 302 (335)
Q Consensus 239 ----~~----------~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~~s~~- 302 (335)
+. ..+..++|+|++++ +|+.|+.|++||+.++..+..+... |.+.+..++|+|++.+|++++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd 372 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMG 372 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEET
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecC
Confidence 11 12333566666666 7789999999999999887777532 567788889999999999886
Q ss_pred ceeEEeccc
Q psy16316 303 TNLAFWIPT 311 (335)
Q Consensus 303 ~~~~~w~~~ 311 (335)
+.+++|.++
T Consensus 373 ~~i~iw~~~ 381 (383)
T 3ei3_B 373 FNILIWNRE 381 (383)
T ss_dssp TEEEEEECC
T ss_pred CcEEEEecC
Confidence 579999753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=305.07 Aligned_cols=302 Identities=17% Similarity=0.267 Sum_probs=235.9
Q ss_pred HHhcccceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCccee--eeecccccceEEEEecCCCeeEEeec
Q psy16316 7 VIRSYKVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKR--TVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 7 ~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.++.+++.+...+|.+.|+||+|+| ++.+||+|+.||+|+|||+.+++... ...+|...|..++|+|... ..++++
T Consensus 105 ~~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~-~~l~s~ 183 (435)
T 4e54_B 105 TLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT-NQFYAS 183 (435)
T ss_dssp TTTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-TEEEEE
T ss_pred cccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-CEEEEE
Confidence 3456778888899999999999999 56799999999999999998876543 3456888999999987432 356677
Q ss_pred CCCCeEEEEEcCCCceEeeecCC--CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGH--TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H--~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
+.|++|++||++++........| ...+.+++|+|++++|++|+.||.|++||++.........+...+..+.|+|++.
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence 88999999999876554444433 4567899999999999999999999999997644333223445566788999875
Q ss_pred -EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC-
Q psy16316 162 -IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN- 239 (335)
Q Consensus 162 -~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~- 239 (335)
++++|+.|++|++||++...... .+.....+...+.+++|+|++.+|++++.|+.|++||+.++++...+..+...
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKA--SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSS--CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred eEEEEecCcceeeEEecccccccc--eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 78899999999999998744221 11222345567889999999999999999999999999999887776554321
Q ss_pred --CCCceEEEEcCCCcEEEEEe------------CCCcEEEEECCCCeeEEEeCCCCCCCeEEE-EeCCCCcEEEeee-c
Q psy16316 240 --KGCPLEASFTPDSKYVISGS------------TDGRIHIWNAEKGFKVCVLDADHPSPVQTI-QFNPKFNMMASAC-T 303 (335)
Q Consensus 240 --~~~v~~~~~sp~~~~l~tgs------------~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v-~~sp~~~~~~s~~-~ 303 (335)
...+..+.|+|++.++++++ .++.|++||..++.....+..+|...|.++ +|||+|.+||+|+ +
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY 421 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence 11234567888877777764 345799999999988888777899999987 6999999999885 5
Q ss_pred eeEEeccc
Q psy16316 304 NLAFWIPT 311 (335)
Q Consensus 304 ~~~~w~~~ 311 (335)
.|++|.+.
T Consensus 422 ~i~iW~~~ 429 (435)
T 4e54_B 422 HILIWSQQ 429 (435)
T ss_dssp EEEECCCC
T ss_pred cEEEEECC
Confidence 79999753
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=286.16 Aligned_cols=289 Identities=16% Similarity=0.210 Sum_probs=245.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+.....|++|++.|++++|+|+|++|++|+.||.|++||+.+++....+..|...+..++|.+++. .+++++.|+.|+
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 99 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK--YCVTGSADYSIK 99 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEE
Confidence 344466899999999999999999999999999999999999999888888999999999998655 445666799999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEE------------EecC--Cc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIM------------HVSG--SR 151 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~------------~~~~--~~ 151 (335)
+||+.+++.+..+. |...|.+++|+|+++.+++++.+ +.|++||+......... ...+ ..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999998888 88999999999999999999999 99999999866432211 1111 45
Q ss_pred ceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 152 PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
..+.++|+++++++++.++.|++||++... . .......+...+.+++|+|++.+|++++.++.|++||+.+++...
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNY-E---YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTT-E---EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCc-E---eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 567899999999999999999999997521 1 122223345678899999999999999999999999999998887
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeCCC--------------cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDG--------------RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg--------------~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 297 (335)
.+. +...+..++|+|+++++++++.++ .+++||..++.....+. +|.+.|++++|+|++++
T Consensus 255 ~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 255 KYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp EEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSE
T ss_pred eec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEEECCCCCE
Confidence 765 345678899999999999999998 89999999988877774 59999999999999999
Q ss_pred EEeee--ceeEEeccc
Q psy16316 298 MASAC--TNLAFWIPT 311 (335)
Q Consensus 298 ~~s~~--~~~~~w~~~ 311 (335)
+++++ +.+++|.++
T Consensus 330 l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEcCCCeEEEEECc
Confidence 99996 568999764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=292.61 Aligned_cols=295 Identities=15% Similarity=0.285 Sum_probs=242.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc------ceeeeecccccceEEEEecC----C-CeeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT------NKRTVFSKKYGVDLIRFTHA----K-QAAI 79 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~~----~-~~~~ 79 (335)
....+.+++|.+.|++++|+| .+|++|+.||+|++||+++++ ....+..|...+..++|.++ + ....
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 455677899999999999999 899999999999999999988 67778888899999999987 3 1145
Q ss_pred EeecCCCCeEEEEEcCCCce-----EeeecCC-----CCCeEEEEEC----CCCCE-EEEeeCCCcEEEeecCC------
Q psy16316 80 HASTKIDDTVRYLSLHDNKY-----IRYFPGH-----TKKVNSLCLS----PIDDT-FISGSYDKTVRLWDLRS------ 138 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~-----~~~~~~H-----~~~V~~~~~~----~~~~~-l~s~s~D~~i~vWd~~~------ 138 (335)
+++++.|+.|++|++.+++. +..+.+| ...|.+++|+ |+++. |++++.|+.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 66677899999999998887 8888899 5999999999 99999 99999999999999988
Q ss_pred CCcee-----EEE--------ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCC---CccceEEE
Q psy16316 139 PNCQG-----IMH--------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK---ECDWTGIK 202 (335)
Q Consensus 139 ~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~ 202 (335)
+.... .+. ....+..+.++|++ ++++++.|+.|++||++.. .....+.....+ ...+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC--ceeEEEeccccccccCCccceEE
Confidence 55554 443 24456778999999 9999999999999999863 222222221113 56788999
Q ss_pred EccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccc----------cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 203 FSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFL----------NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 203 ~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
|+|++.+|++++.+ +.|++||+++++.+..+.... .+...+.+++|+|++++|++|+.||.|++||+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999 999999999998888776510 04567889999999999999999999999999
Q ss_pred CCCeeEEEeCC-----CC---------------CCCeEEEEeCCCC----------cEEEeee--ceeEEecc
Q psy16316 270 EKGFKVCVLDA-----DH---------------PSPVQTIQFNPKF----------NMMASAC--TNLAFWIP 310 (335)
Q Consensus 270 ~~~~~~~~~~~-----~h---------------~~~v~~v~~sp~~----------~~~~s~~--~~~~~w~~ 310 (335)
.++.....+.. .| ..+|++++|+|++ +++++++ +.+++|..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99888777751 46 8999999999998 7888886 56899975
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=284.29 Aligned_cols=248 Identities=17% Similarity=0.224 Sum_probs=217.7
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+...+.+|...|.+++|++++.+++||+.|++|++||+++++....+..+...+..++|++++. .+++++.|+.+++|
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIF 149 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS--EEEEECTTSEEEEE
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEE
Confidence 3456899999999999999999999999999999999999998888888888888999998765 45667789999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
++.+++....+..|...|.+++|+|++++|++|+.|+.|++||++++++...+. +...+..++|+|++.++++|+.|++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 999999999999999999999999999999999999999999999887765553 3445677899999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|++||++... . ......+...+.+++|+|++++|++++.|+.|++||+.+++++..+.+ +...+.+++|+|+
T Consensus 230 i~iwd~~~~~--~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---h~~~v~~v~~s~~ 301 (321)
T 3ow8_A 230 IKIYDVQHAN--L---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD---HQDQVWGVKYNGN 301 (321)
T ss_dssp EEEEETTTCC--E---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTT
T ss_pred EEEEECCCcc--e---eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC---CCCcEEEEEECCC
Confidence 9999997632 1 122334566788999999999999999999999999999999888765 4566889999999
Q ss_pred CcEEEEEeCCCcEEEEECC
Q psy16316 252 SKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~ 270 (335)
+++|++++.|+.|++||..
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999963
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=312.34 Aligned_cols=289 Identities=19% Similarity=0.258 Sum_probs=234.8
Q ss_pred cccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCc-----ceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGT-----NKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+.+...+++|++.|++++|+|++ .+|+|||.|++|+|||+.... ....+.+|...|..++|++++. .++++
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sg 448 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSG 448 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEE
T ss_pred ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEE
Confidence 356667899999999999999875 799999999999999997643 3456678889999999998765 56677
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPE 159 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (335)
+.|++|++||+.+++.++.+.+|...|.+++|+|++++|+||+.|++|++||+......... .+...+.++.|+|+
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999998654322211 12233567889998
Q ss_pred C--CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 160 G--LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 160 ~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+ ..+++++.|++|++||++... . ......+...+.+++|+|++++|++++.|+.|++||+.+++++..+..
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~--~---~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-- 601 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCK--L---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-- 601 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCC--E---EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--
T ss_pred CCcceEEEEeCCCeEEEEECCCCc--E---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--
Confidence 6 689999999999999997632 1 122344566789999999999999999999999999999988776643
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------------CCCCeEEEEeCCCCcEEE
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------------HPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------------h~~~v~~v~~sp~~~~~~ 299 (335)
...+.+++|+|++.+|++++. +.|++||+.++.....+... +...|++++|||++.+|+
T Consensus 602 --~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 602 --NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp --SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred --CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 345788999999988888764 56999999988766554321 122478999999999999
Q ss_pred eee--ceeEEecc
Q psy16316 300 SAC--TNLAFWIP 310 (335)
Q Consensus 300 s~~--~~~~~w~~ 310 (335)
+|+ +.|++|..
T Consensus 679 sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 679 SGYTDGVIRVWGI 691 (694)
T ss_dssp EEETTSEEEEEEC
T ss_pred EEcCCCeEEEEec
Confidence 996 56999975
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=297.96 Aligned_cols=249 Identities=23% Similarity=0.392 Sum_probs=217.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.+++|.+.|.+++|+|+|++|+|||.|++|+|||++++++...+.+|...+..++|.+++. .+++++.|++|+
T Consensus 140 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~ 217 (410)
T 1vyh_C 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIK 217 (410)
T ss_dssp CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS--EEEEEETTSEEE
T ss_pred CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEE
Confidence 456678999999999999999999999999999999999999999888889999999999998765 456677899999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCC----------
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPE---------- 159 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~---------- 159 (335)
+||+.++.++..+.+|...|.++.++|++.+|++|+.|++|++||++++.+...+ .+...+..+.|+|+
T Consensus 218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence 9999999999999999999999999999999999999999999999988876554 33445566788875
Q ss_pred ----------CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 160 ----------GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 160 ----------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
+.++++|+.|++|++||+++.. .. .....+...+.+++|+|++++|++++.|+.|++||+.++++
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~---~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CL---MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTE--EE---EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCc--eE---EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 6789999999999999997632 22 22234556788999999999999999999999999999998
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+..+.+ |...|.+++|+|++++|++|+.||+|++|+.
T Consensus 373 ~~~~~~---h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 373 MKTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEC---CSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEcC---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 888765 4556889999999999999999999999985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=296.71 Aligned_cols=296 Identities=21% Similarity=0.320 Sum_probs=228.3
Q ss_pred cccceeeecc------CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-----------ceeeeeccc---------
Q psy16316 10 SYKVAKLFRE------NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-----------NKRTVFSKK--------- 63 (335)
Q Consensus 10 ~~~~~~~~~~------h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-----------~~~~~~~~~--------- 63 (335)
.++..+.|.. |.+.|++++|+|+|.+||+|+.||+|+|||++++. ....+.+|.
T Consensus 11 ~w~~~q~~~~~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 90 (447)
T 3dw8_B 11 QWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90 (447)
T ss_dssp CCEEEECCSCSSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTE
T ss_pred eEEEEEecccccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccc
Confidence 3455555554 68999999999999999999999999999998876 355666776
Q ss_pred ---ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE---------------------------------------e
Q psy16316 64 ---YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI---------------------------------------R 101 (335)
Q Consensus 64 ---~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---------------------------------------~ 101 (335)
..|..++|.++.....+++++.|++|++|++.++... +
T Consensus 91 ~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp EECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred cccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 7799999999875445566678999999999775432 1
Q ss_pred e-ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-CCceeEE--------EecCCcceEEECCCC-CEEEEEEcCC
Q psy16316 102 Y-FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-PNCQGIM--------HVSGSRPIAAFDPEG-LIFGVGVNSD 170 (335)
Q Consensus 102 ~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~d~ 170 (335)
. ..+|...|.+++|+|++++|++| .|++|++||+++ ..+...+ .+...+..+.|+|++ .++++|+.|+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 2 46899999999999999999999 799999999984 3333322 223445678999998 9999999999
Q ss_pred eEEEEEccCCCCCc--eeeEEeccCCC------------ccceEEEEccCCCEEEEEeCCCeEEEEECCC-Ceeeeeecc
Q psy16316 171 TIKLYDVRSFDKGP--FSNFKFAAEKE------------CDWTGIKFSADGKYILISTNGSIIRTFDAYN-GQCLQTLAG 235 (335)
Q Consensus 171 ~v~iwd~~~~~~~~--~~~~~~~~~~~------------~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~ 235 (335)
+|++||++...... ...+ ..+. ..+.+++|+|++++|++++. +.|++||+++ ++++..+.+
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred eEEEEECcCCccccceeeEe---ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence 99999998743210 1112 1222 26789999999999999998 9999999997 777777776
Q ss_pred cccCCC------------CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC------------------------
Q psy16316 236 FLNNKG------------CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD------------------------ 279 (335)
Q Consensus 236 ~~~~~~------------~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~------------------------ 279 (335)
|..... .+..++|+|++++|++|+.||.|++||+.++.......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 543221 13348999999999999999999999998876553221
Q ss_pred -------CCCCCCeEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 280 -------ADHPSPVQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 280 -------~~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
..+...|..++|||+++++|+++. .+.+|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 134567899999999999998875 5777753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=285.04 Aligned_cols=249 Identities=23% Similarity=0.363 Sum_probs=212.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
.+....+..|...|.+++|+|+|++|++|+.|+++++||+.+.+ ....+.+|...+..+.|.++.. +++++.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d 163 (340)
T 1got_B 87 TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGD 163 (340)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETT
T ss_pred CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECC
Confidence 44567788999999999999999999999999999999998764 3345667888899999987653 4566779
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (335)
++|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||++++.+...+. +...+..++|+|++.++++
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988766553 3445677899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
|+.|++|++||++... ....+. .......+.+++|+|++++|++++.|+.|++||+.+++....+.+ |...|.+
T Consensus 244 ~s~d~~v~iwd~~~~~--~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~ 317 (340)
T 1got_B 244 GSDDATCRLFDLRADQ--ELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSC 317 (340)
T ss_dssp EETTSCEEEEETTTTE--EEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEE
T ss_pred EcCCCcEEEEECCCCc--EEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec---CCCcEEE
Confidence 9999999999998632 111111 122334678999999999999999999999999999988887765 4567889
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
++|+|++++||+|+.|+.|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=279.57 Aligned_cols=255 Identities=17% Similarity=0.178 Sum_probs=204.0
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC--cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG--TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+.+|++.|++++|+|+|++||||+.|++|+|||++.+ +....+.+|...|..++|.++....++++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 467899999999999999999999999999999999754 556778889999999999865444577888899999999
Q ss_pred EcCCCc--eEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCce--eEE-EecCCcceEEECCC------
Q psy16316 93 SLHDNK--YIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQ--GIM-HVSGSRPIAAFDPE------ 159 (335)
Q Consensus 93 ~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~--~~~-~~~~~~~~~~~~~~------ 159 (335)
|+.+++ .+..+.+|...|.+++|+|+ +++|++|+.|++|++||++++... ..+ .+...+..+.|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 56678899999999999997 789999999999999999876422 111 23334556788886
Q ss_pred -------CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC---CEEEEEeCCCeEEEEECCCCee
Q psy16316 160 -------GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG---KYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 160 -------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
+.++++|+.|++|++||++.... ..........+...+.+++|+|++ .+|++++.|+.|++||+.+...
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 57999999999999999986321 111222234566678999999995 8999999999999999887431
Q ss_pred --eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 230 --LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 230 --~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
...+.....+...+.+++|+|++++||+++.|+.|++|+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 11121112345678899999999999999999999999975
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=286.85 Aligned_cols=292 Identities=15% Similarity=0.259 Sum_probs=229.6
Q ss_pred ceeeeccCCccEEEEEECCCCC-EEEEecC---CCeEEEEEccCCcceeee-ecccccceEEEEecCC-CeeEEeecCCC
Q psy16316 13 VAKLFRENTDKITSIDYSADGL-LLISCSE---DDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAK-QAAIHASTKID 86 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~-~lasgs~---Dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d 86 (335)
+.+.+++|.+.|++++|+|++. ++++|+. ||+|+|||+++++..... ..+...+..++|.++. +...+++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4456789999999999999996 5567776 999999999988765443 4677889999999874 13455666789
Q ss_pred CeEEEEEcCCCc-eEeeecCCCCCeEEEE------ECCCCCEEEEeeCCCcEEEeecCCCC-ceeEEEe-cC----Ccce
Q psy16316 87 DTVRYLSLHDNK-YIRYFPGHTKKVNSLC------LSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHV-SG----SRPI 153 (335)
Q Consensus 87 ~~i~~~~~~~~~-~~~~~~~H~~~V~~~~------~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~-~~----~~~~ 153 (335)
+.+++||+.+++ .+..+.+|...|.+++ |+|++++|++++.|+.|++||++++. ....+.. .+ ....
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 999999999887 8889999999999995 46789999999999999999999876 3443322 11 2333
Q ss_pred EE----ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc---CCCEEEEEeCCCeEEEEECCC
Q psy16316 154 AA----FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA---DGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 154 ~~----~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+. ++|++.++++++.|+.|++||++.... .....+...+.+++|+| ++.++++++.++.|++||+++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEE------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCce------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 44 679999999999999999999986321 11123345678999999 999999999999999999988
Q ss_pred Ceeeeeec--ccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCe-------------------eEEEeCCCCCC
Q psy16316 227 GQCLQTLA--GFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGF-------------------KVCVLDADHPS 284 (335)
Q Consensus 227 ~~~~~~~~--~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~-------------------~~~~~~~~h~~ 284 (335)
++....+. ....+...+.+++|+|+++ +|++|+.||.|++||+..+. .+..+ ..|.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~ 322 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQ 322 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSS
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCC
Confidence 76655443 1224567789999999998 89999999999999987532 33334 45899
Q ss_pred CeEEEEeCCCCcEEE-eee--ceeEEeccc
Q psy16316 285 PVQTIQFNPKFNMMA-SAC--TNLAFWIPT 311 (335)
Q Consensus 285 ~v~~v~~sp~~~~~~-s~~--~~~~~w~~~ 311 (335)
+|++++|+|++++++ +++ +.+++|..+
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999999888 675 679999764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=275.04 Aligned_cols=279 Identities=12% Similarity=0.186 Sum_probs=231.9
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-----cccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-----SKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..+|.+.|++++|+|+|++|++++ ||+|++||+++++....+. .+...+..++|.+++. .+++++.|+.+++
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSI 123 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEE
Confidence 348999999999999999999999 9999999998876433322 5677899999998765 4455567999999
Q ss_pred EEcCCCc--eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 92 LSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 92 ~~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
||+.+++ ....+.+|...|.+++|+|+++.|++++.|+.|++||+++++....+. +......+.++|++.++++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9999876 667788999999999999999999999999999999999887665553 3445667889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||++... ....+ .....+.+++|+|+++++++++.++.|++||+.+++... + ..+...+.+++|
T Consensus 204 dg~i~~~d~~~~~--~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~v~~~~~ 273 (337)
T 1gxr_A 204 DNTVRSWDLREGR--QLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L---HLHESCVLSLKF 273 (337)
T ss_dssp TSEEEEEETTTTE--EEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E---CCCSSCEEEEEE
T ss_pred CCcEEEEECCCCc--eEeee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E---cCCccceeEEEE
Confidence 9999999998632 12221 234567889999999999999999999999999886542 3 235567889999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+|++++|++++.||.|++||+.++...... .|..+|.+++|+|+++++++++ +.+++|.+
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999988776543 4788999999999999999886 56888864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=285.49 Aligned_cols=284 Identities=10% Similarity=0.081 Sum_probs=212.3
Q ss_pred CccEEEEEECCCCCEEEEecCCC-------eEEEEEccCCcce----------eeeecccccceEEEEecCCCeeE----
Q psy16316 21 TDKITSIDYSADGLLLISCSEDD-------QIVIYDCELGTNK----------RTVFSKKYGVDLIRFTHAKQAAI---- 79 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg-------~i~lwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---- 79 (335)
.-+|++++|+|||++||+||.|. .|++|+++.+... ..+..+...+.++++.. ...+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEEC
Confidence 35799999999999999997644 5999998765421 12233444555555543 2222
Q ss_pred -----EeecCCCCeEEEEEcCCCceE----eee-----cCCCCCeEEEEECCCCCEEE--EeeCCCcEEEeecCCCCcee
Q psy16316 80 -----HASTKIDDTVRYLSLHDNKYI----RYF-----PGHTKKVNSLCLSPIDDTFI--SGSYDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 80 -----~~~~~~d~~i~~~~~~~~~~~----~~~-----~~H~~~V~~~~~~~~~~~l~--s~s~D~~i~vWd~~~~~~~~ 143 (335)
+.+++.|+.+|+|++...... ... ..+...+.+++|+|+|++|+ +++.|++|++||+.++++..
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 224556899999998764321 111 23445689999999999876 45589999999999988887
Q ss_pred EEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC----eE
Q psy16316 144 IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS----II 219 (335)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~----~i 219 (335)
.+.+.+.+..++|+|+|+++++++.++ +.+|+..... .........+...+.+++|+|+++++++++.++ .+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~---~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS---CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC---EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEecccee-EEEEEeccCc---ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 777777778899999999999998654 5566655422 111222334556688999999999999988766 68
Q ss_pred EEEECCCCeeee-eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 220 RTFDAYNGQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 220 ~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
++|++....... .......+...|.+++|+|||++||+|+.|++|+|||+.++..+..+..+|.++|++|+|||+|++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 899987765422 1222334566788999999999999999999999999999988877667899999999999999999
Q ss_pred Eeee--ceeEEecc
Q psy16316 299 ASAC--TNLAFWIP 310 (335)
Q Consensus 299 ~s~~--~~~~~w~~ 310 (335)
|||+ ++|++|..
T Consensus 328 aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 328 ASVSAANTIHIIKL 341 (365)
T ss_dssp EEEETTSEEEEEEC
T ss_pred EEEeCCCeEEEEEc
Confidence 9997 67999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=274.52 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=234.5
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
..+++.+.|++|.+.|+++.| |++.+|++|+.||+|++||++++.....+..+...+..++|.+++. .+++++.|+.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE--LLLFGGKDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT--EEEEEETTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC--EEEEecCCCe
Confidence 467888999999999999999 9999999999999999999999988888888899999999998765 4555667999
Q ss_pred EEEEEcCCC---ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECC-CCCEE
Q psy16316 89 VRYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDP-EGLIF 163 (335)
Q Consensus 89 i~~~~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 163 (335)
+++|++... +.+..+.+|...|.+++| +++.|++++.|+.|++|| .+.....+ .+......+.+.| ++.++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 999998654 567788999999999999 567999999999999999 33333333 2333344455555 89999
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
++++.|+.+++||... .. ......+...+.+++|+|++. +++++.++.|++||+++++.+..+.. +...+
T Consensus 159 ~~~~~d~~i~i~d~~~----~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i 228 (313)
T 3odt_A 159 LTASADKTIKLWQNDK----VI--KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG---HESFV 228 (313)
T ss_dssp EEEETTSCEEEEETTE----EE--EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC---CSSCE
T ss_pred EEEECCCCEEEEecCc----eE--EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc---CCceE
Confidence 9999999999999432 11 122233556788999999998 88999999999999999988887765 45668
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee-eceeEEecccccc
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA-CTNLAFWIPTYLS 314 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~~~~~ 314 (335)
.+++|+|++ .|++|+.||.|++||+.++.....+. .|..+|.+++|+|++.+++.+ ++.+++|.+...+
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 899999999 68999999999999999988777775 588899999999999866544 3679999865443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=294.13 Aligned_cols=284 Identities=25% Similarity=0.409 Sum_probs=235.4
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.+.+|...|.++.|+|+|++|++++.|++|++||.+ ++....+.+|...+..++|+++.. .+++++.|++++
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~~~d~~i~ 328 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVK 328 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCC--EEEEEeCCCeEE
Confidence 45667889999999999999999999999999999999964 556667778888999999988765 455666799999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcC
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
+||+... .+..+.+|...|.+++|+|+++.|++++.|+.|++||.. ++....+ .+...+..++|+|+++++++++.|
T Consensus 329 ~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 329 LWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp EEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9997654 567788999999999999999999999999999999964 3443333 334556678999999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
+.|++||... ... .....+...+.+++|+|++++|++++.|+.|++||. +++.+..+.+ +...+.+++|+
T Consensus 407 ~~v~~~~~~~---~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~---~~~~v~~~~~s 476 (577)
T 2ymu_A 407 KTVKLWNRNG---QLL---QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFS 476 (577)
T ss_dssp SEEEEECTTC---CEE---EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC---CSSCEEEEEEC
T ss_pred CEEEEEeCCC---CEE---EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC---CCCCEEEEEEc
Confidence 9999999642 122 222345567889999999999999999999999996 4556666655 45668899999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
|++++||+++.|+.|++||. ++.....+. +|..+|++++|+|++++||+++ +.+++|..+
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 99999999999999999996 566666664 6999999999999999999986 569999753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=280.71 Aligned_cols=289 Identities=16% Similarity=0.258 Sum_probs=230.7
Q ss_pred eeccCCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcceeeeec-----ccccceEEEEecCCC--eeEEeecC
Q psy16316 16 LFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTNKRTVFS-----KKYGVDLIRFTHAKQ--AAIHASTK 84 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~ 84 (335)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++....+.. +...+..++|+++.. ..++++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44589999999999984 45566666677999999998877666554 335689999998855 56777888
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPE 159 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (335)
.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++....+ .+...+..+.|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 899999999999999999999999999999999 8999999999999999999988776655 24445667889999
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCce-----------------------eeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPF-----------------------SNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
+.++++++.|+.|++||++....... ........+...+.+++|+ ++++++++.+
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 99999999999999999875211000 0011111245567889998 7799999999
Q ss_pred CeEEEEECCCCee--------------eeeecccccCCCCceEEEEcCC--CcEEEEEeCCCcEEEEECCCCe----eEE
Q psy16316 217 SIIRTFDAYNGQC--------------LQTLAGFLNNKGCPLEASFTPD--SKYVISGSTDGRIHIWNAEKGF----KVC 276 (335)
Q Consensus 217 ~~i~i~d~~~~~~--------------~~~~~~~~~~~~~v~~~~~sp~--~~~l~tgs~dg~v~iwd~~~~~----~~~ 276 (335)
+.|++||+.+++. +..+. .+...+.+++|+|+ +++|++|+.||.|++||+.++. ...
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred CEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 9999999987644 33333 34556778999999 9999999999999999998764 333
Q ss_pred EeCCCC--CCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 277 VLDADH--PSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 277 ~~~~~h--~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
.+. .| ..+|++++|+|++++|++++ +.+++|.+
T Consensus 328 ~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 328 TLT-HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEc-ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 443 35 78999999999999999997 46888864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=282.13 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=235.4
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.++.|.++|++++|+|+|++||+|+.|++|++||+++++ ....+..|...+..++|.+++. .+++++.|+.+++|
T Consensus 2 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVW 79 (372)
T ss_dssp CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred ceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEE
Confidence 3567799999999999999999999999999999999987 7777888889999999998665 44556679999999
Q ss_pred EcCCCceEe--eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE---E--EecCCcceEEECCCCCEEEE
Q psy16316 93 SLHDNKYIR--YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI---M--HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 93 ~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~ 165 (335)
|+.+++... .+.+|...|.+++|+|++++|++++.|+.|++||++.+..... . .+...+..+.|+|++.++++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 998887544 3478999999999999999999999999999999988764221 1 12344567889999999999
Q ss_pred EEcCCeEEEEEccCCCC-------------CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 166 GVNSDTIKLYDVRSFDK-------------GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
++.|+.+++||++.... ...........+...+.+++|+|++++|++++.|+.|++||+++++++..
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 99999999999752110 00111222234556788999999999999999999999999999988887
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC--Cee--------------------------------E---
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK--GFK--------------------------------V--- 275 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~--~~~--------------------------------~--- 275 (335)
+.. +...+.+++|+|++++|++| .|+.|++|++.+ +.- .
T Consensus 240 ~~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1k8k_C 240 LAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 315 (372)
T ss_dssp EEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred Ecc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence 765 34568899999999999888 899999999877 420 0
Q ss_pred ---EEeCCCCCCCeEEEEeC-CCC---cEEEeee--ceeEEecccc
Q psy16316 276 ---CVLDADHPSPVQTIQFN-PKF---NMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 276 ---~~~~~~h~~~v~~v~~s-p~~---~~~~s~~--~~~~~w~~~~ 312 (335)
..+..+|.++|++++|+ +++ .++++++ +.+++|..+.
T Consensus 316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 22334799999999976 666 8999997 5699998643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=279.26 Aligned_cols=244 Identities=14% Similarity=0.213 Sum_probs=200.2
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee----eecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT----VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
...|...|.+++|+|++ .|++|+.||+|+|||+++++.... ..+|...|..++|++++. .+++++.|++|++|
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVW 154 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 34567789999999986 688999999999999999876543 346788899999998765 56677789999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECC-CCCEEEEEE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDP-EGLIFGVGV 167 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 167 (335)
|+.++++++.+.+|.+.|++++|+|++ .+|+||+.|++|++||++++++...+. .......++++| ++.++++|+
T Consensus 155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 999999999999999999999999987 478999999999999999988765442 223345678888 567899999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.|++|++||+++.+ ....+ ..+...+.+++|+|++ ++|++++.|+.|++||+.++++++ +. .|...|.++
T Consensus 235 ~dg~v~~wd~~~~~--~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~---~H~~~V~~v 305 (344)
T 4gqb_B 235 ENGTVSLVDTKSTS--CVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ---AHRDFVRDA 305 (344)
T ss_dssp TTSEEEEEESCC----CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC---CCSSCEEEE
T ss_pred cCCcEEEEECCCCc--EEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec---CCCCCEEEE
Confidence 99999999998643 22222 3455678999999998 578999999999999999987654 33 356778999
Q ss_pred EEcCCCc-EEEEEeCCCcEEEEECCCC
Q psy16316 247 SFTPDSK-YVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 247 ~~sp~~~-~l~tgs~dg~v~iwd~~~~ 272 (335)
+|+|+++ +|++||.|++|++|++.+.
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999986 6789999999999998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=275.43 Aligned_cols=249 Identities=17% Similarity=0.288 Sum_probs=207.4
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.|++|.+.|.++.|+|+|++|+|||.|++|+|||+++++....+.+|...+..++|.++.. .+++++.|++|++|
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vw 134 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC--EEEEEETTSCEEEE
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999988654 56677789999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCC------CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPI------DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~------~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (335)
|+. ++.+..+.+|...|.++.++|. +..+++++.|++|++||+++.+....+ .+...+..++++|++.++++
T Consensus 135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence 996 4567888999999999999985 348999999999999999987655443 23455667899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc-----cCC
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL-----NNK 240 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~~ 240 (335)
|+.|++|++||++... ....+. ....+.+++|+|++.++++++.+ .+++|++..+.....+.... .+.
T Consensus 214 ~~~dg~i~iwd~~~~~--~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 214 AGKDGEIMLWNLAAKK--AMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp EETTCEEEEEETTTTE--EEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred EeCCCeEEEEECCCCc--EEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcC
Confidence 9999999999997632 222222 23467899999999999888755 59999998877666554321 234
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
..+.+++|+|||++|++|+.|+.|++||+.+
T Consensus 287 ~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 4577899999999999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=288.39 Aligned_cols=292 Identities=12% Similarity=0.171 Sum_probs=228.6
Q ss_pred ccceeee-ccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccC---Ccce--eeeecccccceEEEEecCCCeeEEeec
Q psy16316 11 YKVAKLF-RENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCEL---GTNK--RTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 11 ~~~~~~~-~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.++...+ ++|.+.|++++|+| +|.+||||+.||+|+|||+.+ +... .....|...+..++|.++.. .++++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD--AFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS--EEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC--EEEEE
Confidence 3455677 89999999999999 999999999999999999977 4322 12235788899999997554 55667
Q ss_pred CCCCeEEEEEcC---CCceEeeecC------------CCCCeEEEE--ECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 84 KIDDTVRYLSLH---DNKYIRYFPG------------HTKKVNSLC--LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 84 ~~d~~i~~~~~~---~~~~~~~~~~------------H~~~V~~~~--~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
+.|+.|++||+. .++.++.+.+ +...+.++. +++++++|++|+.|+.|++||++++++...+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 789999999995 5555554443 445566666 55788999999999999999999988877664
Q ss_pred ---ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEc----cCCCEEEEEeCCCeE
Q psy16316 147 ---VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS----ADGKYILISTNGSII 219 (335)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~~~~~~~i 219 (335)
+...+..++|+|++.++++|+.|++|++||++.. .....+ ...+...+.+++++ |++.+|++++.|+.|
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~--~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--VLIRSW--SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEEEE--BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--cEEEEE--ecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 3456777899999999999999999999999862 222221 22344567888554 568899999999999
Q ss_pred EEEECCCCeeeeeeccccc-----------------------CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 220 RTFDAYNGQCLQTLAGFLN-----------------------NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~-----------------------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
++||++++++...+.++.. +...+.+++|+ ++++|++|+.|+.|++||+.++....
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 9999999998887765421 34457788999 77999999999999999998876554
Q ss_pred EeCC------------------------------------CCCCCeEEEEeCCC--CcEEEeee--ceeEEec
Q psy16316 277 VLDA------------------------------------DHPSPVQTIQFNPK--FNMMASAC--TNLAFWI 309 (335)
Q Consensus 277 ~~~~------------------------------------~h~~~v~~v~~sp~--~~~~~s~~--~~~~~w~ 309 (335)
.+.. .|.+.|++++|+|+ +.++++|+ +.|++|.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4432 28999999999988 78999997 5688884
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=276.92 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=229.0
Q ss_pred hcccceeeeccCCccEEEEEECCC---CCEEEEecCCCeEEEEEccC-Ccce-eeeecccccceEEEEecCCCeeEEeec
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSAD---GLLLISCSEDDQIVIYDCEL-GTNK-RTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~---g~~lasgs~Dg~i~lwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+++..+.+++|.+.|++++|+|+ |.+|++|+.||+|+|||+++ +... ..+..|...+..++|++++. .++++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~ 104 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--KVFTA 104 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS--EEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC--EEEEE
Confidence 467778889999999999999999 69999999999999999997 4444 56677889999999998655 45566
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEE--CCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL--SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~--~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
+.|+.|++||+.+++.+. +.+|...|.+++| +|++++|++++.|+.|++||+++++....+.... ....+.+...
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~ 181 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIYP 181 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEETT
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEecCC
Confidence 679999999999988776 5579999999999 8999999999999999999999988776665444 3344444556
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE----EEEEeCCCeEEEEECCCC---eeeeeec
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY----ILISTNGSIIRTFDAYNG---QCLQTLA 234 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~~~~~~~i~i~d~~~~---~~~~~~~ 234 (335)
.+++++.++.+.+||++.... .. .............+++.++... +++++.++.|++||++.. +....+.
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPS-EF--RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCE-EE--EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred eeEEEeCCCcEEEEEeccccc-hh--hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 888899999999999975321 11 1111222233455666655544 999999999999999887 3444554
Q ss_pred ccccC---------CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 235 GFLNN---------KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 235 ~~~~~---------~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
.+... ...+.+++|+|++++|++|+.||.|++||+.++..+..+. .|..+|++++|+|++.++++++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEECC
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEecc
Confidence 43321 1258899999999999999999999999999998887775 699999999999999999999754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=285.25 Aligned_cols=285 Identities=13% Similarity=0.183 Sum_probs=228.2
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.+..| +.+....|+|+|++||+|+.||+|++||+++++....+..|...+..++|++++. .+++++.|+.|++||+.
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETT
T ss_pred EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCC
Confidence 34555 5566668899999999999999999999998888777678889999999998765 55667789999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------------------------CC
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------------------------GS 150 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------------------------~~ 150 (335)
+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+... ..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 99999999999999999999999999999999999999999988766554321 22
Q ss_pred cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee
Q psy16316 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~ 229 (335)
...+.|+|++.++++++.|+.|++||++... . .......+...+.+++|+|++. +|++++.|+.|++||+++++.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--Q--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCC--E--EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCc--e--eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 2335678999999999999999999998632 1 2222334556789999999999 999999999999999998754
Q ss_pred -eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe---------eEEEeCCCCCCCeEEEEeCCCCc---
Q psy16316 230 -LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF---------KVCVLDADHPSPVQTIQFNPKFN--- 296 (335)
Q Consensus 230 -~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~---------~~~~~~~~h~~~v~~v~~sp~~~--- 296 (335)
+..+..+ +...+..+ +.|++++|++++.|+.|++|++.... ....+ ..|.+.|.+++|+|+++
T Consensus 326 ~~~~~~~~--~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~g 401 (420)
T 3vl1_A 326 PVGEFLIN--EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDDESNG 401 (420)
T ss_dssp CSEEEEES--TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCSSSSC
T ss_pred chhhhhcc--CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE-ccCCcceEEEEEccCCCCcc
Confidence 5555543 23344455 56688999999999999999987631 11122 45888999999999998
Q ss_pred -EEEeee-ceeEEeccc
Q psy16316 297 -MMASAC-TNLAFWIPT 311 (335)
Q Consensus 297 -~~~s~~-~~~~~w~~~ 311 (335)
++++|+ +.+.+|..+
T Consensus 402 ~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEEETTTEEEEEESC
T ss_pred eEEEEcCCceEEEEecc
Confidence 666664 568889753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=280.02 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=194.5
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+|++.|++++|+|+|++|||||.|++|+|||++++. ....+.+|...|..++|.++.....+++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4567999999999999999999999999999999998875 34567789999999999765334567778889999999
Q ss_pred EcCCC--ceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCC-----
Q psy16316 93 SLHDN--KYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPE----- 159 (335)
Q Consensus 93 ~~~~~--~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~----- 159 (335)
|+.++ .....+.+|...|++++|+|+ +.+|++|+.|++|++||++.+...... .+......+.|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99887 456778899999999999998 789999999999999999875321111 11223445677776
Q ss_pred ------------CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC----CEEEEEeCCCeEEEEE
Q psy16316 160 ------------GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG----KYILISTNGSIIRTFD 223 (335)
Q Consensus 160 ------------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~~~~i~i~d 223 (335)
+.++++|+.|++|++||++.. ...........+...+.+++|+|++ .+|++++.|++|++|+
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED--GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTT--SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCC--CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 468999999999999998642 1122223334566678999999987 8899999999999999
Q ss_pred CCCCe----eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 224 AYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 224 ~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+.+.. ....+.. +...+.+++|+|++++||+|+.|+.|++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHK---FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSTTCCCCBCCEEEE---CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccCccccchhhhhhhc---CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 87631 1122322 45678899999999999999999999999975
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=303.08 Aligned_cols=291 Identities=20% Similarity=0.298 Sum_probs=246.6
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+++.+.|.+|.+.|++++|+|+|++||+|+.||+|+|||+++++....+..|...+..++|++++.. +++++.|+.|
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i 79 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW--IIVGSDDFRI 79 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE--EEEEETTSEE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE--EEEEeCCCeE
Confidence 35678899999999999999999999999999999999999999998888889999999999997654 4555679999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEE-EecCCcceEEECC-CCCEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIM-HVSGSRPIAAFDP-EGLIFGVG 166 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 166 (335)
++||+.+++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||+.++. ....+ .+...+..+.|+| ++..++++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999998763 33333 2344566788999 88999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc--CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+.|++|++||++.... .... .......+..++|+| ++.++++++.++.|++||+.++++...+.+ +...+.
T Consensus 160 ~~dg~v~vwd~~~~~~--~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~ 232 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTP--NFTL--TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVS 232 (814)
T ss_dssp ETTSEEEEEETTCSSC--SEEE--ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC---CSSCEE
T ss_pred eCCCeEEEEECCCCcc--eeEE--ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC---CCCCEE
Confidence 9999999999976332 2222 223335677899999 999999999999999999999998887765 445678
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc--EEEeee-ceeEEecc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN--MMASAC-TNLAFWIP 310 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~~~s~~-~~~~~w~~ 310 (335)
+++|+|++++|++|+.||.|++||..++.....+. .|..++++++|+|++. +++++. ..+.+|..
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 89999999999999999999999999888777774 5788999999999986 466664 45666653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=276.65 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=230.1
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc---ceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT---NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+...+|.+.|++++|+|+|.+|++|+.||+|++||++++. .......+...+..++|.+++.. .+++++.|+.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~ 82 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEIL 82 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEE
Confidence 34456999999999999999999999999999999999877 24455678888999999987541 345566799999
Q ss_pred EEEc-CCCceEeeecC--CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC---------CCceeEEEecCCcceEEECC
Q psy16316 91 YLSL-HDNKYIRYFPG--HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS---------PNCQGIMHVSGSRPIAAFDP 158 (335)
Q Consensus 91 ~~~~-~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~---------~~~~~~~~~~~~~~~~~~~~ 158 (335)
+||+ .+++. ..+.+ |...|.+++|+| ++.|++++.|+.|++||+++ +++...+........+.++|
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence 9999 77754 67888 999999999999 99999999999999999987 65554444455566778888
Q ss_pred CCCEEEEEEcCCeEEEEEccC-CCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCC------eee
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRS-FDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNG------QCL 230 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~------~~~ 230 (335)
++ +++++.++.|++||++. .... ... ....+...+.+++|+| +++++++++.++.|++|+.... +..
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~-~~~--~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDN-GTI--EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCC-CEE--EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred Cc--EEEEeCCCeEEEEECCcccccc-cee--eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 77 88899999999999986 3321 111 1223445678999999 9999999999999999999876 666
Q ss_pred eeeccccc------CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 231 QTLAGFLN------NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 231 ~~~~~~~~------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
..+..+.. +...+.+++|+|++++|++|+.||.|++||+.++..+..+...|.++|++++ |++.++++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 66655432 2347889999999999999999999999999999888777542399999999 999999999865
Q ss_pred e
Q psy16316 305 L 305 (335)
Q Consensus 305 ~ 305 (335)
.
T Consensus 314 g 314 (342)
T 1yfq_A 314 D 314 (342)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=280.64 Aligned_cols=282 Identities=19% Similarity=0.279 Sum_probs=234.8
Q ss_pred ceeeeccCCccE-EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRENTDKI-TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~h~~~V-~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
....+++|.+.| .++.| ++.+|++|+.||+|++||+.+++....+.+|...+..++|.++. .+++++.|++|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 456899999885 66665 67899999999999999999999999988999999999998765 6677888999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEEC--CCCCEEEEeeCCCcEEEeecCCCCceeE----------------------EEe
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLS--PIDDTFISGSYDKTVRLWDLRSPNCQGI----------------------MHV 147 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~--~~~~~l~s~s~D~~i~vWd~~~~~~~~~----------------------~~~ 147 (335)
||+.+++.+..+.+|...|.+++|+ ++++.+++|+.|++|++||++++..... ...
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998 5678999999999999999987654321 112
Q ss_pred cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy16316 148 SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG 227 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~ 227 (335)
.+...+..+++++.++++++.|+.|++||+++.. . ......+...+.+++|+|+++++++++.|+.|++||++++
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--C---LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--E---EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--E---EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 2333455678889999999999999999997532 1 2222345567889999999999999999999999999999
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeE
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLA 306 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~ 306 (335)
+++..+.+ +...+.+++|+ +++|++|+.||.|++||+.++.+..... |...+..++|+|++.++++++ +.++
T Consensus 343 ~~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~dg~i~ 415 (464)
T 3v7d_B 343 ELMYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGSENQFN 415 (464)
T ss_dssp EEEEEECC---CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEETTEEE
T ss_pred cEEEEEeC---CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEecCCeEE
Confidence 99888866 44567788887 5799999999999999999887665553 667888899999999999886 5799
Q ss_pred Eeccc
Q psy16316 307 FWIPT 311 (335)
Q Consensus 307 ~w~~~ 311 (335)
+|...
T Consensus 416 iwd~~ 420 (464)
T 3v7d_B 416 IYNLR 420 (464)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99763
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=272.75 Aligned_cols=250 Identities=21% Similarity=0.360 Sum_probs=209.9
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC------cceeeeecccccceEEEEecCCCeeEEeecC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
.+..+.+..|...|.+++|+|+|.+||+|+.|+++++|++... .....+..|...+..++|.++... +++++
T Consensus 96 ~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~t~s 173 (354)
T 2pbi_B 96 TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ--ILTAS 173 (354)
T ss_dssp CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE--EEEEE
T ss_pred CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCE--EEEEe
Confidence 3455678889999999999999999999999999999998654 234456678888999999987654 45666
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGL 161 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 161 (335)
.|++|++||+++++.+..+.+|...|.+++++|+ ++.|++|+.|++|++||++++++...+. +...+..++|+|++.
T Consensus 174 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence 7999999999999999999999999999999884 6899999999999999999988776553 344567789999999
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
++++|+.|++|++||++... ....+ ........+.+++|+|++.+|++++.|+.|++||+.+++.+..+.+ |..
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~--~~~~~-~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~---h~~ 327 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADR--EVAIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG---HEN 327 (354)
T ss_dssp EEEEEETTSCEEEEETTTTE--EEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC---CSS
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEE-cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC---CCC
Confidence 99999999999999998632 11111 1122234567899999999999999999999999999988877765 456
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.|.+++|+|++++|++|+.|++|++|+
T Consensus 328 ~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 788999999999999999999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=277.99 Aligned_cols=281 Identities=10% Similarity=0.102 Sum_probs=225.7
Q ss_pred ccCCccEEEEEECCCCC-EEEEecCCCeEEEEEc----cCCc------ceeeeec----------ccccceEEEEecCCC
Q psy16316 18 RENTDKITSIDYSADGL-LLISCSEDDQIVIYDC----ELGT------NKRTVFS----------KKYGVDLIRFTHAKQ 76 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~----~~~~------~~~~~~~----------~~~~~~~~~~~~~~~ 76 (335)
..|.+.|++++|+|+|+ +||+|+.||+|++||+ .+++ ....+.. +...+..++|++++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45669999999999999 9999999999999999 8877 3333333 456899999998655
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE----------
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---------- 146 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---------- 146 (335)
.+++++.|+.+++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+.
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 455666799999999 6778888999999999999999999999999999999999997655332110
Q ss_pred -----------------------------------------------ecCCcceEEECCCCCEEEEEEcCCeEEEEEccC
Q psy16316 147 -----------------------------------------------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 147 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 179 (335)
+...+..+.++|++.++++++.|+.|++||++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 112234567889999999999999999999986
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.. ....+ ..+...+.+++|+|++ ++++++.++.|++||+.+++.+..+.. +...+.+++|+|++++|++|+
T Consensus 279 ~~--~~~~~---~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 279 GN--SQNCF---YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV---DGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp BS--CSEEE---CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC---TTCCEEEEEECTTSSEEEEEE
T ss_pred Cc--cceEe---cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc---CCccEEEEEEcCCCCEEEEEE
Confidence 32 22222 2345577899999999 999999999999999999988877764 345688999999999999999
Q ss_pred CCCcEEEEECCCCe--------------------eEEEeCCCCCC--CeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 260 TDGRIHIWNAEKGF--------------------KVCVLDADHPS--PVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 260 ~dg~v~iwd~~~~~--------------------~~~~~~~~h~~--~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.||.|++||+.++. ....+. .|.. .|++++|+|++++|++++ +.+++|.++
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999998766 566664 4755 999999999999998886 568999753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=287.74 Aligned_cols=285 Identities=12% Similarity=0.186 Sum_probs=232.5
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccC----CcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL----GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.|...|++++|+|+|.+|++|+.||+|++||+.. .+....+..|...+..++|.++.. .++++++.|+.|++||+
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD-NVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST-TBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC-CEEEEEcCCCeEEEEEC
Confidence 5899999999999999999999999999999987 346667777889999999998732 24556678999999999
Q ss_pred CCCc------eEe---eecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEEe-------cCCcceEEEC
Q psy16316 95 HDNK------YIR---YFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFD 157 (335)
Q Consensus 95 ~~~~------~~~---~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~ 157 (335)
.+++ ... .+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++....+.. ...+..+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 8876 332 34789999999999999 78999999999999999998877665543 3456678899
Q ss_pred CCC-CEEEEEEcCC---eEEEEEccCCCCCceeeEEecc-CCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 158 PEG-LIFGVGVNSD---TIKLYDVRSFDKGPFSNFKFAA-EKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 158 ~~~-~~~~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
|++ .++++++.++ .|++||++.... +.. ... .+...+.+++|+| ++.+|++++.|+.|++||+.+++++.
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 299 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANT-PLQ---TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTS-CSB---CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCC-CcE---EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence 987 6899999998 999999986421 111 122 3556788999999 99999999999999999999998888
Q ss_pred eecccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEe--------------------------------
Q psy16316 232 TLAGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVL-------------------------------- 278 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~-------------------------------- 278 (335)
.+..| ...+.+++|+|++ .+|++++.|+.|++||+.+.......
T Consensus 300 ~~~~~---~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 300 QFPAR---GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEECS---SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred eecCC---CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 87654 4567789999999 89999999999999998765421110
Q ss_pred --CCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 279 --DADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 279 --~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+..|..++..++|+|+|+++++++ +.+++|.+.
T Consensus 377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 377 QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 011677888999999999999996 568999764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=266.32 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=208.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+..+.+.+|..+|.++.|+|++++|++|+.|++|++||+++++....+..|...+..++|.++.. .+++++.|++|+
T Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~ 122 (304)
T 2ynn_A 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVK 122 (304)
T ss_dssp TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEE
T ss_pred CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC--EEEEECCCCeEE
Confidence 345678899999999999999999999999999999999999999999999999999999998765 566777899999
Q ss_pred EEEcCCC-ceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECC--CCCEEE
Q psy16316 91 YLSLHDN-KYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDP--EGLIFG 164 (335)
Q Consensus 91 ~~~~~~~-~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~ 164 (335)
+||+.++ ...+.+.+|...|.+++|+| ++..|++|+.|++|++||+++.......... .....+.+.| ++.+++
T Consensus 123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 9999887 55678999999999999999 5689999999999999999877665444322 3344566665 778999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+|+.|++|++||+++.. .. .....+...+..++|+|++++|++++.|+.|++||+.++++.+.+.. +...+.
T Consensus 203 s~s~D~~i~iWd~~~~~--~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~---~~~~~~ 274 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKS--CV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV---GLERSW 274 (304)
T ss_dssp EEETTSEEEEEETTTTE--EE---EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---SSSSEE
T ss_pred EEcCCCeEEEEeCCCCc--cc---eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC---CCccEE
Confidence 99999999999998632 22 22234556788999999999999999999999999999998888765 345678
Q ss_pred EEEEcCCCc--EEEEEeCCCcEEEEECCC
Q psy16316 245 EASFTPDSK--YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 245 ~~~~sp~~~--~l~tgs~dg~v~iwd~~~ 271 (335)
+++|+|++. ++|+|+.|| +.+|++.+
T Consensus 275 ~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 275 CIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 899999875 688887666 88887754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=284.13 Aligned_cols=251 Identities=11% Similarity=0.118 Sum_probs=195.7
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC--cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG--TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+.++.|.++|++++|+|+|++||+|+.|++|+|||+.++ +....+..|...+..++|++++. .+++++.|+++++
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3456778899999999999999999999999999999988 66777788899999999998765 4556668999999
Q ss_pred EEcCCCc---eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc---eeEEE--ecCCcceEEECCCCCEE
Q psy16316 92 LSLHDNK---YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC---QGIMH--VSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 92 ~~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~ 163 (335)
||+.+++ ....+.+|...|.+++|+|++++|++|+.|+.|++||++++.. ...+. +...+..+.|+|++.++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 9999877 6777889999999999999999999999999999999998763 33332 34556678999999999
Q ss_pred EEEEcCCeEEEEEccCCCCC------------ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--
Q psy16316 164 GVGVNSDTIKLYDVRSFDKG------------PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC-- 229 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~-- 229 (335)
++++.|++|++||++..... +.........+...+.+++|+|++++|++++.|+.|++||+.++++
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 99999999999998632100 1111111115566789999999999999999999999999999876
Q ss_pred --eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 230 --LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 230 --~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+..+.+ +...+.+++|+|++++|++|+.|+.+ +|+..
T Consensus 242 ~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 242 RALITVKL---SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECCCEEC---SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeeEeecC---CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 444443 55678899999999999999877755 66554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=282.50 Aligned_cols=282 Identities=12% Similarity=0.168 Sum_probs=223.7
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 102 (335)
.+++++|+|+|++|++|+.||++++||+.+++....+..+ ..+....+++++. .+++++.|+.|++||+.+++....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcceeee
Confidence 3457999999999999999999999999887765554443 2233445555544 456667899999999999999999
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCC
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~ 181 (335)
+.+|...|.+++|+|++++|++|+.|++|++||++++++...+. +...+..+.|+|++.++++++.|++|++||+++..
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 99999999999999999999999999999999999888776553 45556778999999999999999999999998632
Q ss_pred CCceeeEEeccCC---------------------CccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCC
Q psy16316 182 KGPFSNFKFAAEK---------------------ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 182 ~~~~~~~~~~~~~---------------------~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
....+.....+ ...+.+++|+|++++|++++.++.|++||+++++....+.. .+.
T Consensus 215 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~ 290 (420)
T 3vl1_A 215 --TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS--KFT 290 (420)
T ss_dssp --EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--TTS
T ss_pred --eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--ccC
Confidence 22222211111 12344567789999999999999999999999887766643 345
Q ss_pred CCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCee-EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 241 GCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGFK-VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 241 ~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
..+.+++|+|+++ +|++|+.||.|++||+.++.+ ...+...|..+|..+.| |++.++++++ +.+++|.+..
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 6788999999999 999999999999999988743 44454457788988865 5778888885 5799998644
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=292.85 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=212.6
Q ss_pred CCccEEEEEECCCC---------CEEEE-------------------ecCCCeEEEEEccCCcce----eeeecccccce
Q psy16316 20 NTDKITSIDYSADG---------LLLIS-------------------CSEDDQIVIYDCELGTNK----RTVFSKKYGVD 67 (335)
Q Consensus 20 h~~~V~~v~~s~~g---------~~las-------------------gs~Dg~i~lwd~~~~~~~----~~~~~~~~~~~ 67 (335)
+.+.|.+++|+|++ ++||+ |+.|++|+|||+++++.. ..+..+...+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56778888888876 45554 668999999999887653 23445567799
Q ss_pred EEEEecC----CCeeEEeecCCCCeEEEEEcCCCce-----------EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEE
Q psy16316 68 LIRFTHA----KQAAIHASTKIDDTVRYLSLHDNKY-----------IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132 (335)
Q Consensus 68 ~~~~~~~----~~~~~~~~~~~d~~i~~~~~~~~~~-----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~ 132 (335)
.++|+|. +...++++++.|++|++||+..+.. ...+.+|...|++++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999986 2356788888999999999976532 2467899999999999986 4899999999999
Q ss_pred EeecCCCCcee-EE-EecCCcceE--EECCCC-CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC
Q psy16316 133 LWDLRSPNCQG-IM-HVSGSRPIA--AFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG 207 (335)
Q Consensus 133 vWd~~~~~~~~-~~-~~~~~~~~~--~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 207 (335)
+||++++.... .+ .+...+..+ .++|++ .++++|+.|++|++||++.... ...+... .....+.+++|+|++
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~-~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSR-FRGSNLVPVVYCPQI 367 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEE-CSCCSCCCEEEETTT
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--ccccccc-cccCcccceEeCCCc
Confidence 99998764432 22 233334444 568887 8999999999999999986321 1111111 111235679999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC-----e---------
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG-----F--------- 273 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~-----~--------- 273 (335)
..+++++.|++|++||++++.+...+.+ |...|.+++|+|++++|++|+.||+|++||.... .
T Consensus 368 ~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 368 YSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSL 444 (524)
T ss_dssp TEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCC
T ss_pred CeEEEeCCCCcEEEEECcccccceeeec---CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeee
Confidence 9999999999999999999988777765 5567899999999999999999999999985321 0
Q ss_pred eE------------------------------EEeCCCCCCCeEEEEeCCCCc---EEEeee--ceeEEecccccc
Q psy16316 274 KV------------------------------CVLDADHPSPVQTIQFNPKFN---MMASAC--TNLAFWIPTYLS 314 (335)
Q Consensus 274 ~~------------------------------~~~~~~h~~~v~~v~~sp~~~---~~~s~~--~~~~~w~~~~~~ 314 (335)
.+ ..+ .+|..+|++|+|||+++ .+|+|+ +.+++|.++.+-
T Consensus 445 ~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp EEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred EEEEeccCCCCCeEEccCCceecccccCCcceeee-cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 01 011 24888999999999965 888886 679999877654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=278.41 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=210.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-------ceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-------NKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+....+++|...|.+++|+|+|++||+|+.|+++++||+.+.. ....+.+|...+..+.|.++... .++++
T Consensus 98 ~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~ 176 (380)
T 3iz6_a 98 SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITG 176 (380)
T ss_dssp TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEE
T ss_pred CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEE
Confidence 34567889999999999999999999999999999999997542 23445677888888888876443 34567
Q ss_pred CCCCeEEEEEcCCCceEeee-----cCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCC-CCceeEE-EecCCcceEE
Q psy16316 84 KIDDTVRYLSLHDNKYIRYF-----PGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRS-PNCQGIM-HVSGSRPIAA 155 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~-----~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~-~~~~~~~-~~~~~~~~~~ 155 (335)
+.|++|++||+.+++.+..+ .+|...|.++++++ ++++|++|+.|++|++||++. ..+...+ .+.+.+..++
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK 256 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence 78999999999999988777 68999999999987 788999999999999999984 3444444 3455677889
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC----CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE----KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
|+|++.++++|+.|++|++||+++.. ....+..... ....+.+++|+|++++|++++.++.|++||+.+++...
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred EecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence 99999999999999999999998632 1221211111 11236789999999999999999999999999988877
Q ss_pred eeccc-ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 232 TLAGF-LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 232 ~~~~~-~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
.+... ..|...|.+++|+|++++|+|||.|++|++|++....
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 66432 3466778999999999999999999999999987543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=261.93 Aligned_cols=253 Identities=20% Similarity=0.347 Sum_probs=210.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+..+.+.+|...|.++.|+|+|++|++|+.|++|++||+++++....+..|...+..+.|.+++. .+++++.|+.++
T Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~ 132 (312)
T 4ery_A 55 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVR 132 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEE
T ss_pred cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEE
Confidence 345678899999999999999999999999999999999999999888888999999999988655 456677899999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++++...+.. ......+.++|++.++++++.
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 999999999999999999999999999999999999999999999998877655432 234456789999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||++... ....+.........+......+++.++++++.|+.|++||+.+++.+..+.+| ...+.+++|
T Consensus 213 d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~ 287 (312)
T 4ery_A 213 DNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH---TDVVISTAC 287 (312)
T ss_dssp TTEEEEEETTTTE--EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC---SSCEEEEEE
T ss_pred CCeEEEEECCCCc--EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc---CCcEEEEee
Confidence 9999999997632 12222111111111222334467889999999999999999999988887664 456889999
Q ss_pred cCCCcEEEEEe--CCCcEEEEECC
Q psy16316 249 TPDSKYVISGS--TDGRIHIWNAE 270 (335)
Q Consensus 249 sp~~~~l~tgs--~dg~v~iwd~~ 270 (335)
+|++++|++++ .|+.|++|+..
T Consensus 288 ~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCcCCceEEEEccCCccEEEecCC
Confidence 99999999997 69999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=280.91 Aligned_cols=285 Identities=15% Similarity=0.262 Sum_probs=228.8
Q ss_pred CccEEEEEECCCCC-EEEEe----------cCCCeEEEEEccCCcce--eeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 21 TDKITSIDYSADGL-LLISC----------SEDDQIVIYDCELGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 21 ~~~V~~v~~s~~g~-~lasg----------s~Dg~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
...|.+++|+|+|+ +||+| +.|++|+|||++++... .....+...+..++|++++. .+++++.|+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC--eEEEEccCC
Confidence 35688999999997 99999 89999999999987632 22235677899999988765 445566799
Q ss_pred eEEEEEcCC----CceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCC------ceeEE----EecCCcc
Q psy16316 88 TVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPN------CQGIM----HVSGSRP 152 (335)
Q Consensus 88 ~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~------~~~~~----~~~~~~~ 152 (335)
.+++|++.. .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||++++. ..... .+...+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4578889999999999999998 8999999999999999998876 22211 2344566
Q ss_pred eEEECCC-CCEEEEEEcCCeEEEEEccCCCCCceeeEEecc---CCCccceEEEEccCC-CEEEEEeCCC---eEEEEEC
Q psy16316 153 IAAFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA---EKECDWTGIKFSADG-KYILISTNGS---IIRTFDA 224 (335)
Q Consensus 153 ~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~-~~l~~~~~~~---~i~i~d~ 224 (335)
.+.|+|+ +.++++++.|+.|++||++... ....+.... .+...+.+++|+|++ .++++++.++ .|++||+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 7899998 7899999999999999998632 222222111 114568899999997 6889999998 9999999
Q ss_pred CCC-eeeeeecccccCCCCceEEEEcC-CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC-cEEEee
Q psy16316 225 YNG-QCLQTLAGFLNNKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-NMMASA 301 (335)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~~s~ 301 (335)
+++ +....+. ..+...+.+++|+| ++++|++++.|+.|++||+.++.....+. .|..+|.+++|+|++ .+++++
T Consensus 248 ~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 248 RNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEEE
Confidence 986 4444443 03556788999999 99999999999999999999988877775 589999999999999 799988
Q ss_pred e--ceeEEecccc
Q psy16316 302 C--TNLAFWIPTY 312 (335)
Q Consensus 302 ~--~~~~~w~~~~ 312 (335)
+ +.+++|.+..
T Consensus 325 ~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 325 SFDNKIEVQTLQN 337 (416)
T ss_dssp CSSSEEEEEESCC
T ss_pred ecCCcEEEEEccC
Confidence 6 5689997643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=267.45 Aligned_cols=258 Identities=16% Similarity=0.200 Sum_probs=202.1
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..+|.+.|++++|+|+|++||+|+.|++++|||...+. +...+.+|...|..++|++++. .+++++.|++|++||+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEV 134 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEEC
Confidence 36899999999999999999999999999999998764 4567778889999999998765 5667778999999999
Q ss_pred CCC---ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCCCCEEEEEEc
Q psy16316 95 HDN---KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 95 ~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
.++ .++..+.+|...|.+++|+|++++|++|+.|++|++||++.+...... .+...+..++|+|++.++++|+.
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 765 346678899999999999999999999999999999999876533222 23345567899999999999999
Q ss_pred CCeEEEEEccCCCCCc----------eeeE-EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee----eeee
Q psy16316 169 SDTIKLYDVRSFDKGP----------FSNF-KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC----LQTL 233 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~ 233 (335)
|++|++||........ .... .....+...+.+++|+|++..|++++.|+.|++|+...... ...+
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 9999999975322110 0001 11122455678999999999999999999999999865431 1111
Q ss_pred --cccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 234 --AGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 234 --~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
..+..|...|.+++|+|++ .+||+||.||+|++|+..+..+..
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1123466789999999997 599999999999999998776544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=271.59 Aligned_cols=260 Identities=17% Similarity=0.182 Sum_probs=211.7
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++.+.+++|.+.|++++|+|+|++||+|+.||+|+|||++ ++.....+..|...+..++|.++.....+++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3567889999999999999999999999999999999998 45556677788899999999877545567778889999
Q ss_pred EEEEcCCCc--eEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECC----
Q psy16316 90 RYLSLHDNK--YIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDP---- 158 (335)
Q Consensus 90 ~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~---- 158 (335)
++||+.+++ .+..+.+|...|.+++|+|+ +++|++++.|+.|++||++........ .+...+..+.|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77888999999999999999 899999999999999999887543332 2344556778998
Q ss_pred ---------CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---CCEEEEEeCCCeEEEEECCC
Q psy16316 159 ---------EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD---GKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 159 ---------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~ 226 (335)
++.++++++.|+.|++||++.... ..........+...+.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 699999999999999999986432 11222223345667899999999 89999999999999999988
Q ss_pred Cee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 227 GQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 227 ~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
++. ...+.....+...+.+++|+|++++|++++.||.|++|++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 642 1222223335667889999999999999999999999998743
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=273.17 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=195.5
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee----eeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR----TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.....+|.+.|++++|+|++.+ ++++.||+|+|||+.+++... ....|...|..++|++++. .+++++.|++|
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v 163 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSV 163 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCE
T ss_pred ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeE
Confidence 3445689999999999999864 567889999999998876543 2346778899999998765 45667789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEe---cCCcceEEECCC-CCEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHV---SGSRPIAAFDPE-GLIFG 164 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~ 164 (335)
++||+.+++.+..+++|...|++++|+|++. .+++++.|++|++||+++++....... ......++|+|+ +.+++
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 9999999999999999999999999999874 799999999999999998876544322 233456789987 57899
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
+|+.|+.|++||++..+ .... ...+...+.+++|+|++ ++|++++.|+.|++||++++++++.+ .|...|
T Consensus 244 ~g~~d~~i~~wd~~~~~--~~~~---~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V 314 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPD--SAQT---SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFV 314 (357)
T ss_dssp EEESSSCEEEEESSCGG--GCEE---ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCE
T ss_pred EeecccceeEEECCCCc--EeEE---EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCE
Confidence 99999999999998642 2222 23345678899999997 57889999999999999999887654 356778
Q ss_pred eEEEEcC-CCcEEEEEeCCCcEEEEECCCC
Q psy16316 244 LEASFTP-DSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 244 ~~~~~sp-~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.+++|+| ++++|||||.||+|++|++.+.
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999 7999999999999999998653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=267.28 Aligned_cols=251 Identities=16% Similarity=0.248 Sum_probs=199.4
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+.+|.+.|.+++|+|++.+|+||+.|++|++||+++++....+.+|...+..++|++++.. +++++.|++|++|
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~--l~s~~~d~~i~~w 145 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ--ILSAGAEREIKLW 145 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTE--EEEEETTSCEEEE
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCE--EEEEcCCCEEEEE
Confidence 34678999999999999999999999999999999999999998888899999999999987664 4566789999999
Q ss_pred EcCCCceEee--ecCCCCCeEEEEECCCC----------CEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCC
Q psy16316 93 SLHDNKYIRY--FPGHTKKVNSLCLSPID----------DTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPE 159 (335)
Q Consensus 93 ~~~~~~~~~~--~~~H~~~V~~~~~~~~~----------~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (335)
|+........ ..+|...|.+++|+|++ .+|++++.|++|++||... .....+ .+...+..++|+|+
T Consensus 146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECTT
T ss_pred eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECCC
Confidence 9984433222 23799999999999986 7899999999999999543 332222 33445667899999
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee--eecc--
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ--TLAG-- 235 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~-- 235 (335)
++++++|+.|++|++||++.... +...+. ....+.+++|+|++.++++++ ++.|++||+.+++... .+..
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~-~~~~~~----~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~ 298 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTY-PQREFD----AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEP 298 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSS-CSEEEE----CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCS
T ss_pred CCEEEEEcCCCeEEEEECCCCcc-cceeec----CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCc
Confidence 99999999999999999954321 122211 223578999999999887664 6679999998876543 3321
Q ss_pred ------cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 236 ------FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 236 ------~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
...+...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 1235556889999999999999999999999998654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=266.44 Aligned_cols=255 Identities=16% Similarity=0.260 Sum_probs=190.0
Q ss_pred cceeee-cc-CCccEEEEEECCCCCEEEEecCCCeEEEEEccCC-------cceeeeecccccceEEEEecCCCeeEEee
Q psy16316 12 KVAKLF-RE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-------TNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 12 ~~~~~~-~~-h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
++...+ .+ |.+.|++++|+|+|++||+|+.|++|+|||.+.. .....+.+|...|..++|++++. .+++
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las 124 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLAT 124 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEE
Confidence 344555 45 9999999999999999999999999999998532 34456677888999999998754 5677
Q ss_pred cCCCCeEEEEEcCC----CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC--CceeEE-EecCCcceEE
Q psy16316 83 TKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP--NCQGIM-HVSGSRPIAA 155 (335)
Q Consensus 83 ~~~d~~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~--~~~~~~-~~~~~~~~~~ 155 (335)
++.|++|++||+.. .+++..+.+|...|.+++|+|++++|+||+.|++|++||..++ .+...+ .+.+.+..+.
T Consensus 125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~ 204 (330)
T 2hes_X 125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204 (330)
T ss_dssp EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE
Confidence 77899999999943 2567789999999999999999999999999999999998765 333333 2334456678
Q ss_pred ECCC--CCEEEEEEcCCeEEEEEccCCCCCce---eeEEec-cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 156 FDPE--GLIFGVGVNSDTIKLYDVRSFDKGPF---SNFKFA-AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 156 ~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~---~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
|+|+ +.++++|+.|++|++||++....... ...... ..+...+.+++|++++ +|++++.|+.|++||..+++.
T Consensus 205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~ 283 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW 283 (330)
T ss_dssp ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence 9998 77899999999999999875321111 111111 2255678899999765 789999999999999987742
Q ss_pred --eeeecccccCCC-CceEEEEcC--CCcEEEEEeCCCcEEEEECCC
Q psy16316 230 --LQTLAGFLNNKG-CPLEASFTP--DSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 230 --~~~~~~~~~~~~-~v~~~~~sp--~~~~l~tgs~dg~v~iwd~~~ 271 (335)
.... ...|.. .+.+++|+| ++++||+|+.||+|++|++.+
T Consensus 284 ~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 284 KVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecc--ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2221 122333 678899999 689999999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=264.15 Aligned_cols=260 Identities=15% Similarity=0.167 Sum_probs=208.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+.+++|++.|++++|+|+|++||+|+.||+|++||+.++. ....+..|...+..++|.+..+...+++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45678999999999999999999999999999999998764 44555678889999999885334466777789999
Q ss_pred EEEEcCCC---------ceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEEE------------
Q psy16316 90 RYLSLHDN---------KYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIMH------------ 146 (335)
Q Consensus 90 ~~~~~~~~---------~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~~------------ 146 (335)
++||+.++ +.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999876 567888999999999999999 9999999999999999998876543221
Q ss_pred --ecCCcceEEECCC---CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC----CEEEEEeCCC
Q psy16316 147 --VSGSRPIAAFDPE---GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG----KYILISTNGS 217 (335)
Q Consensus 147 --~~~~~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~~~ 217 (335)
.......+.++|+ +.++++++.++.+.+|+.... ..........+...+.+++|+|++ .+|++++.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 1223456788887 899999999999977776542 222233334556778999999998 8999999999
Q ss_pred eEEEEECCCCee-------------------------------------------eeeecccccCCCCceEEEEcCCCcE
Q psy16316 218 IIRTFDAYNGQC-------------------------------------------LQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 218 ~i~i~d~~~~~~-------------------------------------------~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
.|++||++++.. .+.+.....|...+.+++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999999986521 1122223345667899999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeEE
Q psy16316 255 VISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
|++|+.||.|++|++.++.+..
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEE
T ss_pred EEEecCCCcEEEEecCcCcchh
Confidence 9999999999999998765443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=304.40 Aligned_cols=289 Identities=21% Similarity=0.347 Sum_probs=245.9
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++....+..|...+..++|++++. .+++++.|+.|++||+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWDS 686 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEET
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEEC
Confidence 46789999999999999999999999999999999999999999989999999999998765 4556668999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
.+++.+..+.+|...|.+++|+|+ +..+++|+.|+.|++||++++.+...+ .+...+..+.|+|++.++++++.|++
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999999999999999994 568999999999999999998877654 34455677899999999999999999
Q ss_pred EEEEEccCCCCCceeeEEe----------ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKF----------AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
|++||++.... ...... .......+.+++|+|++..+++++ ++.+.+||+.++.....+. ..+..
T Consensus 767 v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~~~ 841 (1249)
T 3sfz_A 767 LRLWDVRSANE--RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGHHS 841 (1249)
T ss_dssp EEEEEGGGTEE--EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSSSS
T ss_pred EEEEeCCCCcc--cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCCCC
Confidence 99999976321 111110 011123467789999999999887 6789999999998777664 23556
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+.+++|+|+++++++|+.||.|++||..++.....+. +|.++|.+++|+|++.++++++ +.+++|...
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 78899999999999999999999999999998887774 6999999999999999999987 569999764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=271.64 Aligned_cols=287 Identities=18% Similarity=0.265 Sum_probs=234.1
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++...+.+|.+.|.++.|+|++ +|++|+.||+|++||+++++....+..|...+..+++.+.++...+++++.|+++
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 445677899999999999999998 9999999999999999999998888889999999999987777788888899999
Q ss_pred EEEEcCCCc-----------------------eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 90 RYLSLHDNK-----------------------YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 90 ~~~~~~~~~-----------------------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
++||+.++. .+..+.+|...|.++ +++++.+++|+.|+.|++||++++++...+.
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999998765 255788999999988 4667899999999999999999887766553
Q ss_pred -ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 147 -VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
+...+..+.++|++.++++|+.|++|++||+++.. .. .....+...+.+++++ +.++++++.|+.|++||+.
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~---~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--LM---YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EE---EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EE---EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECC
Confidence 34456678899999999999999999999997632 22 2223455667888887 5899999999999999999
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--c
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--T 303 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~ 303 (335)
+++...... +...+..++|+|++++|++|+ ||.|++||+.++..+......|.++|++++|+++ .++++++ +
T Consensus 381 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~-~l~~~~~~~g 454 (464)
T 3v7d_B 381 DYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDG 454 (464)
T ss_dssp TCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT-EEEEEEEETT
T ss_pred CCceeeeec----CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC-EEEEEEEeCC
Confidence 887654442 233456689999999999999 8999999999998877655678999999999843 3444433 3
Q ss_pred eeEEecccc
Q psy16316 304 NLAFWIPTY 312 (335)
Q Consensus 304 ~~~~w~~~~ 312 (335)
.+.+|++++
T Consensus 455 ~~~i~~ldf 463 (464)
T 3v7d_B 455 QSFLEILDF 463 (464)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEeec
Confidence 456666554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=280.75 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=219.5
Q ss_pred cceeeeccCCcc-EEEEEECC--CCCEEEEecCCCeEEEEEccCC--------cceeeeecccccceEEEEecCCCee--
Q psy16316 12 KVAKLFRENTDK-ITSIDYSA--DGLLLISCSEDDQIVIYDCELG--------TNKRTVFSKKYGVDLIRFTHAKQAA-- 78 (335)
Q Consensus 12 ~~~~~~~~h~~~-V~~v~~s~--~g~~lasgs~Dg~i~lwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (335)
+..+.|.+|.+. |++++|+| +|++||+|+.||+|++||+.++ .....+..+...+..++|++++...
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 577889999999 99999999 9999999999999999999755 4444555556666666666554321
Q ss_pred -----------------------------------------EEeecCCCCeEEEEEcCCCceEeeecCCCC---CeEEEE
Q psy16316 79 -----------------------------------------IHASTKIDDTVRYLSLHDNKYIRYFPGHTK---KVNSLC 114 (335)
Q Consensus 79 -----------------------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~---~V~~~~ 114 (335)
.+++++.|+.+++||+.+++.+..+.+|.. .|.+++
T Consensus 134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 455666789999999999999999999999 999999
Q ss_pred ECCC-CCEEEEeeCCCcEEEeecCCCCceeEE-----EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeE
Q psy16316 115 LSPI-DDTFISGSYDKTVRLWDLRSPNCQGIM-----HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188 (335)
Q Consensus 115 ~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~ 188 (335)
|+|+ +++|++++.|+.|++||+++++....+ .+...+..+.|+ ++.++++++.|+.+++||+++.. ....+
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~--~~~~~ 290 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK--CVQKW 290 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc--EEEEE
Confidence 9999 999999999999999999998877665 344556677888 99999999999999999997532 11111
Q ss_pred Eecc-CCCccce--------------------------------------------------------------------
Q psy16316 189 KFAA-EKECDWT-------------------------------------------------------------------- 199 (335)
Q Consensus 189 ~~~~-~~~~~~~-------------------------------------------------------------------- 199 (335)
.... .....+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 370 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQD 370 (615)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECC
T ss_pred cCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCc
Confidence 1110 0000111
Q ss_pred ------EEEE----------------------------------ccC---------------------------------
Q psy16316 200 ------GIKF----------------------------------SAD--------------------------------- 206 (335)
Q Consensus 200 ------~~~~----------------------------------s~~--------------------------------- 206 (335)
+++| +|+
T Consensus 371 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 371 HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred ccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 1112 111
Q ss_pred -----CCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 207 -----GKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 207 -----~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
++++++++. ++.|++||+.+++... .....+...+.+++|+|++++|++|+.||.|++||+.++.....+..
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 222333333 4444444444332221 11233556788999999999999999999999999999988776654
Q ss_pred CCCCCeEEEEeCC----------CCcEEEeee--ceeEEecccc
Q psy16316 281 DHPSPVQTIQFNP----------KFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 281 ~h~~~v~~v~~sp----------~~~~~~s~~--~~~~~w~~~~ 312 (335)
.|..+|++++|+| ++.++++++ +.+++|....
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 4999999999999 999999997 5699997643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=303.89 Aligned_cols=293 Identities=20% Similarity=0.291 Sum_probs=244.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+....+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++....+..|...+..++|.++....++++++.|+.+
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 34556788999999999999999999999999999999999999999999999999999999998788888888999999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--------------CCcceEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--------------GSRPIAA 155 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--------------~~~~~~~ 155 (335)
++||+.+++++..+.+|...|++++|+|+++.|++++.|++|++||++++......... .....++
T Consensus 726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999887655443221 1344568
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
|+|++..+++++ ++.+.+||+.+.. ... .....+...+.+++|+|+++++++++.++.|++||+.+++....+.+
T Consensus 806 ~s~dg~~l~~~~-~~~v~~~d~~~~~--~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 880 (1249)
T 3sfz_A 806 WSADGDKIIVAA-KNKVLLFDIHTSG--LLA--EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG 880 (1249)
T ss_dssp BCTTSSEEEEEE-TTEEEEEETTTCC--EEE--EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ECCCCCEEEEEc-CCcEEEEEecCCC--cee--EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence 999999999887 6899999997632 122 22234556778999999999999999999999999999988777765
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC---------------------------------------------
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE--------------------------------------------- 270 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~--------------------------------------------- 270 (335)
|...+.+++|+|++++|++++.||.|++|+..
T Consensus 881 ---h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 881 ---HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred ---CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 44567788888888888888888888888742
Q ss_pred ----------------------------------CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 271 ----------------------------------KGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 271 ----------------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
++.....+ .+|.+.|++++|+|+++++++++ +.+++|...
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG-VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC-CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 22222222 35889999999999999999886 568999764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=264.30 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=232.7
Q ss_pred cceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeee-------------cccccceEEEEecCCCe
Q psy16316 12 KVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVF-------------SKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 77 (335)
+..+.+++|.+.|++++|+| +|++||+|+.||+|++||++++....... .|...+..++|.+....
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 44567889999999999999 99999999999999999999887655443 37788999999884332
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC---CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcce
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID---DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPI 153 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~---~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~ 153 (335)
++++++.|+.+++||+.+++.+..+. |...+.++.++|.+ .++++++.|+.|++||++++.....+. +...+..
T Consensus 114 -~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 114 -MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp -CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred -EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 34556679999999999999888876 78899999999854 499999999999999999887766553 4455677
Q ss_pred EEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEE------------eccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 154 AAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFK------------FAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 154 ~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
+.++|++. ++++++.|+.|++||++.... +...+. ....+...+.+++|+|++++|++++.|+.|+
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 89999988 689999999999999986431 111110 0123445678999999999999999999999
Q ss_pred EEECCCCeeeeeecccccC--CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 221 TFDAYNGQCLQTLAGFLNN--KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
+||+.+++.......+... ............+..+++++.|+.|++||+.++.....+. +|.++|++++|+|++++|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTTEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCCEE
Confidence 9999998765544332111 1111112223345567777889999999999998888774 699999999999999999
Q ss_pred Eeee--ceeEEeccccccc
Q psy16316 299 ASAC--TNLAFWIPTYLSN 315 (335)
Q Consensus 299 ~s~~--~~~~~w~~~~~~~ 315 (335)
++++ +.+++|.++..+.
T Consensus 350 ~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEETTSCEEEEEECC---
T ss_pred EEECCCCeEEEEeCCCCCc
Confidence 9996 5699998755443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=265.98 Aligned_cols=243 Identities=19% Similarity=0.243 Sum_probs=200.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
..|++++|+|+|++||+|+.|++|+|||+++++....+.+|...+..++|.+++. .+++++.|+++++||+.+++...
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEE
Confidence 3599999999999999999999999999999998888888999999999998765 45667789999999999998887
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEE--------ecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 102 YFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMH--------VSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
.+. |...+.+++++| ++++|++|+.|++|++||++++.+...+. +...+..+.|+|++.++++|+.|++|
T Consensus 202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 776 567899999999 88999999999999999999887655431 23345678899999999999999999
Q ss_pred EEEEccCCCCCce-------eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 173 KLYDVRSFDKGPF-------SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 173 ~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
++||++....... ........+...+.+++|+|++.+|++++.|+.|++||..+++++..+.+| ...+.+
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h---~~~v~~ 357 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH---RNSVIS 357 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC---CCCEEE
Confidence 9999975321100 001112234556788999999999999999999999999999988877664 456788
Q ss_pred EEEcC------CCcEEEEEeCCCcEEEEECC
Q psy16316 246 ASFTP------DSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 246 ~~~sp------~~~~l~tgs~dg~v~iwd~~ 270 (335)
++|+| ++++||||+.||+|++|+..
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 88875 68899999999999999974
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=268.13 Aligned_cols=282 Identities=20% Similarity=0.313 Sum_probs=231.1
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++.+.+.+|.+.|.++.|+ +.+|++|+.||+|++||+++++....+..|...+..+.+.. ..+++++.|+.+
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i 221 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATL 221 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEE
T ss_pred CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEE
Confidence 345667899999999999997 67999999999999999999999888888888999988853 246677789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
++||+.+++.+..+.+|...|.++++ +++.+++|+.|+.|++||++++++...+. +...+..+.+ ++.++++++.
T Consensus 222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 297 (445)
T 2ovr_B 222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL 297 (445)
T ss_dssp EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence 99999999999999999999999999 67899999999999999999877665543 2223333444 8899999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||+++.. .... ...+...+.++. ++++++++++.|+.|++||+++++++..+..+..+...+.+++|
T Consensus 298 d~~i~i~d~~~~~--~~~~---~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 298 DTSIRVWDVETGN--CIHT---LTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370 (445)
T ss_dssp TSCEEEEETTTCC--EEEE---ECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred CCeEEEEECCCCC--EEEE---EcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE
Confidence 9999999998642 2222 223334444444 46789999999999999999999999888876667777888888
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC----CCCCCCeEEEEeCCCCcEEEeeece------eEEecc
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD----ADHPSPVQTIQFNPKFNMMASACTN------LAFWIP 310 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~----~~h~~~v~~v~~sp~~~~~~s~~~~------~~~w~~ 310 (335)
+ +++|++|+.||.|++||+.++..+..+. ..|.++|++++|+|++.++|+|+.+ +.+|..
T Consensus 371 ~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 371 N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 6 5799999999999999999988776651 3578899999999999999998633 555654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=264.08 Aligned_cols=276 Identities=18% Similarity=0.276 Sum_probs=223.4
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
.++.|+||+++ +||+|. |++|+|||.++++....+. .|...|.+++|++++. .+++++.|++|++||+.+++.+
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcEE
Confidence 36779999864 777775 9999999999998877654 4556799999998765 5667778999999999999999
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
+.+.+|...|.+++++ +..|++|+.|+.+++||.+...... .+ .+........+.|++.++++++.|+.+++||..
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 9999999999999885 5799999999999999998755432 22 234455667899999999999999999999998
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEE-EE--EeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYI-LI--STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
....... .......+...+.+++|+|++..+ ++ ++.|+.|++||+.++++...+.. ...+.++.|+|+++.+
T Consensus 261 ~~~~~~~-~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~l 335 (420)
T 4gga_A 261 PGEGGWV-PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKEL 335 (420)
T ss_dssp CCSSCSC-CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEE
T ss_pred cccccce-eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecCCCCeE
Confidence 6432211 122234455678899999976644 44 34689999999999998887754 2457789999999988
Q ss_pred EEEe--CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 256 ISGS--TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 256 ~tgs--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
++++ .|+.|+|||..++.++..+. +|.++|++++|+|+|.+|+||+ ++|++|..
T Consensus 336 v~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8765 79999999999999888885 6999999999999999999997 57999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=290.43 Aligned_cols=294 Identities=18% Similarity=0.125 Sum_probs=219.7
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-----------eeeecccccceEEEEecCCCeeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-----------RTVFSKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
++...+. |.+.|++++|+|++.+|++|+.||+|++||++++... ....+|...|..++|+|+.. ..+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-~~l 167 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-GTV 167 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-EEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC-CEE
Confidence 3445564 7789999999999999999999999999999987653 12244667899999998643 345
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCC------------------CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGH------------------TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H------------------~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 142 (335)
++++.|+.+ +||+.+++.++.+.+| ...|++++|+|++++|+||+.|++|++||++++++.
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 567789999 9999999998888766 578999999999999999999999999998654421
Q ss_pred eE------------------------------EE------------ec-C-------Cc---------------------
Q psy16316 143 GI------------------------------MH------------VS-G-------SR--------------------- 151 (335)
Q Consensus 143 ~~------------------------------~~------------~~-~-------~~--------------------- 151 (335)
.. +. .. . ..
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 10 00 00 0 00
Q ss_pred ---------------------------------------c---------e------------------------------
Q psy16316 152 ---------------------------------------P---------I------------------------------ 153 (335)
Q Consensus 152 ---------------------------------------~---------~------------------------------ 153 (335)
. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 0 0
Q ss_pred ----------------------------------EEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec------cC
Q psy16316 154 ----------------------------------AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA------AE 193 (335)
Q Consensus 154 ----------------------------------~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~ 193 (335)
++++|+++++++|+.|++|++||+..........+... ..
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 01134566788888888888888765321110011100 13
Q ss_pred CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe---------------------------------------------
Q psy16316 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ--------------------------------------------- 228 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~--------------------------------------------- 228 (335)
+...+.+++|+|++++||+++.|++|++||+.+++
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 45578999999999999999999999999987662
Q ss_pred eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE--e--C-CCCCCCeEEEEeC-----CCC---
Q psy16316 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV--L--D-ADHPSPVQTIQFN-----PKF--- 295 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~--~--~-~~h~~~v~~v~~s-----p~~--- 295 (335)
++..+. .|...|.+++||||| +||+|+.|++|++||+..+..+.. + . .+|.+.|++|+|+ |+|
T Consensus 567 ~~~~l~---~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~ 642 (902)
T 2oaj_A 567 PSTAVH---ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS 642 (902)
T ss_dssp EEEEEC---CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred eeEEEE---cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence 233333 366788999999999 999999999999999987765432 1 1 2799999999999 885
Q ss_pred cEEEeee--ceeEEecccc
Q psy16316 296 NMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 296 ~~~~s~~--~~~~~w~~~~ 312 (335)
.+|++|+ +++++|.+.+
T Consensus 643 ~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 643 ILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEecCCcEEEEEEec
Confidence 7899886 6799998743
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=266.42 Aligned_cols=281 Identities=18% Similarity=0.265 Sum_probs=222.3
Q ss_pred cCCccEE--EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 19 ENTDKIT--SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 19 ~h~~~V~--~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
+|.+.+. ++.|+ +..+++++.|++|++||+++++....+.. +...+..++|++++. .+++++.|+.+++||+.
T Consensus 89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEECc
Confidence 6666544 45555 46688899999999999999988776655 677899999998655 45566679999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEE-EecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
+++.+..+.+|...|.+++|+ ++.|++|+.|+.|++||++... ....+ .+.+.+..+.|+|++.++++|+.|+.|+
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 999999999999999999994 5799999999999999998543 33333 3445567789999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-Ee--CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-ST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
+||++... +.. ....+...+.+++|+|++..+++ ++ .++.|++||+.++++...+. +...+.+++|+|
T Consensus 243 iwd~~~~~--~~~---~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~ 313 (401)
T 4aez_A 243 IWDARSSI--PKF---TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSP 313 (401)
T ss_dssp EEETTCSS--EEE---EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECS
T ss_pred EccCCCCC--ccE---EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECC
Confidence 99998632 222 22345567789999998765554 43 59999999999998887774 335688999999
Q ss_pred CCcEEEE--EeCCCcEEEEECCCCeeEEEe-CCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccccc
Q psy16316 251 DSKYVIS--GSTDGRIHIWNAEKGFKVCVL-DADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYLS 314 (335)
Q Consensus 251 ~~~~l~t--gs~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~~ 314 (335)
++++|++ |+.||.|++||+.++...... ..+|.+.|.+++|+|++.++++++ +.+++|.....+
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999999 558999999999886544332 246899999999999999999886 568999764433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=254.56 Aligned_cols=278 Identities=15% Similarity=0.165 Sum_probs=224.8
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
|.++|.+++|+|||++++++..++.+.+|+............|...+..++|++++.. +++++ |+.+++|++.+++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH--VYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE--EEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE--EEEcC-CCeEEEEECCCCCc
Confidence 5678999999999999999988888877766655555555678889999999987654 44445 99999999987653
Q ss_pred E---eeec--CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 100 I---RYFP--GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 100 ~---~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
. ..+. +|...|.+++|+|++++|++++.|+.|++||+.+++..... .+......+.++|++.++++++.++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 3 3333 79999999999999999999999999999999987643222 22334567789999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|++||+++.. . ......+...+.+++|+|+++++++++.++.|++||+++++....+. +...+.+++|+|+
T Consensus 165 v~~~d~~~~~--~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 165 IAVWDLHNQT--L---VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPT 235 (337)
T ss_dssp EEEEETTTTE--E---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTT
T ss_pred EEEEeCCCCc--e---eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCC
Confidence 9999997632 1 22223345678899999999999999999999999999998777653 3456788999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+++|++++.|+.|++||+.++.... + ..|..+|.+++|+|+++++++++ +.+++|...
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCCeEE-E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 9999999999999999998876543 3 45899999999999999999886 568899764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=247.82 Aligned_cols=276 Identities=18% Similarity=0.273 Sum_probs=219.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
..++|+||+++ +||+| .|++|+|||++++++.+.+. .|...|..++|++++. .+++++.|++|++|++++++.+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 36789999987 77766 49999999999999887665 4556689999998765 4567778999999999999999
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
+.+++|...+.++.+. +..+++++.|+.+++|+.......... .+........+.+++.++++++.|++|++||++
T Consensus 103 ~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 9999999998877664 579999999999999998876543222 234445667899999999999999999999998
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEEE---EEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYIL---ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~---~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
+.+..... ..........+..++++|++..++ +++.++.|++||........... +...+..+.|+|+++.+
T Consensus 181 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 181 PGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKEL 255 (318)
T ss_dssp CBTTBSCC-SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEE
T ss_pred CCcccccc-eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccce
Confidence 64432211 122233445677889998876443 45667899999999887665443 34557789999999987
Q ss_pred EEEe--CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 256 ISGS--TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 256 ~tgs--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
++++ .|+.|++||+.++..+..+. +|.++|++++|+|++++||||+ +.+++|..
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7654 79999999999999888885 6999999999999999999997 56999965
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=272.62 Aligned_cols=289 Identities=17% Similarity=0.279 Sum_probs=212.4
Q ss_pred hcccceeeeccCCc---cEEEEEECCC-CCEEEEecCCCeEEEEEccCCcceeee-e---cccccceEEEEecCCCeeEE
Q psy16316 9 RSYKVAKLFRENTD---KITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTV-F---SKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 9 ~~~~~~~~~~~h~~---~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 80 (335)
+..++...+.+|.+ .|.++.|+|+ |++|++|+.||.|++||+.+++....+ . .+...+..++|. ++. .+
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~l 267 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ--KF 267 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS--EE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC--EE
Confidence 34566778999999 9999999999 999999999999999999999888877 4 778888999998 433 44
Q ss_pred eecCCCCeEEEEEcCCCceEeeec---------------------------------------------CCCCCeEEEEE
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFP---------------------------------------------GHTKKVNSLCL 115 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~---------------------------------------------~H~~~V~~~~~ 115 (335)
++++.|+.+++||+.+++.+..+. +|...|.+++|
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 555567888888887665544443 34444444444
Q ss_pred CCC---------------------------------CCEEEEeeCCCcEEEeecCCCC----------------------
Q psy16316 116 SPI---------------------------------DDTFISGSYDKTVRLWDLRSPN---------------------- 140 (335)
Q Consensus 116 ~~~---------------------------------~~~l~s~s~D~~i~vWd~~~~~---------------------- 140 (335)
|+ ++.|++++.|+.|++||+.++.
T Consensus 348 -~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 348 -NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp -TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred -cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 32 3344444444444444433211
Q ss_pred ------------ceeEEEecCCcceEEECCCCCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC
Q psy16316 141 ------------CQGIMHVSGSRPIAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG 207 (335)
Q Consensus 141 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 207 (335)
....+........++++ +.++++++. ++.+++||+.... ... .....+...+.+++|+|++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~---~~~-~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE---VSF-DLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE---EEE-ECSSCCSSCEEEEEECTTS
T ss_pred CceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc---ccc-cccCCccCceEEEEECCCC
Confidence 11111112222334444 778889998 9999999987521 111 2334456678999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC----------CCcEEEEEeCCCcEEEEECCCC-eeEE
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP----------DSKYVISGSTDGRIHIWNAEKG-FKVC 276 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp----------~~~~l~tgs~dg~v~iwd~~~~-~~~~ 276 (335)
++|++++.|+.|++||+.+++++..+.+. +...+.+++|+| ++++||+|+.||.|++||+.++ ....
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 99999999999999999999988776541 456789999999 9999999999999999999987 4555
Q ss_pred EeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 277 VLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 277 ~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+ .+|.++|++++|+|++. |++++ +.+++|.+.
T Consensus 579 ~~-~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 579 AL-NAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ET-TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred hh-hcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 44 56999999999999999 88886 569999764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=262.86 Aligned_cols=272 Identities=19% Similarity=0.344 Sum_probs=218.0
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
.+|.+.|.++.| +|++|++|+.||+|++||+.+++....+.+|...+..+++ + ...+++++.|++|++||+.++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESSSC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECCCC
Confidence 467788999977 8999999999999999999999998888889999988888 2 336677788999999999999
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
+.+..+.+|...|.+++|++ +.+++|+.|++|++||++++...... ...+...+..+..++.++++|+.|++|++|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 99999999999999999975 59999999999999999987655321 122222333344488999999999999999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
|+++.. ....+ ..+...+.++++ ++.++++++.|+.|++||+++++++..+.+| ...+.+++| ++.+|
T Consensus 282 d~~~~~--~~~~~---~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 282 NTSTCE--FVRTL---NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRF--DNKRI 349 (435)
T ss_dssp ETTTCC--EEEEE---ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC---SSCEEEEEC--CSSEE
T ss_pred ECCcCc--EEEEE---cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC---cCcEEEEEe--cCCEE
Confidence 998642 22222 234456677777 5789999999999999999999998888664 455777777 78899
Q ss_pred EEEeCCCcEEEEECCCCe---------eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 256 ISGSTDGRIHIWNAEKGF---------KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~---------~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
++|+.||.|++||+.++. ....+ .+|.++|.+++| ++.++++++ +.+++|.+..
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 999999999999986543 45555 469999999999 567788876 6799998643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=248.30 Aligned_cols=246 Identities=14% Similarity=0.226 Sum_probs=193.7
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC--CceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEe
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD--NKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLW 134 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vW 134 (335)
+.+|...|..++|++++. .+++++.|++|++|++.. .+.+..+.+|.+.|++++|+++ +++|+||+.|++|++|
T Consensus 5 ~~~h~~~V~~~~~s~~g~--~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGK--RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp CCSCSSCEEEEEECTTSS--EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred ccCCcCceEEEEECCCCC--EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456788899999998765 466777899999999974 4678899999999999999864 7899999999999999
Q ss_pred ecCCCCcee--EE-EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---
Q psy16316 135 DLRSPNCQG--IM-HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--- 206 (335)
Q Consensus 135 d~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--- 206 (335)
|+++++... .+ .+...+..+.|+|+ +.++++++.|++|++||++........ ....+...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI---IIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE---EEECCSSCEEEEEECCCC--
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee---eeecccCccceEeecCCccc
Confidence 998775322 22 23445667889997 889999999999999999864221111 12234556889999997
Q ss_pred ----------CCEEEEEeCCCeEEEEECCCCe----eeeeecccccCCCCceEEEEcCCC---cEEEEEeCCCcEEEEEC
Q psy16316 207 ----------GKYILISTNGSIIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDS---KYVISGSTDGRIHIWNA 269 (335)
Q Consensus 207 ----------~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~---~~l~tgs~dg~v~iwd~ 269 (335)
+++|++++.|+.|++||+++++ ....+.+ |...|.+++|+|++ ++||+|+.|++|++||.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~---H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC---CCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999998765 3344443 56678999999985 89999999999999998
Q ss_pred CCCe---eEEEe-CCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 270 EKGF---KVCVL-DADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 270 ~~~~---~~~~~-~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
.+.. ....+ ...|+..|.+++|+|++++||+++ +.+++|....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 7642 22222 146889999999999999999886 5699997643
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=278.12 Aligned_cols=248 Identities=21% Similarity=0.319 Sum_probs=203.9
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+.+.+|.+.|.++.|+|+|++|+|||.||+|+|||+.++.....+.+|...|..++|++++.. +++++.|++|++||
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC--EEEEETTSCEEEEC
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCE--EEEEeCCCEEEEEE
Confidence 3578999999999999999999999999999999999999998889999999999999987654 45667899999999
Q ss_pred cCCCceEee---ecCCCCCeEEEEECCCC--CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEE
Q psy16316 94 LHDNKYIRY---FPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 94 ~~~~~~~~~---~~~H~~~V~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (335)
......... ..+|...|.+++|+|++ ..|++|+.|++|++||+++.++...+. +.+.+..++++|++.++++|+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 866543332 25799999999999986 589999999999999999887765542 445567789999999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc---------
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--------- 238 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--------- 238 (335)
.|++|++||+++.. .. ........+.+++|+|++.++++++ ++.|++||+++++.+..+..+..
T Consensus 581 ~Dg~i~iwd~~~~~--~~----~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 581 KDGVVLLWDLAEGK--KL----YSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp TTSBCEEEETTTTE--EE----ECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred CCCeEEEEECCCCc--eE----EEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence 99999999997632 11 1122345678999999999887776 45699999999988776643211
Q ss_pred -------CCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 239 -------NKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 239 -------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+...+.+++|+|+|++|++|+.||.|++|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 11235679999999999999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=257.91 Aligned_cols=255 Identities=18% Similarity=0.259 Sum_probs=206.7
Q ss_pred ceeeecc-CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~-h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..+.+.. |.+.|++++|+|+|.+|++|+.||.|++||+++++....+..|...+..++|.. ..+++++.|+.+++
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i 200 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHH 200 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC----CEEEEEcCCCCEEE
Confidence 3445554 899999999999999999999999999999999998888888999999999943 36677778999999
Q ss_pred EEcC-CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCC-CEEEEEE-
Q psy16316 92 LSLH-DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEG-LIFGVGV- 167 (335)
Q Consensus 92 ~~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~- 167 (335)
||+. ....+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.....+ .+...+..+.|+|++ .++++++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence 9998 56778889999999999999999999999999999999999987776554 344556778999965 6677765
Q ss_pred -cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 168 -NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 168 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
.|+.|++||+++.. ....+ .....+.+++|+|+++++++++ .++.|++||+.+++...... ...+...+.
T Consensus 281 s~d~~i~i~d~~~~~--~~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-~~~h~~~v~ 353 (401)
T 4aez_A 281 TMDKQIHFWNAATGA--RVNTV----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-IPAHDTRVL 353 (401)
T ss_dssp TTTCEEEEEETTTCC--EEEEE----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-EECCSSCCC
T ss_pred CCCCEEEEEECCCCC--EEEEE----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-ecCCCCCEE
Confidence 79999999998632 22222 2345678999999999999954 79999999999876554432 233556788
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
+++|+|++++|++++.||.|++|++.++......
T Consensus 354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999999999999999999999888765543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=253.04 Aligned_cols=288 Identities=11% Similarity=0.119 Sum_probs=205.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++.+.+++|.+.|.+++|+|||++||+|+.|+ ++|||+++++..... +..++..+.+.+..+.. +.+++.|+++
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~d~~v 83 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYV-AFVTGVKEVV 83 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEEECTTSSEE-EEECSSTTEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEEEcCCCCEE-EEEECCccEE
Confidence 3445566789999999999999999999998775 789999877654332 22357778887766544 3445568899
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-CceeEEEecCCcceEEECCCCCEEEE--E
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-NCQGIMHVSGSRPIAAFDPEGLIFGV--G 166 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 166 (335)
++||+.+++.+..+. |...|.+++++++. ++.+ .|+.|++||+.+. +....+.. .....++++ .+++. |
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEES
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCC
Confidence 999999999998887 67799999998863 4333 4889999999987 55443333 334556666 55555 5
Q ss_pred EcCCeEEEEEccCCCCC------c----eee-EEeccCCCccceEEEEccCCCEEEEEeCCCe-EEEEECCCCeeeeeec
Q psy16316 167 VNSDTIKLYDVRSFDKG------P----FSN-FKFAAEKECDWTGIKFSADGKYILISTNGSI-IRTFDAYNGQCLQTLA 234 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~------~----~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~ 234 (335)
+.+++|++||++..... . ... ......+...+.+++|+|++++|++++.|++ |++||+++++++..+.
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 78999999999863200 0 000 1223456677899999999999999999998 9999999999988876
Q ss_pred -ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee--EE--------------------EeCCCCCCCeEEEEe
Q psy16316 235 -GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK--VC--------------------VLDADHPSPVQTIQF 291 (335)
Q Consensus 235 -~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~--~~--------------------~~~~~h~~~v~~v~~ 291 (335)
+. |...+.+++|+|++++|++|+.|++|++||+..+.. .. .+...+..+...++|
T Consensus 236 ~g~--h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 236 RGL--DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp CTT--CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred cCC--CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 31 446788999999999999999999999999875421 11 111222234467999
Q ss_pred CCCCcEEEeee--ceeEEeccc
Q psy16316 292 NPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 292 sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+|+++++++++ +.+++|...
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEEE
Confidence 99999999885 557777653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=260.17 Aligned_cols=278 Identities=22% Similarity=0.397 Sum_probs=226.0
Q ss_pred cccceeeeccCCccE-EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKI-TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V-~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.++..+.+++|.+.| .+ ++++|++|++|+.||+|++||+.+++....+.+|...+..+.+.. ..+++++.|++
T Consensus 107 ~~~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~ 180 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRT 180 (445)
T ss_dssp CCCCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSC
T ss_pred CcceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCe
Confidence 355678899999976 55 455799999999999999999999999988888999999999873 26677788999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (335)
|++||+.+++.+..+.+|...|.+++++ ++.+++|+.|++|++||+.++++...+. +...+..+.+ ++.++++|+
T Consensus 181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 9999999999999999999999999996 4689999999999999999988766553 2333334444 788999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
.|+.|++||+++.. .. .....+...+.+++| ++.++++++.|+.|++||+++++++..+.++ ...+.++.
T Consensus 257 ~dg~i~iwd~~~~~--~~---~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~ 326 (445)
T 2ovr_B 257 YDFMVKVWDPETET--CL---HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH---QSLTSGME 326 (445)
T ss_dssp TTSCEEEEEGGGTE--EE---EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC---CSCEEEEE
T ss_pred CCCEEEEEECCCCc--Ee---EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC---cccEEEEE
Confidence 99999999997632 12 222344556777887 8899999999999999999999988887654 33444454
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+++++|++|+.||.|++||+.++.....+.. .|..+|.+++|++ .++++++ +.+++|.+.
T Consensus 327 --~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 327 --LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp --EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETT
T ss_pred --EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECC
Confidence 4677999999999999999998887776643 4889999999975 6788776 569999753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=262.62 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=221.3
Q ss_pred cEEEEEECCCCC-EEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEec-CCCeeEEeecCCCCeEEEEEcCC
Q psy16316 23 KITSIDYSADGL-LLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 23 ~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
....++++|+.. ++++|+.||.|+|||+.... ....+.+|...|..++|++ +.. ++++++.|++|++|++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 345688898876 45578999999999996542 3345567888999999998 443 556667899999999998
Q ss_pred C-------ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEEE
Q psy16316 97 N-------KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 97 ~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 165 (335)
+ +.+..+.+|...|.+++|+|++ ++|++++.|++|++||++++++...+. +...+..+.|+|++.++++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 7 5678899999999999999998 699999999999999999887766552 3445667899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE---eCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS---TNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
++.|+.|++||++... ....+. .......+..+.|+|++.+|+++ +.++.|++||+++++....... ..+...
T Consensus 194 ~~~d~~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~ 269 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGT--VVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSG 269 (402)
T ss_dssp EETTSEEEEEETTTTE--EEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSS
T ss_pred EecCCcEEEEeCCCCc--eeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCc
Confidence 9999999999998632 222211 11222236789999999999998 7899999999998764221211 123456
Q ss_pred ceEEEEcCCCcEEE-EEeCCCcEEEEECCCCee-EEEe-CCCCCCCeEEEEeCCCCcEEEeeeceeEEecccc
Q psy16316 243 PLEASFTPDSKYVI-SGSTDGRIHIWNAEKGFK-VCVL-DADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312 (335)
Q Consensus 243 v~~~~~sp~~~~l~-tgs~dg~v~iwd~~~~~~-~~~~-~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~ 312 (335)
+..++|+|++++|+ +|+.|+.|++||+.++.. ...+ ...|..+|.+++|+|++.++++++..+++|.+..
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 88999999999886 566899999999987762 2222 1226789999999999999999989999998743
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=255.04 Aligned_cols=256 Identities=11% Similarity=0.052 Sum_probs=206.1
Q ss_pred ccCCccEEEEEECCC---CCEEEEecCCCeEEEEEccCCc-ceeeeecccccceEEEEec----CCCeeEEeecCCCCeE
Q psy16316 18 RENTDKITSIDYSAD---GLLLISCSEDDQIVIYDCELGT-NKRTVFSKKYGVDLIRFTH----AKQAAIHASTKIDDTV 89 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~---g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i 89 (335)
.+|.+.|.++.|+|+ |.+|++|+.||+|++||+++++ ....+..|...+..+.|.+ .++...+++++.|+.+
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 379999999999999 7999999999999999999988 7777788888999997753 2344466777789999
Q ss_pred EEEEcCCCc-eEeeecCCCC----CeEEEE----ECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC--
Q psy16316 90 RYLSLHDNK-YIRYFPGHTK----KVNSLC----LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-- 158 (335)
Q Consensus 90 ~~~~~~~~~-~~~~~~~H~~----~V~~~~----~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-- 158 (335)
++||+.+++ .+..+..|.+ .|.+++ |+|++++|++++.|+.|++||+++++......+...+..+.|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 999999876 6777766655 899998 78899999999999999999999988766656666777889999
Q ss_pred -CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCeee------
Q psy16316 159 -EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQCL------ 230 (335)
Q Consensus 159 -~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~~------ 230 (335)
++.++++++.|+.|++||++...............+...+.+++|+|+++ ++++++.|+.|++||++++...
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 89999999999999999998643222222112224566789999999999 8999999999999998765322
Q ss_pred ----------eeecccccCCCCceEEEEcCCCcEEE-EEeCCCcEEEEECCCCe
Q psy16316 231 ----------QTLAGFLNNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 231 ----------~~~~~~~~~~~~v~~~~~sp~~~~l~-tgs~dg~v~iwd~~~~~ 273 (335)
+.+.....+...+.+++|+|++++|+ +|+.|+.|++||+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 22333344567789999999999998 89999999999997654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=258.43 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=213.0
Q ss_pred ccceeeeccCCccEEEEEECCC----C---CEEEEecCCCeEEEEEccCCcc-----eeeeecc-----cccceEEEEe-
Q psy16316 11 YKVAKLFRENTDKITSIDYSAD----G---LLLISCSEDDQIVIYDCELGTN-----KRTVFSK-----KYGVDLIRFT- 72 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~----g---~~lasgs~Dg~i~lwd~~~~~~-----~~~~~~~-----~~~~~~~~~~- 72 (335)
+++...+.+|.+.|.++.|+|+ | .+|++|+.||+|++||+++++. ...+..+ ...+..++|.
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 5578889999999999999999 9 9999999999999999999887 7777777 5889999999
Q ss_pred ---cCCCeeEEeecCCCCeEEEEEcCC------CceEe-----ee-------cCCCCCeEEEEECCCCCEEEEeeCCCcE
Q psy16316 73 ---HAKQAAIHASTKIDDTVRYLSLHD------NKYIR-----YF-------PGHTKKVNSLCLSPIDDTFISGSYDKTV 131 (335)
Q Consensus 73 ---~~~~~~~~~~~~~d~~i~~~~~~~------~~~~~-----~~-------~~H~~~V~~~~~~~~~~~l~s~s~D~~i 131 (335)
++... .+++++.|+.+++||+.+ ++.+. .+ ..|...|.+++|+|++ .|++++.|+.|
T Consensus 132 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 132 SNDRLLSH-RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CC----CE-EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ccCCCCce-EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 65443 156666799999999998 66666 67 4489999999999999 99999999999
Q ss_pred EEeecCCCCceeEEEe-------cCCcceEEECCCCCEEEEEEcC---CeEEEEEccCCCCCceeeEEecc---------
Q psy16316 132 RLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGLIFGVGVNS---DTIKLYDVRSFDKGPFSNFKFAA--------- 192 (335)
Q Consensus 132 ~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~--------- 192 (335)
++||+++++....+.. ...+..+.|+|++.++++++.| +.|++||++... ....+....
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CC
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccc
Confidence 9999998877766654 5567788999999999999999 999999998632 222221100
Q ss_pred -CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec------cc------------ccCCCCceEEEEcCCC-
Q psy16316 193 -EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA------GF------------LNNKGCPLEASFTPDS- 252 (335)
Q Consensus 193 -~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~------------~~~~~~v~~~~~sp~~- 252 (335)
.+...+.+++|+|++++|++++.|+.|++||+.+++++..+. ++ ..|...+.+++|+|++
T Consensus 288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 045678899999999999999999999999999999888887 43 0115678999999998
Q ss_pred ---------cEEEEEeCCCcEEEEECCCC
Q psy16316 253 ---------KYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 253 ---------~~l~tgs~dg~v~iwd~~~~ 272 (335)
++|++|+.||.|++|++.++
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=257.55 Aligned_cols=246 Identities=15% Similarity=0.220 Sum_probs=199.6
Q ss_pred CCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEec-CCCeeEEeecCCCCeEEEEEc
Q psy16316 20 NTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 20 h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~ 94 (335)
|.+.|++++|+|+ |.+|++|+.||+|++||+++++....+..|...+..++|.+ ++. .+++++.|+.|++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEe
Confidence 7788999999999 67999999999999999999998888888999999999998 444 4556667999999999
Q ss_pred CCCceEeee---cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-------------------------
Q psy16316 95 HDNKYIRYF---PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH------------------------- 146 (335)
Q Consensus 95 ~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~------------------------- 146 (335)
.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 999998888 7899999999999999999999999999999998754332111
Q ss_pred ----ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC---------ceeeEEeccCCCccceEEEEccC--CCEEE
Q psy16316 147 ----VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG---------PFSNFKFAAEKECDWTGIKFSAD--GKYIL 211 (335)
Q Consensus 147 ----~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~--~~~l~ 211 (335)
+...+..+.++ +.++++++.|+.|++||++..... ..........+...+.+++|+|+ +++|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 23334556665 779999999999999999764320 11112222334456778999999 99999
Q ss_pred EEeCCCeEEEEECCCCeeee----eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 212 ISTNGSIIRTFDAYNGQCLQ----TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+++.++.|++||+.+++... .+..+ .+...+.+++|+|++++|++|+.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999886543 34332 125678999999999999999999999999975
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=256.71 Aligned_cols=266 Identities=13% Similarity=0.145 Sum_probs=199.5
Q ss_pred EECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC---------CCc
Q psy16316 28 DYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH---------DNK 98 (335)
Q Consensus 28 ~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~---------~~~ 98 (335)
.+.+++.+|+||+.||+|++||+++++....+. ...+..+.+.+. +++++.|+++++|+.. +++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 445688999999999999999999998776654 344555556554 6677889999999665 555
Q ss_pred eEeeec-CCCCCeEEEEECC--CCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 99 YIRYFP-GHTKKVNSLCLSP--IDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 99 ~~~~~~-~H~~~V~~~~~~~--~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
.++.+. +|.+.|.+++|+| +++++++|+.|++|++||++++++.... +.......++|+|++.++++|+.|++|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 454443 7889999999999 9999999999999999999998875544 2233467789999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc--eEEEEcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP--LEASFTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~sp~ 251 (335)
+||+++..... . .+...+...+.+++|+|++.+|++++++ .|++||++++++...+..+..+...+ .+++|+|+
T Consensus 196 iwd~~~~~~~~-~--~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQAS-S--RFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCC-E--ECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEECCCCCCCc-c--EEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 99998753210 1 1222356788999999999999999955 99999999987766655432222222 35999999
Q ss_pred CcEEEEEeC-CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC---CCcEEEeee--ceeEEec
Q psy16316 252 SKYVISGST-DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP---KFNMMASAC--TNLAFWI 309 (335)
Q Consensus 252 ~~~l~tgs~-dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp---~~~~~~s~~--~~~~~w~ 309 (335)
+++|++++. |+.|++|++.+..+.... .++..++|+| +...+++++ +.+.++.
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 999999998 999999998765433222 4667888888 777777665 4455553
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=282.38 Aligned_cols=207 Identities=14% Similarity=0.191 Sum_probs=157.1
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce--eEEE----------ecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 104 PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ--GIMH----------VSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
.||...+.+++|+|++++|+||+.|++||+||+.++... ..+. +...+..++|+|+++++|+|+.|++
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt 511 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD 511 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence 455555666667889999999999999999999887432 1121 2234667899999999999999999
Q ss_pred EEEEEccCCCCC---------c-------------------------------eeeEEeccCCCccceEEEEccCCCEEE
Q psy16316 172 IKLYDVRSFDKG---------P-------------------------------FSNFKFAAEKECDWTGIKFSADGKYIL 211 (335)
Q Consensus 172 v~iwd~~~~~~~---------~-------------------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~ 211 (335)
|++||+...... . .........+...+.+++|||+| +||
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 999999754100 0 01122233466788999999999 999
Q ss_pred EEeCCCeEEEEECCCCeeee--eecccc-cCCCCceEEEEc-----CCC---cEEEEEeCCCcEEEEEC---CCCeeEEE
Q psy16316 212 ISTNGSIIRTFDAYNGQCLQ--TLAGFL-NNKGCPLEASFT-----PDS---KYVISGSTDGRIHIWNA---EKGFKVCV 277 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~~~~~--~~~~~~-~~~~~v~~~~~s-----p~~---~~l~tgs~dg~v~iwd~---~~~~~~~~ 277 (335)
+++.|++|++||+++...+. .+..+. .|...|.+++|+ ||| ++|++|+.|++|++||+ .+|.....
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 99999999999998877653 233443 677889999999 885 89999999999999998 56654443
Q ss_pred eC----CCCCCCeEEEE-eC----------------------CCCcEEEeeeceeEEeccc
Q psy16316 278 LD----ADHPSPVQTIQ-FN----------------------PKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 278 ~~----~~h~~~v~~v~-~s----------------------p~~~~~~s~~~~~~~w~~~ 311 (335)
+. ..|.++|..++ |+ |++.+++++...+++|.+.
T Consensus 671 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~ 731 (902)
T 2oaj_A 671 LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLG 731 (902)
T ss_dssp EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTT
T ss_pred ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCc
Confidence 32 22457888887 66 6778899998999999874
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.40 Aligned_cols=245 Identities=16% Similarity=0.252 Sum_probs=188.5
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeEEEEECC--CCCEEEEeeCCCcEEEe
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVRLW 134 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~i~vW 134 (335)
+.+|...|..++|++++. .+++++.|++|++||+.+++ .+..+++|.+.|++++|++ ++++|+||+.|++|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~--~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGT--RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -----CCEEEEEECGGGC--EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cccccCeEEEeeEcCCCC--EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 346888899999998654 56777889999999998764 4678999999999999986 37899999999999999
Q ss_pred ecCCCCceeEE---EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---
Q psy16316 135 DLRSPNCQGIM---HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--- 206 (335)
Q Consensus 135 d~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--- 206 (335)
|++++...... .+...+..++|+|+ +.++++|+.|++|++||++... ..........+...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--QWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--CEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--CcceeeeeccccCCcceEEEccccCC
Confidence 99887533222 23445677899997 7899999999999999997532 11111222344556778999997
Q ss_pred --------------CCEEEEEeCCCeEEEEECCCC---eeeeeecccccCCCCceEEEEcCCC----cEEEEEeCCCcEE
Q psy16316 207 --------------GKYILISTNGSIIRTFDAYNG---QCLQTLAGFLNNKGCPLEASFTPDS----KYVISGSTDGRIH 265 (335)
Q Consensus 207 --------------~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~tgs~dg~v~ 265 (335)
+.+|++++.|+.|++||++.. ++...+. .|...|.+++|+|++ ++||+|+.|++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 468999999999999999765 3444444 456678999999986 8999999999999
Q ss_pred EEECCCC---e-eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 266 IWNAEKG---F-KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 266 iwd~~~~---~-~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+|++.+. . ....+ ..|.++|++++|+|++++||+++ +.+++|..+
T Consensus 242 iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9998752 1 11223 34889999999999999999886 569999764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=254.71 Aligned_cols=249 Identities=16% Similarity=0.250 Sum_probs=202.7
Q ss_pred cceeee--ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLF--RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~--~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++.+.+ .+|.+.|++|+|+|+|++||+|+.||+|+|||+++++.+..+.+|...+..+.+.. .++++++.|+.+
T Consensus 136 ~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~----~~l~sgs~d~~i 211 (420)
T 4gga_A 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSGSRSGHI 211 (420)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEE
T ss_pred CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC----CEEEEEeCCCce
Confidence 444544 47889999999999999999999999999999999999999888888888777643 366778889999
Q ss_pred EEEEcCC-CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-----EEEecCCcceEEECCCC-CE
Q psy16316 90 RYLSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-----IMHVSGSRPIAAFDPEG-LI 162 (335)
Q Consensus 90 ~~~~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~ 162 (335)
++||... ...+..+.+|...+..+.++|+++.+++++.|+.+++||..+++... ...+...+..++++|.+ .+
T Consensus 212 ~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred eEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 9999976 45667899999999999999999999999999999999998765321 11233445567788854 56
Q ss_pred EEEE--EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeeccccc
Q psy16316 163 FGVG--VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 163 ~~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
++++ +.|++|++||+++.. ....+ .....+..+.|+|+++.+++++ .|+.|++||..+++++.++.+|
T Consensus 292 la~~~gs~D~~I~iwd~~t~~--~~~~~----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-- 363 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGA--CLSAV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-- 363 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTE--EEEEE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--
T ss_pred EEEEeecCCCEEEEEeCCccc--cceee----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--
Confidence 6554 478999999998632 12211 2234567899999999998876 6899999999999999988764
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
...|.+++|+|||++|||||.|++|+|||+.+..
T Consensus 364 -~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 364 -TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred -CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 5678999999999999999999999999987543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=281.35 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=208.0
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..++++|.+.|++++|+|+|++|++|+.||+|+|||+. ++.....+.+|...|..++|+++.....+++++.|+.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45788999999999999999999999999999999998 4455667778889999999998855667778888999999
Q ss_pred EEcCCCc--eEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECC------
Q psy16316 92 LSLHDNK--YIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDP------ 158 (335)
Q Consensus 92 ~~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~------ 158 (335)
||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||+|++||++++...... .+...+..+.++|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 77888999999999999999 999999999999999999887433222 3344566778888
Q ss_pred -------CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---CCEEEEEeCCCeEEEEECCCCe
Q psy16316 159 -------EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD---GKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 159 -------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
++.++++|+.|++|++||++.... ..........+...+.+++|+|+ +.++++++.|+.|++||+.+++
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 589999999999999999986432 11222233455677899999999 8999999999999999998864
Q ss_pred e--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 229 C--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 229 ~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
. ...+.....+...+.+++|+|++++|++|+.||.|++|++..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 2 1222233345667889999999999999999999999998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=244.34 Aligned_cols=253 Identities=17% Similarity=0.264 Sum_probs=202.3
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+++|.+.|.++.|+|+|++|++|+.|+.|++|+............+...+....+.+... .+++++.|+.+++|
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEE
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc--cceeecCCCeEEEE
Confidence 4567899999999999999999999999999999999998887776666666677777766554 34566689999999
Q ss_pred EcCCCce-EeeecCCCCCeEEEEECCCC--CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 93 SLHDNKY-IRYFPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 93 ~~~~~~~-~~~~~~H~~~V~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
|+..... ...+.+|...|..++|++++ ..+++++.|++|++||++++++...+. +...+..++|+|+++++++|+.
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 9976544 45577899999999998864 578999999999999999887665542 3445667889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc------ccCCCC
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF------LNNKGC 242 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~~~~ 242 (335)
|++|++||++... +...+ .....+..+.|+|++.+++ ++.|+.|++||++++..+..+... ..+...
T Consensus 236 Dg~i~iwd~~~~~--~~~~~----~~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 236 DGQAMLWDLNEGK--HLYTL----DGGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp TCEEEEEETTTTE--EEEEE----ECSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred CCeEEEEEeccCc--eeeee----cCCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 9999999998632 22222 1234578899999887655 556899999999998877666432 235567
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
|.+++|+|++++|++|+.||.|+|||+.+|.+
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 88999999999999999999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=273.15 Aligned_cols=290 Identities=15% Similarity=0.173 Sum_probs=235.7
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+..+.+.+|.++|+++.|+|+|++||+|+.||+|++||+.+++....+..|...+..++|++++.. +++++.|+.+
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i 121 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLSGSDDLTV 121 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSEE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCE--EEEEcCCCEE
Confidence 34566788999999999999999999999999999999999999998888889999999999987664 4566679999
Q ss_pred EEEEcCCC-ceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECC--CCCEE
Q psy16316 90 RYLSLHDN-KYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDP--EGLIF 163 (335)
Q Consensus 90 ~~~~~~~~-~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 163 (335)
++||+.++ .....+.+|...|.+++|+| +++.|++++.|++|++||+.++......... .....+.++| ++.++
T Consensus 122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 99999987 77788999999999999999 7889999999999999999887766554332 4566788998 99999
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
++++.++.|++||++... ... ....+...+.+++|+|+++++++++.|+.|++||+.+++....+.. +...+
T Consensus 202 ~~~~~dg~i~~~d~~~~~--~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---~~~~v 273 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKS--CVA---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV---GLERS 273 (814)
T ss_dssp EEECTTSEEEEEETTTTE--EEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC---SSSSE
T ss_pred EEEeCCCEEEEEECCCCc--EEE---EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec---CCCcE
Confidence 999999999999997532 222 2233455688999999999999999999999999999988877755 34567
Q ss_pred eEEEEcCCCc--EEEEEeCCCcEEEEECCCCeeEEEe------------------------------------------C
Q psy16316 244 LEASFTPDSK--YVISGSTDGRIHIWNAEKGFKVCVL------------------------------------------D 279 (335)
Q Consensus 244 ~~~~~sp~~~--~l~tgs~dg~v~iwd~~~~~~~~~~------------------------------------------~ 279 (335)
.+++|+|+++ ++++++ |+.+.+|+.........+ .
T Consensus 274 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 274 WCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp EEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred EEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 8999999987 466665 566888886542111100 0
Q ss_pred CCCCCCeEEEEeCCCCcEEEeee-ceeEEecc
Q psy16316 280 ADHPSPVQTIQFNPKFNMMASAC-TNLAFWIP 310 (335)
Q Consensus 280 ~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w~~ 310 (335)
..|...+.+++|+|+|.++++++ +.+.+|..
T Consensus 353 ~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~ 384 (814)
T 3mkq_A 353 GSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTA 384 (814)
T ss_dssp CCCSSCCSEEEECTTSSEEEEEETTEEEEEET
T ss_pred CCCccCCceeEECCCCCEEEEecCCEEEEEEC
Confidence 22455688999999999888775 56888875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=255.42 Aligned_cols=251 Identities=14% Similarity=0.129 Sum_probs=193.1
Q ss_pred eeccCCccEEEEEECCC---------CCEEEEecCCCeEEEEEccCCcceeeee---------cccccceEEEEecCCCe
Q psy16316 16 LFRENTDKITSIDYSAD---------GLLLISCSEDDQIVIYDCELGTNKRTVF---------SKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~---------g~~lasgs~Dg~i~lwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 77 (335)
.|.+|.+.|.+++++++ +..|++|+.|+++|+|+++......... .+...+..++|+|++..
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 46789999999876543 2233445678999999987765432211 11233678999999998
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceE
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIA 154 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~ 154 (335)
.++++++.|++|++||+.+++.+..++ |...|.+++|+|++++|++++.| .+++|+..++....... +......+
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKI 225 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEE
Confidence 888899999999999999999988886 77889999999999999999855 56667666666543321 12234567
Q ss_pred EECCCCCEEEEEEcCC----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 155 AFDPEGLIFGVGVNSD----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
+|+|++.++++++.++ ++++||+...... .........+...+.+++|+|+|++|++++.|+.|++||+++++++
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 8999999999998877 6888988653211 1112223345567899999999999999999999999999999988
Q ss_pred eee-cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 231 QTL-AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 231 ~~~-~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
..+ .+ |...|.+++|+|||++|||||.|++|+||++...
T Consensus 305 ~~~~~g---H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 305 KIFKQA---HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTS---SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEecCc---ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 775 34 5567899999999999999999999999998654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=250.18 Aligned_cols=244 Identities=21% Similarity=0.242 Sum_probs=191.9
Q ss_pred ccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecc---cccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 18 RENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSK---KYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 18 ~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+|.+.|.++.|+| ++.+|++|+.|++|++||++. .....+..+ ...+..++|+++.. .+++++.|+.|++||
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLG 191 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEE
Confidence 37999999999999 789999999999999999985 444444433 36689999998765 456667899999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCC----CCceeEEEecCCcceEEECC-CCCEEEEEE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRS----PNCQGIMHVSGSRPIAAFDP-EGLIFGVGV 167 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 167 (335)
+ +++.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+++ +.+.....+...+..+.|+| ++.++++++
T Consensus 192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 192 L-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp T-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred C-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence 9 5778889999999999999999998 999999999999999987 44555555566677889999 999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEecc----CCCc----------cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAA----EKEC----------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
.|+.|++||++...... .+.... .+.. .+..++|+|++++ +++.|+.|++||+.+++++..+
T Consensus 271 ~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp SSSEEEEEETTBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEECCCCcccc--ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 99999999998754321 111110 1111 1223455555555 5568999999999999998888
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
.++. +...+..++|+|++++|++|+ |+.|++||+++
T Consensus 347 ~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 347 RDPN-AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CBTT-BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCC-CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 7543 234455679999999999997 99999999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=239.47 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=197.5
Q ss_pred ccceeee--ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 11 YKVAKLF--RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 11 ~~~~~~~--~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.++.+.+ .+|.+.|++++|+|+|++||||+.||+|++||+++++....+.+|...+....+.. .++++++.++.
T Consensus 55 g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~----~~l~s~~~~~~ 130 (318)
T 4ggc_A 55 GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSGSRSGH 130 (318)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET----TEEEEEETTSE
T ss_pred CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC----CEEEEEecCCc
Confidence 3444555 57899999999999999999999999999999999999888888877766655433 25667778999
Q ss_pred EEEEEcCCC-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE--E---EecCCcceEEECCCC-C
Q psy16316 89 VRYLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI--M---HVSGSRPIAAFDPEG-L 161 (335)
Q Consensus 89 i~~~~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~--~---~~~~~~~~~~~~~~~-~ 161 (335)
+++|+.... ..+..+.+|...+..+.+.++++.|++++.|++|++||+++++.... . ...+.+....+.|.+ .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 210 (318)
T 4ggc_A 131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 210 (318)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT
T ss_pred eEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc
Confidence 999998765 56678899999999999999999999999999999999987654321 1 223334456667654 3
Q ss_pred EE--EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccc
Q psy16316 162 IF--GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 162 ~~--~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++ ++++.+++|++||.+.... .. .......+..+.|+|++..+++++ .|+.|++||+++++++.++.+|
T Consensus 211 ~~~~~~~~~~~~i~lwd~~~~~~--~~----~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH- 283 (318)
T 4ggc_A 211 VLATGGGTSDRHIRIWNVCSGAC--LS----AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH- 283 (318)
T ss_dssp EEEEEECTTTCEEEEEETTTCCE--EE----EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-
T ss_pred EEEEEecCCCCEEEEEecccccc--cc----cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-
Confidence 33 4566789999999876321 11 122344567899999999988765 6899999999999999988764
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
...|.+++|+|++++|||||.||+|+|||+.+
T Consensus 284 --~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 284 --TSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 56789999999999999999999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=263.71 Aligned_cols=248 Identities=10% Similarity=0.017 Sum_probs=193.3
Q ss_pred eeeccCCccEEEEEECCC------CCEEEEecCCCeEEEEEccCCcce-----------eeeecccccceEEEEecCCCe
Q psy16316 15 KLFRENTDKITSIDYSAD------GLLLISCSEDDQIVIYDCELGTNK-----------RTVFSKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~------g~~lasgs~Dg~i~lwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 77 (335)
.++.+|.+.|.+++|+|+ +.+|||||.||+|+|||+..+... ..+.+|...+.+++|.++.
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-- 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-- 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--
Confidence 456789999999999997 579999999999999999876432 2455677889999998642
Q ss_pred eEEeecCCCCeEEEEEcCCC-ceEeeecCCCCCeEEE--EECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE--ec-CC
Q psy16316 78 AIHASTKIDDTVRYLSLHDN-KYIRYFPGHTKKVNSL--CLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH--VS-GS 150 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~H~~~V~~~--~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~-~~ 150 (335)
.+++++.|++|++||+.++ .+...+.+|...|+++ .|+|++ .+|+|||.|++|++||++++++...+. .. ..
T Consensus 279 -~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 279 -TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp -EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred -eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 5778889999999999876 4456789999999999 567887 899999999999999999877655442 22 12
Q ss_pred cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC---
Q psy16316 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG--- 227 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~--- 227 (335)
+..++|+|++..+++++.|++|++||++.... ...+ ..+...+.+++|+|++++|++++.|++|++||+...
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~--~~~l---~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA--VHPL---VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTC--CEEE---EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECccccc--ceee---ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence 45688999999999999999999999986432 1222 235667899999999999999999999999985321
Q ss_pred --e---------eeeee---------------------------cccccCCCCceEEEEcCCCc---EEEEEeCCCcEEE
Q psy16316 228 --Q---------CLQTL---------------------------AGFLNNKGCPLEASFTPDSK---YVISGSTDGRIHI 266 (335)
Q Consensus 228 --~---------~~~~~---------------------------~~~~~~~~~v~~~~~sp~~~---~l~tgs~dg~v~i 266 (335)
+ .+..+ ....++...|.+++|+|+++ .+|+|+.||.|+|
T Consensus 433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 0 00000 01112445677899999964 9999999999999
Q ss_pred EECC
Q psy16316 267 WNAE 270 (335)
Q Consensus 267 wd~~ 270 (335)
|++.
T Consensus 513 w~l~ 516 (524)
T 2j04_B 513 EYLS 516 (524)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9975
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=250.29 Aligned_cols=283 Identities=12% Similarity=0.016 Sum_probs=218.9
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCc---ceeeeecc------------------------------------
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGT---NKRTVFSK------------------------------------ 62 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~~------------------------------------ 62 (335)
.+++++.|+|+|++|+++ .++.|++||+++++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999976665 57899999999988 44443321
Q ss_pred ------------------cccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeec--CCCCCeEEEEECCCCC
Q psy16316 63 ------------------KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFP--GHTKKVNSLCLSPIDD 120 (335)
Q Consensus 63 ------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~--~H~~~V~~~~~~~~~~ 120 (335)
...+..++|++++.. ++++++.|+.|++||+. +++.++.+. +|...|.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 125788899887654 34566679999999999 888888876 5678999999999999
Q ss_pred EEEEeeCCCcEEEeecCCCCcee-----EEEecCCcceEEECCC---CCEEEEEEcCCeEEEEEccCCCCCceeeEEecc
Q psy16316 121 TFISGSYDKTVRLWDLRSPNCQG-----IMHVSGSRPIAAFDPE---GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA 192 (335)
Q Consensus 121 ~l~s~s~D~~i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 192 (335)
+|++|+.|+.|++||+.++.... ...+...+..+.|+|+ +.++++|+.|++|++||++... ... ....
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~--~~~~ 238 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--IVD--KWLF 238 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--CEE--EECC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--eee--eeec
Confidence 99999999999999998766442 2334455677899999 9999999999999999997632 121 1233
Q ss_pred CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc----------------------cCCCCceEEEEcC
Q psy16316 193 EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL----------------------NNKGCPLEASFTP 250 (335)
Q Consensus 193 ~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~~~~sp 250 (335)
.+...+.+++|+ ++.+|++++.|+.|++||+.+++++..+..+. .....+..++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 456678999999 99999999999999999999999887775321 1234577899999
Q ss_pred CCcEEEEEe-CCCcEEEEEC--CCC---eeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--------eeEEeccccc
Q psy16316 251 DSKYVISGS-TDGRIHIWNA--EKG---FKVCVLDADHPSPVQTIQFNPKFNMMASACT--------NLAFWIPTYL 313 (335)
Q Consensus 251 ~~~~l~tgs-~dg~v~iwd~--~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--------~~~~w~~~~~ 313 (335)
++++|++++ .|+.|++|++ .++ .....+. .| +.|.+++|+|++.+++.++. .+.+|..+..
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999999 8999999999 554 4444554 35 79999999996444443331 2688876544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=258.19 Aligned_cols=265 Identities=11% Similarity=0.101 Sum_probs=202.1
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
+-...|.+|+|+|||+++||+|.|++|+ |.+.++.. .+|...+..++|+|++ .++++.+|+. +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~---~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA---Q 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC---C
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC---C
Confidence 4567899999999999999999999999 86666544 5788899999999875 2455555543 3
Q ss_pred eEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-----CcceEEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-----SRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
....+. +|...|.+++|+|+|.+|++++.||+|++||... +...+.+.. ....++|+|+|+++++|+.||+|
T Consensus 76 ~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 76 QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 222333 5688999999999999999999999999999543 222222111 35678999999999999999999
Q ss_pred EEEEccCCCCC-c----eeeEEe-ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee---eeecccccCCCCc
Q psy16316 173 KLYDVRSFDKG-P----FSNFKF-AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL---QTLAGFLNNKGCP 243 (335)
Q Consensus 173 ~iwd~~~~~~~-~----~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~~~~v 243 (335)
++||+...... + ...+.. ..++...+.+++|+|+| +++++.|+.|++||+..++.. +++.. .+...|
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~--~h~~~V 229 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN--ASRRKI 229 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--CCSSCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--cccCcE
Confidence 99999863210 1 122211 13455678999999999 788889999999999887632 34421 244568
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe--CCCCcEEEeee--ceeEEeccc
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF--NPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~--sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+++|+ ++.||+++ +++|++||...+...... .+|.+.|.+++| +|++..+++++ +. ++|..+
T Consensus 230 ~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 889999 68999998 699999999877664433 369999999999 99999999886 45 688754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=250.60 Aligned_cols=250 Identities=12% Similarity=0.136 Sum_probs=208.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccccc---------------ceEEEEecCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG---------------VDLIRFTHAK 75 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 75 (335)
.+....+.+|.+.|.++.|+|++++|++++.|+.|++||+.+++....+..+... +..+.|.++.
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence 4566788999999999999999999999999999999999999887776665555 7788888763
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceE
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIA 154 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~ 154 (335)
. +++++.|+.+++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+. +...+..+
T Consensus 219 ~---~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 295 (425)
T 1r5m_A 219 K---FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA 295 (425)
T ss_dssp E---EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEE
T ss_pred E---EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEE
Confidence 2 4556679999999999999999999999999999999999999999999999999999887766553 44556678
Q ss_pred EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe------
Q psy16316 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ------ 228 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~------ 228 (335)
.++|++ ++++++.|+.|++||++... .. .....+...+.+++|+|++++|++++.++.|++||+.+++
T Consensus 296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 369 (425)
T 1r5m_A 296 SWVGDD-KVISCSMDGSVRLWSLKQNT--LL---ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369 (425)
T ss_dssp EEETTT-EEEEEETTSEEEEEETTTTE--EE---EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred EECCCC-EEEEEeCCCcEEEEECCCCc--Ee---EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence 899999 99999999999999997632 12 2222345577899999999999999999999999998877
Q ss_pred --------------eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 229 --------------CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 229 --------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.+..+..+.. ...+.+++|+|++++|++|+.||.|++|++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 370 YGNRDGILNPLPIPLYASYQSSQD-NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTC-CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ecccccccCcccchhhhhhcCccc-CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 6666654321 1168899999999999999999999999974
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=252.92 Aligned_cols=255 Identities=17% Similarity=0.211 Sum_probs=208.6
Q ss_pred ceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCC-------cceeeeecccccceEEEEecCCCeeEEeecC
Q psy16316 13 VAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELG-------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
....+.+|.+.|++++|+| ++.+||+|+.||+|+|||+.++ +....+.+|...+..++|.+++. .++++++
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~ 151 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAG 151 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEE
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEc
Confidence 4456889999999999999 9999999999999999999987 55667778889999999998753 2455667
Q ss_pred CCCeEEEEEcCCCceEeee--cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE--ecCC-cceEEECCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYF--PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGS-RPIAAFDPE 159 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~-~~~~~~~~~ 159 (335)
.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++....+. +.+. ...+.|+|+
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 8999999999999999999 8999999999999999999999999999999999887766552 2222 456789999
Q ss_pred CCEEEEE---EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-EeCCCeEEEEECCCCee-eeeec
Q psy16316 160 GLIFGVG---VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTFDAYNGQC-LQTLA 234 (335)
Q Consensus 160 ~~~~~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~~~~i~i~d~~~~~~-~~~~~ 234 (335)
+.++++| +.++.|++||++.... +.... ...+...+..++|+|+++++++ ++.|+.|++||+.+++. +..+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEE-PLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSS-CSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccC-CceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999999 7899999999987432 12222 1233445788999999999975 45799999999998874 55555
Q ss_pred ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 235 ~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
.+. +...+.+++|+|++.++++ .++.+++|++.++..
T Consensus 309 ~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 544 4567889999999998875 466999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=239.17 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=208.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCC---
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID--- 86 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 86 (335)
..+..+.+.+|.+.|.++.|+|++++|++++.||+|++||+.+++....+. +...+..++|.+++...+. +..+
T Consensus 63 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~~~~~ 139 (369)
T 3zwl_B 63 NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA--ILDNVMK 139 (369)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE--EECCBTT
T ss_pred CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE--ecCCccC
Confidence 345677899999999999999999999999999999999999998877765 6778999999987665443 3345
Q ss_pred --CeEEEEEcCCCc-----------eEeeecCCCC--CeEEEEECCCCCEEEEeeCCCcEEEeecCC-CCceeEEE-ecC
Q psy16316 87 --DTVRYLSLHDNK-----------YIRYFPGHTK--KVNSLCLSPIDDTFISGSYDKTVRLWDLRS-PNCQGIMH-VSG 149 (335)
Q Consensus 87 --~~i~~~~~~~~~-----------~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-~~~~~~~~-~~~ 149 (335)
+.+++||+.... .+..+.+|.. .+.+++|+|+++.|++++.|+.|++||+++ ......+. +..
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 219 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK 219 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS
T ss_pred CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC
Confidence 999999997653 3445566766 999999999999999999999999999998 44444443 345
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC------------
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS------------ 217 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~------------ 217 (335)
.+..+.|+|++.++++++.|+.|++||++... ....+. ....+..++|+|++.++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 293 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE----CSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred ceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence 56678999999999999999999999998632 222222 345678899999999999999887
Q ss_pred --eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 218 --IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 218 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.+++||..+++.+..+.+ +...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 294 ~~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 294 KFEARFYHKIFEEEIGRVQG---HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -CEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cceeEEEecCCCcchhheec---ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 899999999988887765 4566889999999999999999999999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=258.41 Aligned_cols=251 Identities=17% Similarity=0.187 Sum_probs=185.5
Q ss_pred eeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecc--cccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 15 KLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..+.+|.+.|++|.|+| ++.+|+|||.||+|++||++++........+ ...+..++|++++. ++++++.|+.|++
T Consensus 158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~ 235 (435)
T 4e54_B 158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVIL 235 (435)
T ss_dssp ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEE
T ss_pred EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEee
Confidence 34679999999999998 6899999999999999999876443222222 23456788887654 5667778999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCCCCEEEEE
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 166 (335)
||+.. +.+..+.+|...|++++|+|+++ +|++|+.|++|++||+++.+....+ .+...+..++|+|++.+++++
T Consensus 236 wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 236 LNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp EESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred eccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 99864 56778899999999999999875 7889999999999999876644322 233445667899999999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEecc---CCCccceEEEEccCCCEEEEEe------------CCCeEEEEECCCCeeee
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAA---EKECDWTGIKFSADGKYILIST------------NGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~------------~~~~i~i~d~~~~~~~~ 231 (335)
+.|++|++||++.... ...+.... ..........|+|++.+++++. .++.|++||..+++.+.
T Consensus 315 ~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~ 392 (435)
T 4e54_B 315 DQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 392 (435)
T ss_dssp ESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred cCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence 9999999999986432 11111100 0111122356777777776654 34679999999999887
Q ss_pred eecccccCCCCceEE-EEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 232 TLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~-~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
.+... +...+.++ +|+|+|++||+|+ |++|+|||+.++.
T Consensus 393 ~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 393 QLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 76432 34455665 6999999999987 7899999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=244.67 Aligned_cols=285 Identities=17% Similarity=0.202 Sum_probs=194.1
Q ss_pred cCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCC-CeeEEeecCCCCeEEEEEcCC
Q psy16316 19 ENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK-QAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 19 ~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~ 96 (335)
+|.+.|.++.|+| ++.+|++|+.||+|++||+.+++....+. +...+..+.+.+.. ...++++++.|+.+++||+.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 6999999999999 77899999999999999999887766554 56667788887754 344667777899999999999
Q ss_pred CceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCc-eeEE----------------EecCCcceEEECC
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNC-QGIM----------------HVSGSRPIAAFDP 158 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~-~~~~----------------~~~~~~~~~~~~~ 158 (335)
++.+..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++... ...+ .+...+..+.|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999988 599999999999999987642 1111 1233455678999
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
++.++++++.|+.+++||+++...........................+..++.++.++.|++||+.+++.+..+.+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--- 332 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--- 332 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC---
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc---
Confidence 99999999999999999998643211110000000111111122233345566677889999999999998888765
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE-Eee--eceeEEeccc
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM-ASA--CTNLAFWIPT 311 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~-~s~--~~~~~~w~~~ 311 (335)
+...+.+++|+|++++|++|+.||.|++||+.++..+..... + -....+.|..... .++ ++.+++|..+
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE-T---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc-e---EeccccccccceeecccCccCceeecCCc
Confidence 446688999999999999999999999999988765543322 1 1223444433322 222 3568999654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=240.40 Aligned_cols=252 Identities=13% Similarity=0.189 Sum_probs=199.5
Q ss_pred ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCc
Q psy16316 55 NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKT 130 (335)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~ 130 (335)
....+.+|...|..++|++++. .+++++.|+.|++|++. +.+.+..+.+|...|++++|+++ +++|++|+.|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK--RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccEEecCCcccEEEEEEcCCCC--EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 3456678899999999998765 45666679999999998 66778889999999999999987 899999999999
Q ss_pred EEEeecCCCCcee--EE-EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc
Q psy16316 131 VRLWDLRSPNCQG--IM-HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 131 i~vWd~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (335)
|++||+.+++... .. .+...+..+.|+|+ +.++++++.|+.|++||++......... ...+...+.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcC
Confidence 9999999876322 22 23445667889999 9999999999999999998643222221 223456788999999
Q ss_pred -------------CCCEEEEEeCCCeEEEEECCCCeeeeee-cccccCCCCceEEEEcCC---CcEEEEEeCCCcEEEEE
Q psy16316 206 -------------DGKYILISTNGSIIRTFDAYNGQCLQTL-AGFLNNKGCPLEASFTPD---SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 206 -------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~sp~---~~~l~tgs~dg~v~iwd 268 (335)
++.++++++.|+.|++||+++++....+ .....|...+.+++|+|+ +++|++++.||.|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999999999999999876533211 222345667889999999 89999999999999999
Q ss_pred CCCCe----eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 269 AEKGF----KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 269 ~~~~~----~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+.++. ........|...|++++|+|+++++++++ +.+++|..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 98763 22222344889999999999999999876 569999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=238.69 Aligned_cols=254 Identities=15% Similarity=0.148 Sum_probs=199.6
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee--ecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV--FSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+..+.+.+|.+.|+++.|+|+|++|++|+.||+|++||+++++..... ..+...+..++|.+++. .+++++.|+.+
T Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v 120 (372)
T 1k8k_C 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVI 120 (372)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSE
T ss_pred EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEE
Confidence 367788999999999999999999999999999999999888754433 55777899999998764 45556679999
Q ss_pred EEEEcCCCce----EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC------------------CCCceeEE-E
Q psy16316 90 RYLSLHDNKY----IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR------------------SPNCQGIM-H 146 (335)
Q Consensus 90 ~~~~~~~~~~----~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~------------------~~~~~~~~-~ 146 (335)
++||+..+.. .....+|...|.+++|+|++++|++++.|+.|++||++ .+.+...+ .
T Consensus 121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
T 1k8k_C 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200 (372)
T ss_dssp EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence 9999988762 33447899999999999999999999999999999964 33333333 2
Q ss_pred ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy16316 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+...+..+.|+|++.++++++.|+.|++||++... ....+ ..+...+.+++|+|++.+++++ .++.|++|++.+
T Consensus 201 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 201 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AVATL---ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--EEEEE---ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eeEEE---ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 33445678899999999999999999999998642 22222 2344567899999999988887 899999999987
Q ss_pred --Ce--eeeee---------------------------------cc-cccCCCCceEEEEc-CCC---cEEEEEeCCCcE
Q psy16316 227 --GQ--CLQTL---------------------------------AG-FLNNKGCPLEASFT-PDS---KYVISGSTDGRI 264 (335)
Q Consensus 227 --~~--~~~~~---------------------------------~~-~~~~~~~v~~~~~s-p~~---~~l~tgs~dg~v 264 (335)
++ +...+ .. ...|...|.+++|+ ++| ++|+||+.||.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 42 11000 11 12466778899866 676 999999999999
Q ss_pred EEEECCCCe
Q psy16316 265 HIWNAEKGF 273 (335)
Q Consensus 265 ~iwd~~~~~ 273 (335)
++|++.++.
T Consensus 355 ~~W~~~~~~ 363 (372)
T 1k8k_C 355 SIWDVRSLE 363 (372)
T ss_dssp EEEEHHHHH
T ss_pred EEEEecChh
Confidence 999986543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=247.48 Aligned_cols=247 Identities=13% Similarity=0.123 Sum_probs=192.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEcc---CCcceeeeec------------ccccceEEEEecCCCeeEEeec
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCE---LGTNKRTVFS------------KKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~---~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
+|.+.|++++|+|++.+|++|+.||+|++||++ .++....... +...+..+.+....+...++++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 599999999999999999999999999999995 4544332221 1223344444444556677888
Q ss_pred CCCCeEEEEEcCCCceEeeecC--CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC--cceEE----
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPG--HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS--RPIAA---- 155 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~--~~~~~---- 155 (335)
+.|+.|++||+.+++.+..+.+ |...|++++|+|++++|++|+.|++|++||++++++...+...+. +..+.
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 8899999999999999999998 899999999999999999999999999999998877665543333 33453
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec---------------------c--CCCccceEEEEccCCCEEEE
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA---------------------A--EKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~---------------------~--~~~~~~~~~~~s~~~~~l~~ 212 (335)
+++++.++++|+.|++|++||+++.. ....+... . .+...+.+++|+ ++++|++
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 34578899999999999999997532 11111100 0 134457889999 7899999
Q ss_pred EeCCCeEEEEECCCCeeeeeecccc----------------------------------cCCCCceEEEEcCC--CcEEE
Q psy16316 213 STNGSIIRTFDAYNGQCLQTLAGFL----------------------------------NNKGCPLEASFTPD--SKYVI 256 (335)
Q Consensus 213 ~~~~~~i~i~d~~~~~~~~~~~~~~----------------------------------~~~~~v~~~~~sp~--~~~l~ 256 (335)
++.|+.|++||+.++++...+.++. .|...|.+++|+++ +.+|+
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV 425 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence 9999999999999988777766531 15667889999998 78999
Q ss_pred EEeCCCcEEEEE
Q psy16316 257 SGSTDGRIHIWN 268 (335)
Q Consensus 257 tgs~dg~v~iwd 268 (335)
+|+.||.|+||+
T Consensus 426 s~~~dG~I~iw~ 437 (437)
T 3gre_A 426 ACDNSGLIGIFQ 437 (437)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCceEEEeC
Confidence 999999999995
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=249.48 Aligned_cols=241 Identities=12% Similarity=0.159 Sum_probs=185.7
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
+...|.+++|++++. .+++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 10 ~~~~v~~~~~s~~g~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT--EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECSSSS--EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCCcEEEEEECCCCC--EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 456789999998655 5677778999999999988 788889999999999999999999999999999999999887
Q ss_pred C---cee-EEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 140 N---CQG-IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 140 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
. ... ...+...+..+.|+|++.++++++.|++|++||++........ ......+...+.+++|+|++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS-KHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC-EEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee-eEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 6 222 2234455667899999999999999999999999864311011 1112225667899999999999999999
Q ss_pred CCeEEEEECCC------------------CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee---
Q psy16316 216 GSIIRTFDAYN------------------GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK--- 274 (335)
Q Consensus 216 ~~~i~i~d~~~------------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~--- 274 (335)
|+.|++||++. +++...+ .+...+.+++|+|++++|++|+.|+.|++||+.++..
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 99999999853 3333333 4667789999999999999999999999999988765
Q ss_pred -EEEeCCCCCCCeEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 275 -VCVLDADHPSPVQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 275 -~~~~~~~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
...+ ..|..+|.+++|+|++.++++++. .+.+|..
T Consensus 243 ~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 243 ALITV-KLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp ECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred eeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 3444 358899999999999999999864 3556644
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-31 Score=240.41 Aligned_cols=285 Identities=14% Similarity=0.135 Sum_probs=223.1
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee-----eecccccceEEEEecCCCeeEEeecCCC
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-----VFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+....+..+.. +.+++|+|++.++++++.|++|++||+++++.... ...|...+..++|.+++ .++++++.|
T Consensus 114 ~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGFQ-PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSSC-BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGG
T ss_pred eEEEEEcCCCC-ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCC
Confidence 44455555544 56999999888999999999999999999887653 23455678888886654 456677789
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+.+++||+.+++.+..+.+|...+.+++|+|+++.+ ++++.|+.|++||+++++....+........++++|++..+++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE
Confidence 999999999999999999999999999999999877 4555899999999998776555444444566789999998888
Q ss_pred EE--------cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEE-EEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 166 GV--------NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 166 ~~--------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
++ .|+.|++||+++.. ..... .....+.+++|+|+++.++ +++.++.|++||+.+++....+.
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-- 342 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEK--LIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-- 342 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTE--EEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred EECCCCccccCCCeEEEEECCCCc--EEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--
Confidence 87 47899999997532 11111 1122456799999998665 55789999999999998777664
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeC---------------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGST---------------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~---------------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+..++|+|++++|++++. ||.|++||..++.....+.. ...+..++|+|++++++++
T Consensus 343 --~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 343 --VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp --CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEE
T ss_pred --CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEE
Confidence 2345788999999999888876 57999999999887776653 4578999999999988766
Q ss_pred e---ceeEEeccc
Q psy16316 302 C---TNLAFWIPT 311 (335)
Q Consensus 302 ~---~~~~~w~~~ 311 (335)
+ +.+++|.++
T Consensus 419 ~~~d~~i~v~~~~ 431 (433)
T 3bws_A 419 DFLDHQIRVYRRD 431 (433)
T ss_dssp ETTTTEEEEEEET
T ss_pred ECCCCeEEEEEec
Confidence 3 578999753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=245.22 Aligned_cols=260 Identities=21% Similarity=0.325 Sum_probs=194.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+....+.+|.+.|.++.| ++.+|++|+.||+|++||+++++....+..|...+..++|.+. .+++++.|+.+
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i 235 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG----MMVTCSKDRSI 235 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT----EEEEEETTSCE
T ss_pred CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC----EEEEeeCCCcE
Confidence 34566789999999999998 7899999999999999999999998888888888999988632 56777789999
Q ss_pred EEEEcCCCceE---eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEE
Q psy16316 90 RYLSLHDNKYI---RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 90 ~~~~~~~~~~~---~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (335)
++||+.++... ..+.+|...|.++++ +++.+++|+.|++|++||++++++...+. +...+..+. .++.++++
T Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~ 311 (435)
T 1p22_A 236 AVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVS 311 (435)
T ss_dssp EEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE--EETTEEEE
T ss_pred EEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEE--eCCCEEEE
Confidence 99999887655 678899999999999 67899999999999999999988776553 223333334 46789999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe---------eeeeeccc
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ---------CLQTLAGF 236 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~ 236 (335)
|+.|++|++||+++.. ... ....+...+.+++| ++.++++++.|+.|++||+.+++ ++..+.+
T Consensus 312 g~~dg~i~iwd~~~~~--~~~---~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~- 383 (435)
T 1p22_A 312 GSSDNTIRLWDIECGA--CLR---VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE- 383 (435)
T ss_dssp EETTSCEEEEETTTCC--EEE---EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-
T ss_pred EeCCCeEEEEECCCCC--EEE---EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-
Confidence 9999999999998632 222 22334556777877 78899999999999999987665 5666654
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
+...+.+++| ++++|++|+.||.|++||+.+........ ...+...+.|.+
T Consensus 384 --h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~ 434 (435)
T 1p22_A 384 --HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP--PRSPSRTYTYIS 434 (435)
T ss_dssp --CSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------------
T ss_pred --CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC--CCCCccceeeec
Confidence 4456777888 77899999999999999998765443332 234556666654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=232.47 Aligned_cols=246 Identities=19% Similarity=0.206 Sum_probs=199.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC---cceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG---TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.+....+..|.+.|.++.|+|++.+|++|+.||.+++||+... +....+..|...+..+.|. + ..+++++.|+
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~l~~~~~d~ 124 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D--GVVISGSWDK 124 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T--TEEEEEETTS
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C--CEEEEEeCCC
Confidence 3456778899999999999999999999999999999998765 3455666778888888883 2 2566777899
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCCEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 164 (335)
.+++|| .++....+.+|...|.++.++| +++.+++++.|+.|++||.. .....+. .......+.++|++. ++
T Consensus 125 ~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~ 199 (313)
T 3odt_A 125 TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FI 199 (313)
T ss_dssp EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EE
T ss_pred CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EE
Confidence 999999 7778888999999999999988 88999999999999999943 2333332 344556778899888 88
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+++.++.|++||++... ....+ ..+...+.+++|+|++ .+++++.|+.|++||+.+++....+..+ ...+.
T Consensus 200 ~~~~dg~i~i~d~~~~~--~~~~~---~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~i~ 270 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGD--VLRTY---EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP---AISIW 270 (313)
T ss_dssp EEETTSEEEEEETTTCC--EEEEE---ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS---SSCEE
T ss_pred EccCCCeEEEEECCchh--hhhhh---hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc---CceEE
Confidence 99999999999998632 22222 2345678899999999 5889999999999999999988877653 45688
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
+++|+|+++ +++++.||.|++||+.++...
T Consensus 271 ~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 271 SVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 999999998 667999999999999876543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=241.46 Aligned_cols=253 Identities=16% Similarity=0.259 Sum_probs=193.6
Q ss_pred cccceeeeccCC------------ccEEEEEECCCC--CEEEEecCCCeEEEEEccCCcce-------------------
Q psy16316 10 SYKVAKLFRENT------------DKITSIDYSADG--LLLISCSEDDQIVIYDCELGTNK------------------- 56 (335)
Q Consensus 10 ~~~~~~~~~~h~------------~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~~~~~~------------------- 56 (335)
.|++...+++|. +.|+++.|+|++ .+|++|+.|++|++||+.++...
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~ 149 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV 149 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence 355678899998 889999999998 89999999999999999764431
Q ss_pred --------------------ee-eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEe-------eecCCC
Q psy16316 57 --------------------RT-VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIR-------YFPGHT 107 (335)
Q Consensus 57 --------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~-------~~~~H~ 107 (335)
+. ...|...+..++|++++. .++++ .|+.|++||+.. ++.+. .+.+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (447)
T 3dw8_B 150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT 226 (447)
T ss_dssp CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccC
Confidence 11 245778899999998755 34445 699999999984 44444 367899
Q ss_pred CCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCc----eeEEEecC-------------CcceEEECCCCCEEEEEEcC
Q psy16316 108 KKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNC----QGIMHVSG-------------SRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 108 ~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~d 169 (335)
..|.+++|+|++ ++|++|+.|++|++||+++++. ...+.... .+..+.|+|++.++++++.
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~- 305 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY- 305 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-
T ss_pred cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-
Confidence 999999999998 9999999999999999998775 33332221 5667899999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCc------------cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKEC------------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF- 236 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~- 236 (335)
+.|++||++... .+...+........ .+..++|+|++++|++++.|+.|++||+.+++.+. +..+
T Consensus 306 ~~v~iwd~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~ 383 (447)
T 3dw8_B 306 LSVKVWDLNMEN-RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASR 383 (447)
T ss_dssp SEEEEEETTCCS-SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCS
T ss_pred CeEEEEeCCCCc-cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecc
Confidence 999999998521 22222222111000 12248999999999999999999999999887653 2211
Q ss_pred -----------------------------ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 237 -----------------------------LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 237 -----------------------------~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
......+..++|+|++++||+++.++ +++|..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 12234577899999999999999886 888874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=241.82 Aligned_cols=252 Identities=14% Similarity=0.222 Sum_probs=201.2
Q ss_pred eeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccC----------CcceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 15 KLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCEL----------GTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
....+|.+.|++++|+|+ +.+||+|+.||+|++||+.. ......+..|...+..++|.+.... .++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 345689999999999997 68999999999999999987 4556677788889999999987653 45667
Q ss_pred CCCCeEEEEEcCCCce-------EeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCC---ceeEE-EecCCc
Q psy16316 84 KIDDTVRYLSLHDNKY-------IRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPN---CQGIM-HVSGSR 151 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~-------~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~---~~~~~-~~~~~~ 151 (335)
+.|+.|++|++..+.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++. ....+ .+...+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 7899999999987322 456779999999999999 67899999999999999999763 33333 334556
Q ss_pred ceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee
Q psy16316 152 PIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~ 229 (335)
..+.|+|++. ++++|+.|++|++||++... .+...+. .+...+.+++|+|+++ ++++++.|+.|++||+.....
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 7789999886 78999999999999998643 2233222 3456788999999995 688899999999999987221
Q ss_pred e-----------eeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 230 L-----------QTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 230 ~-----------~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
. ..+..+..+...+.+++|+|+++ +|++++.||.|++|++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 0 12223344566789999999999 999999999999999864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=240.05 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred cEEEEEE---CCCCCEEEEecCCCeEEEEEccCCcc-------eee--eecccccceEEEEec-----------------
Q psy16316 23 KITSIDY---SADGLLLISCSEDDQIVIYDCELGTN-------KRT--VFSKKYGVDLIRFTH----------------- 73 (335)
Q Consensus 23 ~V~~v~~---s~~g~~lasgs~Dg~i~lwd~~~~~~-------~~~--~~~~~~~~~~~~~~~----------------- 73 (335)
...++.| +|++..|+.++.|+.|++|+...... ... ...+...+..+.+.+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 4556666 45555566666788999998643211 011 111222333333321
Q ss_pred -CCCeeEEeecCCCCeEEEEEcCCCceE-----eeecCCCCCeEEEEECC--------CCCEEEEeeCCCcEEEeecCCC
Q psy16316 74 -AKQAAIHASTKIDDTVRYLSLHDNKYI-----RYFPGHTKKVNSLCLSP--------IDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 74 -~~~~~~~~~~~~d~~i~~~~~~~~~~~-----~~~~~H~~~V~~~~~~~--------~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
.....++++++.|++|++||+..+... ..++||.+.|++++|+| ++++|+|||.|++||+||++++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 112346788889999999999887543 35789999999999997 7889999999999999999876
Q ss_pred Ccee-EEEecCCcceEEECCCC-CEEEEEEcCCeEEEEEccCCCCCceee------------EE--------eccCCCcc
Q psy16316 140 NCQG-IMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSN------------FK--------FAAEKECD 197 (335)
Q Consensus 140 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~------------~~--------~~~~~~~~ 197 (335)
.+.. ...+......++|+|++ .++++++.|++|++||++......... .. ....+...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 6543 33455556678899987 589999999999999998643211000 00 01122334
Q ss_pred ceEEEEc-cCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC---------------CCCceEEEEcC--CCcEEEEEe
Q psy16316 198 WTGIKFS-ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN---------------KGCPLEASFTP--DSKYVISGS 259 (335)
Q Consensus 198 ~~~~~~s-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---------------~~~v~~~~~sp--~~~~l~tgs 259 (335)
+..+.|+ |+++.+++++.|+.+++||+..++....+..+... ........|+| ++.++++|+
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 5667775 89999999999999999999877665544332211 11122344554 445788899
Q ss_pred CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
.||+|++||..++...... ..|..+|++|+|||+|++||+++. .+.+|.+
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~-~~~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIP-IQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp TTTEEEEEETTCTTCCEEE-EECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 9999999999988766554 357889999999999999999974 4555543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=228.70 Aligned_cols=248 Identities=19% Similarity=0.249 Sum_probs=195.1
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceEeeecCCCCCeEEEEECC--CCCEEEEeeCCCcEE
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVR 132 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~i~ 132 (335)
+.+|...|..++|++++. .+++++.|+.|++||+.++ +....+.+|...|.+++|+| ++++|++|+.|++|+
T Consensus 7 ~~gH~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR--HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp ECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred CcccccceeEEEEcCCCC--EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456888999999998655 4566778999999999876 46777889999999999999 589999999999999
Q ss_pred EeecCCCCc---------eeEE-EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEe--------cc
Q psy16316 133 LWDLRSPNC---------QGIM-HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF--------AA 192 (335)
Q Consensus 133 vWd~~~~~~---------~~~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--------~~ 192 (335)
+||++++.. ...+ .+...+..+.|+|+ +.++++++.|+.|++||++............ ..
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999987632 2222 23445567889999 9999999999999999998754322111110 11
Q ss_pred CCCccceEEEEccC---CCEEEEEeCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCCC----cEEEEEeCCCc
Q psy16316 193 EKECDWTGIKFSAD---GKYILISTNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDS----KYVISGSTDGR 263 (335)
Q Consensus 193 ~~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~----~~l~tgs~dg~ 263 (335)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. ...+ ..+...+.+++|+|++ ++|++|+.||.
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL---PGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC---CCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec---CCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 33456788999997 99999999999998888777654 3333 3456678999999998 89999999999
Q ss_pred EEEEECCCC----------------------------------------------eeEEEeCCCCCCCeEEEEeCCCCcE
Q psy16316 264 IHIWNAEKG----------------------------------------------FKVCVLDADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 264 v~iwd~~~~----------------------------------------------~~~~~~~~~h~~~v~~v~~sp~~~~ 297 (335)
|++||+..+ .....+ .+|.++|++++|+|++++
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCC
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCE
Confidence 999998764 233334 469999999999999999
Q ss_pred EEeee--ceeEEecccc
Q psy16316 298 MASAC--TNLAFWIPTY 312 (335)
Q Consensus 298 ~~s~~--~~~~~w~~~~ 312 (335)
|++++ +.+++|..+.
T Consensus 321 l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEETTSCEEEEEECT
T ss_pred EEEecCCCcEEEEecCc
Confidence 99997 5699998654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-30 Score=234.18 Aligned_cols=292 Identities=17% Similarity=0.288 Sum_probs=217.3
Q ss_pred cEEEEEECCCC----------CEEEEecC----CCeEEEEEccC--------------------------Ccc-eeeeec
Q psy16316 23 KITSIDYSADG----------LLLISCSE----DDQIVIYDCEL--------------------------GTN-KRTVFS 61 (335)
Q Consensus 23 ~V~~v~~s~~g----------~~lasgs~----Dg~i~lwd~~~--------------------------~~~-~~~~~~ 61 (335)
+..++.|.|+. .+|+.|+. ...|.+.++.. ++. ......
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45788888865 45777664 45677776531 111 133456
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC----------CceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCc
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----------NKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKT 130 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----------~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~ 130 (335)
|...+..++|.+. ...++++++.|+.|++|++.. .+.+..+.+|...|.+++|+|++. +|++|+.||+
T Consensus 127 h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 127 HEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp ESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred CCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 7788999999985 245677778899999999987 567788899999999999999988 9999999999
Q ss_pred EEEeecCCCCce-------eEE-EecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCC-CceeeEEeccCCCccceE
Q psy16316 131 VRLWDLRSPNCQ-------GIM-HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTG 200 (335)
Q Consensus 131 i~vWd~~~~~~~-------~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 200 (335)
|++||+..+... ..+ .+...+..+.|+| ++.++++++.|+.|++||++.... .+...+ ..+...+++
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~ 282 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNC 282 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE---ECCSSCEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe---ecCCCCeEE
Confidence 999999874321 111 2334456788999 788999999999999999986421 222222 234567899
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEECCC-CeeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC------
Q psy16316 201 IKFSADGK-YILISTNGSIIRTFDAYN-GQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK------ 271 (335)
Q Consensus 201 ~~~s~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~------ 271 (335)
++|+|++. ++++++.++.|++||+++ .+.+..+.. +...+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 99999997 688999999999999997 445555544 456788999999985 799999999999999876
Q ss_pred --------CeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee--ceeEEecccccccccCCCCc
Q psy16316 272 --------GFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--TNLAFWIPTYLSNHQEPDTI 322 (335)
Q Consensus 272 --------~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--~~~~~w~~~~~~~~~~~~~~ 322 (335)
...+. ...+|...|++++|+|+++ ++++++ +.+++|.++...-.+....+
T Consensus 360 ~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 420 (430)
T 2xyi_A 360 TEDAEDGPPELLF-IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEI 420 (430)
T ss_dssp HHHHHHCCTTEEE-ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHCC-----
T ss_pred ccccccCCcceEE-EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccccCCCccC
Confidence 23333 3467999999999999998 888876 56899987443333333333
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-29 Score=225.00 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=204.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEE-EEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.++.+.+.+|.. +.++.|+|+|++| ++++.|++|++||+++++....+..+. .+..++|++++... ++++..++.|
T Consensus 22 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l-~~~~~~~~~v 98 (391)
T 1l0q_A 22 NKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQV-YVTNMASSTL 98 (391)
T ss_dssp TEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEE-EEEETTTTEE
T ss_pred CeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEE-EEEECCCCEE
Confidence 455667777765 8999999999976 788899999999999998877765544 88899999876644 3445568999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 167 (335)
++||+.+++.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+++....+........+.++|++..+ +++.
T Consensus 99 ~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp EEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC
Confidence 99999999988888755 468999999999877 78889999999999988877666555555678899999876 6677
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe---CCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST---NGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
.++.|++||++... ....+ .....+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.
T Consensus 178 ~~~~v~~~d~~~~~--~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~ 247 (391)
T 1l0q_A 178 DSMSISVIDTVTNS--VIDTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG----PDPA 247 (391)
T ss_dssp TTTEEEEEETTTTE--EEEEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC----SSEE
T ss_pred CCCEEEEEECCCCe--EEEEE----ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC----CCcc
Confidence 88999999997632 11111 1233567899999999999887 6899999999999887776543 2367
Q ss_pred EEEEcCCCcEE-EEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 245 EASFTPDSKYV-ISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 245 ~~~~sp~~~~l-~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
.++|+|++++| ++++.|+.|++||+.++.....+.
T Consensus 248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 248 GIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 89999999877 777899999999999988776654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=225.31 Aligned_cols=181 Identities=13% Similarity=0.208 Sum_probs=136.7
Q ss_pred cCCCCeEEEEEc-CCCceEeeecCCCCCeEEEEECC---CCCEEEEeeCCCcEEEeecCCCCceeEEEecC----CcceE
Q psy16316 83 TKIDDTVRYLSL-HDNKYIRYFPGHTKKVNSLCLSP---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG----SRPIA 154 (335)
Q Consensus 83 ~~~d~~i~~~~~-~~~~~~~~~~~H~~~V~~~~~~~---~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~----~~~~~ 154 (335)
.+.|+.|++|++ ..++.+..+.+|...+..++|++ ++..|+|||.|++||+||++++++...+...+ ....+
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEE
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEE
Confidence 457999999999 45888889999999999999999 67999999999999999999999888774221 23345
Q ss_pred EECCCCCEE------------EEEEcCCeEEEEEccCCCCCceeeEE--eccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 155 AFDPEGLIF------------GVGVNSDTIKLYDVRSFDKGPFSNFK--FAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 155 ~~~~~~~~~------------~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
+|+|+|.++ ++|+.|+++++||..+.. ....+. +...+...+ +..+.++.++++++.|++|+
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~DgTIk 308 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSGTIA 308 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCE--EEEEEETTEEEEEETTSCEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCccee--EccccCCCEEEEEcCCCcEE
Confidence 789998876 567889999999987532 111111 111222222 33344477899999999999
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+||+.+++++.++.+|... .+..++|||||++|++|+.|++|+|||.
T Consensus 309 IWDl~tGk~l~tL~gH~~~--vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 309 IWDLLLGQCTALLPPVSDQ--HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTTCSEEEEECCC--C--CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCcEEEEecCCCCC--eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999998765432 2335899999999999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=234.80 Aligned_cols=246 Identities=11% Similarity=0.000 Sum_probs=170.8
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee-----eeecccccceEEEEecC------CCeeEEeecCCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR-----TVFSKKYGVDLIRFTHA------KQAAIHASTKIDD 87 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~ 87 (335)
.|...+....+++++.+||+|+.|++|+|||.++++... .+.+|...|..++|+|. .+..++++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 345555555566778899999999999999999886543 24568889999999862 2456889999999
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE--------------------
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH-------------------- 146 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~-------------------- 146 (335)
++++||+.++..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++......
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999999988888888899999999999987 489999999999999998765432110
Q ss_pred ------ecCCcceEE-ECCCCCEEEEEEcCCeEEEEEccCCCCCceee--------------EEeccCCCccceEEEEcc
Q psy16316 147 ------VSGSRPIAA-FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN--------------FKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 147 ------~~~~~~~~~-~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~ 205 (335)
+......+. ..+++..+++++.|+++++||+.......... .......... ....++|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL-LGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS-SCCEECS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc-eeEEEcc
Confidence 011122333 45899999999999999999987532110000 0000000111 1233433
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 206 --DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 206 --~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
++.++++++.|+.|++||+.++++...+.+ +...|.+++|+|||++||+++.|| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 334566778899999999999987776654 445789999999999999999877 666654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=243.40 Aligned_cols=244 Identities=9% Similarity=0.068 Sum_probs=192.1
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccc-----cceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-----GVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.|.+.|.+++|||+|++||+++.||+++|||.+. +...+. +.. .+..++|+|++. .+++++.|++|++||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEE
Confidence 6789999999999999999999999999999654 444444 443 488999998766 456677899999999
Q ss_pred cCCCce-------Eeee----cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce---eEE--EecCCcceEEEC
Q psy16316 94 LHDNKY-------IRYF----PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ---GIM--HVSGSRPIAAFD 157 (335)
Q Consensus 94 ~~~~~~-------~~~~----~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~---~~~--~~~~~~~~~~~~ 157 (335)
+.+++. +.++ .||.+.|.+++|+|+| +++++.|++|++||+..+... ..+ .+...+..++|+
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 998853 5666 7888999999999998 889999999999999887743 223 223345667787
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEE--ccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKF--SADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
+..+++++ +++|++||+.... ...+ ..++...+..++| +|++..++++..+|+ ++|...
T Consensus 236 --g~~LASa~-~~tIkLWd~~~~~---~~~~--~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------- 296 (588)
T 2j04_A 236 --DYKVVLTC-PGYVHKIDLKNYS---ISSL--KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------- 296 (588)
T ss_dssp --TTEEEEEC-SSEEEEEETTTTE---EEEE--ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------
T ss_pred --CCEEEEEe-CCeEEEEECCCCe---EEEE--EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------
Confidence 58888887 5999999987521 2122 2246677889999 999999999999999 999876
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.++|+||+..+++. |+++++|+...+. ...+ .+...|.+++|||+|+++|+++
T Consensus 297 ---------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~--~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ---------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY--ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS--CCEEEEEEEEECTTSSEEEEEE
T ss_pred ---------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee--ccceEEEEEEECCCCCEEEEEE
Confidence 15699999888775 9999999975443 2122 2355799999999999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=219.34 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=207.9
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEE
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL 113 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~ 113 (335)
.++++++.|++|++||+++++....+..+ ..+..++|++++... +++++.|+.+++||+.+++.+..+..|. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l-~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKV-YVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEE-EEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEE-EEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 47899999999999999999887776654 357889998876643 3455578999999999999998888665 89999
Q ss_pred EECCCCCEEE-EeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEEcCCeEEEEEccCCCCCceeeEEec
Q psy16316 114 CLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGVNSDTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 114 ~~~~~~~~l~-s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
+|+|+++.|+ +++.|+.|++||+.+++....+........++++|+++.+ ++++.++.|++||+++.+ ....+.
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~-- 155 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVS-- 155 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE--
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEe--
Confidence 9999999774 5567899999999998877666655556678899999866 678889999999997532 122111
Q ss_pred cCCCccceEEEEccCCCEE-EEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe---CCCcEEEE
Q psy16316 192 AEKECDWTGIKFSADGKYI-LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS---TDGRIHIW 267 (335)
Q Consensus 192 ~~~~~~~~~~~~s~~~~~l-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs---~dg~v~iw 267 (335)
....+..++|+|+++++ +++..++.|++||+.++++...+.. ...+..++|+|++++|++++ .++.|++|
T Consensus 156 --~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 156 --VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp --CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred --cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec----CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 12345789999999988 4567789999999999987766642 33567899999999998888 68999999
Q ss_pred ECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE-Eeee--ceeEEeccc
Q psy16316 268 NAEKGFKVCVLDADHPSPVQTIQFNPKFNMM-ASAC--TNLAFWIPT 311 (335)
Q Consensus 268 d~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~-~s~~--~~~~~w~~~ 311 (335)
|+.++.....+.. |. .+.+++|+|+++++ ++++ +.+++|.+.
T Consensus 230 d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 230 DTGTNKITARIPV-GP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ETTTTEEEEEEEC-CS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ECCCCeEEEEEec-CC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 9998887777654 43 57899999999876 4543 578888763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=222.30 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=196.3
Q ss_pred eeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEc-cCCcceeeeec--ccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDC-ELGTNKRTVFS--KKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+.+.+|.+.|+++.|+|+++ +|++|+.||+|++||+ +++.. ..+.. |...+..++|.+ .. .+++++.|+.+
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i 124 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD--KLIAASWDGLI 124 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeE
Confidence 455669999999999999999 9999999999999999 77754 55666 888899999998 33 45566789999
Q ss_pred EEEEcCC---------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-CCceeE-E--EecCCcceEEE
Q psy16316 90 RYLSLHD---------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-PNCQGI-M--HVSGSRPIAAF 156 (335)
Q Consensus 90 ~~~~~~~---------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-~~~~~~-~--~~~~~~~~~~~ 156 (335)
++||+.+ ++++..+. |...|.+++|+|++ +++++.|+.|++||+++ +..... . ........+.+
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 125 EVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp EEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred EEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 9999988 77777777 89999999999976 99999999999999988 554322 1 23344567889
Q ss_pred CC-CCCEEEEEEcCCeEEEEEccCCC----CCceeeEEeccC------CCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 157 DP-EGLIFGVGVNSDTIKLYDVRSFD----KGPFSNFKFAAE------KECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 157 ~~-~~~~~~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
+| ++.++++++.++.+++|+++... ......+..... +...+.+++|+|++++|++++.++.|++||+.
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 99 99999999999999999997640 122233322211 13368899999999999999999999999999
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-EEEEE
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-IHIWN 268 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-v~iwd 268 (335)
+++++..+.++ |...+.+++ |++++|++|+.||. .+.|.
T Consensus 282 ~~~~~~~~~~~--h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 282 TRKKIKNFAKF--NEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTEEEEECCCC--SSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cHhHhhhhhcc--cCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99988887654 145567777 99999999999998 55555
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=222.51 Aligned_cols=248 Identities=11% Similarity=0.068 Sum_probs=191.9
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
+.+.+|.+.|+++.|+|++++|++|+.||+|++||+++++... ...|...+..++|.+..+...+++++.|+.+++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 6788999999999999999999999999999999999887665 566888899999966666667778888999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCC----EEEEEE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGL----IFGVGV 167 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~ 167 (335)
.+++.+..+..|. .+.++.+.+ ..++.++.|+.+++||++......... ......+..+.++.. .+++++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 9999998888765 566666654 588999999999999998754332211 112223344433332 389999
Q ss_pred cCCeEEEEEccCCCC-CceeeEEeccC---------CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 168 NSDTIKLYDVRSFDK-GPFSNFKFAAE---------KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
.|+.+++||++.... .....+..... +...+.+++|+|++++|++++.|+.|++||+.+++++..+.+
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 313 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-- 313 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC--
Confidence 999999999986421 11122211110 011578999999999999999999999999999998887765
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+...+.+++|+|++++|++|+.|+..+.|+.
T Consensus 314 -~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 -LDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -CSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred -CCCCceEEEECCCCCeEEEEecccccccccc
Confidence 4567889999999999999999986555543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=246.04 Aligned_cols=247 Identities=13% Similarity=0.203 Sum_probs=195.3
Q ss_pred eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEE
Q psy16316 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRL 133 (335)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~v 133 (335)
.+.+|...|..++|++++. .+++++.|+.|++||+. +++.+..+.+|.+.|++++|+|+ ++.|++|+.||+|++
T Consensus 4 ~l~gH~~~V~~l~~s~dg~--~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGK--RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ----CCCCEEEECCCSSSC--CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred ecccCcceeEEEEECCCCC--eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3457888999999998765 45566679999999998 56778889999999999999988 899999999999999
Q ss_pred eecCCCCceeEE---EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc---
Q psy16316 134 WDLRSPNCQGIM---HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--- 205 (335)
Q Consensus 134 Wd~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 205 (335)
||+.+++..... .+...+..+.|+|+ +.++++|+.|++|++||++......... ...+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC-
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCccc
Confidence 999987632222 23455677899999 9999999999999999998743222222 223456788999999
Q ss_pred ----------CCCEEEEEeCCCeEEEEECCCCe----eeeeecccccCCCCceEEEEcCC---CcEEEEEeCCCcEEEEE
Q psy16316 206 ----------DGKYILISTNGSIIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPD---SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 206 ----------~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~sp~---~~~l~tgs~dg~v~iwd 268 (335)
++.++++++.|+.|++||++++. ....+. .|...+.+++|+|+ +++|++|+.||.|++||
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec---CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 58999999999999999998773 333333 45667899999999 89999999999999999
Q ss_pred CCCCee----EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 269 AEKGFK----VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 269 ~~~~~~----~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
..++.. .......|.+.|++++|+|++.++++++ +.+++|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 987531 1112245889999999999999999886 5688897653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=225.43 Aligned_cols=246 Identities=10% Similarity=0.023 Sum_probs=190.6
Q ss_pred eeccCCccEEEEEECCCCCEE-EEecCCCeEEEEEcc--CCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 16 LFRENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCE--LGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
...+|.+.|++++|+|+|++| |+|+.||+|+|||+. +++....+. .+...+..++|++++.. +++++.++.++
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~~g~v~ 174 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT--VIIADKFGDVY 174 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE--EEEEETTSEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE--EEEEeCCCcEE
Confidence 345788899999999999996 999999999999999 787777765 34567889999987654 44555699999
Q ss_pred EEEcCCCceEe----eecCCCCCeEEEEECCC---CCEEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCC
Q psy16316 91 YLSLHDNKYIR----YFPGHTKKVNSLCLSPI---DDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGL 161 (335)
Q Consensus 91 ~~~~~~~~~~~----~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~ 161 (335)
+|++.+++... .+.+|...|++++|+|+ +++|++|+.|++|++||++++.+...+. +...+..++|+ ++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence 99998876544 78899999999999999 8999999999999999999888765532 34456678899 999
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEecc----------------------CCCccceEEEEccCCCEEEEEe-CCCe
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----------------------EKECDWTGIKFSADGKYILIST-NGSI 218 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~s~~~~~l~~~~-~~~~ 218 (335)
++++++.|++|++||+++.. ....+.... .....+.+++|+|+++++++++ .++.
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp EEEEEESSSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred EEEEEeCCCeEEEEECCCCc--EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 99999999999999998643 222222110 2234567899999999999998 8999
Q ss_pred EEEEEC--CCC---eeeeeecccccCCCCceEEEEcCCCcEEEEEeC------CCcEEEEECC
Q psy16316 219 IRTFDA--YNG---QCLQTLAGFLNNKGCPLEASFTPDSKYVISGST------DGRIHIWNAE 270 (335)
Q Consensus 219 i~i~d~--~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~------dg~v~iwd~~ 270 (335)
|++|++ .++ +.+..+.. + ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~~---~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIITF---P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEEC---S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEEeccCCCCceeeccEecc---C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999 555 44555543 3 56889999996544444443 4558888754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=207.02 Aligned_cols=292 Identities=11% Similarity=0.078 Sum_probs=187.6
Q ss_pred cccceeeeccCCcc----EEEEEECCCCC---EEEEecCCCeEEEEEccCC---cceeeeecccccceEEEEecCCCeeE
Q psy16316 10 SYKVAKLFRENTDK----ITSIDYSADGL---LLISCSEDDQIVIYDCELG---TNKRTVFSKKYGVDLIRFTHAKQAAI 79 (335)
Q Consensus 10 ~~~~~~~~~~h~~~----V~~v~~s~~g~---~lasgs~Dg~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
.++++..|+...+. |.++-|-.-|. -+++++. .+|++|+...+ +...++..+..+|..+.+.|+....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 46677777765443 55666655443 4666665 59999999998 77788888888888888887644322
Q ss_pred E-eecCC-CCeEEEEEcCCC----ceEeeecCCCCCeEEEEECCCCCEEEEee--CCCcEEEeecCC-CCceeEE-EecC
Q psy16316 80 H-ASTKI-DDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSPIDDTFISGS--YDKTVRLWDLRS-PNCQGIM-HVSG 149 (335)
Q Consensus 80 ~-~~~~~-d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s--~D~~i~vWd~~~-~~~~~~~-~~~~ 149 (335)
. +.+-. .+.++..-+... +....-.+|...|.++ ++++++.+++ .|+.|++|++.. ++..... .+..
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~ 179 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP 179 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC
Confidence 2 11111 111111111111 1122223455556554 5555555533 599999999954 5544432 3445
Q ss_pred CcceEEECC---CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEE------------EEEe
Q psy16316 150 SRPIAAFDP---EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI------------LIST 214 (335)
Q Consensus 150 ~~~~~~~~~---~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l------------~~~~ 214 (335)
...+++|++ ++.++++++.|++|+|||+.+.+ ....+.........+.+++|+|+|.++ ++++
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 566778888 77999999999999999998643 233332111123345678999999887 4567
Q ss_pred CCCeEEEEECCCCeeeeeecc--cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeE-EEEe
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAG--FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQ-TIQF 291 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~-~v~~ 291 (335)
.|++|++||..+++++..+.- ..++...+. ..+.++.++|+|+.|++|+|||+.++.....+. +|...+. .++|
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vaf 334 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKW 334 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEE
Confidence 789999999999988765521 112222233 333447899999999999999999999888885 5766555 6899
Q ss_pred CCCCcEEEeee--ceeEEecc
Q psy16316 292 NPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 292 sp~~~~~~s~~--~~~~~w~~ 310 (335)
||+|++|+||+ ++|++|.+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 99999999997 57999963
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=215.63 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=198.9
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.+.+|.+.|.++.|+|+|.++++++.|++|++||+++++....+..+...+..++|.+++... ++++..|+.+++||+.
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLV-YCSNWISEDISVIDRK 242 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEE-EEEETTTTEEEEEETT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEE-EEEecCCCcEEEEECC
Confidence 456899999999999999999999999999999999998888877777889999999876644 3455568999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEee--------CCCcEEEeecCCCCceeEEEecCCcceEEECCCCC-EEEEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGS--------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL-IFGVG 166 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s--------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (335)
+++.+..+..+ ..+.+++|+|+++.|++++ .|+.|++||+++++.............++++|+++ +++++
T Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 243 TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence 99988888765 4589999999999999988 58999999999887666554444555678999996 55677
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---------------CCeEEEEECCCCeeee
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---------------GSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------~~~i~i~d~~~~~~~~ 231 (335)
+.++.+++||+++.. ....+ .....+.+++|+|+++++++++. |+.|++||+.+++...
T Consensus 322 ~~~~~v~v~d~~~~~--~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 322 MCCSKIEVYDLKEKK--VQKSI----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp TTTTEEEEEETTTTE--EEEEE----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred cCCCEEEEEECCCCc--EEEEe----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 899999999997532 12222 12345678999999999988876 4699999999998887
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeC-CCcEEEEECC
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIWNAE 270 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~~ 270 (335)
.+.. ...+..++|+|++++|++++. |+.|++|++.
T Consensus 396 ~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FWEA----GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEC----SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EecC----CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 7654 235788999999999988775 9999999975
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=214.96 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=170.3
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC---------CCCceeEEE
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR---------SPNCQGIMH 146 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~---------~~~~~~~~~ 146 (335)
+..++++++.|++|++||+.+++.+..+. ...|.++.++|+ +++++.|++|++|+.. +++......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 45677888899999999999999888776 577889999997 9999999999999765 333333332
Q ss_pred ec--CCcceEEECC--CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 147 VS--GSRPIAAFDP--EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 147 ~~--~~~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
.. ..+..+.++| ++.++++++.|++|++||++.... . .. ........+.+++|+|++.+|++++.|+.|++|
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~-~~-~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--Y-IV-HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--E-EE-ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--E-EE-EecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22 3466788999 999999999999999999986431 1 11 112334457899999999999999999999999
Q ss_pred ECCCCeee-eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CCCCCeE--EEEeCCCCcE
Q psy16316 223 DAYNGQCL-QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQ--TIQFNPKFNM 297 (335)
Q Consensus 223 d~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h~~~v~--~v~~sp~~~~ 297 (335)
|+++++.. ..+.. .|...+.+++|+|++.+|++++.+ .|++||+.++.....+.. .|..++. +++|+|++++
T Consensus 198 d~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 198 NLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp ESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred ECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 99999876 55544 245678999999999999999954 999999987754432221 1334444 6999999999
Q ss_pred EEe--e-eceeEEecc
Q psy16316 298 MAS--A-CTNLAFWIP 310 (335)
Q Consensus 298 ~~s--~-~~~~~~w~~ 310 (335)
+++ + ++.+++|..
T Consensus 275 l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEecCCCCcEEEEEE
Confidence 999 4 567999975
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=206.84 Aligned_cols=245 Identities=12% Similarity=0.036 Sum_probs=172.5
Q ss_pred EEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEe
Q psy16316 47 IYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISG 125 (335)
Q Consensus 47 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~ 125 (335)
||++.+...+.....|...|.+++|++++. .+++++ ++.+++|++.+.+....... ..+..+++.++++.+ +++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~--~la~g~-~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQS--CLILST-LKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSS--EEEEEC-SSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCC--EEEEEc-CCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEE
Confidence 566666666666677888999999999876 344444 45689999988766654432 357788888888776 678
Q ss_pred eCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc
Q psy16316 126 SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 126 s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (335)
+.|++|++||+.++++...+.....+..+.++++. ++++ .++.+++||+..... ....+.. ....+++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~-~~~~~~~------~~~~~~~s~ 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK-RITDDIR------FGGVCEFSN 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC-BSSCCEE------EEEEEEEET
T ss_pred CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce-eeEEecc------CCceEEEEc
Confidence 88999999999998887776666555666777654 4444 478999999986411 1111111 223456777
Q ss_pred CCCEEEE--EeCCCeEEEEECCCCe----------------eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-EEE
Q psy16316 206 DGKYILI--STNGSIIRTFDAYNGQ----------------CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-IHI 266 (335)
Q Consensus 206 ~~~~l~~--~~~~~~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-v~i 266 (335)
.++++ ++.++.|++||+.+++ +...+. .|...|.+++|+|++++||+|+.|++ |++
T Consensus 148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp --TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 66666 4788999999999865 134444 45677899999999999999999999 999
Q ss_pred EECCCCeeEEEeCCC-CCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 267 WNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 267 wd~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
||+.++..+..+..+ |.++|++++|+|+++++++++ +.+++|.+.
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 999999888877644 999999999999999999997 569999764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=213.21 Aligned_cols=270 Identities=13% Similarity=0.122 Sum_probs=196.2
Q ss_pred CCccEEEEEECCCCC-EEEEec----CCC----eEEEEEc--cCCcce--eeeecccccceEEEEec-------------
Q psy16316 20 NTDKITSIDYSADGL-LLISCS----EDD----QIVIYDC--ELGTNK--RTVFSKKYGVDLIRFTH------------- 73 (335)
Q Consensus 20 h~~~V~~v~~s~~g~-~lasgs----~Dg----~i~lwd~--~~~~~~--~~~~~~~~~~~~~~~~~------------- 73 (335)
+...|....|++.|. ++++|+ .|| +++|||+ .+++.+ ..+.++...+..+++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345788888988885 676887 468 9999999 888866 33555555554444432
Q ss_pred -CCCeeEEeecC-CC---CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC---cEEEeecCCCCceeEE
Q psy16316 74 -AKQAAIHASTK-ID---DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK---TVRLWDLRSPNCQGIM 145 (335)
Q Consensus 74 -~~~~~~~~~~~-~d---~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~---~i~vWd~~~~~~~~~~ 145 (335)
.....++++.. .+ +.|++||+.. ...+.+.+|...|.+++|+|+|+.|++++.|+ .|++||+.++++....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 12222232221 23 7999999975 45677788999999999999999999999886 9999999998876555
Q ss_pred EecCCcceEEECCCCCEEE-EEEcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C--eE
Q psy16316 146 HVSGSRPIAAFDPEGLIFG-VGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S--II 219 (335)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~--~i 219 (335)
...+......|+|+|+.++ +++.++ .|.+||+.+.. .. ....+...+.+++|+|+|++|+.++.+ + .|
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 4555566789999999777 555554 59999987532 11 222334456789999999999988763 4 68
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC---CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD---GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
++||+.+++.. .+.. +...+..++|+|+|++|++++.+ ..|++||..++... .+. .|. .+..++|+|+|+
T Consensus 294 ~~~d~~~~~~~-~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 294 YKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGT 366 (415)
T ss_dssp EEEETTSSCCE-ECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSS
T ss_pred EEEECCCCCEE-EEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCC
Confidence 88899887643 3322 23456789999999999988865 58999999887654 343 343 899999999999
Q ss_pred EEEeeec
Q psy16316 297 MMASACT 303 (335)
Q Consensus 297 ~~~s~~~ 303 (335)
++++++.
T Consensus 367 ~l~~~s~ 373 (415)
T 2hqs_A 367 MVIYSSS 373 (415)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9887763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-26 Score=205.23 Aligned_cols=267 Identities=12% Similarity=0.116 Sum_probs=198.1
Q ss_pred eeeccCCccEEEEEECC--------------CCCEEEEecCC------CeEEEEEccCCcceeeeecccccceEEEEecC
Q psy16316 15 KLFRENTDKITSIDYSA--------------DGLLLISCSED------DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~--------------~g~~lasgs~D------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (335)
..|.+|...+..+++++ .+..++.++.+ ++|++||++ +...+.+..+...+..++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence 45778888887777764 26667666654 799999997 4556677778888999999998
Q ss_pred CCeeEEeecC-CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCCCc--EEEeecCCCCceeEEEecCC
Q psy16316 75 KQAAIHASTK-IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKT--VRLWDLRSPNCQGIMHVSGS 150 (335)
Q Consensus 75 ~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--i~vWd~~~~~~~~~~~~~~~ 150 (335)
+...+.++.. .+..+++||+.+++.. .+.+|...+.+++|+|+|+.|+ +++.|+. |++||+.+++..........
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~ 268 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN 268 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc
Confidence 7755444321 1259999999988765 4667888999999999999777 7776665 99999988776443333444
Q ss_pred cceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEEC
Q psy16316 151 RPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDA 224 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~ 224 (335)
.....|+|+|+.++.++. ++ .|.+||+.... ...+ ......+..++|+|+|++|++++.+ ..|++||+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRI---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEEC---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEE---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 566789999998888776 44 67777876532 1111 1222345679999999999987754 57999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC---cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
.+++.. .+..+ ..+..++|+|||++|++++.++ .|++||+.. .....+ ..|.+.|.+++|+|.-+
T Consensus 343 ~~~~~~-~l~~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l-~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 343 ATGGVQ-VLSST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL-PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTCCEE-ECCCS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC-CCSSSEEEEEEECCCCC
T ss_pred CCCCEE-EecCC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe-eCCCCCCcCCccccccc
Confidence 988763 34332 2577899999999999998877 799999864 444455 45889999999999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=215.25 Aligned_cols=282 Identities=12% Similarity=0.083 Sum_probs=206.4
Q ss_pred CccEEEEEECCCCCEEEEecC-CC-----eEEEEEccCCcceeeeecccc------------------------cceEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSE-DD-----QIVIYDCELGTNKRTVFSKKY------------------------GVDLIR 70 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~-Dg-----~i~lwd~~~~~~~~~~~~~~~------------------------~~~~~~ 70 (335)
.+.|.+++|||||++|++++. |+ +|++||+++++.......+.. .+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567999999999999999998 88 999999999876655544332 377889
Q ss_pred EecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec
Q psy16316 71 FTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS 148 (335)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 148 (335)
|++++...++++. +.+.+||+.++. .++.+..|...+.+++|+|+|+.|+.++ ++.|++||+.+++...+....
T Consensus 116 ~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 9998876665553 899999999873 4555777888999999999999999987 569999999886554332211
Q ss_pred CC-----------------cceEEECCCCCEEEEEEcCC---------------------------------eEEEEEcc
Q psy16316 149 GS-----------------RPIAAFDPEGLIFGVGVNSD---------------------------------TIKLYDVR 178 (335)
Q Consensus 149 ~~-----------------~~~~~~~~~~~~~~~~~~d~---------------------------------~v~iwd~~ 178 (335)
.. ...+.|+|+|+.+++++.++ .|.+||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 11 24578999999888887655 78888886
Q ss_pred C-CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-----CCeEEEEECCCCeeeeeecccccC-CCCceEEEEcCC
Q psy16316 179 S-FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-----GSIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPD 251 (335)
Q Consensus 179 ~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~sp~ 251 (335)
+ ... ........+...+..++| |||++|+++.. +..|++||+.++++...+..+... ...+..++|+||
T Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 272 EQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp TTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 5 331 111111123445678999 99999987653 467999999999876665543221 112346899999
Q ss_pred CcEEEEEeCCCcEEEEECC-CCeeEEEeCCCCCCCeEEE-EeCCCCcEEEee-e--c--eeEEecccc
Q psy16316 252 SKYVISGSTDGRIHIWNAE-KGFKVCVLDADHPSPVQTI-QFNPKFNMMASA-C--T--NLAFWIPTY 312 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~~h~~~v~~v-~~sp~~~~~~s~-~--~--~~~~w~~~~ 312 (335)
|+++++++.||.++||... ++. ...+ ..|...|..+ +|+|+++.++.. . + .+++|..+.
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999999999988888765 333 4444 3467788887 599999866543 2 2 688997653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-24 Score=199.77 Aligned_cols=291 Identities=13% Similarity=0.075 Sum_probs=211.4
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEc--cCCcceeeeecccccceEEEEec----CCCeeEEeec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDC--ELGTNKRTVFSKKYGVDLIRFTH----AKQAAIHAST 83 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 83 (335)
..++.+++..+.. +.++.|+|||++|++++.|++|++||+ .+++....+.. ...+..++|++ ++...+. +.
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v-~~ 244 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIA-GA 244 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEE-EE
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEE-EE
Confidence 3556677773333 899999999999999999999999999 78877776653 44568889988 7665433 33
Q ss_pred CCCCeEEEEEcCCCceEeeecC----------CCC-CeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCcee--EEEecC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPG----------HTK-KVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQG--IMHVSG 149 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~----------H~~-~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~--~~~~~~ 149 (335)
..+++|.+||..++++++.+.. |.. .+.++.++|++. ++++...+++|.+||..+.+... .+....
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~ 324 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 324 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc
Confidence 3589999999999999888765 333 789999999765 67788889999999998766544 222223
Q ss_pred CcceEEECCCCCEEEEE-EcCCeEEEEEccCCCCCceeeEEec-cCCCccceEEE-EccC-CCEEEEEe-CCCeEEEEEC
Q psy16316 150 SRPIAAFDPEGLIFGVG-VNSDTIKLYDVRSFDKGPFSNFKFA-AEKECDWTGIK-FSAD-GKYILIST-NGSIIRTFDA 224 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-~s~~-~~~l~~~~-~~~~i~i~d~ 224 (335)
....+.|+|+++++.++ ..+++|.+||..+.+ ....+... ..+.. .... ++|+ +..++++. .+++|.+||+
T Consensus 325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~--l~~~i~~g~~ph~g--~g~~~~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR--LSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CccCceECCCCCEEEEEecCCCeEEEEECCCCe--EEEeeccCCCCCCC--CCcccCCCCCccEEEeccCCCceEEEEEe
Confidence 33457899999976655 468899999998632 12222211 01111 1222 4777 55555554 5789999999
Q ss_pred CC-------CeeeeeecccccCCCCceEEEEcCCCcEEEEEe-------CCCcEEEEECCCCeeE-EEeC-------CCC
Q psy16316 225 YN-------GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS-------TDGRIHIWNAEKGFKV-CVLD-------ADH 282 (335)
Q Consensus 225 ~~-------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs-------~dg~v~iwd~~~~~~~-~~~~-------~~h 282 (335)
.+ +++++++.++. ..+..++|||++++|++++ .+++|.+||..++... ..++ ..+
T Consensus 401 ~~~~~~~~~~~~v~~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp CTTTCTTTBTSEEEEEECSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred CCCCCchhcCeEEEEEEcCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 88 88888887643 3356699999999999987 3779999999987655 3331 245
Q ss_pred CCCeEEEEeCCCCcEEEee-------eceeEEecc
Q psy16316 283 PSPVQTIQFNPKFNMMASA-------CTNLAFWIP 310 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~~~s~-------~~~~~~w~~ 310 (335)
...+..++|+|+|..+..+ ++.|.+|..
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 7789999999999887744 256888865
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-24 Score=188.64 Aligned_cols=276 Identities=10% Similarity=0.093 Sum_probs=196.4
Q ss_pred EECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce-EeeecC
Q psy16316 28 DYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-IRYFPG 105 (335)
Q Consensus 28 ~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~ 105 (335)
.|.+++. .+++++.+++|++||.++++....+..+.... .++|++++...+ +++..++.+.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~-~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVV-VTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEE-EEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEE-EEeCCCCeEEEEECCCCceeEEeccc
Confidence 4566655 58889999999999999998877766554455 888988876444 4444578999999999887 777777
Q ss_pred CCCCeEEEEECCCCCEEEEeeCCC---cEEEeecCCCCceeEEEecCCcceEEECCCCC-EEEEEEcCCe-EEEEEccCC
Q psy16316 106 HTKKVNSLCLSPIDDTFISGSYDK---TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL-IFGVGVNSDT-IKLYDVRSF 180 (335)
Q Consensus 106 H~~~V~~~~~~~~~~~l~s~s~D~---~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~-v~iwd~~~~ 180 (335)
+..+..+++|+|++++|+++..++ .|++||+.+++....+........++++|+|+ +++++..++. +.+|++...
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 777776699999999998655553 89999999887766665555556789999997 5555566678 999998742
Q ss_pred CCCceeeE-EeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCee---eeeecccccCCCCceEEEEcCCCcEE
Q psy16316 181 DKGPFSNF-KFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQC---LQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 181 ~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
. ..... ............++|+|+|++++++. .++.|++||+.+++. +..+.. ...+..++|+|||++|
T Consensus 162 g--~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l 235 (331)
T 3u4y_A 162 G--VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTV 235 (331)
T ss_dssp C--CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEE
T ss_pred C--cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEE
Confidence 2 11111 11112223457899999999776655 578999999998887 555542 2446679999999976
Q ss_pred EEEe-CCCcEEEEECCCCee--EEEeCCC---CCC---CeEEEEeCCCCcEEEeee---ceeEEeccc
Q psy16316 256 ISGS-TDGRIHIWNAEKGFK--VCVLDAD---HPS---PVQTIQFNPKFNMMASAC---TNLAFWIPT 311 (335)
Q Consensus 256 ~tgs-~dg~v~iwd~~~~~~--~~~~~~~---h~~---~v~~v~~sp~~~~~~s~~---~~~~~w~~~ 311 (335)
+.++ .++.|.+||..++.. ...+... ++. ....++|+|++++++.++ +.+.+|...
T Consensus 236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 5554 578899999988765 2222211 122 235589999999776543 468999763
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-24 Score=200.95 Aligned_cols=274 Identities=13% Similarity=0.121 Sum_probs=206.9
Q ss_pred EECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc--CCCceEeeecC
Q psy16316 28 DYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL--HDNKYIRYFPG 105 (335)
Q Consensus 28 ~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~ 105 (335)
.|+|++.++++++.|++|.+||..+++....+..... +..++|++++...+.++ .|++|++||+ .+++.+..++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~--~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIG--RDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEEC--CCCeEEEEECcCCCCcEEEEEec
Confidence 3899999999999999999999999998887764333 77888998877655444 5699999999 88888888874
Q ss_pred CCCCeEEEEECC----CCCEEEEeeC-CCcEEEeecCCCCceeEEEecC------------CcceEEECCCCC-EEEEEE
Q psy16316 106 HTKKVNSLCLSP----IDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSG------------SRPIAAFDPEGL-IFGVGV 167 (335)
Q Consensus 106 H~~~V~~~~~~~----~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 167 (335)
...+..++|+| +|++|++++. |++|.+||..+.++...+...+ ....+.++|++. ++++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 45679999999 9999998884 8999999999988776654311 233567888665 455666
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeeccc-ccCCCCceE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGF-LNNKGCPLE 245 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~ 245 (335)
.+++|.+||+..........+. .......++|+|++++++++. .++.|.+||+.++++...+... ..|......
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~----~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIG----AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEE----CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred CCCeEEEEEecCCCcceeEEec----cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 7899999999764321111111 122345689999999887665 5789999999999988877632 112222222
Q ss_pred EEEcCC-CcEEEEEe-CCCcEEEEECCC-------CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---------ceeEE
Q psy16316 246 ASFTPD-SKYVISGS-TDGRIHIWNAEK-------GFKVCVLDADHPSPVQTIQFNPKFNMMASAC---------TNLAF 307 (335)
Q Consensus 246 ~~~sp~-~~~l~tgs-~dg~v~iwd~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---------~~~~~ 307 (335)
+ ++|+ +..+++++ .|++|.+||..+ +..+..+. .|.+.+..++|||+++.|.++. .+|.+
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 2 5787 67788886 689999999987 66777775 4778888999999999999874 47899
Q ss_pred eccc
Q psy16316 308 WIPT 311 (335)
Q Consensus 308 w~~~ 311 (335)
|...
T Consensus 454 ~d~~ 457 (543)
T 1nir_A 454 FDLK 457 (543)
T ss_dssp EETT
T ss_pred EECC
Confidence 9764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-23 Score=182.76 Aligned_cols=272 Identities=13% Similarity=0.107 Sum_probs=204.0
Q ss_pred CCccEEEEEECCCCCEEEEecC-------CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 20 NTDKITSIDYSADGLLLISCSE-------DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~-------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
....+..+.|+|+|+++++++. +++|.+||.++++....+.. ...+..+++++++...+ ++...++.+.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~-v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLW-FGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEE-EEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEE-EEecCCCEEEEE
Confidence 3456889999999998887774 67899999999987776644 33467788888776544 444567899999
Q ss_pred EcCCCceEeeecCCCCC---------eEEEEECCCCCEEEEee--CCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC
Q psy16316 93 SLHDNKYIRYFPGHTKK---------VNSLCLSPIDDTFISGS--YDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG 160 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~---------V~~~~~~~~~~~l~s~s--~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (335)
|+.+++.+..+..+... +.+++|+|+++.++.++ .++.|.+||+.+++....+. .......+.++|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999988887765432 78999999998777665 48899999999887766554 33334567899999
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEecc-CCCccceEEEEccCCCEEEEEeCC-CeEEEEECCCCeeeeeeccccc
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA-EKECDWTGIKFSADGKYILISTNG-SIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
+.++++..++.+.+||+.+.. ......... .....+.+++|+|++++++++..+ +.|.+||+.+++....+...
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-- 272 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-- 272 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--
T ss_pred CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--
Confidence 999999899999999987532 122222211 123345679999999988777654 89999999999887766532
Q ss_pred CCCCceEEEEcCCCcEE-EEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 239 NKGCPLEASFTPDSKYV-ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l-~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
....++|+|+++++ ++...++.|.+||..++.....+.. ......++|+|+++++..+.
T Consensus 273 ---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 273 ---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp ---SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEE
T ss_pred ---CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEE
Confidence 13468999999955 4555789999999998887776653 34678999999998655553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-23 Score=184.16 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=183.0
Q ss_pred CCEEEEecCCCeEEEEEccC-Ccc-eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCc--eEeeecCC
Q psy16316 33 GLLLISCSEDDQIVIYDCEL-GTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNK--YIRYFPGH 106 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~--~~~~~~~H 106 (335)
..++++++.|+.|++||++. +.. ......+...+..++|++++...+.+. ..++.+.+|++. +++ .+..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGV-RPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEee-cCCCeEEEEEecCCCCceeeccccccC
Confidence 34566668899999999963 321 122234556788899998876544433 335899999997 444 33455544
Q ss_pred CCCeEEEEECCCCCEEEEee-CCCcEEEeecCCC---CceeEEEecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCC
Q psy16316 107 TKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSP---NCQGIMHVSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFD 181 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~ 181 (335)
. .+.+++|+|+++.|+.++ .++.|++||+..+ ..............+.++|+++.++++. .++.|.+||+....
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 4 788999999999776665 4899999999522 2222222233345678999998777776 88999999997521
Q ss_pred CCceeeE---EeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCC--Cee--eeeecccc---cCCCCceEEEEcC
Q psy16316 182 KGPFSNF---KFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYN--GQC--LQTLAGFL---NNKGCPLEASFTP 250 (335)
Q Consensus 182 ~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~--~~~--~~~~~~~~---~~~~~v~~~~~sp 250 (335)
..... ............++|+|+++++++++ .++.|++|++.. ++. ...+.... .....+..++|+|
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 163 --HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp --CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred --ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 12111 11122223457799999999877665 788999999953 332 22222111 1123456799999
Q ss_pred CCcEEE-EEeCCCcEEEEECC--CC--eeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccccc
Q psy16316 251 DSKYVI-SGSTDGRIHIWNAE--KG--FKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 251 ~~~~l~-tgs~dg~v~iwd~~--~~--~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~ 315 (335)
++++|+ ++..++.|++|++. .+ .....+.. +. .+..++|+|++++++.++ +.+.+|..+...+
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence 998776 55579999999997 22 33333432 33 378999999999777665 5699997665443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-24 Score=181.88 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=184.8
Q ss_pred EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecCCC-CCeEEEEE
Q psy16316 38 SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPGHT-KKVNSLCL 115 (335)
Q Consensus 38 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~H~-~~V~~~~~ 115 (335)
+++.|++|++||+.+++.. .+..+...+..++|++++...+.. .++.+.+||+.+ ++....+.+|. ..|.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLN---SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEE---ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEE---cCCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 5678999999999888755 455577789999999987754443 278999999999 88877777764 78899999
Q ss_pred CCCCCEEEEee--CCCcEEEeec--CCCCceeEEEecCCcceEEECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEEe
Q psy16316 116 SPIDDTFISGS--YDKTVRLWDL--RSPNCQGIMHVSGSRPIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKF 190 (335)
Q Consensus 116 ~~~~~~l~s~s--~D~~i~vWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~ 190 (335)
+|+++.|++++ .|+..++|.+ .++... .+........+.|+|+++.++ ++..++.+++|+++.... .. ..
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~---~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VE---TR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CE---EE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cc---eE
Confidence 99999999998 4456666655 444322 222222345568999999776 777889999999754221 11 12
Q ss_pred ccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECC-CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-------
Q psy16316 191 AAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD------- 261 (335)
Q Consensus 191 ~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d------- 261 (335)
.......+..++|+|++++++.++ .++.+++|++. .+.....+.. +...+..++|+|++++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 223344568899999999888766 47888888875 4444555543 23346678999999999988876
Q ss_pred ----CcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 262 ----GRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 262 ----g~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+.|++||+.++....... .+|...+..++|+|+++.+++++.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 569999998775433221 247788999999999999888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=208.30 Aligned_cols=286 Identities=11% Similarity=0.080 Sum_probs=196.4
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccc---cceEEEEecCCCeeEEeecC-------CCCeEEEE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY---GVDLIRFTHAKQAAIHASTK-------IDDTVRYL 92 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~d~~i~~~ 92 (335)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. .+..++|+|++...+.++.. .++.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998877 7899999999999987766655543 48899999998766555431 24789999
Q ss_pred EcCCCceE--eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCc------------------
Q psy16316 93 SLHDNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSR------------------ 151 (335)
Q Consensus 93 ~~~~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~------------------ 151 (335)
|+.+++.. ....+|...+.+++|+|+|+.|+.++. +.|++||+.++....+... ....
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 99988762 223456666899999999999999886 7999999988776554422 1111
Q ss_pred ceEEECCCCCEEEEEEcCC----------------------------------eEEEEEccCCCCCceeeEEec---cCC
Q psy16316 152 PIAAFDPEGLIFGVGVNSD----------------------------------TIKLYDVRSFDKGPFSNFKFA---AEK 194 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~----------------------------------~v~iwd~~~~~~~~~~~~~~~---~~~ 194 (335)
..+.|+|+|+.++.++.++ .+.+||+.+... ...+... ...
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMR 253 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGS
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCc
Confidence 4578999999998887543 788999875331 1111110 011
Q ss_pred CccceEEEEccCCCEEEEEeC----CCeEEEEECCCCeeeeeecccccC-CCC-ceEEEEcCCCcEEEE--EeCCC----
Q psy16316 195 ECDWTGIKFSADGKYILISTN----GSIIRTFDAYNGQCLQTLAGFLNN-KGC-PLEASFTPDSKYVIS--GSTDG---- 262 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~-~~~-v~~~~~sp~~~~l~t--gs~dg---- 262 (335)
...+..++|+|||+++++... +..|++||+.++++...+...... ... ...++|+|||+.|+. +..++
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 334577999999998876643 257999999999876655432111 110 136899999997765 45667
Q ss_pred --cEEEEE-CCCCee--EEEeCCCCCCCeEE-EEeCCCCcEEEeee-----ceeEEeccccc
Q psy16316 263 --RIHIWN-AEKGFK--VCVLDADHPSPVQT-IQFNPKFNMMASAC-----TNLAFWIPTYL 313 (335)
Q Consensus 263 --~v~iwd-~~~~~~--~~~~~~~h~~~v~~-v~~sp~~~~~~s~~-----~~~~~w~~~~~ 313 (335)
.|++|| ...+.. ...+.. +...+.. ++|+|+++.++..+ +.+++|..+..
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITS-GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCC-SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eeEEEEEeccCCCCccceeEeec-CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 577777 333330 333332 2334554 69999999886543 45889987544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-22 Score=176.92 Aligned_cols=268 Identities=12% Similarity=0.115 Sum_probs=180.1
Q ss_pred cCCccEEEEEECCCCCEEEEecCC-CeEEEEEcc--CCcce--eeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSED-DQIVIYDCE--LGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~D-g~i~lwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.|...+.+++|+|+|++|++++.+ +.|++|+++ +++.. ..+.. ...+..++|++++...+ +++..++.+.+|+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~-~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVF-VGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEE-EEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEE-EEecCCCeEEEEE
Confidence 577889999999999988888876 999999997 44432 23322 23678889998876543 3444588999999
Q ss_pred c---CCCceEeeecCCCCCeEEEEECCCCCEEEEee-CCCcEEEeecCC-CCceeEE----Ee--cCCcceEEECCCCCE
Q psy16316 94 L---HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRS-PNCQGIM----HV--SGSRPIAAFDPEGLI 162 (335)
Q Consensus 94 ~---~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~-~~~~~~~----~~--~~~~~~~~~~~~~~~ 162 (335)
+ ...+.+..+.++ ..+.+++|+|+++.+++++ .|+.|++||+.+ ++..... .. ......+.++|++.+
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp EETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred CCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 9 444555666544 4588999999999887777 899999999987 5443221 11 122345789999986
Q ss_pred EEEE-EcCCeEEEEEccCCCCCc--eeeEEeccC---CCccceEEEEccCCCEEEEEe-CCCeEEEEECC--CC--eeee
Q psy16316 163 FGVG-VNSDTIKLYDVRSFDKGP--FSNFKFAAE---KECDWTGIKFSADGKYILIST-NGSIIRTFDAY--NG--QCLQ 231 (335)
Q Consensus 163 ~~~~-~~d~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~--~~--~~~~ 231 (335)
++++ ..++.+.+||+....... ......... .......++|+|++++|+++. .++.|++||+. ++ +.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 6544 478999999996422111 111111111 112345799999999888655 68899999998 32 2333
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEEC--CCCee--EEEeCCCCCCCeEEEEeCCCC
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNA--EKGFK--VCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~--~~~~~--~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.+.. . ..+..++|+|++++|++++ .++.|.+|++ .++.. +..++.+ ..-..++|.|+.
T Consensus 272 ~~~~---~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~ 334 (343)
T 1ri6_A 272 FQPT---E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHE 334 (343)
T ss_dssp EEEC---S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC
T ss_pred eecC---C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEccc
Confidence 3322 2 2267899999999888887 6899999954 45532 3333331 233577787753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-21 Score=169.96 Aligned_cols=256 Identities=11% Similarity=0.131 Sum_probs=175.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEec-CCCeEEEEEccCCcc-eeeeecccccceEEEEecCCCeeEEeecCCCC-
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCS-EDDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD- 87 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~- 87 (335)
.++...+..+...+ ++.|+|+|+++++++ .++.|.+||.++++. ...+..+......++|++++...+ ++...++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~ 107 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHP 107 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSS
T ss_pred cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecCCCCc
Confidence 44555666667777 999999999665555 489999999999887 555554444444488998877655 3333234
Q ss_pred -eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCc-EEEeecCCCCcee-----EEEecCCcceEEECCC
Q psy16316 88 -TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKT-VRLWDLRSPNCQG-----IMHVSGSRPIAAFDPE 159 (335)
Q Consensus 88 -~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~-i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~ 159 (335)
.+.+||+.+++.+..+..+ ....+++|+|+++.| ++...++. |.+||+....... ..........+.++|+
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPD 186 (331)
T ss_dssp CEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred ccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCC
Confidence 9999999999988887754 456899999999755 45566688 9999998644321 1111223345789999
Q ss_pred CCEE-EEEEcCCeEEEEEccCCCCCc-eeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCee--eeeec
Q psy16316 160 GLIF-GVGVNSDTIKLYDVRSFDKGP-FSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQC--LQTLA 234 (335)
Q Consensus 160 ~~~~-~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~ 234 (335)
|+++ +++..++.|.+||+.+..... ...+. .......++|+|+|++++++.. ++.|.+||+.+++. +..+.
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 9854 555568999999997643200 22222 1234467999999998877654 67799999999876 33322
Q ss_pred cc----ccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEECCCCe
Q psy16316 235 GF----LNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAEKGF 273 (335)
Q Consensus 235 ~~----~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~~~~~ 273 (335)
.. .........++|+||+++|++++ .++.|.+||+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 21 11111123579999999876554 56799999997654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=194.20 Aligned_cols=275 Identities=11% Similarity=0.051 Sum_probs=192.7
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-----
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----- 96 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----- 96 (335)
..|.+++|||| +.++.+ .|+++++||+.+++... +..+...+..++|+|++...+.. .|+.|.+|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~---~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV---RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE---ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE---ECCeEEEEecCcccccC
Confidence 56999999999 554444 35999999998876543 34445667888999988765443 479999999998
Q ss_pred CceEeeecCCCCC--------------eEEEEECCCCCEEEEee---------------------------------CCC
Q psy16316 97 NKYIRYFPGHTKK--------------VNSLCLSPIDDTFISGS---------------------------------YDK 129 (335)
Q Consensus 97 ~~~~~~~~~H~~~--------------V~~~~~~~~~~~l~s~s---------------------------------~D~ 129 (335)
++..+....+... +.++.|+|+|+.|++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 8777655555443 48999999999999998 457
Q ss_pred cEEEeecCCCCceeEEEe---cCCcceEEECCCCCEEEEEEcCC-----eEEEEEccCCCCCceeeEEe-ccC-CCccce
Q psy16316 130 TVRLWDLRSPNCQGIMHV---SGSRPIAAFDPEGLIFGVGVNSD-----TIKLYDVRSFDKGPFSNFKF-AAE-KECDWT 199 (335)
Q Consensus 130 ~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~-~~~-~~~~~~ 199 (335)
.|++||+.+++....... ......+.|+|+|+.+++++.++ .|.+||+.+.. ....... ... ....+.
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccC
Confidence 899999988765433211 12234578999999988887765 89999987631 1111111 111 111235
Q ss_pred EEEEcc--CCCEEEEEeCCCeEEEEECC-CCeeeeeecccccCCCCceE-EEEcCCCcEEEEEeC-CC----cEEEEECC
Q psy16316 200 GIKFSA--DGKYILISTNGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLE-ASFTPDSKYVISGST-DG----RIHIWNAE 270 (335)
Q Consensus 200 ~~~~s~--~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~tgs~-dg----~v~iwd~~ 270 (335)
.++|+| +|++++++..++.+++|+.. +++..+.+.. +...+.. ++|+|+++.|+.++. ++ .|+.||..
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 689999 99999988888888888775 5555666643 2333444 799999987765554 44 67777877
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec------eeEEecc
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPKFNMMASACT------NLAFWIP 310 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~------~~~~w~~ 310 (335)
++.. ..+ .|...+..++|+|+|++++.+.. .+.+|.+
T Consensus 391 ~~~~-~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 391 GGKT-KDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp CCCC-EES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred CCCc-eec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 6653 233 26678999999999998876632 3777764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-22 Score=176.15 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=190.2
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccc--cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC-C----
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKY--GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG-H---- 106 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-H---- 106 (335)
.+|++++.|++|++||+.+++....+..... .+..++|++++...+ +++..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY-ATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE-EEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEE-EEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 4789999999999999999887776653322 477889998866544 4445688999999999988776652 2
Q ss_pred CCCeEEEEECCCCCEEEEee------------CCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 107 TKKVNSLCLSPIDDTFISGS------------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s------------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
...+.+++|+|+++.|+.++ .|+.|.+||+.+++....+........+.++|++++++++ ++.+.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 23677999999999888886 5799999999887766555544445567899999977777 688999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C-----------------------eEEEEECCCCeee
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S-----------------------IIRTFDAYNGQCL 230 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~-----------------------~i~i~d~~~~~~~ 230 (335)
||+.+.. ....+. ... ....+.|+|++..++.+..+ + .|.+||+.+++..
T Consensus 159 ~d~~~~~--~~~~~~--~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 159 MDPEAGT--LVEDKP--IQS--WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EETTTTE--EEEEEC--STT--TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EECCCCc--Eeeeee--ccc--cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 9997532 111111 111 00124789999877654432 2 4689999988764
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
.+. ...+...+..++|+|++++++++ ++.|++||..++.....+.. ...+.+++|+|+++++++++ +.+.+|
T Consensus 233 -~~~-~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 233 -MRE-VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp -EEE-EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred -Eee-cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 222 12233456789999999999988 68999999998877766643 34678999999999777664 468888
Q ss_pred cc
Q psy16316 309 IP 310 (335)
Q Consensus 309 ~~ 310 (335)
.+
T Consensus 307 d~ 308 (337)
T 1pby_B 307 DA 308 (337)
T ss_dssp ET
T ss_pred EC
Confidence 65
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=194.72 Aligned_cols=277 Identities=14% Similarity=0.157 Sum_probs=190.4
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcce-eeeeccc-----------------ccceEEEEecCCCeeEEeecCC
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-RTVFSKK-----------------YGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
+..+.|. |..+++++.|+ | +||+.+++.. ..+..+. ..+..++|+++ ...++. .
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~---~ 99 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF---T 99 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE---E
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE---E
Confidence 4456777 66777788888 8 9999999873 4444432 45889999998 443333 2
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-----CCceeEEEecCC----------
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-----PNCQGIMHVSGS---------- 150 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-----~~~~~~~~~~~~---------- 150 (335)
++.+++||+.+++.... ..|...+.+++|+|+|+.|+++ .|+.|++||+.+ ++..........
T Consensus 100 ~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 59999999998876554 4467789999999999999985 789999999988 665433221111
Q ss_pred -----cceEEECCCCCEEEEEE---------------------------------cCCeEEEEEccCCCCCceeeEEecc
Q psy16316 151 -----RPIAAFDPEGLIFGVGV---------------------------------NSDTIKLYDVRSFDKGPFSNFKFAA 192 (335)
Q Consensus 151 -----~~~~~~~~~~~~~~~~~---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~~ 192 (335)
...+.|+|+|+.+++++ .+..|.+||+.+.. ........
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~ 254 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK---TVYLQTGE 254 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE---EEECCCCS
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc---eEeeccCC
Confidence 25678999999999887 34679999987532 11111111
Q ss_pred CCCccceEEEEccCCCEEEEEeCCC-----eEEEEECCCCeeeeeeccccc--CCCCceEEEEcC--CCcEEEEEeCCCc
Q psy16316 193 EKECDWTGIKFSADGKYILISTNGS-----IIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTP--DSKYVISGSTDGR 263 (335)
Q Consensus 193 ~~~~~~~~~~~s~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp--~~~~l~tgs~dg~ 263 (335)
.+...+..++|+|||+.|++++.++ .|++||+.+++..+.+..... ....+..++|+| ||++|++++.|+.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 2334567899999999999877665 899999999844444332111 111235689999 9999999999999
Q ss_pred EEEEECC-CCeeEEEeCCCCCCCeEE-EEeCCCCcEEEeee-c----eeEEecccccc
Q psy16316 264 IHIWNAE-KGFKVCVLDADHPSPVQT-IQFNPKFNMMASAC-T----NLAFWIPTYLS 314 (335)
Q Consensus 264 v~iwd~~-~~~~~~~~~~~h~~~v~~-v~~sp~~~~~~s~~-~----~~~~w~~~~~~ 314 (335)
++||.+. ++.....+. .|...+.. ++|+|+++.++.++ . ...+|..+...
T Consensus 335 ~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred cEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 9999876 555555553 46677877 89999998766543 2 25777665543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=192.27 Aligned_cols=267 Identities=13% Similarity=0.071 Sum_probs=184.5
Q ss_pred CccEEEEEECCCCCEEEEecC-CCeEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeec-CCCCeEEEEEcCC-
Q psy16316 21 TDKITSIDYSADGLLLISCSE-DDQIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHD- 96 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~- 96 (335)
..+|.++.|+|||++||+++. ||+++||+++.++.. .+..+. ..+..++|+++ ...+.... +.+...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 557999999999999999987 999999999766543 344444 56788889877 32222221 2355566665533
Q ss_pred --CceEeeecCCCCCeEEEEECCCCC--EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC---
Q psy16316 97 --NKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS--- 169 (335)
Q Consensus 97 --~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 169 (335)
+... .+..+ ..+...+|+|+++ .+++++.|+ +.+||+.+++...+..... ....++|+|+.++.++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence 2222 33222 2234557777764 455555555 5599998887655544333 567899999999988776
Q ss_pred -CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC--eEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 170 -DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 170 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
..|.+||+.+.. ...+ ..+...+..++|||||+.|+++..++ .|++||+.+++.. .+..+ ...+..+
T Consensus 174 ~~~i~~~d~~~g~---~~~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~---~~~~~~~ 243 (582)
T 3o4h_A 174 RVSLFTSNLSSGG---LRVF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP---SKDFSSY 243 (582)
T ss_dssp EEEEEEEETTTCC---CEEE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS---CSHHHHH
T ss_pred CeEEEEEcCCCCC---ceEe---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC---CcChhhh
Confidence 789999987533 2222 23344567899999999999888888 8999999988765 44332 2233445
Q ss_pred E--------EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece---eEEeccc
Q psy16316 247 S--------FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN---LAFWIPT 311 (335)
Q Consensus 247 ~--------~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~---~~~w~~~ 311 (335)
+ |+|||.++++++.|+++++|++ +.... .+.+.|.+++|+ ++.++++++.. -.+|..+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 5 9999999999999999999999 54332 245688999999 99888877532 4455443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-21 Score=168.22 Aligned_cols=272 Identities=11% Similarity=0.146 Sum_probs=179.1
Q ss_pred cCCCeEEEEEccC--Cccee-eeecccccceEEEEecCCCeeEEeec-CCCCeEEEEEcCCCc--eEeeecCCCCCeEEE
Q psy16316 40 SEDDQIVIYDCEL--GTNKR-TVFSKKYGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHDNK--YIRYFPGHTKKVNSL 113 (335)
Q Consensus 40 s~Dg~i~lwd~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~ 113 (335)
+.++.|.+|+++. ++... ....+...+..++|++++. .+.++. ..++.|.+|++.+++ .+..+..|...+..+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 3467788887654 44322 2233445677899999776 333332 347899999997765 344555677888999
Q ss_pred EECCCCCEEEEee-CCCcEEEeecCC-CCceeEEE--ecC----------CcceEEECCCCCEEEEEEcCCeEEEEEccC
Q psy16316 114 CLSPIDDTFISGS-YDKTVRLWDLRS-PNCQGIMH--VSG----------SRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 114 ~~~~~~~~l~s~s-~D~~i~vWd~~~-~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 179 (335)
+|+|++++|++++ .+++|++||+.. +....... ..+ ....++++|+|+++++...++.|.+||+..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 9999999888887 789999999963 33222221 111 123478999999777777789999999973
Q ss_pred CCCCceeeEE-eccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCC--Cee--eeeeccccc---CCCCceEEEEcC
Q psy16316 180 FDKGPFSNFK-FAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYN--GQC--LQTLAGFLN---NKGCPLEASFTP 250 (335)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~sp 250 (335)
. +...... ...........++|+|+|++++++ ..++.|++|++.. ++. ...+..... ....+..++|+|
T Consensus 172 ~--g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 A--GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp T--SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred C--CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 1 2122111 111122244679999999977765 5678899999774 442 122211111 113467799999
Q ss_pred CCcEE-EEEeCCCcEEEEECCC-C--eeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccccc
Q psy16316 251 DSKYV-ISGSTDGRIHIWNAEK-G--FKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 251 ~~~~l-~tgs~dg~v~iwd~~~-~--~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~ 315 (335)
||++| ++...++.|.+|++.. + .....+. .+...+..++|+|+++++++++ +.+.+|..+...+
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 99977 5666789999999862 2 3333343 3455678999999999877764 5688896655443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-21 Score=171.36 Aligned_cols=268 Identities=13% Similarity=0.131 Sum_probs=171.1
Q ss_pred CCccEEEEEECCCCCEEEEecCC----CeEEEEEccCC--ccee--eeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 20 NTDKITSIDYSADGLLLISCSED----DQIVIYDCELG--TNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~D----g~i~lwd~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
|...+..++|+|||++|++++.+ +.|.+|+++.. +... ....+......+++ ++. .++++...++.+.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEE
Confidence 67778889999999999999886 89999998763 3211 22222233444555 433 34455556899999
Q ss_pred EEcCCCceEeee------cC--------CCCCeEEEEECCCCCEEEEe-eCCCcEEEeecCCCCc------e------eE
Q psy16316 92 LSLHDNKYIRYF------PG--------HTKKVNSLCLSPIDDTFISG-SYDKTVRLWDLRSPNC------Q------GI 144 (335)
Q Consensus 92 ~~~~~~~~~~~~------~~--------H~~~V~~~~~~~~~~~l~s~-s~D~~i~vWd~~~~~~------~------~~ 144 (335)
|++.....+..+ .+ +...+.+++|+|++++|+.+ ..++.|++|++..... . ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754332211 11 22346889999999866554 4589999999875442 1 11
Q ss_pred EEe--cCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC--CeE
Q psy16316 145 MHV--SGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG--SII 219 (335)
Q Consensus 145 ~~~--~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--~~i 219 (335)
... ......++|+|+|++++++. .++.|.+||+.......................++|+|||++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 111 22234578999999776666 6899999998742111111111112222234689999999999777665 789
Q ss_pred EEEECC--CCeeeeeecccccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEEC--CCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 220 RTFDAY--NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNA--EKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 220 ~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~--~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
.+|++. +++. +.+..... ...+..++|+|||++|++++ .++.|.+|++ .++.........+...+.+++|.
T Consensus 285 ~v~~~~~~~g~~-~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 285 AIFKVDETNGTL-TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCE-EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEcCCCCcE-EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999985 4442 12211111 34567899999999888887 5788999654 45655443322344567888885
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=193.81 Aligned_cols=267 Identities=9% Similarity=0.044 Sum_probs=189.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
.|.+++|||||++|++++. ++|++||+.++. ....+..+...+..++|+|++...++.+ ++.|.+||+.+++..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTTTEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe---CCcEEEEecCCCCEE
Confidence 4889999999999999987 999999999873 3445555667788999999987655543 568999999998877
Q ss_pred eeecCCCCC----------------eEEEEECCCCCEEEEeeCCC---------------------------------cE
Q psy16316 101 RYFPGHTKK----------------VNSLCLSPIDDTFISGSYDK---------------------------------TV 131 (335)
Q Consensus 101 ~~~~~H~~~----------------V~~~~~~~~~~~l~s~s~D~---------------------------------~i 131 (335)
+....+... +.+++|+|+|+.|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 766555443 47899999999999998876 88
Q ss_pred EEeecCC-CCceeEEEe---cCCcceEEECCCCCEEEEEEc-----CCeEEEEEccCCCCCceeeEEeccCC-CccceEE
Q psy16316 132 RLWDLRS-PNCQGIMHV---SGSRPIAAFDPEGLIFGVGVN-----SDTIKLYDVRSFDKGPFSNFKFAAEK-ECDWTGI 201 (335)
Q Consensus 132 ~vWd~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~ 201 (335)
.+||+.+ ++....... ......+.| |+|+.++++.. +..|.+||+.+... .......... ...+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCce
Confidence 9999988 765433211 122345689 99998887654 46899999876431 1111111110 0023468
Q ss_pred EEccCCCEEEEEeCCCeEEEEECC-CCeeeeeecccccCCCCceEE-EEcCCCcEEE-EEeCCC--cEEEEECCC-CeeE
Q psy16316 202 KFSADGKYILISTNGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVI-SGSTDG--RIHIWNAEK-GFKV 275 (335)
Q Consensus 202 ~~s~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~-tgs~dg--~v~iwd~~~-~~~~ 275 (335)
+|+|||++++++..++.+++|... +++ .+.+..+ ...+..+ .|+|+++.|+ +++.++ .++||++.. +...
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~ 418 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQP 418 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCC
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCe
Confidence 999999988888888877777654 344 5555432 3345566 5999998765 555555 899998763 4434
Q ss_pred EEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 276 CVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 276 ~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
..+.. ...+..++|+|++++++...
T Consensus 419 ~~l~~--~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 419 QRLSK--APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp EECCC--SCSEEEEEECTTSSEEEEEE
T ss_pred eeccc--CCCceEEEECCCCCEEEEEe
Confidence 44432 56788999999999887654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-22 Score=194.08 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=189.4
Q ss_pred cceeeeccCCc---cEEEEEECCCCCEEEEecCC---------CeEEEEEccCCcceeeeec---ccccceEEEEecCCC
Q psy16316 12 KVAKLFRENTD---KITSIDYSADGLLLISCSED---------DQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQ 76 (335)
Q Consensus 12 ~~~~~~~~h~~---~V~~v~~s~~g~~lasgs~D---------g~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 76 (335)
+..+.+.+|.. .|.+++|||||++||+++.| +.+++||+++++. ..+.. +...+..++|+|++.
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ 126 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence 44566777765 49999999999999999875 7888999998875 22322 233477889999987
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCe------------------EEEEECCCCCEEEEeeCCC---------
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKV------------------NSLCLSPIDDTFISGSYDK--------- 129 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V------------------~~~~~~~~~~~l~s~s~D~--------- 129 (335)
...+.+ ++.+.+||+.+++..+....+...+ .+++|+|+|+.|++++.|+
T Consensus 127 ~la~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 127 QLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp CEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred EEEEEE---CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 665554 3789999999988877766655444 7899999999999988664
Q ss_pred -------------------------cEEEeecCCCCceeEEEe-------cCCcceEEECCCCCEEEEEEcC----CeEE
Q psy16316 130 -------------------------TVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGLIFGVGVNS----DTIK 173 (335)
Q Consensus 130 -------------------------~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d----~~v~ 173 (335)
.|++||+.++++...+.. ......+.|+|+|+++++.... ..|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 283 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT 283 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence 799999988765332221 1123457899999988766533 5799
Q ss_pred EEEccCCCCCceeeEEeccCCCcc--ceEEEEccCCCEEEE--EeCCC------eEEEEE-CCCCe--eeeeecccccCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECD--WTGIKFSADGKYILI--STNGS------IIRTFD-AYNGQ--CLQTLAGFLNNK 240 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~--~~~~~------~i~i~d-~~~~~--~~~~~~~~~~~~ 240 (335)
+||+.+... ............. ...++|+|||+.|+. +..++ .|++|| ..+++ +.+.+.. ..
T Consensus 284 ~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~---~~ 358 (723)
T 1xfd_A 284 LCDATTGVC--TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS---GD 358 (723)
T ss_dssp EEETTTCCE--EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC---SS
T ss_pred EEeCCCCcc--eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec---CC
Confidence 999875321 1111111111000 136799999997775 44555 577777 34443 1344432 11
Q ss_pred CCceE-EEEcCCCcEEEEEeCC---CcEEEEECCCCe--eEEEeCCC--CCCCeEEEEeCCCCcEEEee
Q psy16316 241 GCPLE-ASFTPDSKYVISGSTD---GRIHIWNAEKGF--KVCVLDAD--HPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 241 ~~v~~-~~~sp~~~~l~tgs~d---g~v~iwd~~~~~--~~~~~~~~--h~~~v~~v~~sp~~~~~~s~ 301 (335)
..+.. ++|+|||+.|+..+.+ +.+++|++.... +...+... |...+..++|+|++++++..
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 22333 6899999998766554 789999986421 22223222 66778999999999987754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-22 Score=199.53 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=202.5
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC-CcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL-GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
+.+.+|.+.+.++.|+++ .++++++.|++++||++.. +.....+..+. .+...+|++++...+.. .++.+.+|+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~---~~~~i~~~d 271 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS---KGGSIYIFN 271 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE---ETTEEEEEC
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE---eCCEEEEec
Confidence 445899999999999998 7778888999999998765 33344443333 45667899887755443 388999999
Q ss_pred cCCCceEeeecC-----------CCCCeEEEEEC-CCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCCC
Q psy16316 94 LHDNKYIRYFPG-----------HTKKVNSLCLS-PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEG 160 (335)
Q Consensus 94 ~~~~~~~~~~~~-----------H~~~V~~~~~~-~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (335)
+...+. ..+.+ |...+.+++|+ |+|+.|++++ ++.|.+||+..+.......... ......|+ +|
T Consensus 272 ~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 272 PDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE
T ss_pred CCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC
Confidence 955443 35555 44578999999 9999999887 8899999998765433222222 33456788 99
Q ss_pred CEEEEEEcCCeEE-EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIK-LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
..++.++.+..+. +||+.... ... .. .+...+..++|+|||++|++++.++.|++||+.+++....+.+ +
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~---~~~--l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~ 419 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGK---AEK--FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---R 419 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCC---EEE--CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---S
T ss_pred CeEEEEECCCceEEEEECCCCC---ceE--ec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---C
Confidence 8898888877888 88876421 111 11 3345668899999999999999999999999999887665544 3
Q ss_pred CCCceEEEEcCCCcEEEEEeCCC----------cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDG----------RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg----------~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
...+..++|||||++|++++.++ .|++||+.++. ...+ ..|...+..++|+|+|+.++.++.
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEec
Confidence 44566799999999999988754 89999998876 4444 457788999999999998887763
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=168.43 Aligned_cols=240 Identities=11% Similarity=0.088 Sum_probs=168.8
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC-Ccceeeeecc-cccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL-GTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+..|.+.|.++.|+|+|++|++++ ++.|++||+++ ++.......+ ...+..++|++++...+......++..++|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 35667899999999999999999987 78999999998 7665544343 356788999998876665553344455555
Q ss_pred Ec--CCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCCCcEEEeecC--CCCceeEEEecCCcceEEECCCCCEEEEEE
Q psy16316 93 SL--HDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLR--SPNCQGIMHVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 93 ~~--~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~i~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
.+ .+++ .+.+..+ ..+.+++|+|+++.|+ +++.|+.+++|++. ++..............+.|+|++..++.++
T Consensus 114 ~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 44 4544 3444433 3489999999999776 78899999999964 333322222334455678999999877666
Q ss_pred -cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----------CeEEEEECCCCeeeeeecc
Q psy16316 168 -NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----------SIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 168 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----------~~i~i~d~~~~~~~~~~~~ 235 (335)
.++.+++|++.... .... ....+...+..++|+|++++|++++.+ ..|++||+.+++......
T Consensus 192 ~~~~~~~i~~~~~~~-~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDG-SSVE---RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp CTTSSCEEEEEETTS-SCEE---ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred cCCCCccEEEECCCC-CCcE---EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 58899999986322 1221 222333456779999999999887764 569999998876533221
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
...+...+..++|+|++++|++++.|.
T Consensus 267 ~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCcccccceECCCCCEEEEEEecc
Confidence 122345567799999999998888764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-20 Score=166.54 Aligned_cols=255 Identities=14% Similarity=0.185 Sum_probs=167.3
Q ss_pred ccCCccEEEEEECCCCCEEEEecC---CCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 18 RENTDKITSIDYSADGLLLISCSE---DDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~---Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+...+..++|+|||+ |++++. ++.|++||+++++. ...+..+...+..++|++++...+.+ ...++.+.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~-~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSA-NYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEE-ETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEE-eCCCCEEEEE
Confidence 34557788899999999 554443 79999999987753 23333455677889999987755443 3367899999
Q ss_pred EcCC-Cc--eEeeecC---------CCCCeEEEEECCCCCEEEEeeCCCcEEEeecC-CCCceeEE--Ee-cC-CcceEE
Q psy16316 93 SLHD-NK--YIRYFPG---------HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR-SPNCQGIM--HV-SG-SRPIAA 155 (335)
Q Consensus 93 ~~~~-~~--~~~~~~~---------H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~-~~~~~~~~--~~-~~-~~~~~~ 155 (335)
++.. +. .+..+.. +...+.+++|+|+++++++...++.|++||+. ++...... .. .+ ....++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9963 22 2333321 12348899999999977777789999999998 44433221 11 11 233478
Q ss_pred ECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEEeccCCC------ccceEEEEccCCCEEEE-EeCCCeEEEEECCCC
Q psy16316 156 FDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE------CDWTGIKFSADGKYILI-STNGSIIRTFDAYNG 227 (335)
Q Consensus 156 ~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~~-~~~~~~i~i~d~~~~ 227 (335)
|+|+|++++ ++..++.+.+|++.... +............ .....++|+|+|++|++ ...++.|.+|++...
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999554 45678899999987421 1111111111111 23567999999998855 456789999998732
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-CcEEEEE--CCCCeeE
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-GRIHIWN--AEKGFKV 275 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-g~v~iwd--~~~~~~~ 275 (335)
...+.+.....+...+..++|+|||++|++++.+ +.|.+|+ ..++...
T Consensus 273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 1222222222223457789999999988887764 8999994 4455443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=196.51 Aligned_cols=275 Identities=13% Similarity=0.036 Sum_probs=197.7
Q ss_pred CCccEEEEEEC-CCCCEEEEecCCCeEEEEEccCCcceeeeecccc-cceEEEEecCCCeeEEeecCCCCeEE-EEEcCC
Q psy16316 20 NTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-GVDLIRFTHAKQAAIHASTKIDDTVR-YLSLHD 96 (335)
Q Consensus 20 h~~~V~~v~~s-~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~-~~~~~~ 96 (335)
|.+.|.++.|+ |||++||+++ ++.+.+|+...+.... +..+.. .+..++|+ ++...+.++ .+..+. +|++..
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s--~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGT--REGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEE--TTEEEEEEEETTT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEE--CCCceEEEEECCC
Confidence 55679999999 9999999988 8899999998776433 344444 67778887 544433333 367777 889887
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCC-----
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSD----- 170 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~----- 170 (335)
++..... +|...+.+++|+|+|+.|++++.|+.|++||+.+++..... ...+....+.|+|+|+++++++.++
T Consensus 369 ~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 369 GKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp CCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred CCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 7655444 88899999999999999999999999999999988876655 3334446688999999988877644
Q ss_pred -----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee--------------
Q psy16316 171 -----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ-------------- 231 (335)
Q Consensus 171 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~-------------- 231 (335)
.|++||+.+.. ......+......++|+|+|++|+.++.++....|+........
T Consensus 448 ~~~~~~i~l~d~~~g~------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp SCCEEEEEEEETTTTE------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred CCCCCeEEEEECCCCc------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence 99999987521 12222333445678999999999999887777777654322100
Q ss_pred -------------------eecc-------cccCCCCceEEEEcCCCcEEEE-------------EeCCCcEEEEECCCC
Q psy16316 232 -------------------TLAG-------FLNNKGCPLEASFTPDSKYVIS-------------GSTDGRIHIWNAEKG 272 (335)
Q Consensus 232 -------------------~~~~-------~~~~~~~v~~~~~sp~~~~l~t-------------gs~dg~v~iwd~~~~ 272 (335)
.+.+ ...+...+..++|+||++++++ .+...+|++||..++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0000 0112234567899999988875 123457888999887
Q ss_pred eeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEeccc
Q psy16316 273 FKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFWIPT 311 (335)
Q Consensus 273 ~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w~~~ 311 (335)
...... ..+..++|||+|+.+++++ +.+++|...
T Consensus 602 ~~~~l~-----~~v~~~~~S~DG~~l~~~~~~~i~~~d~~ 636 (1045)
T 1k32_A 602 KVTEVK-----NNLTDLRLSADRKTVMVRKDDGKIYTFPL 636 (1045)
T ss_dssp CEEEEE-----EEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred cEEEee-----cCcceEEECCCCCEEEEEcCCcEEEEeCc
Confidence 654332 4678999999999988776 468888763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-21 Score=168.09 Aligned_cols=257 Identities=9% Similarity=0.042 Sum_probs=184.0
Q ss_pred ccceeeecc-CCc-cEEEEEECCCCCE-EEEecCCCeEEEEEccCCcceeeeecc-----cccceEEEEecCCCeeEEee
Q psy16316 11 YKVAKLFRE-NTD-KITSIDYSADGLL-LISCSEDDQIVIYDCELGTNKRTVFSK-----KYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 11 ~~~~~~~~~-h~~-~V~~v~~s~~g~~-lasgs~Dg~i~lwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 82 (335)
.++.+.+.. +.. .+..+.|+|+|++ +++++.++.|.+||+.+++....+... ...+..++|++++...+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 344455542 322 4789999999975 467778899999999998876655432 12567788998877655553
Q ss_pred cC----------CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc
Q psy16316 83 TK----------IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP 152 (335)
Q Consensus 83 ~~----------~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~ 152 (335)
.. .++.+.+||+.+++.+..+.. ...+.+++|+|++++|+.+ ++.|.+||+.+++....+.......
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~ 177 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA 177 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT
T ss_pred cccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC
Confidence 21 479999999999888877764 4567889999999988877 6899999999877655443332112
Q ss_pred eEEECCCCCEEEEEEc-CC-----------------------eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 153 IAAFDPEGLIFGVGVN-SD-----------------------TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~-d~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
...++|++..+..... ++ .+.+||+.+.+. ..... ........+++|+|+++
T Consensus 178 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~-~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREV-RIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEE-EECSSCEEEEEECTTSS
T ss_pred CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEeec-CCCCCceeeEEECCCCC
Confidence 2367888775543322 22 468999876432 11221 11223456799999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 209 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
+++++ ++.|++||+.+++....+.. ...+..++|+|++++|++++.++.|++||..++.....++.
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEe--CCeEEEEECCCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99888 68999999999987766643 23467899999999999999999999999998877766643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-21 Score=167.17 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=177.6
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
.+++++++.++++++.|++|++||+.+++....+.... ..+..+++++++...+ ++...++.+.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~-v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY-VLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE-EEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEE-EEeCCCCcEEEEeCCCCcEEEEEE
Confidence 45688999999999999999999999998777665432 2577888988775443 444568999999999998877765
Q ss_pred CC------CCCeEEEEECCCCCEEEEeeCC------------CcEEEeecCCCCc---eeEEEecCCcceEEECCCCCEE
Q psy16316 105 GH------TKKVNSLCLSPIDDTFISGSYD------------KTVRLWDLRSPNC---QGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 105 ~H------~~~V~~~~~~~~~~~l~s~s~D------------~~i~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
.+ ...+.+++|+|++++|++++.+ +.|.+||+.+++. ............++++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~ 162 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 162 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEE
Confidence 32 2337899999999999998866 9999999987443 2333333344567799999944
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEecc---------------------------------------------------
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAA--------------------------------------------------- 192 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------------------------------------------------- 192 (335)
+ ++ +.|.+||+.+... ...+....
T Consensus 163 ~-~~--~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 163 V-AG--PDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp E-ES--SSEEEECTTTCCE--EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred E-cc--CcEEEEeCCCCce--eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 4 43 4499999875321 11111000
Q ss_pred --------------CCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 193 --------------EKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 193 --------------~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
.....+.+++++| ++++++++ ++.|.+||+.+++..+.+.. ...+..++|+|++++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEE
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEE
Confidence 0001234677889 99999888 78999999999987776642 123568999999998888
Q ss_pred EeCCCcEEEEECCCCeeEEEeCC
Q psy16316 258 GSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
++.++.|++||..++..+..++.
T Consensus 312 ~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ESBSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCCeEEEEeccccceeeeeec
Confidence 88899999999998887766643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-21 Score=170.82 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=194.3
Q ss_pred cceeeeccCCccEEE-----EEECCCCCEEEEecC-CC--eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 12 KVAKLFRENTDKITS-----IDYSADGLLLISCSE-DD--QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~-----v~~s~~g~~lasgs~-Dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
...+.+..|.+.... .+|+|||++||.++. |+ .|.+||+++++.......+...+....|++++...++..
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~- 99 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK- 99 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE-
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe-
Confidence 344567777776666 889999999998887 77 488889988876554444444444567999877655444
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEE--ECCCCCEEEEe----------------------eCCCcEEEeecCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLC--LSPIDDTFISG----------------------SYDKTVRLWDLRSP 139 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~--~~~~~~~l~s~----------------------s~D~~i~vWd~~~~ 139 (335)
.+..+.+||+.+++....+..+...+.... ++|++..++.. +.+..|.+||+.++
T Consensus 100 -~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 100 -DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp -TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred -CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 467999999999988777776666554444 48899888742 34578999999988
Q ss_pred CceeEEEecCCcceEEECC-CCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCC-ccceEEEEccCCCEEE
Q psy16316 140 NCQGIMHVSGSRPIAAFDP-EGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKE-CDWTGIKFSADGKYIL 211 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~ 211 (335)
+...+...........|+| +|+.++....+ ..|.++|..... ...+ ..... ..+...+|+|||+.|+
T Consensus 179 ~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l--~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 179 ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKV--KTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEES--CCCCTTEEEEEEEECTTSSCEE
T ss_pred ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEe--eeCCCCcccccceECCCCCEEE
Confidence 7665555544456678999 99888777653 367777765421 1111 11111 2345688999999776
Q ss_pred EEeC--CC---eEEEEECCCCeeee--eecccccCCCCceEEEEcCCCcEEEEE---------eCCCcEEEEECCCCeeE
Q psy16316 212 ISTN--GS---IIRTFDAYNGQCLQ--TLAGFLNNKGCPLEASFTPDSKYVISG---------STDGRIHIWNAEKGFKV 275 (335)
Q Consensus 212 ~~~~--~~---~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~tg---------s~dg~v~iwd~~~~~~~ 275 (335)
..+. +. .|++||+.+++... .+.++......+....|+|||+.|+.. ..+..|++||..++...
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 254 YVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp EEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred EEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 5433 22 39999999886422 222110000011224799999988754 45678999999887654
Q ss_pred EEeCCCCCC-----------CeEEEEeCCCCcEEEeee---ceeEEecccccc
Q psy16316 276 CVLDADHPS-----------PVQTIQFNPKFNMMASAC---TNLAFWIPTYLS 314 (335)
Q Consensus 276 ~~~~~~h~~-----------~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~ 314 (335)
... .|.. .+..++|+|+|+.++.++ +...+|..+..+
T Consensus 334 ~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 334 RVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred Eec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 332 2333 578899999998877664 456778665544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-19 Score=157.82 Aligned_cols=281 Identities=12% Similarity=0.180 Sum_probs=179.7
Q ss_pred CCCEEEEe----cCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecC--CCCeEEEEEcCC--Cce--
Q psy16316 32 DGLLLISC----SEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK--IDDTVRYLSLHD--NKY-- 99 (335)
Q Consensus 32 ~g~~lasg----s~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~--~~~-- 99 (335)
+..+++.| +.++.|.+|+++ +++.......+...+..++|++++...+.++.. .++.+.+|++.. ++.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 33445555 457899999774 444332221255567778999987655554432 347999998865 433
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCcee----EEEecCC-----------cceEEECCCCCEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQG----IMHVSGS-----------RPIAAFDPEGLIF 163 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~ 163 (335)
+.....+......+++ +++.|+.++ .+++|.+||+....... .....+. ...++++|+|+++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 3344445567778888 677776665 68999999997543221 1111111 1347899999855
Q ss_pred EE-EEcCCeEEEEEccCCCC----Cceee----EEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCee--ee
Q psy16316 164 GV-GVNSDTIKLYDVRSFDK----GPFSN----FKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQC--LQ 231 (335)
Q Consensus 164 ~~-~~~d~~v~iwd~~~~~~----~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~--~~ 231 (335)
++ +..++.+.+|++..... ..+.. .............++|+|+|++++++. .++.|.+|++.+++. ..
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 54 44578999999875332 10110 111122233456899999999888777 578999999987754 22
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeC--CCcEEEEECC--CCe--eEEEeCCCCCCCeEEEEeCCCCcEEEeee---
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGST--DGRIHIWNAE--KGF--KVCVLDADHPSPVQTIQFNPKFNMMASAC--- 302 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~--dg~v~iwd~~--~~~--~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--- 302 (335)
.+.....+...+..++|+|||++|++++. ++.|.+|++. ++. ....+.. ...+..++|+|+|++++.++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCC
Confidence 23222222334568999999998866665 4889999985 344 2333332 45678999999999877765
Q ss_pred ceeEEecccccccc
Q psy16316 303 TNLAFWIPTYLSNH 316 (335)
Q Consensus 303 ~~~~~w~~~~~~~~ 316 (335)
+.+.+|..+...+.
T Consensus 328 ~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 328 NVIQIFERDQATGL 341 (361)
T ss_dssp TEEEEEEECTTTCC
T ss_pred CCEEEEEEECCCCc
Confidence 56889877665543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-19 Score=159.20 Aligned_cols=252 Identities=11% Similarity=0.118 Sum_probs=166.6
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEcc-CCcceeeeecc-cccceEEEEecCCCeeEEeecC-------------
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCE-LGTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTK------------- 84 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------- 84 (335)
+...+..++|+|||++|++++.+ +|.+||++ +++........ ......+++++++...+++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 66543322111 1224456777776543343332
Q ss_pred CCCeEEEEEcC-CCceEeeec----CCCCCeEEEEECCCCCEEEEee-CCCcEEEeecC-CCCceeEEEe-----cCCcc
Q psy16316 85 IDDTVRYLSLH-DNKYIRYFP----GHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLR-SPNCQGIMHV-----SGSRP 152 (335)
Q Consensus 85 ~d~~i~~~~~~-~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~-~~~~~~~~~~-----~~~~~ 152 (335)
.++.+.+|++. .++....+. .+...+.+++|+|+|++|+++. .++.|++||+. +++....... .....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 58899999997 455544333 2557899999999999887765 47899999998 6664332221 12234
Q ss_pred eEEECCCCCEEEEEEc-CCeEEEEEccCCCCCce---eeEEeccCC----Cc------cceEEE-EccCCCEEEEEeCCC
Q psy16316 153 IAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPF---SNFKFAAEK----EC------DWTGIK-FSADGKYILISTNGS 217 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~---~~~~~~~~~----~~------~~~~~~-~s~~~~~l~~~~~~~ 217 (335)
.++|+|+|++++++.. ++++.+|++........ ......... .. ...+++ |+|||++|+++..+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 5789999998877664 68999998753211111 111111111 11 356899 999999988776432
Q ss_pred ------eEEEEECC-CCeeeeeecccccCCCCceEEEEcC---CCcEEEEEeCC-CcEEEEECCCC
Q psy16316 218 ------IIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTP---DSKYVISGSTD-GRIHIWNAEKG 272 (335)
Q Consensus 218 ------~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~tgs~d-g~v~iwd~~~~ 272 (335)
.|.+|++. +++..............+..++|+| ||++|++++.+ ++|.+|+....
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999986 5654321110111223355689999 89999999875 89999998655
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-19 Score=158.60 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=178.0
Q ss_pred ccceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccc---------cceEEEEecCCCeeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKY---------GVDLIRFTHAKQAAIH 80 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 80 (335)
.++.+.+... ..+..+.|+|+|+ +++++..++.|.+||.++++....+..+.. .+..+++++++...++
T Consensus 79 ~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 157 (353)
T 3vgz_A 79 LEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI 157 (353)
T ss_dssp CCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE
T ss_pred CeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE
Confidence 3344444433 3477899999999 455667789999999999987776654322 2567899988877666
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-----CcceEE
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-----SRPIAA 155 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~~~ 155 (335)
+..+.++.+.+||+.+++.+..+..+...+.+++|+|+++.|+.++.|+.|.+||+.+++......... ....++
T Consensus 158 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 158 SGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp EEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE
T ss_pred EecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEE
Confidence 554568899999999999998888677778999999999999999999999999999887665554311 123468
Q ss_pred ECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeee
Q psy16316 156 FDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 156 ~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~ 233 (335)
++|+++.+.++. .++.|.+||+.+.. ....+.. .. ...++|+|++++++++. .++.|.+||+.+++.+..+
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGN--ILAKVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCC--EEEEEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 999998665554 45899999997632 2222221 11 14589999999777666 6899999999999887766
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
.. ...+..++|+|+|++|+.+..++
T Consensus 311 ~~----~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 311 DT----PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EC----CSEEEEEEECTTSCEEEEEEECC
T ss_pred ec----CCCCCeEEEcCCCCEEEEEEccc
Confidence 43 23467899999999776666554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=180.35 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=185.2
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccc---cceEEEEecCCCeeEEeec-------CCCCeEEEEEcC
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY---GVDLIRFTHAKQAAIHAST-------KIDDTVRYLSLH 95 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~d~~i~~~~~~ 95 (335)
.+.|+|||++++++ .|++|++||+.+++....+..+.. .+..++|+|++...++++. +.++.+++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 78999999766665 599999999999887665544433 4889999999887665554 236899999999
Q ss_pred CCceE--eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-------------------CcceE
Q psy16316 96 DNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-------------------SRPIA 154 (335)
Q Consensus 96 ~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-------------------~~~~~ 154 (335)
+++.+ ..+ ...+.+++|+|+|+.|+.++ |+.|++||+.++....+..... ....+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 98763 222 25688999999999999985 8899999998876543221110 11367
Q ss_pred EECCCCCEEEEEEcCC----------------------------------eEEEEEccCCCCCceeeEEe---ccCCCcc
Q psy16316 155 AFDPEGLIFGVGVNSD----------------------------------TIKLYDVRSFDKGPFSNFKF---AAEKECD 197 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~----------------------------------~v~iwd~~~~~~~~~~~~~~---~~~~~~~ 197 (335)
.|+|+|+.++.++.|. .+.+||+.+........+.. ...+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 8999999999887552 78889886521100001100 0123334
Q ss_pred ceEEEEccCCCEEEEEeCC----CeEEEEE----CCCCeeeeeec-ccccCCCCce-----EEEEcCCCcEEE--EEeCC
Q psy16316 198 WTGIKFSADGKYILISTNG----SIIRTFD----AYNGQCLQTLA-GFLNNKGCPL-----EASFTPDSKYVI--SGSTD 261 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~~----~~i~i~d----~~~~~~~~~~~-~~~~~~~~v~-----~~~~sp~~~~l~--tgs~d 261 (335)
+..++|+||++++++.... ..|++|| +.++++...+. ....+...+. .+.|+|||+.|+ +...+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 6789999998776664432 2488999 88877654441 0011222333 678999999554 45455
Q ss_pred C--cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-------ceeEEecccc
Q psy16316 262 G--RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-------TNLAFWIPTY 312 (335)
Q Consensus 262 g--~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-------~~~~~w~~~~ 312 (335)
| .|++|+...+.. ..+. .+...+..+.++ ++..++... +..++|..+.
T Consensus 335 g~~~l~~~~~~~~~~-~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 335 GYKHIHYIKDTVENA-IQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SCEEEEEESSCSTTC-EECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CceEEEEEECCCCce-Eecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 5 466677766553 3343 345567888877 776655443 3478997755
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=164.75 Aligned_cols=204 Identities=7% Similarity=0.075 Sum_probs=147.8
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----------cee-----eeecccccceEEEEecCCCeeEEe--e
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----------NKR-----TVFSKKYGVDLIRFTHAKQAAIHA--S 82 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~ 82 (335)
+...++.+++++++.++++++.|+ +++|+..... ... ....+...+..++|++++...+++ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 445688999999999999999998 8998764210 000 011234468899999886543322 7
Q ss_pred cCCCCeEEEEEcCCC--------c---eEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEE-EecC
Q psy16316 83 TKIDDTVRYLSLHDN--------K---YIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSG 149 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~--------~---~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~ 149 (335)
++.|+.|++||+.+. + .++.+.+|...|.+++|+|+ +++|++++.|++|++||++++...... .+..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 788999999998754 1 25667889999999999998 789999999999999999987543222 2234
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc----CCCccceEEEEccCCCEEEEEe-CC------Ce
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----EKECDWTGIKFSADGKYILIST-NG------SI 218 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~-~~------~~ 218 (335)
.+..++|+|+|+++++|+.|++|++||++. . ....+.... ++...+.+++|++++.++++.+ .+ ..
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~--~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-Q--EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTC-C--EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccCC-c--ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 566789999999999999999999999872 1 111111111 1223678899999988876543 33 24
Q ss_pred EEEEECCCC
Q psy16316 219 IRTFDAYNG 227 (335)
Q Consensus 219 i~i~d~~~~ 227 (335)
+++|++.+.
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899999864
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-18 Score=152.08 Aligned_cols=276 Identities=10% Similarity=0.088 Sum_probs=190.7
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeecc------cccceEEEEec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSK------KYGVDLIRFTH 73 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~ 73 (335)
..++...+..+..+ .+.|+|||++|++++ .|++|.+||..+.+....+... ......+++++
T Consensus 40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence 34555667666665 899999999998886 3778999999988877766432 23466788999
Q ss_pred CCCeeEEeecCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCC-CCceeEEE----
Q psy16316 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS-PNCQGIMH---- 146 (335)
Q Consensus 74 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~-~~~~~~~~---- 146 (335)
++...+.+....++.|.+||+.+++.+.. +.. .....+.+.|++ ..+++.+.||.+.+|++.. ++.....+
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 88776665544478999999999988877 652 222345677875 6788999999999999865 43331111
Q ss_pred --ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc----C---CCccceEEEEccCCCEEEEEeC--
Q psy16316 147 --VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----E---KECDWTGIKFSADGKYILISTN-- 215 (335)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----~---~~~~~~~~~~s~~~~~l~~~~~-- 215 (335)
.......+...+++..++..+.++.+.++|+............... . .......++|+|+++.++++..
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~ 275 (361)
T 2oiz_A 196 FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD 275 (361)
T ss_dssp SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence 0000001123355666666677889999998642211111111000 0 0011123789999998887643
Q ss_pred ---------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC--eeEEEeCCCCCC
Q psy16316 216 ---------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG--FKVCVLDADHPS 284 (335)
Q Consensus 216 ---------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~--~~~~~~~~~h~~ 284 (335)
...|.+||+.+++.+.++..+. +..++|+|||++|++++. +.|.+||..++ +.+..+. .+..
T Consensus 276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~ 348 (361)
T 2oiz_A 276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAE 348 (361)
T ss_dssp CCTTCTTCCCSEEEEEETTTTEEEEEEECTT-----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCS
T ss_pred CCcccccCCCceEEEEECCCCcEEEEEecCC-----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCC
Confidence 3489999999999888876532 778999999999999887 99999999999 8777763 2445
Q ss_pred CeEEEEeCCCCc
Q psy16316 285 PVQTIQFNPKFN 296 (335)
Q Consensus 285 ~v~~v~~sp~~~ 296 (335)
.-..++|+|+|.
T Consensus 349 ~P~~~~~~p~G~ 360 (361)
T 2oiz_A 349 ASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEECCCSC
T ss_pred CcEEEEecCCCC
Confidence 567899999985
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=167.27 Aligned_cols=202 Identities=12% Similarity=0.167 Sum_probs=148.6
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC----------c------eeEEEecCCcceEEECCCCCEEE----EE
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN----------C------QGIMHVSGSRPIAAFDPEGLIFG----VG 166 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~----~~ 166 (335)
...++.+++++++.++++++.|+ +++|+..... . ...+.....+..++|+|++++++ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 45688999999999999999988 8998753110 0 01122334466789999999999 67
Q ss_pred EcCCeEEEEEccCC-----CC-CceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 167 VNSDTIKLYDVRSF-----DK-GPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 167 ~~d~~v~iwd~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
+.|++|++||+++. .. .+.........+...+.+++|+|+ +.+|++++.|+.|++||++++.......+ +
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~---~ 191 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP---S 191 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC---G
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC---C
Confidence 78999999998753 11 222233434445667899999998 88999999999999999999866544433 3
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC------CCCCCeEEEEeCCCCcEEEeee-c--------e
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------DHPSPVQTIQFNPKFNMMASAC-T--------N 304 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~------~h~~~v~~v~~sp~~~~~~s~~-~--------~ 304 (335)
...+.+++|+|+|++|++|+.||+|++||.. +.....+.. .|...|.+++|+|++.++++.+ + .
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 4568899999999999999999999999987 444433321 2334899999999988886443 2 2
Q ss_pred eEEeccccc
Q psy16316 305 LAFWIPTYL 313 (335)
Q Consensus 305 ~~~w~~~~~ 313 (335)
+++|.++..
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 788876544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=176.22 Aligned_cols=263 Identities=9% Similarity=0.082 Sum_probs=175.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccccc---c--eEEEEecCCCeeEEeecC-------CCCeEE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG---V--DLIRFTHAKQAAIHASTK-------IDDTVR 90 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~-------~d~~i~ 90 (335)
....+.|+|||++++++ |++|++||+.++++...+..+... + ..+.|+|++...++.+.. ..+.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999999997 999999999999876665555432 2 337889987765554431 115667
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------------------CCc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------------------GSR 151 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------------------~~~ 151 (335)
+||+.+++.. .+..|...+...+|+|+|+.|+.+ .|+.|++||+.++....+.... +..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 9999998754 466788899999999999999988 4789999999877654322111 111
Q ss_pred ceEEECCCCCEEEEEEcCC-eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC---C
Q psy16316 152 PIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN---G 227 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~---~ 227 (335)
....|+|||+.++..+.|. .+.+|++....... ........+++.+.|.. .....|++||+.+ +
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSS
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCC--------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCC
Confidence 2368999999888876554 48888764321110 01112234666666642 1223689999998 7
Q ss_pred e--eeeeeccc---ccCCCCceEEEEcCCCcEEEEEe----CCCcEEEEECCCCe-------eEEEeCCCCCCCeE----
Q psy16316 228 Q--CLQTLAGF---LNNKGCPLEASFTPDSKYVISGS----TDGRIHIWNAEKGF-------KVCVLDADHPSPVQ---- 287 (335)
Q Consensus 228 ~--~~~~~~~~---~~~~~~v~~~~~sp~~~~l~tgs----~dg~v~iwd~~~~~-------~~~~~~~~h~~~v~---- 287 (335)
+ ....+... ..+...+..++|+|||+.++... .+..|++||..++. ....+...|...|.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 3 22233211 12444577899999999766543 23479999988775 11111234666665
Q ss_pred -EEEeCCCCcEEE-ee
Q psy16316 288 -TIQFNPKFNMMA-SA 301 (335)
Q Consensus 288 -~v~~sp~~~~~~-s~ 301 (335)
.++|+|+|+.++ ..
T Consensus 322 ~~p~fspDG~~l~~~~ 337 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKII 337 (740)
T ss_dssp CCCEECTTSSEEEEEE
T ss_pred CCceEcCCCCEEEEEE
Confidence 789999998766 44
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-18 Score=162.90 Aligned_cols=293 Identities=9% Similarity=-0.005 Sum_probs=191.1
Q ss_pred eeeccCCccEEEEEECCCCCEEEEe--cCCCeEEEEEccCCcceeeeecccccce---------EEEEe--cCCCeeEEe
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISC--SEDDQIVIYDCELGTNKRTVFSKKYGVD---------LIRFT--HAKQAAIHA 81 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasg--s~Dg~i~lwd~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~ 81 (335)
+.+.+|...|..++|++++-++++. +.|+...||....+...+.+..+...+. ...|+ |++...++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999998888888 7789999999755555555555544444 55565 666551334
Q ss_pred ecCCCCeEEEEEcC--CCceEeeecC-----CCCCeEEEEECCCCCEEEEeeCC----------CcEEEeecCC------
Q psy16316 82 STKIDDTVRYLSLH--DNKYIRYFPG-----HTKKVNSLCLSPIDDTFISGSYD----------KTVRLWDLRS------ 138 (335)
Q Consensus 82 ~~~~d~~i~~~~~~--~~~~~~~~~~-----H~~~V~~~~~~~~~~~l~s~s~D----------~~i~vWd~~~------ 138 (335)
+...+..|.++++. .....+.+.. |...+.+++|+|+|+.|++++.| ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 44345667777765 2033444554 67789999999999999999887 6899999987
Q ss_pred CCceeEE-EecCCcceEEECCCCCEEEEEEcC--------CeEEEEEcc-CCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 139 PNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS--------DTIKLYDVR-SFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d--------~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
+....+. ..........|+|+|+.++.++.+ ..|.+||+. +........+ .......+..++|+|||+
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l--~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL--LGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE--EEETTBCEEEEEECTTSC
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe--CCCCCceEcceEECCCCe
Confidence 4433222 112223346799999998877654 379999987 2210011111 122234567899999999
Q ss_pred EEEEEeCCC--eEEEEECCCCeeeeeecccccCCC-----CceEEEEcCCCcEEEEEeCCCcEEEE--ECCCCeeEEEeC
Q psy16316 209 YILISTNGS--IIRTFDAYNGQCLQTLAGFLNNKG-----CPLEASFTPDSKYVISGSTDGRIHIW--NAEKGFKVCVLD 279 (335)
Q Consensus 209 ~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~tgs~dg~v~iw--d~~~~~~~~~~~ 279 (335)
+++++..++ .|++||+.+++.......+..... .+..++|+|+++++++++. +.++|| |...+. ...+.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 777777777 677777767664433222111100 0346899999999999999 999999 554454 44453
Q ss_pred CCCCCCeEEE-EeCCCCcEEEeee--ceeEEecccc
Q psy16316 280 ADHPSPVQTI-QFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 280 ~~h~~~v~~v-~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
.|.+.+..+ +++++.-++++++ ....+|..+.
T Consensus 333 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 333 -GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp -SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred -CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 466777777 5555444444444 2356665543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-18 Score=148.76 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=159.7
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCC-CCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCC----
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHT-KKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGS---- 150 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~---- 150 (335)
..++++++.++.|.+||+.+++.++.+..+. ..+..++|+|+++.+ +++..++.|.+||+.+++....+.....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 3455666679999999999999888877543 257899999999855 5666799999999998776655543221
Q ss_pred ---cceEEECCCCCEEEEEEcC------------CeEEEEEccCCCCCc-eeeEEeccCCCccceEEEEccCCCEEEEEe
Q psy16316 151 ---RPIAAFDPEGLIFGVGVNS------------DTIKLYDVRSFDKGP-FSNFKFAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 151 ---~~~~~~~~~~~~~~~~~~d------------~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
...+.++|+|++++++..+ +.|.+||+.+..... ..... ....+.+++|+|+++ +++++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~-l~~~~ 165 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQVYLMRAADDGS-LYVAG 165 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSSCCCEEECTTSC-EEEES
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCcccceeECCCCc-EEEcc
Confidence 3567899999998888765 899999987632111 11111 112356789999999 55553
Q ss_pred CCCeEEEEECCCCeeeeeeccccc--------------------------------------------------------
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAGFLN-------------------------------------------------------- 238 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~~~~-------------------------------------------------------- 238 (335)
+.|++||+.+++....+.....
T Consensus 166 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
T 1jmx_B 166 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 243 (349)
T ss_dssp --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred --CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC
Confidence 3499999998887665532210
Q ss_pred ---------CCCCceEEEEcC-CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeE
Q psy16316 239 ---------NKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLA 306 (335)
Q Consensus 239 ---------~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~ 306 (335)
....+..++|+| ++++++++ ++.|++||+.++.....+..+ ..+..++|+|+++++++++ +.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 244 KTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp CEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEE
T ss_pred cEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEE
Confidence 001344667889 99999888 889999999998876666533 3567999999998776654 5688
Q ss_pred Eecc
Q psy16316 307 FWIP 310 (335)
Q Consensus 307 ~w~~ 310 (335)
+|.+
T Consensus 320 v~d~ 323 (349)
T 1jmx_B 320 VFNP 323 (349)
T ss_dssp EEET
T ss_pred EEec
Confidence 8865
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=156.42 Aligned_cols=280 Identities=9% Similarity=-0.004 Sum_probs=179.5
Q ss_pred EEEEEECCCCCEEEEecCC---CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 24 ITSIDYSADGLLLISCSED---DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
+..+.|+|||++|+..+.+ ..|.+||+++++..............+.|++++...++.+ .++.+.+|++.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~--~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK--NELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE--TTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE--cCCcEEEEECCCCCcE
Confidence 7788999999998776543 4788889988765433222222233367888876554443 4568999999988776
Q ss_pred eeecCCCCCeEE-------------------EEECCCCCEEEEe-----eCCCcEEEeecCCCCceeEEEecCCcceEEE
Q psy16316 101 RYFPGHTKKVNS-------------------LCLSPIDDTFISG-----SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF 156 (335)
Q Consensus 101 ~~~~~H~~~V~~-------------------~~~~~~~~~l~s~-----s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~ 156 (335)
..+..+...... +.++|+++.++.+ ..+..|.+||+.+++...............|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 666655443222 3467777765544 4677899999998876655544444556788
Q ss_pred CC-CCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEEC
Q psy16316 157 DP-EGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDA 224 (335)
Q Consensus 157 ~~-~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~ 224 (335)
+| ++..++..+.+ ..|.+||+.... ...+.. ......+..++|+|+|++|+..+.+ +.|++||+
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 99 78766665543 357778875421 111110 1112235678999999987766443 44999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcC-CCcEEEEEe----------------CCCcEEEEECCCCeeEEEeCCCCCC---
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVISGS----------------TDGRIHIWNAEKGFKVCVLDADHPS--- 284 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~tgs----------------~dg~v~iwd~~~~~~~~~~~~~h~~--- 284 (335)
.+++... +.... . .. +.|+| ||+++++++ .+..|++||..++...... . +..
T Consensus 272 ~~g~~~~-l~~~~---~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~-~~~~~~ 343 (396)
T 3c5m_A 272 ETLENEE-VMVMP---P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC-K-HSTSWD 343 (396)
T ss_dssp TTCCEEE-EEECC---S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE-E-CCCCCC
T ss_pred CCCCeEE-eeeCC---C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc-C-CCCccc
Confidence 8876533 22111 1 12 78999 999888765 3478999999877543322 1 332
Q ss_pred --------CeEEEEeCCCCcEEEeee---ceeEEeccccccccc
Q psy16316 285 --------PVQTIQFNPKFNMMASAC---TNLAFWIPTYLSNHQ 317 (335)
Q Consensus 285 --------~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~~~ 317 (335)
.+..++|+|+|+.++.++ +...+|..+.....+
T Consensus 344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 344 VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 256789999998877664 356788766554443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-17 Score=143.19 Aligned_cols=245 Identities=11% Similarity=0.102 Sum_probs=174.1
Q ss_pred CCccEEEEEECCCCCEEEEecCC------------------------CeEEEEEccCCcceeeeec-ccccceEEEEecC
Q psy16316 20 NTDKITSIDYSADGLLLISCSED------------------------DQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHA 74 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~D------------------------g~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (335)
--+.|.+|+++|+|+++++.+.+ ++|.+||.++++....... +-..+..+++.++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 45779999999999999998887 5799999988887654432 2235677888776
Q ss_pred CCeeEEeecCCCCeEEEEEcCCCc-eEeee---------cCCCCCeEEEEECC-CCCEEEEee-CCCcEEEeecCCCCce
Q psy16316 75 KQAAIHASTKIDDTVRYLSLHDNK-YIRYF---------PGHTKKVNSLCLSP-IDDTFISGS-YDKTVRLWDLRSPNCQ 142 (335)
Q Consensus 75 ~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~---------~~H~~~V~~~~~~~-~~~~l~s~s-~D~~i~vWd~~~~~~~ 142 (335)
+. ++++...++.|++|+..... .+..+ .++......++++| +++++++.+ .++.|++||. .+...
T Consensus 102 g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 102 GN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp SC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred CC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 55 55666668899999986542 44444 35566789999999 788888887 6999999994 45544
Q ss_pred eEEEecCC-----------cceEEECCC-CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-----
Q psy16316 143 GIMHVSGS-----------RPIAAFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA----- 205 (335)
Q Consensus 143 ~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----- 205 (335)
..+...+. ...++++|+ +.++++...++.|++||..+.. ....+.. .........++++|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~-~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKH-ASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECC-TTTTTCEEEEEEETTEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEec-cccCCCcceeeecCCEEEE
Confidence 44422111 235788898 8888888889999999987321 1222211 12223456788888
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 206 -DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 206 -~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+++..++...+..|++|+..+++.+..+.....+...+..++++|+|.++++...+++|++|+..
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 23222222334589999999998887764323344567899999999999999999999999974
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-16 Score=135.83 Aligned_cols=244 Identities=12% Similarity=0.162 Sum_probs=169.9
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec------ccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS------KKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+|-..+.+++++++|.++++.+.++.|++||.+ ++....+.. +...+..+++.......+++....++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556789999999999999999999999999987 544444321 123456677743333333333233789999
Q ss_pred EEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec---CCcceEEECCCCCEEEEEE
Q psy16316 92 LSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS---GSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 92 ~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 167 (335)
|+ .+++.+..+. .+...+.++++.|+++++++...++.|.+||.. ++....+... .....++++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 5666666664 345678999999999988888889999999964 3333333221 1234578999999888888
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-eEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.++.|.+||... .....+.. ........+++++|+|+++++...++ .|.+||. +++.+..+..+.. ...+..+
T Consensus 183 ~~~~i~~~~~~g---~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~-~~~~~~i 256 (286)
T 1q7f_A 183 RAHCVKVFNYEG---QYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK-HAQCFDV 256 (286)
T ss_dssp GGTEEEEEETTC---CEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC-CSCEEEE
T ss_pred CCCEEEEEcCCC---CEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC-CCcceeE
Confidence 889999999743 11221111 11113457899999999888877775 9999995 4556666644322 2246789
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
+++|+|+++++ +.|++|++|+...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCcEEEE-CCCCeEEEEEccc
Confidence 99999988887 5799999998754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-18 Score=161.22 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=168.4
Q ss_pred eeccCC-ccEEEEEECCCCCEEEEecC---CCeEEEEEccC--CcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 16 LFRENT-DKITSIDYSADGLLLISCSE---DDQIVIYDCEL--GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 16 ~~~~h~-~~V~~v~~s~~g~~lasgs~---Dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+..|. ..|..+.|+|| +++++++. +...+||.+.. ......+. ...+....+|+++++..+++++..++..
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~ 135 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEAVVFTGATEDRVA 135 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT-TSCSBEEEEEEECSSCEEEEEECSSCEE
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccccc-CCCCceeeeeCCCCCeEEEEecCCCCce
Confidence 344555 68999999999 88887775 56677776654 32222222 2223456688998887777777666655
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+||+.+++..+....+. .+++|+|+|+.|++++.| +.|++||+.+++........+......|+|||+.+++
T Consensus 136 -l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 136 -LYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp -EEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE
T ss_pred -EEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE
Confidence 99999887766555433 789999999999998888 8899999988876644333344556789999999998
Q ss_pred EEcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEE--------EccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 166 GVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK--------FSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 166 ~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
+..++ .|.+||+.+.. .. ....+...+..++ |+|||..+++++.++.+++|++ ++..+..
T Consensus 212 ~~~~~~~~i~~~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-- 281 (582)
T 3o4h_A 212 LETAREARLVTVDPRDGS---VE---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-- 281 (582)
T ss_dssp EECSSCEEEEEECTTTCC---EE---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC--
T ss_pred ccCCCeeEEEEEcCCCCc---EE---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC--
Confidence 88888 89999987532 11 2222333334455 9999988888999999999999 6654422
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCc---EEEEECC
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGR---IHIWNAE 270 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~---v~iwd~~ 270 (335)
...+..++|+ +++++++++.+.. +++||..
T Consensus 282 ----~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 282 ----QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ----CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 2346678999 9999999888754 6777654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=170.44 Aligned_cols=238 Identities=10% Similarity=0.032 Sum_probs=160.7
Q ss_pred EEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCC---CeEEEEECCCCCEEEEeeC---------CCcEEEee
Q psy16316 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK---KVNSLCLSPIDDTFISGSY---------DKTVRLWD 135 (335)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~---------D~~i~vWd 135 (335)
.++|++++ .+++++ .|+.+++||+.+++....+.+|.. .|.+++|+|+|++|++++. |+.|++||
T Consensus 20 ~~~~s~dg--~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQ--EYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSS--EEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCC--eEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 56787776 344444 489999999999998888876654 4899999999999999876 79999999
Q ss_pred cCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCC----------------ccce
Q psy16316 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE----------------CDWT 199 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~----------------~~~~ 199 (335)
+.+++...............|+|+|+.++.+. ++.|++||+.+.... .+....... ....
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~---~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF---QITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE---ECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE---EEecCCCcCCeEcccccceeeeecccCcc
Confidence 98876521111223455689999999998885 689999998753321 111000000 1114
Q ss_pred EEEEccCCCEEEEEeCCC----------------------------------eEEEEECCCCeee--eeec---ccccCC
Q psy16316 200 GIKFSADGKYILISTNGS----------------------------------IIRTFDAYNGQCL--QTLA---GFLNNK 240 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~~~----------------------------------~i~i~d~~~~~~~--~~~~---~~~~~~ 240 (335)
+++|||||++|+.++.+. .|++||+.+++.. ..+. ....+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 799999999999876442 7889999887642 1111 112244
Q ss_pred CCceEEEEcCCCcEEEEEeCC----CcEEEEE----CCCCeeEEEeC---CCCCCCeE-----EEEeCCCCcEEEe--e-
Q psy16316 241 GCPLEASFTPDSKYVISGSTD----GRIHIWN----AEKGFKVCVLD---ADHPSPVQ-----TIQFNPKFNMMAS--A- 301 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~d----g~v~iwd----~~~~~~~~~~~---~~h~~~v~-----~v~~sp~~~~~~s--~- 301 (335)
..+..++|+||++++++.... ..|.+|| ..++....... ..|.+.+. .++|+|+|+.++. .
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 456789999998887774432 2488899 76654332221 35677777 8999999986543 2
Q ss_pred -eceeEEecccc
Q psy16316 302 -CTNLAFWIPTY 312 (335)
Q Consensus 302 -~~~~~~w~~~~ 312 (335)
++..++|..+.
T Consensus 333 ~~g~~~l~~~~~ 344 (719)
T 1z68_A 333 KDGYKHIHYIKD 344 (719)
T ss_dssp TTSCEEEEEESS
T ss_pred cCCceEEEEEEC
Confidence 23445555444
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-16 Score=141.11 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=168.5
Q ss_pred EEEecC--CCeEEEEEc--cCCcceee--ee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcC-CCceEeeec--C
Q psy16316 36 LISCSE--DDQIVIYDC--ELGTNKRT--VF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH-DNKYIRYFP--G 105 (335)
Q Consensus 36 lasgs~--Dg~i~lwd~--~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~--~ 105 (335)
|+.|+. ++.|.+|++ ++++.... .. .....+..+++++++...+.+. .+ .+.+|++. +++...... .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~--~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA--MK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE--BT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc--cc-eEEEEEECCCCCEEEeeEeec
Confidence 344443 356777765 34433211 11 1223567889998876544333 34 89999997 776654332 1
Q ss_pred CCCCeEEEEECCCCCE--EEEee-------------CCCcEEEeecCC-CCceeEEE-----ecCCcceEEECCCCCEEE
Q psy16316 106 HTKKVNSLCLSPIDDT--FISGS-------------YDKTVRLWDLRS-PNCQGIMH-----VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 106 H~~~V~~~~~~~~~~~--l~s~s-------------~D~~i~vWd~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 164 (335)
+ +.+.+++|+|+++. +++++ .++++++|++.. ++...... .......+.++|+|++++
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 1 23567899999984 55653 699999999974 55433332 122345678999999777
Q ss_pred EEE-cCCeEEEEEcc-CCCCCceeeEE-eccC-CCccceEEEEccCCCEEEEEeC-CCeEEEEECC--CCeeee---eec
Q psy16316 165 VGV-NSDTIKLYDVR-SFDKGPFSNFK-FAAE-KECDWTGIKFSADGKYILISTN-GSIIRTFDAY--NGQCLQ---TLA 234 (335)
Q Consensus 165 ~~~-~d~~v~iwd~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~--~~~~~~---~~~ 234 (335)
++. .++.|.+||+. +.. ..... .... +......++|+|+|++++++.. ++.|.+|+.. +++... .+.
T Consensus 161 ~~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEETTTTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEcCCCCEEEEEEECCCCC---EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 665 36799999997 321 21111 1111 1234678999999999988775 6789998764 555321 221
Q ss_pred ccc----cCCC------CceEEE-EcCCCcEEEEEeCCC------cEEEEECC-CCeeEE---EeCCCCCCCeEEEEeCC
Q psy16316 235 GFL----NNKG------CPLEAS-FTPDSKYVISGSTDG------RIHIWNAE-KGFKVC---VLDADHPSPVQTIQFNP 293 (335)
Q Consensus 235 ~~~----~~~~------~v~~~~-~sp~~~~l~tgs~dg------~v~iwd~~-~~~~~~---~~~~~h~~~v~~v~~sp 293 (335)
... .+.. .+..++ |+|||++|++++.+. +|.+|++. ++.... ... .+......++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~-~~~~~~~~~a~sp 316 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-TPTSGGHSNAVSP 316 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-CSSCCTTCCCEEE
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee-cCCCCcccceecC
Confidence 111 1111 367899 999999887766432 89999986 554332 122 2444566889999
Q ss_pred ---CCcEEEeee---ceeEEecccc
Q psy16316 294 ---KFNMMASAC---TNLAFWIPTY 312 (335)
Q Consensus 294 ---~~~~~~s~~---~~~~~w~~~~ 312 (335)
+|+++++++ +++.+|..+.
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEch
Confidence 899888774 5689997654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-16 Score=137.89 Aligned_cols=268 Identities=13% Similarity=0.157 Sum_probs=180.4
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
..|.++.|++++..+++.+.++.++.|. ++....+..+...+..++|.+++. +..++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCcEEE
Confidence 4578899999999888889999999993 344444545555567788876554 55555568899999999887766
Q ss_pred eecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEEEEEc------
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFGVGVN------ 168 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------ 168 (335)
....+...+.+++++|+++++++...+ +.|.+||..++....... .......+.++|+|+++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 554567889999999999988887776 789999998776543322 1122345688999998877653
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCC-Ceeeeeec----ccccCCCC
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYN-GQCLQTLA----GFLNNKGC 242 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~-~~~~~~~~----~~~~~~~~ 242 (335)
.+.|..+|.... ....+.. ......+++|+|+++.++++ +.++.|++||..+ +.....+. ........
T Consensus 161 ~~~l~~~~~~~~---~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 161 LGGVYYVSPDFR---TVTPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp CEEEEEECTTSC---CEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred CceEEEEeCCCC---EEEEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 244555554321 1222111 11234679999999876554 4578899999863 33222211 00011134
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC-----CCCCeEEEEeCCCCcEEEee
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-----HPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~~~s~ 301 (335)
+..++++++|+++++...++.|.+||. ++.....+... |...+.+++|+|++..|..+
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEE
Confidence 667999999999888888899999998 45554444321 22267899999997655433
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=146.71 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=158.0
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEE--ecCCCeeEEe--------
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF--THAKQAAIHA-------- 81 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 81 (335)
++.+...+|...+..+.|+|||++|+.++.++.|++||+++++.......+...+....+ +++....+..
T Consensus 71 ~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 71 VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence 344555667766667889999999999999999999999998765544333333333333 4443332211
Q ss_pred ------------ecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCC------CcEEEeecCCCCce
Q psy16316 82 ------------STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYD------KTVRLWDLRSPNCQ 142 (335)
Q Consensus 82 ------------~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D------~~i~vWd~~~~~~~ 142 (335)
....+..+.+||+.+++.... ..+...+..+.|+| +++.|+.++.+ ..|.++|+..+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 123457889999998865444 45677899999999 99988877753 37788887665433
Q ss_pred eEEEecC--CcceEEECCCCCEEEEEEc-CC----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE--
Q psy16316 143 GIMHVSG--SRPIAAFDPEGLIFGVGVN-SD----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-- 213 (335)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-- 213 (335)
.+..... ......|+|+|+.++..+. ++ .|.+||+.+.......................|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3222211 1234579999986654332 22 3999999764321111111000000001234799999988864
Q ss_pred -------eCCCeEEEEECCCCeeeeeecccccCC--------CCceEEEEcCCCcEEEEEe-CCCcEEEEEC
Q psy16316 214 -------TNGSIIRTFDAYNGQCLQTLAGFLNNK--------GCPLEASFTPDSKYVISGS-TDGRIHIWNA 269 (335)
Q Consensus 214 -------~~~~~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~ 269 (335)
..+..|++||+.+++. +.+..+.... ..+..++|+|||+.|+..+ .+|...||.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 4456899999998765 3443332200 0356689999999887666 4677777654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=134.55 Aligned_cols=272 Identities=9% Similarity=-0.001 Sum_probs=178.3
Q ss_pred CCCCEEEEe------cCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCC
Q psy16316 31 ADGLLLISC------SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHD 96 (335)
Q Consensus 31 ~~g~~lasg------s~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~ 96 (335)
++++++... ..|++|.+||.++++....+.....+ .+++++++...+.+.. ..++.|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 355555443 24789999999999887766554443 7899998877766542 2467899999999
Q ss_pred CceEeeecCC------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeE-EEecCCcceEEECCCC-CEEEEE
Q psy16316 97 NKYIRYFPGH------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGI-MHVSGSRPIAAFDPEG-LIFGVG 166 (335)
Q Consensus 97 ~~~~~~~~~H------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 166 (335)
.+.+..+..+ ......++++|+|++|+.++. +++|.+||+.+++.... +...+... +.+.|++ ..+++.
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~-v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS-VIPQPNRPRSFMTI 169 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE-EEECTTSSSEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce-eEEcCCCCeeEEEE
Confidence 8888776532 245678999999999988874 68999999998765443 22222111 3355654 677778
Q ss_pred EcCCeEEEEEccCCCCCceeeEEe---ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeecc------
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKF---AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLAG------ 235 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~------ 235 (335)
+.|+.+.+|+..... ....... ..+.......+.++|++..++..+.++.+.++|+..... ...+..
T Consensus 170 ~~dg~~~~v~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDG--KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTS--SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCC--cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 888999998875311 1110000 000011111234567787777777888999999865432 111110
Q ss_pred ccc-CCCCceEEEEcCCCcEEEEEeC-----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-
Q psy16316 236 FLN-NKGCPLEASFTPDSKYVISGST-----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC- 302 (335)
Q Consensus 236 ~~~-~~~~v~~~~~sp~~~~l~tgs~-----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~- 302 (335)
... .......++|+|+++.+.++.. ...|.+||..+++.+..++.+ . ...++|+|+|++++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEEEEECS
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEEEEeCC
Confidence 000 0011123789999877665533 347999999999888888653 3 88999999999877665
Q ss_pred ceeEEecc
Q psy16316 303 TNLAFWIP 310 (335)
Q Consensus 303 ~~~~~w~~ 310 (335)
+++.+|.+
T Consensus 325 ~~v~v~D~ 332 (361)
T 2oiz_A 325 GNVNVYDI 332 (361)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 56888854
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-15 Score=129.40 Aligned_cols=258 Identities=9% Similarity=0.065 Sum_probs=170.1
Q ss_pred ccEEEEEECCCCCEEEEec---------CCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC---CCeE
Q psy16316 22 DKITSIDYSADGLLLISCS---------EDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI---DDTV 89 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs---------~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i 89 (335)
..+..+.+ ||+++|... .++.|.+||+++++.. .+ ..+..++|+|++...++++... ...+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45777888 998877642 3678999999887643 23 4577889999987665554321 2247
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---------------------------CcEEEeecCCCCce
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---------------------------KTVRLWDLRSPNCQ 142 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---------------------------~~i~vWd~~~~~~~ 142 (335)
.++++.+++..+....+. +.++.|+|+++.|+.++.+ ..|.+||+.+++..
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 777888877666555443 9999999999988887643 57899999887762
Q ss_pred eEEEecCCcceEEECCCCCEEEEEEcCC-------eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 143 GIMHVSGSRPIAAFDPEGLIFGVGVNSD-------TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
..+... ......|+|+| +++++..+. ...+|.+.. +....+... ..+. .++|+|+.|+..+.
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~~l~~~----~~~~--~~spdg~~l~~~~~ 234 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---GKEEKMFEK----VSFY--AVDSDGERILLYGK 234 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---TEEEEEEEE----ESEE--EEEECSSCEEEEEC
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---CceEEeccC----ccee--eECCCCCEEEEEEc
Confidence 222223 55667899999 777775542 445665542 122222211 2222 34999998887764
Q ss_pred C--------CeEEEEECCCCeeeeeecccccCCCCceE-EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCe
Q psy16316 216 G--------SIIRTFDAYNGQCLQTLAGFLNNKGCPLE-ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPV 286 (335)
Q Consensus 216 ~--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v 286 (335)
+ ..|.+|| +++....... +...+.. +.|+ |+ ++++++.++.++|| +.++...... .+.+.|
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~--~~~~~v 304 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA--KGRHWI 304 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE--CSSSEE
T ss_pred cccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe--cCCCeE
Confidence 3 3688888 5543322222 2234554 8899 88 99999999999999 8765544333 246789
Q ss_pred EEEEeCCCCcEEEeee--ce-eEEeccc
Q psy16316 287 QTIQFNPKFNMMASAC--TN-LAFWIPT 311 (335)
Q Consensus 287 ~~v~~sp~~~~~~s~~--~~-~~~w~~~ 311 (335)
.+++|+| .++++++ .. ..+|..+
T Consensus 305 ~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 305 MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999 5555544 22 3788765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-14 Score=122.99 Aligned_cols=245 Identities=9% Similarity=0.042 Sum_probs=162.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCC----CeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID----DTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i 89 (335)
...+.++...+.++.|+|+|++++++..++.|.+||.++++...........+..+++.+++. +.+++..+ +.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceE
Confidence 345667777889999999999888999999999999988765443333445678888887654 33333334 689
Q ss_pred EEEEcCCCceEeeec--CCCCCeEEEEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecCCcceEEECCCCC
Q psy16316 90 RYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
.+||..++.....+. .+...+.++.++|+++++++... .+.|..+|..+++.............++++|+++
T Consensus 115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999998877654443 34567999999999988887664 3556666665544433322222344578999998
Q ss_pred EE-EEEEcCCeEEEEEccCCCCCceeeE----EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 162 IF-GVGVNSDTIKLYDVRSFDKGPFSNF----KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 162 ~~-~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
.+ ++...++.|.+||+.... .....+ ...........+++++++|+++++...++.|.+||. +++.+..+...
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 54 555567899999986311 111111 000111124567999999998888777889999998 45555555432
Q ss_pred cc---CCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 237 LN---NKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 237 ~~---~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
.. +...+..++|+||++.|+.++.++
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCccccccCcceEEECCCCCEEEEEeCcc
Confidence 11 112467899999987766555553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-13 Score=113.78 Aligned_cols=277 Identities=9% Similarity=0.048 Sum_probs=185.8
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee-ecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
+..+...+.++.++++|.++++...++.|.+||.. +...... ......+..+++.+++. +.++...++.+..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC
Confidence 34566789999999999988888778999999988 5432211 11234466677665443 44444457788889876
Q ss_pred CCceE-eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 96 DNKYI-RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 96 ~~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
++.. ..+......+.++++.++++++++...++.|..||. ++........ ......+++++++.++++...++.|
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 3322 222334567899999999988888878899999998 5443322211 1223456788999988877777899
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
..||. .. ....+.. ........++++++++.+.++...++.|..||. +++.. .+.. ......+..++++|+|
T Consensus 165 ~~~~~-~g---~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 165 GRITE-SG---DITEFKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKI-PTPNARPHAITAGAGI 236 (299)
T ss_dssp EEECT-TC---CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECSTT
T ss_pred EEEcC-CC---cEEEeeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEEC-CCCCCCceeEEECCCC
Confidence 99987 32 1222211 122234568999999997777666788999999 66533 2211 1223457889999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEe
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFW 308 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w 308 (335)
+++++...++.|.+||. ++.........+...+.++++ +++.+.++.. +.+..+
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp CEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred CEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 98887777889999998 454332212234567899999 9998877763 334443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-14 Score=127.19 Aligned_cols=256 Identities=11% Similarity=0.062 Sum_probs=171.9
Q ss_pred cCCCeEEEEEccCCcceeeeecc----c--ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEE
Q psy16316 40 SEDDQIVIYDCELGTNKRTVFSK----K--YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL 113 (335)
Q Consensus 40 s~Dg~i~lwd~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~ 113 (335)
+.+++|.++|.++++....++.. . .....+.+. ... +..+...++.+.++|..+++.+..+.. ......+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~-lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i 89 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGI-GWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYI 89 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTE-EEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCE-EEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEE
Confidence 34899999999998876554321 1 112334442 333 334444678999999999999888853 4678899
Q ss_pred EECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC------CcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCcee
Q psy16316 114 CLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG------SRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFS 186 (335)
Q Consensus 114 ~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~ 186 (335)
++++++...++...++.|.+||+.+++....+.... ....+++ .++.++++.. .+++|.++|+.+.. ...
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~--~~~ 166 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK--VVD 166 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE--EEE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe--EEE
Confidence 998888655665589999999999887665554433 2223445 4555666655 48899999987632 111
Q ss_pred eEEeccCCCccceEEEEccCCCEEEEEeCC----------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 187 NFKFAAEKECDWTGIKFSADGKYILISTNG----------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
.+.. ......++++|+|++++++..+ +.|.++|..+++..+.+.... ...+..++|+|++++|.
T Consensus 167 ~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 167 ELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp EEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEE
T ss_pred EEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEE
Confidence 2211 1123568999999977766554 789999999998776654211 13578899999999888
Q ss_pred EEeCCCcEEEEECCCCeeEE--EeCCCCCCCeEEEEeCC-CCcEEEee------eceeEEeccc
Q psy16316 257 SGSTDGRIHIWNAEKGFKVC--VLDADHPSPVQTIQFNP-KFNMMASA------CTNLAFWIPT 311 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~--~~~~~h~~~v~~v~~sp-~~~~~~s~------~~~~~~w~~~ 311 (335)
++.. .|.+||..++.... .+. .+......++++| ++.+.++. .+.+.+|.++
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~-~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLE-FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBC-CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEcc--EEEEEECCCCceeeeeeec-CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 7765 89999998765421 111 1235678899999 56666665 3456666543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-14 Score=123.40 Aligned_cols=246 Identities=10% Similarity=0.051 Sum_probs=166.2
Q ss_pred cceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
...+.+..+.....++.|+|+|+ +++++..++.|.+||.+++ ...+......+..+++.+++. +.++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH--LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC--EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc--EEEEecCCCeEE
Confidence 34456667788889999999998 8889999999999999877 445544555677888877655 444554568899
Q ss_pred EEEcCCCceEeeecCC----CCCeEEEEECCCCCEEEE----eeC-------------CCcEEEeecCCCCceeEEEecC
Q psy16316 91 YLSLHDNKYIRYFPGH----TKKVNSLCLSPIDDTFIS----GSY-------------DKTVRLWDLRSPNCQGIMHVSG 149 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H----~~~V~~~~~~~~~~~l~s----~s~-------------D~~i~vWd~~~~~~~~~~~~~~ 149 (335)
+||..+++........ ...++.++++|+|++++| |+. .+.|..+|.. ++.........
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV 172 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence 9999887765443321 235678999999999888 331 2455555544 33322222222
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCce-eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF-SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
....++++|+++.+++.+.++.|.+||+... +.. ..............+++++++|++.++. ++.|.+||.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSS--SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCC--CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 2345789999998866777889999998621 112 1111111122234579999999966665 7889999986 66
Q ss_pred eeeeecccccCCCCceEEEE-cCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 229 CLQTLAGFLNNKGCPLEASF-TPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~-sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.+..+..+ .. +.+++| +|+++.|..++.++ +..++..+.
T Consensus 248 ~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEEECS---SC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEEECC---CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 66665432 23 678999 68999888888764 666666544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-14 Score=127.09 Aligned_cols=222 Identities=10% Similarity=0.058 Sum_probs=155.8
Q ss_pred CeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEEEe-------cC---CcceE
Q psy16316 87 DTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHV-------SG---SRPIA 154 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~-------~~---~~~~~ 154 (335)
+.|.+||..+++.+..+. ++......++++|+++++++.+.++.|++||..... ....+.. .. ....+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 579999999888877664 555688999999999999999999999999986542 2222211 00 12357
Q ss_pred EECC-CCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccC-CCEEEEEeCCCeEEEEEC
Q psy16316 155 AFDP-EGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSAD-GKYILISTNGSIIRTFDA 224 (335)
Q Consensus 155 ~~~~-~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~ 224 (335)
+++| ++.++++.+ .++.|.+||... .....+..... .-....+++++|+ +.++++...++.|++|+.
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSG---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTS---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCC---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence 8999 899998886 689999999532 12222211110 1112478999999 666666677889999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcC------CCcEEEEEeCCCcEEEEECCCCeeEEEeC--CCCCCCeEEEEeCCCCc
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTP------DSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~tgs~dg~v~iwd~~~~~~~~~~~--~~h~~~v~~v~~sp~~~ 296 (335)
.+++.+..+... .....+..++|+| +++.+++...+.+|++|+..++.....+. ..+......++++|+|.
T Consensus 226 ~~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 226 DTKEFVREIKHA-SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTCCEEEEECCT-TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CCCcEEEEEecc-ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 988888777432 2234567889999 33333334445589999999888777663 34667789999999998
Q ss_pred EEEeeec--eeEEecccc
Q psy16316 297 MMASACT--NLAFWIPTY 312 (335)
Q Consensus 297 ~~~s~~~--~~~~w~~~~ 312 (335)
++++... .|++|.++.
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 8887754 466676543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-14 Score=119.80 Aligned_cols=235 Identities=9% Similarity=0.175 Sum_probs=159.6
Q ss_pred cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec------CCCCCeEEEEE-CCCCCEEEEeeC-CCcEEEeec
Q psy16316 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP------GHTKKVNSLCL-SPIDDTFISGSY-DKTVRLWDL 136 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~------~H~~~V~~~~~-~~~~~~l~s~s~-D~~i~vWd~ 136 (335)
.+..+++.+++. ++++...++.|.+||.. ++.+..+. +|...+.++++ .++++++++... ++.|++||
T Consensus 31 ~p~~v~~~~~g~--l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 31 EPSGVAVNAQND--IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp CEEEEEECTTCC--EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred CCceEEECCCCC--EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 455667766543 45555568899999987 55555553 35567899999 567777777644 89999999
Q ss_pred CCCCceeEEEec--CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe
Q psy16316 137 RSPNCQGIMHVS--GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 137 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
.+++....+... .....++++++++++++...++.|.+||... .....+.. ........+++++|+++++++..
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGC-SKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEEC-TTTCSSEEEEEECSSSEEEEEEG
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCC-CCccCCcEEEEECCCCCEEEEEC
Confidence 455544333221 1234578899999888888889999999642 12222211 11223457899999999777777
Q ss_pred CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-cEEEEECCCCeeEEEeCC-CCCCCeEEEEeC
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-RIHIWNAEKGFKVCVLDA-DHPSPVQTIQFN 292 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-~v~iwd~~~~~~~~~~~~-~h~~~v~~v~~s 292 (335)
.++.|++||.. ++.+..+... .....+..++++|+|+++++...++ .|++|+.. +..+..+.. .....+..++|+
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEE
T ss_pred CCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEEC
Confidence 78999999974 4555555321 1224578899999999999988886 99999964 544444432 122347799999
Q ss_pred CCCcEEEee-eceeEEecc
Q psy16316 293 PKFNMMASA-CTNLAFWIP 310 (335)
Q Consensus 293 p~~~~~~s~-~~~~~~w~~ 310 (335)
|+|.++++. ++.+++|.+
T Consensus 260 ~~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 260 DDGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp TTTEEEEEETTTEEEEEEC
T ss_pred CCCcEEEECCCCeEEEEEc
Confidence 999887775 356888864
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-14 Score=120.64 Aligned_cols=233 Identities=11% Similarity=0.080 Sum_probs=157.6
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 141 (335)
.......++|.++++.. +.++..++.|..|+..++ .+.+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l-~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAV-IFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEE-EEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEE-EEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 33345667887766533 334445789999999887 666777788899999999999888887789999999987775
Q ss_pred eeEEEec-----CCcceEEECCCCCEEEEEEc-----------------CCeEEEEEccCCCCCceeeEEeccCCCccce
Q psy16316 142 QGIMHVS-----GSRPIAAFDPEGLIFGVGVN-----------------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199 (335)
Q Consensus 142 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (335)
....... .....++++|+|+++++... .+.|..++.. +..... ........
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~---~~~~~~~~ 175 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSAP---IRDRVKPN 175 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEEE---ECCCSSEE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----CCEEEe---ecCCCCCc
Confidence 4433211 11234788999999887321 2345444432 112211 12223347
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECC-CCee---eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 200 GIKFSADGKYILISTNGSIIRTFDAY-NGQC---LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~~~~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
+++|+|+++.+++.+.++.|++|++. +++. .+.+ . .....+..++++|+|+++++. ++.|.+||.. +...
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence 89999999999767778899999986 4543 2233 1 133456679999999977776 7889999986 6655
Q ss_pred EEeCCCCCCCeEEEEe-CCCCcEEEeeeceeEEeccccc
Q psy16316 276 CVLDADHPSPVQTIQF-NPKFNMMASACTNLAFWIPTYL 313 (335)
Q Consensus 276 ~~~~~~h~~~v~~v~~-sp~~~~~~s~~~~~~~w~~~~~ 313 (335)
..+.. +.. +.+++| +|++..|..++.+ .+|.++..
T Consensus 250 ~~~~~-~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 250 GRVLT-PQT-TSNLCFGGPEGRTLYMTVST-EFWSIETN 285 (296)
T ss_dssp EEEEC-SSC-CCEEEEESTTSCEEEEEETT-EEEEEECS
T ss_pred EEEEC-CCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcc
Confidence 55543 444 889999 6898876666543 45544443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-14 Score=139.08 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=164.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCC-----eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--------
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDD-----QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-------- 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (335)
+|+..+..++|||||++||.++.++ +|++||+++++....... ...+..++|++++...++.+...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4556789999999999998766543 899999999987653222 22366789999887665554321
Q ss_pred ------CCeEEEEEcCCCce--Eeeec--CCCCCeEEEEECCCCCEEEEeeC-----CCcEEEeecCC------CC-cee
Q psy16316 86 ------DDTVRYLSLHDNKY--IRYFP--GHTKKVNSLCLSPIDDTFISGSY-----DKTVRLWDLRS------PN-CQG 143 (335)
Q Consensus 86 ------d~~i~~~~~~~~~~--~~~~~--~H~~~V~~~~~~~~~~~l~s~s~-----D~~i~vWd~~~------~~-~~~ 143 (335)
...|.+|++.+++. ...+. .|...+.++.|+|+|++|+.++. +..|.+||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 12399999987652 22333 35666889999999998887765 67899999976 42 222
Q ss_pred EEEecCCcceEEECCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe-
Q psy16316 144 IMHVSGSRPIAAFDPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI- 218 (335)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~- 218 (335)
.+..........++++|..++..+.. ..|.+||+..........+.. ......+..+++++++.++++...++.
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 22221111223577888877666543 369999987532111222211 111124567888877777777777774
Q ss_pred -EEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE-e---CCCcEEEEECCCCe
Q psy16316 219 -IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG-S---TDGRIHIWNAEKGF 273 (335)
Q Consensus 219 -i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg-s---~dg~v~iwd~~~~~ 273 (335)
|++|++.+++..+.+..+ ...+..++++|+++.++.. + ..++|++||+.++.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787777766666543 3456678899998765532 2 35789999998765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=141.82 Aligned_cols=278 Identities=12% Similarity=0.067 Sum_probs=169.5
Q ss_pred eeeeccCCcc-----EEEEEECCCCCEEEEecCC---------CeEEEEEccCCcceeeeecccccceEEEEecCCCeeE
Q psy16316 14 AKLFRENTDK-----ITSIDYSADGLLLISCSED---------DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79 (335)
Q Consensus 14 ~~~~~~h~~~-----V~~v~~s~~g~~lasgs~D---------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
.+.+.+|+.. ...+.|||||++|+.++.+ +.+.+||+++++.. .+..+...+...+|+|++....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la 127 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLA 127 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEE
T ss_pred EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEE
Confidence 4556777643 2347889999999999987 55679999998754 3445556788999999988765
Q ss_pred EeecCCCCeEEEEEcCCCceEee-ecCCCCCe-----------------EEEEECCCCCEEEEeeCCC------------
Q psy16316 80 HASTKIDDTVRYLSLHDNKYIRY-FPGHTKKV-----------------NSLCLSPIDDTFISGSYDK------------ 129 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~~~~-~~~H~~~V-----------------~~~~~~~~~~~l~s~s~D~------------ 129 (335)
+. .|+.|.+|++.+++..+. ..++...+ .++.|+|||+.|+.++.|.
T Consensus 128 ~~---~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 128 YV---WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp EE---ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred EE---ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 54 378999999988876553 23443333 3589999999999887543
Q ss_pred ------------------------cEEEeecCC---CCceeEEEec---------CCcceEEECCCCCEEEEEEcC----
Q psy16316 130 ------------------------TVRLWDLRS---PNCQGIMHVS---------GSRPIAAFDPEGLIFGVGVNS---- 169 (335)
Q Consensus 130 ------------------------~i~vWd~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d---- 169 (335)
+|++||+.+ +.+....... .....+.|+|+|++++.....
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 477888877 6321111111 113346799999866655432
Q ss_pred CeEEEEEccCCC----CCceeeEEeccCCCcc-----ceEEEEccCCCEEE-EEeC-C--CeEEEEECCCCeeeeeeccc
Q psy16316 170 DTIKLYDVRSFD----KGPFSNFKFAAEKECD-----WTGIKFSADGKYIL-ISTN-G--SIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 170 ~~v~iwd~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~l~-~~~~-~--~~i~i~d~~~~~~~~~~~~~ 236 (335)
..|.+||+.+.. ......+.. ..+... ....+|+|||+.++ ..+. + ..|++||+.+++.. .+..
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~- 361 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIE-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK- 361 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEE-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC-
T ss_pred EEEEEEECCCCccccceeEEEEeee-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc-
Confidence 379999987643 000111100 011111 23578999999877 5543 3 46899998876543 3322
Q ss_pred ccCCCCceEEEEcCCCcE-EEEEeC----CCcEEEE--ECCCCeeEEEeCC---CCCCCeEEEEeCCCCcEEEee
Q psy16316 237 LNNKGCPLEASFTPDSKY-VISGST----DGRIHIW--NAEKGFKVCVLDA---DHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~-l~tgs~----dg~v~iw--d~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~~s~ 301 (335)
....+..+ +.+|++. +++++. .+...|| ++..+.....+.. .........+|+|++.+++..
T Consensus 362 --g~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~ 433 (740)
T 4a5s_A 362 --GTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLR 433 (740)
T ss_dssp --SSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEE
T ss_pred --CCEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEE
Confidence 11223333 2244554 444444 2344555 4443332223321 123568899999999876644
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-14 Score=118.82 Aligned_cols=239 Identities=10% Similarity=0.064 Sum_probs=161.8
Q ss_pred cEEEEEECCCCCEEE-EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 23 KITSIDYSADGLLLI-SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 23 ~V~~v~~s~~g~~la-sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
...++.++++|++++ +.+.++.|.+||..+.............+..+++.+++. +.++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999999888 657889999999765543221122224566778877654 344444 7899999987665433
Q ss_pred eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
........+..+++.++++++++...++.|.+||..+.......... .....++++++++++++...++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 22233467899999999998888888899999986654332211111 12345788999998888777889999997642
Q ss_pred CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
. .. ...........+++++++|..+++...++.|..|+.......... ......+..++++|+|+++++...
T Consensus 182 ~---~~--~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 182 N---QV--VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP---FTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp C---EE--ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC---CCSCSCEEEEEECTTCCEEEEEGG
T ss_pred c---eE--eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec---cCCCCCceeEEECCCCCEEEEECC
Confidence 1 11 111111134578999999977777767888999998765432211 112245788999999999999999
Q ss_pred CCcEEEEECCCC
Q psy16316 261 DGRIHIWNAEKG 272 (335)
Q Consensus 261 dg~v~iwd~~~~ 272 (335)
+++|++++....
T Consensus 254 ~~~v~~~~~~~~ 265 (270)
T 1rwi_B 254 NDRVVKLTSLEH 265 (270)
T ss_dssp GTEEEEECCCGG
T ss_pred CCEEEEEcCCCc
Confidence 999999998643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=140.22 Aligned_cols=248 Identities=12% Similarity=0.037 Sum_probs=159.4
Q ss_pred cCCccEEEEEECCCCCEEE-----EecCCCeEEEEEccCCcce-eeeecccccceEEEEecCCCeeEEeecCCCC-----
Q psy16316 19 ENTDKITSIDYSADGLLLI-----SCSEDDQIVIYDCELGTNK-RTVFSKKYGVDLIRFTHAKQAAIHASTKIDD----- 87 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~la-----sgs~Dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----- 87 (335)
+|+..+..++|||||++|| +|+.+.+|++||+++++.. .... .......++|++++...+..+ .|.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~--~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEW--LPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEE--CCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEE--ecCCCCCc
Confidence 5677899999999999999 7777889999999998764 2111 111126788999887655444 233
Q ss_pred --------eEEEEEcCCCc----eEeeecCCCCCeEEEEECCCCCEEEEeeCCC----cEEEeecCCCCceeEEEecCCc
Q psy16316 88 --------TVRYLSLHDNK----YIRYFPGHTKKVNSLCLSPIDDTFISGSYDK----TVRLWDLRSPNCQGIMHVSGSR 151 (335)
Q Consensus 88 --------~i~~~~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~----~i~vWd~~~~~~~~~~~~~~~~ 151 (335)
.|++|++.++. .+....+|...+.++.|+|+|++|+.++.++ .|.+||..++....+.......
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 274 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence 39999998775 3333445667889999999999988887776 6777776555444333322222
Q ss_pred ceEEECCCCCEEEEEE---cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC-CC
Q psy16316 152 PIAAFDPEGLIFGVGV---NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY-NG 227 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~-~~ 227 (335)
....+ +++.+++... .++.|.+||+.+........+.. ......+..++++ ++.++++...++..++|... ++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 22233 5555444433 25789999986532111122211 1113345667887 66777788888887777554 35
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEE----EEeCCCcEEEEECCCCee
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVI----SGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~----tgs~dg~v~iwd~~~~~~ 274 (335)
+..+.+..+ ....+..++++|+++.++ +....++|++||+.++..
T Consensus 352 ~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 352 KPVRTVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CEEEECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CeeEEecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 545544321 133455678899998766 333457899999987764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-13 Score=121.12 Aligned_cols=245 Identities=10% Similarity=0.066 Sum_probs=168.7
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
.....+.+. ++++.++...+++|.+||.++++.+..+. .......+++++++ .++.+...++.|.++|+.+++...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT--EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC--eEEEEECCCCeEEEEECCCCeEEE
Confidence 346677774 45566677778999999999998877774 23456677776664 344554468999999999998877
Q ss_pred eecCCC-----CCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC------
Q psy16316 102 YFPGHT-----KKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS------ 169 (335)
Q Consensus 102 ~~~~H~-----~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------ 169 (335)
.++... .....+++ ..+..+++.. .+++|.++|+.+++....+........+.++|+|++++++..+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcc
Confidence 665332 14556777 4444445543 4899999999988776665554444567889999988777654
Q ss_pred ----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 170 ----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 170 ----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
+.|.++|..+.. ....+.... ......++++|+++.+.++.. .|.+||..+++...... .......+..
T Consensus 199 ~~~~~~v~~id~~t~~--v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~g 271 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFT--VEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYG 271 (328)
T ss_dssp CBCCCEEEEEETTTTE--EEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEE
T ss_pred ccCCceEEEEECCCCe--EEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEE
Confidence 789999987532 111221111 123578999999999988765 89999998876532111 0111345788
Q ss_pred EEEcC-CCcEEEEE----eCCCcEEEEECCCCeeEEEeC
Q psy16316 246 ASFTP-DSKYVISG----STDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 246 ~~~sp-~~~~l~tg----s~dg~v~iwd~~~~~~~~~~~ 279 (335)
++++| ++.++++. ..+++|.+||.. +..+..+.
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 99999 66677777 678999999987 76665553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=135.19 Aligned_cols=240 Identities=13% Similarity=0.060 Sum_probs=148.4
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceE---E----------------EEecCCCeeEEee--
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL---I----------------RFTHAKQAAIHAS-- 82 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~-- 82 (335)
...+.|+|||++|+.++.++.|++||+.+++.......+...... + .+++++....+..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 334789999999999999999999999887654433322221111 1 2233322211111
Q ss_pred -cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCC------CcEEEeecCCCCceeEEEec--CCcc
Q psy16316 83 -TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYD------KTVRLWDLRSPNCQGIMHVS--GSRP 152 (335)
Q Consensus 83 -~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~--~~~~ 152 (335)
...+..+.+||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+||+..+......... ....
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 134668899999888765554 4677899999999 78777666543 46888888765433222211 1123
Q ss_pred eEEECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEe------------
Q psy16316 153 IAAFDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILIST------------ 214 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~------------ 214 (335)
...|+|+|+.++..+.+ +.|.+||+.+.. ...+.... ... +.|+| +|++++.+.
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECC----SEE-EEEECSSSSEEEEEECCC---------
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 46899999876665443 459999987532 12221111 122 78999 999888754
Q ss_pred ----CCCeEEEEECCCCeeeeeecccccCC--------CCceEEEEcCCCcEEEEEeC-CCcEEEE--ECCCCe
Q psy16316 215 ----NGSIIRTFDAYNGQCLQTLAGFLNNK--------GCPLEASFTPDSKYVISGST-DGRIHIW--NAEKGF 273 (335)
Q Consensus 215 ----~~~~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~tgs~-dg~v~iw--d~~~~~ 273 (335)
.+..|++||+.+++. +.+..+.... ..+..++|+|||+.|+..+. ++...+| ++..+.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp -CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred cccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 346899999988764 3343322100 01345789999998877765 4555555 554443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-14 Score=136.87 Aligned_cols=286 Identities=11% Similarity=0.032 Sum_probs=170.7
Q ss_pred eeeccCCccEE---------EEEEC--CCCCE-EEEecC-CCeEEEEEcc--CCcceeeeec-----ccccceEEEEecC
Q psy16316 15 KLFRENTDKIT---------SIDYS--ADGLL-LISCSE-DDQIVIYDCE--LGTNKRTVFS-----KKYGVDLIRFTHA 74 (335)
Q Consensus 15 ~~~~~h~~~V~---------~v~~s--~~g~~-lasgs~-Dg~i~lwd~~--~~~~~~~~~~-----~~~~~~~~~~~~~ 74 (335)
+.+..|...|. ...|+ |||++ |+.++. +..|.+|++. .......+.. +...+..++|+++
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence 45556665555 55554 99998 776554 5666666665 2033344444 4456788999999
Q ss_pred CCeeEEeecC--------CCCeEEEEEcCC------CceEeeec-CCCCCeEEEEECCCCCEEEEeeCCC--------cE
Q psy16316 75 KQAAIHASTK--------IDDTVRYLSLHD------NKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDK--------TV 131 (335)
Q Consensus 75 ~~~~~~~~~~--------~d~~i~~~~~~~------~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~--------~i 131 (335)
+...+..+.. ....|.+||+.+ ++.. .+. .+...+.+++|+|+|+.|+.++.|+ .|
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 8765554421 115789999988 5544 444 5667888999999999999888664 79
Q ss_pred EEeecC-CC---CceeEEEe-cCCcceEEECCCCCEEEEEEcCC--eEEEEEccCCCCCceeeEEeccCCC------ccc
Q psy16316 132 RLWDLR-SP---NCQGIMHV-SGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE------CDW 198 (335)
Q Consensus 132 ~vWd~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~------~~~ 198 (335)
.+||+. ++ ....+... ........|+|+|++++++..++ .|.+||+... ....+....... ..+
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTC
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccC
Confidence 999998 45 33333222 34445678999999888887788 4555554331 111111100000 013
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEE--ECCCCeeeeeecccccCCCCceEE-EEcCCCcEEEEEeCCC--cEEEEECCCCe
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTF--DAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDG--RIHIWNAEKGF 273 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~tgs~dg--~v~iwd~~~~~ 273 (335)
..++|+|++.+++++.. +.+++| |+.+++ .+.+..+ ...+..+ +++++.-++++++.+. .|++||..++.
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 46889999999999988 888888 665555 4555443 2233344 4443333455556554 45556766665
Q ss_pred eEEEeCCCCCCCeEEEEeCCCCcEEEee-e-ceeEEecc
Q psy16316 274 KVCVLDADHPSPVQTIQFNPKFNMMASA-C-TNLAFWIP 310 (335)
Q Consensus 274 ~~~~~~~~h~~~v~~v~~sp~~~~~~s~-~-~~~~~w~~ 310 (335)
..... ..|...+....+.+...+...+ + ..+..|..
T Consensus 372 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 372 ARTIG-ARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEE-SCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred eEEee-cCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 44333 3344444444555544444443 2 34555544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-12 Score=107.43 Aligned_cols=276 Identities=10% Similarity=0.045 Sum_probs=184.0
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
.....+.++.++++|.+.++...++.|.+||.. ++...... .....+..+++.+++ .+..+...++.+..+|.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG--DIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC--CEEEEecCCCeEEEECCC-C
Confidence 455678999999999988888889999999987 54332111 112345566665443 344444456789999987 5
Q ss_pred ceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 98 KYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 98 ~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
+... .+......+.++++.++++++++...++.|..+|.. ++....... ......++++++++++++...++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 5432 233344678999999999988888778899999987 444322111 122345678899998877766788999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
+|.. . ....+.. ........++++++++...++...++.|..|+. +++... +.. ......+..++++|+|++
T Consensus 172 ~~~~-g---~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 172 ITNT-G---KLEEYPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNSEI 243 (300)
T ss_dssp ECTT-C---CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCE
T ss_pred ECCC-C---cEEEeeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCCCE
Confidence 9873 1 1222221 122234578999999987777666778999998 444332 211 112345788999999998
Q ss_pred EEEEeCCCcEEEEECCCCeeEE-EeCCCCCCCeEEEEeCCCCcEEEeeeceeEEeccc
Q psy16316 255 VISGSTDGRIHIWNAEKGFKVC-VLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~~~-~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~ 311 (335)
+++...++.|..|+.. +.... .+. .....+.++++.|+|.+.++.. + .++..+
T Consensus 244 ~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 244 WFTEWGANQIGRITND-NTIQEYQLQ-TENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECC-STTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred EEeccCCCeEEEECCC-CcEEEEECC-ccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 8887778899999984 43322 232 2345678899999998877765 4 555433
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-12 Score=113.49 Aligned_cols=248 Identities=10% Similarity=0.073 Sum_probs=160.9
Q ss_pred eccCCccEEEEEECCCCCEEEE-------ecCCCeEEEEEccCCcceeeee----cccccceEEEEecCCCeeEEeecCC
Q psy16316 17 FRENTDKITSIDYSADGLLLIS-------CSEDDQIVIYDCELGTNKRTVF----SKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~las-------gs~Dg~i~lwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
+...-....++.|+++|.++++ +..++.|.+||..+++...... .....+..+.+.++....+++..
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-- 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-- 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET--
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC--
Confidence 3444556789999999998888 6788999999988776532211 12344666777665223333332
Q ss_pred CCeEEEEEcCCCceEee-ecC----CCCCeEEEEECCCCCEEEEeeCC---------------CcEEEeecCCCCceeEE
Q psy16316 86 DDTVRYLSLHDNKYIRY-FPG----HTKKVNSLCLSPIDDTFISGSYD---------------KTVRLWDLRSPNCQGIM 145 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~-~~~----H~~~V~~~~~~~~~~~l~s~s~D---------------~~i~vWd~~~~~~~~~~ 145 (335)
.+.+.+||.. ++.... ... +...+.++++.+++++.++...+ +.|..||.. ++.....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 3478889988 665443 221 12458899999999888887665 567777765 4443332
Q ss_pred EecCCcceEEEC----CCCCE-EEEEEcCCeEEEEEccCCCC-CceeeEEeccCCC-ccceEEEEccCCCEEEEEeCCCe
Q psy16316 146 HVSGSRPIAAFD----PEGLI-FGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKE-CDWTGIKFSADGKYILISTNGSI 218 (335)
Q Consensus 146 ~~~~~~~~~~~~----~~~~~-~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~~~~ 218 (335)
........++++ ++++. +++...++.|.+||+..... .....+....... ....+++++++|+++++...++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 222233456778 88854 45555678999999762110 0001111111111 33567999999998888778889
Q ss_pred EEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
|..||..+++....+.. +...+.+++|+|+++ ++++...++.|..|+...
T Consensus 249 i~~~d~~~g~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeC---CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987766555532 235678899999999 555666678899999763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-12 Score=110.08 Aligned_cols=216 Identities=8% Similarity=0.008 Sum_probs=159.5
Q ss_pred CCCCEEEEecCCCeEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCC-C
Q psy16316 31 ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT-K 108 (335)
Q Consensus 31 ~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~ 108 (335)
..+++|++++.|+.|.+||.++++.+..+..+. ..+..+.+.++++. +++ .++.+..+|. +++.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i--lvs--~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI--LFS--YSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE--EEE--CBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE--EEe--CCCCEEEECC-CCCEEEEEcCCCCc
Confidence 346799999999999999999999888876654 46777888877653 333 3788999999 788888887653 5
Q ss_pred CeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEEEecCC-------cceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 109 KVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSGS-------RPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
.+.++.+.++|+.+++.+. ++.|..+|. .++....+..... ...+...++|+++++...++.|..||.. .
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 777877875 5555444432211 1234678899999999999999999976 2
Q ss_pred CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc---CCCCceEEEEcCCCcEEEE
Q psy16316 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN---NKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~t 257 (335)
+ ..-.+.. .....++...++++.++++..++.|..+|..+++.+.++..... ....+..+...|+|..+++
T Consensus 156 ~--~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 156 Q--LLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp C--EEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred C--EEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 2 2222221 12234577889999999988888999999999998887753211 1233567788899988888
Q ss_pred Ee
Q psy16316 258 GS 259 (335)
Q Consensus 258 gs 259 (335)
..
T Consensus 230 ~~ 231 (276)
T 3no2_A 230 NW 231 (276)
T ss_dssp EE
T ss_pred ec
Confidence 74
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-13 Score=111.72 Aligned_cols=238 Identities=8% Similarity=0.019 Sum_probs=155.4
Q ss_pred cceEEEEecCCCeeEEe-ecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee
Q psy16316 65 GVDLIRFTHAKQAAIHA-STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 143 (335)
....+++.+++. +.+ +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~--l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGN--VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCC--EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCC--EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 445566666543 444 445678899998766543332233445788999999998777766 8999999987654322
Q ss_pred EEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 144 IMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 144 ~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
..... .....++++++++++++...++.|.+|+...... . . ..........+++++|+++++++...++.|.+|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~--~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T--V-LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--E--E-CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--E--e-eccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 11111 2234578899999888887788999997643211 1 1 111111234679999999977776677899999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
|........... .....+..++++|+|.++++...++.|.+|+........ ....+...+..++++|+|.++++..
T Consensus 177 ~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 177 EAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp CTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred ecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEEC
Confidence 988765433221 122457789999999888888888999999986544332 3333445789999999999877775
Q ss_pred c--eeEEecccccc
Q psy16316 303 T--NLAFWIPTYLS 314 (335)
Q Consensus 303 ~--~~~~w~~~~~~ 314 (335)
+ .|+++.+..++
T Consensus 253 ~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 253 GNDRVVKLTSLEHH 266 (270)
T ss_dssp GGTEEEEECCCGGG
T ss_pred CCCEEEEEcCCCcc
Confidence 4 46666554443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-12 Score=124.87 Aligned_cols=260 Identities=10% Similarity=0.039 Sum_probs=166.7
Q ss_pred CCCCEEEEecCC-Ce--EEEEEc--cCCcceeeeec-------ccccceEEEEecCCCeeEEeecCC---CCeEEEEEcC
Q psy16316 31 ADGLLLISCSED-DQ--IVIYDC--ELGTNKRTVFS-------KKYGVDLIRFTHAKQAAIHASTKI---DDTVRYLSLH 95 (335)
Q Consensus 31 ~~g~~lasgs~D-g~--i~lwd~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~ 95 (335)
|+|++++-...+ +. -.||-. ..++. +.+.. +...+..++|+|++....+.+... ...|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 889877654432 22 145544 33332 22211 223467889999887655544321 1289999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCc----------------EEEeecCCCCceeEE--EecC-C--cceE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT----------------VRLWDLRSPNCQGIM--HVSG-S--RPIA 154 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~----------------i~vWd~~~~~~~~~~--~~~~-~--~~~~ 154 (335)
+++.......+ ..+.+++|+|||+.|+.++.|+. |++|++.++...... .... . ....
T Consensus 160 tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 160 GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238 (710)
T ss_dssp TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence 99877643322 23678999999999999988876 999999887643222 2211 1 2356
Q ss_pred EECCCCCEEEEEEc-----CCeEEEEEccC------CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC----CeE
Q psy16316 155 AFDPEGLIFGVGVN-----SDTIKLYDVRS------FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG----SII 219 (335)
Q Consensus 155 ~~~~~~~~~~~~~~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----~~i 219 (335)
.++|+|++++..+. +..+.+||+.. ... ....+.. ...... -.|+|+|..|+..++. ..|
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~---~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLID---NFEGEY-DYVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEEC---SSSSCE-EEEEEETTEEEEEECTTCTTCEE
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeC---CCCcEE-EEEeccCCEEEEEECCCCCCCEE
Confidence 89999998887764 56899999875 211 1222221 111222 3588999988877653 369
Q ss_pred EEEECCCCe--eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc--EEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 220 RTFDAYNGQ--CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR--IHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 220 ~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~--v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.+||+.+++ ..+.+..+.. ...+..++|++++.++++...|+. |++|+..++.....+.. +.+.+..++++|++
T Consensus 314 ~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~ 391 (710)
T 2xdw_A 314 INIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKD 391 (710)
T ss_dssp EEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTC
T ss_pred EEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCC
Confidence 999998764 2234433221 123556888888889999999985 56677766765555643 57788999999998
Q ss_pred cEEE
Q psy16316 296 NMMA 299 (335)
Q Consensus 296 ~~~~ 299 (335)
..++
T Consensus 392 ~~l~ 395 (710)
T 2xdw_A 392 TEIF 395 (710)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7555
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-13 Score=113.06 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=159.7
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCC-CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceE
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHT-KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIA 154 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~ 154 (335)
.++++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++++ +.++.|..||. +++....+... ......
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 456677789999999999999999888776 5789999999999888 45788999998 77766555443 123346
Q ss_pred EECCCCCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccC---CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 155 AFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAE---KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 155 ~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
.+.++|+++++.+. ++.+..+|.. ......+..... .......+++.++|+++++...++.|..||.. |+.+
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred EECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 78899999998877 6777777652 222223322111 11123457889999999999999999999998 8887
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC-----CCCCeEEEEeCCCCcEEEeee
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-----HPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.++... ..+..+.+.|+++.+++++.+++|..+|..++..+..+... ....+..++.-|+|.++++..
T Consensus 159 w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 776542 34566888999999999999999999999989887766421 112367888899999888773
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-13 Score=115.97 Aligned_cols=225 Identities=11% Similarity=0.094 Sum_probs=147.2
Q ss_pred ccEEEEEECCCCCEEEEecCC---C--eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC------------
Q psy16316 22 DKITSIDYSADGLLLISCSED---D--QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK------------ 84 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~D---g--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 84 (335)
..+..+.|||||++||.++.+ + .|.+||+++++...... ... +..++|++++...++.+..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457889999999999988754 3 37778888776544332 233 8889999988765555421
Q ss_pred -------------CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC-------cEEEeecCCCCceeE
Q psy16316 85 -------------IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK-------TVRLWDLRSPNCQGI 144 (335)
Q Consensus 85 -------------~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-------~i~vWd~~~~~~~~~ 144 (335)
....+.+||+.+++.++.+.. . .+..+.|+|++ ++++++.+. ...+|.+.+++...+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l 213 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM 213 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence 125688899988877455544 3 78899999999 888886652 345555444433333
Q ss_pred EEecCCcceEEECCCCCEEEEEEcC--------CeEEEEEccCCCCCceeeEEeccCCCccceE-EEEccCCCEEEEEeC
Q psy16316 145 MHVSGSRPIAAFDPEGLIFGVGVNS--------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTG-IKFSADGKYILISTN 215 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~ 215 (335)
... .....++|+|+.++.++.+ ..|.+|| .. ... .........+.. +.|+ ++ ++++++.
T Consensus 214 ~~~---~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~--~l~~~~~~~~~~~~~~s-dg-~~~~~~~ 281 (347)
T 2gop_A 214 FEK---VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVM--GILDEVDRGVGQAKIKD-GK-VYFTLFE 281 (347)
T ss_dssp EEE---ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEE--ESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred ccC---cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceE--eccccCCcccCCccEEc-Cc-EEEEEec
Confidence 222 2333448999888776644 3677777 21 111 122222344554 8899 88 8888888
Q ss_pred CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcE-EEEECC
Q psy16316 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI-HIWNAE 270 (335)
Q Consensus 216 ~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v-~iwd~~ 270 (335)
++.+++| +.+++... +.. ....+..++|+| .++++++.++.. ++|...
T Consensus 282 ~~~~~l~-~~~g~~~~-~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 282 EGSVNLY-IWDGEIKP-IAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TTEEEEE-EESSSEEE-EEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCcEEEE-EcCCceEE-Eec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999 77655433 322 234567889999 677787777765 777765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-11 Score=113.33 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=184.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEe----cCCCeeEEeecC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFT----HAKQAAIHASTK 84 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 84 (335)
.++...+... ..+..+.|+|||++|++++.|+.|.+||+. +.+....+... .....++++ +++...+ .+.-
T Consensus 187 ~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~-v~n~ 263 (567)
T 1qks_A 187 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAI-AGAY 263 (567)
T ss_dssp CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEE-EEEE
T ss_pred CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEE-EEEc
Confidence 3444455433 346789999999999999999999999995 67666665442 235677888 4555444 4445
Q ss_pred CCCeEEEEEcCCCceEeeecC----------CCC-CeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEe--cCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPG----------HTK-KVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHV--SGS 150 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~----------H~~-~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~ 150 (335)
.++.+.++|..+.+.++.+.- |.. .+..+..++++. .+++...+|.|.++|........+... ...
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~ 343 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 343 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence 679999999999988877642 222 677888888765 566667789999999876543332222 222
Q ss_pred cceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEE-EccCCCEEEE-Ee-CCCeEEEEECCC
Q psy16316 151 RPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK-FSADGKYILI-ST-NGSIIRTFDAYN 226 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~~-~~-~~~~i~i~d~~~ 226 (335)
.....|+|+++++.++. .++.|.++|+.+.. .............+-.+.. ++|++..+.+ +. .++.|.++|..+
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 23467999999876655 57899999997632 1111111011111112333 5887555544 43 458999999987
Q ss_pred -------CeeeeeecccccCCCCceEEEEcCCCcEEEEEeC-------CCcEEEEECCCC-----eeE-EEeCC------
Q psy16316 227 -------GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST-------DGRIHIWNAEKG-----FKV-CVLDA------ 280 (335)
Q Consensus 227 -------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-------dg~v~iwd~~~~-----~~~-~~~~~------ 280 (335)
.+.++++.... .....+.++|++++|.+... ...|.++|..+. .+. ..++.
T Consensus 422 ~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 422 EGHPDNAWKILDSFPALG---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TTCTTTBTSEEEEEECSC---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCccccCEEEEEEecCC---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 55666665421 12244789999998887663 358999998765 221 23321
Q ss_pred -CCCCCeEEEEeCCCCcEEEee
Q psy16316 281 -DHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 281 -~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.-...+..+.|+|+|..+..+
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEE
T ss_pred CCCCcceEeeeECCCCCEEEEE
Confidence 123578899999999765543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-13 Score=128.88 Aligned_cols=247 Identities=12% Similarity=0.071 Sum_probs=153.9
Q ss_pred cCCccEEEEEECCCCCEEEEecCC-----CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--------
Q psy16316 19 ENTDKITSIDYSADGLLLISCSED-----DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-------- 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~D-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (335)
+|+..+..++|||||++||.++.+ .+|++||+++++..... .....+..++|+++ ...++.+...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455578899999999999887654 46999999998765431 12222356789988 6554443211
Q ss_pred ----CCeEEEEEcCCCce--Eeee--cCCCCCeEEEEECCCCCEEEEeeCCC-----cEEEeecCCC--C-ceeEEEecC
Q psy16316 86 ----DDTVRYLSLHDNKY--IRYF--PGHTKKVNSLCLSPIDDTFISGSYDK-----TVRLWDLRSP--N-CQGIMHVSG 149 (335)
Q Consensus 86 ----d~~i~~~~~~~~~~--~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~-----~i~vWd~~~~--~-~~~~~~~~~ 149 (335)
...|.+|++.++.. ...+ ..|...+.++.|+|+|++|+..+.++ .|.+||+.++ . ...+.....
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 23488999877652 2333 33444688999999999888877554 8999999876 4 332222221
Q ss_pred CcceEEECCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 150 SRPIAAFDPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.. ...+.|++..++..+.+ ..|.+||+.... .....+ ..+....+..++++ ++.++++...++..++|...
T Consensus 318 ~~-~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l--~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 AQ-WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTV--VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SC-EEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEE--ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ce-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEE--ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 11 22244788887777653 458999986531 112222 12223334566776 55566777778876666543
Q ss_pred -CCeeeeeecccccCCCCceEEEEcCCCcEEE----EEeCCCcEEEEECCCCee
Q psy16316 226 -NGQCLQTLAGFLNNKGCPLEASFTPDSKYVI----SGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 226 -~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~----tgs~dg~v~iwd~~~~~~ 274 (335)
+++..+.+.. .....+..++++|+++.|+ +....++|++||+.++..
T Consensus 393 ~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 393 LDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4554555432 1234566788999987655 223457899999988763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-11 Score=107.48 Aligned_cols=255 Identities=11% Similarity=0.002 Sum_probs=166.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeecc-------cccceEEEEec
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFTH 73 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~ 73 (335)
+++...+..-..+ .+.|+|||++|+.+. .+++|.+||..+.+....+... ......+.+++
T Consensus 57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp 134 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP 134 (373)
T ss_pred CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence 3444555543343 899999999888875 3788999999988776665432 12345678888
Q ss_pred CCCeeEEeecCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEe----
Q psy16316 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHV---- 147 (335)
Q Consensus 74 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~---- 147 (335)
++...+++....++.|.++| .+++.+.. +.-- . ++.+.|++ +.+++.+.||++.++|. +++.......
T Consensus 135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 88776665543468899999 99988877 6421 1 24455654 46677888999999999 7665432210
Q ss_pred cCCcce---EEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccCCCEEEEEeC--
Q psy16316 148 SGSRPI---AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSADGKYILISTN-- 215 (335)
Q Consensus 148 ~~~~~~---~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~~-- 215 (335)
.+..++ ..+.+++..++..+..+.+.+.|+..........+..... .......++++|+++.++++..
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 111111 1233443333333356788888886421111111111000 0112234789999998887653
Q ss_pred --------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEECCCCeeEEE
Q psy16316 216 --------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 216 --------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd~~~~~~~~~ 277 (335)
++.|.++|+.+++.++++.. ...+..++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999998888742 12467899999999 777777 589999999999887766
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-11 Score=114.94 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=180.6
Q ss_pred CCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeecCCC
Q psy16316 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFPGHT 107 (335)
Q Consensus 30 s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~H~ 107 (335)
++.+.++++...+++|.++|.++++.+..+... ..+..+.+++++...++++ .|+.|.+||+. +.+.+..++...
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~--~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEc--CCCeEEEEECCCCCCcEeEEEecCC
Confidence 455667888899999999999999887776543 3455788999877655543 58899999996 777777776543
Q ss_pred CCeEEEEEC----CCCCEEEEeeC-CCcEEEeecCCCCceeEEEecC------------CcceEEECCCCCEEEE-EEcC
Q psy16316 108 KKVNSLCLS----PIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSG------------SRPIAAFDPEGLIFGV-GVNS 169 (335)
Q Consensus 108 ~~V~~~~~~----~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~d 169 (335)
....++|+ |+|++++.+++ +++|.++|..+.+....+...+ ....+..++++..+++ ...+
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 35799999 69988777664 6999999998887766554321 1223455666554444 4456
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecc--cccCCCCceEE
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAG--FLNNKGCPLEA 246 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~ 246 (335)
+.|.++|...... .. .... +.......+.|+|++++++++. .++.|.++|+.+++....+.. ...|.+.-..
T Consensus 320 g~v~~vd~~~~~~--~~-v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~- 394 (567)
T 1qks_A 320 GKILLVDYTDLNN--LK-TTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN- 394 (567)
T ss_dssp TEEEEEETTCSSE--EE-EEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred CeEEEEecCCCcc--ce-eeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence 8999999865321 11 1111 1112235688999999988766 467899999999987766542 1122221122
Q ss_pred EEcCC-CcEEEEEe-CCCcEEEEECCC-------CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---------ceeEEe
Q psy16316 247 SFTPD-SKYVISGS-TDGRIHIWNAEK-------GFKVCVLDADHPSPVQTIQFNPKFNMMASAC---------TNLAFW 308 (335)
Q Consensus 247 ~~sp~-~~~l~tgs-~dg~v~iwd~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---------~~~~~w 308 (335)
-++|+ +..++++. .++.|.++|..+ ...+..++.. ...-..+..||+++.+.... ..+.++
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 26887 45556664 468999999876 4555666532 22223577899998665432 256777
Q ss_pred ccc
Q psy16316 309 IPT 311 (335)
Q Consensus 309 ~~~ 311 (335)
...
T Consensus 474 d~~ 476 (567)
T 1qks_A 474 DIK 476 (567)
T ss_dssp EGG
T ss_pred ECC
Confidence 553
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=111.36 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=162.1
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
.....++|+++|.++++...++.|++||.+++........ ..... +++.++....+.+.......+.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4688999999999888888899999999987765543333 22233 778877665444433222378888887665444
Q ss_pred ee----cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---Ee--cCCc--ceEEECC-CCCEEEEEEcC
Q psy16316 102 YF----PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HV--SGSR--PIAAFDP-EGLIFGVGVNS 169 (335)
Q Consensus 102 ~~----~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~--~~~~--~~~~~~~-~~~~~~~~~~d 169 (335)
.+ ..+...+.+++++|++..|..+..++.|+.||..++...... .. .... .-++++| ++.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 224567889999995444555677899999999876533221 11 1112 2678899 57777777788
Q ss_pred CeEEEEEccCCCCCceeeEEecc------------CCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeeccc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAA------------EKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
+.|..|+.... ...+.-.. ..-....+++++|+|++.++-. .++.|+.|++.+++. .++.+.
T Consensus 289 ~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ 363 (409)
T ss_dssp TEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred CEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence 89999987531 11111100 0012246899999999777766 788999999877764 344332
Q ss_pred cc------------CCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 237 LN------------NKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 237 ~~------------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
.. .-..+..++++|++.++++-..+++|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 1235788999999989999888899988865
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-11 Score=109.66 Aligned_cols=271 Identities=13% Similarity=0.117 Sum_probs=178.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeeccc-------ccceEEEEe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSKK-------YGVDLIRFT 72 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~~-------~~~~~~~~~ 72 (335)
.+++...+..-..+ . +.++|||++|..++ .++.|.+||..+.+....+.... .....+.++
T Consensus 68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 45555666544444 4 99999999887765 36789999999998887765321 245678899
Q ss_pred cCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCC-CCceeEEE-ecC
Q psy16316 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRS-PNCQGIMH-VSG 149 (335)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~-~~~~~~~~-~~~ 149 (335)
+++...+++....++.|.++|+.+++.+.++.-- .. ..+.|. .+.+++.+.||++-+.++.+ ++...... .-.
T Consensus 146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~ 221 (386)
T 3sjl_D 146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 221 (386)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence 9887766654445789999999999998887531 11 122343 45777888999999999876 44422110 000
Q ss_pred --Ccce---EEE-CCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec-------cCCCccceEEEEccCCCEEEEEeC-
Q psy16316 150 --SRPI---AAF-DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-------AEKECDWTGIKFSADGKYILISTN- 215 (335)
Q Consensus 150 --~~~~---~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~- 215 (335)
..++ ..| .++|+++. .+.++++.+.|+.............. .-....+..++++|+++.+++...
T Consensus 222 ~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 0111 133 46776544 45578999999865321111111100 000112234788999999888753
Q ss_pred ---------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEE-EeCCCcEEEEECCCCeeEEEeCC-CCC
Q psy16316 216 ---------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVIS-GSTDGRIHIWNAEKGFKVCVLDA-DHP 283 (335)
Q Consensus 216 ---------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~t-gs~dg~v~iwd~~~~~~~~~~~~-~h~ 283 (335)
+..|.++|+.+++.++++..- ..+..++|+||++ +|++ ...++.|.++|..+++.+..++. +|+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 357999999999998887532 1355799999996 5555 45689999999999988877753 344
Q ss_pred CCeEEEEeCCC
Q psy16316 284 SPVQTIQFNPK 294 (335)
Q Consensus 284 ~~v~~v~~sp~ 294 (335)
+++.+++|
T Consensus 377 ---~~l~~s~d 384 (386)
T 3sjl_D 377 ---PQVITTAD 384 (386)
T ss_dssp ---CCEEEECC
T ss_pred ---ceeEECCc
Confidence 45566665
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=124.06 Aligned_cols=257 Identities=8% Similarity=0.037 Sum_probs=161.0
Q ss_pred CCCCCEEEEecCCC---eEEEEEcc--CCcceeeeec-------ccccceEEEEecCCCeeEEe---ecCCCCeEEEEEc
Q psy16316 30 SADGLLLISCSEDD---QIVIYDCE--LGTNKRTVFS-------KKYGVDLIRFTHAKQAAIHA---STKIDDTVRYLSL 94 (335)
Q Consensus 30 s~~g~~lasgs~Dg---~i~lwd~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~d~~i~~~~~ 94 (335)
+|+|.+++-...++ .-.||-.. .++ .+.+.. +...+..++|+|++....+. +++.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 38899887666544 34556543 333 233322 22357888999988765544 3334579999999
Q ss_pred CCCceEeeecCCCCCe--EEEEECCCCCEEEEeeCCCc-------------EEEeecCCCCcee--EEEec---CCcceE
Q psy16316 95 HDNKYIRYFPGHTKKV--NSLCLSPIDDTFISGSYDKT-------------VRLWDLRSPNCQG--IMHVS---GSRPIA 154 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V--~~~~~~~~~~~l~s~s~D~~-------------i~vWd~~~~~~~~--~~~~~---~~~~~~ 154 (335)
.+++.+. ..+...+ .+++|+|+|+.|+.++.|.. |++|++.++.... +.... ......
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 9987651 1222233 68999999999999999877 9999998876432 22221 123356
Q ss_pred EECCCCCEEEEEEcCC----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC----CCeEEEEECCC
Q psy16316 155 AFDPEGLIFGVGVNSD----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN----GSIIRTFDAYN 226 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----~~~i~i~d~~~ 226 (335)
.++|+|++++..+.++ .+.++|... .....+.... .......+ ++|. ++..++ ++.|.+||+.+
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~---~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGE---KDFRLLVKGV---GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTC---SSCEEEEECS---SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCC---CceEEeecCC---CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence 7999999887776555 555554432 2222222211 12233344 6777 555544 57899999987
Q ss_pred Cee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC-CCeeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 227 GQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 227 ~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
++. .+.+..+. ....+..++|+ ++.++++...|+..+||... ++.....+...+.+.|..++++|++..++
T Consensus 305 ~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 305 PARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp CSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred CCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 653 13332221 12235567787 77889999999998888654 35444445433366788899999987665
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-10 Score=104.09 Aligned_cols=278 Identities=11% Similarity=-0.044 Sum_probs=172.7
Q ss_pred EECCCCCEEEEecC--CC---eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEc
Q psy16316 28 DYSADGLLLISCSE--DD---QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSL 94 (335)
Q Consensus 28 ~~s~~g~~lasgs~--Dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~ 94 (335)
...|++.++..+.. .. +|.++|..+++....+..... . .+.+++++...+++.. ..++.|.++|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44588887766653 33 889999999987766654332 2 8899998887766642 24678999999
Q ss_pred CCCceEeeecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeE-EEecCCcceEEECCC-CCEE
Q psy16316 95 HDNKYIRYFPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGI-MHVSGSRPIAAFDPE-GLIF 163 (335)
Q Consensus 95 ~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 163 (335)
.+.+.+..+.-- ...-..+.++|+|++|+.++. +++|.++| .+++.... +...+. ..+.|+ ...+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 988877765421 123458899999999988874 58899999 88876654 433221 233343 3456
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEE---eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeeccccc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFK---FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ--CLQTLAGFLN 238 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~ 238 (335)
++.+.|+.+.++|. .... ..... ...+..-......+.+++..++..+.++.+.+.|+.+.. ....+.....
T Consensus 181 ~~~~~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~ 257 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG 257 (373)
T ss_pred EEEcCCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence 66677888999988 4321 11110 001111011224566666655555567889999987552 2222210000
Q ss_pred -------CCCCceEEEEcCCCcEEEEEeC----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEe
Q psy16316 239 -------NKGCPLEASFTPDSKYVISGST----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMAS 300 (335)
Q Consensus 239 -------~~~~v~~~~~sp~~~~l~tgs~----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s 300 (335)
.......++++|+++.+..... ++.|.++|..+++.+..++.+ .....++|+|+|+ .+.+
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYA 335 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEE
Confidence 0111223789999887666543 357999999998887777543 3568999999998 5555
Q ss_pred ee-ceeEEecccccccc
Q psy16316 301 AC-TNLAFWIPTYLSNH 316 (335)
Q Consensus 301 ~~-~~~~~w~~~~~~~~ 316 (335)
+. .+-.++..+...++
T Consensus 336 ~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 336 LSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EcCCCCeEEEEECCCCC
Confidence 53 23334433444444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=115.92 Aligned_cols=269 Identities=13% Similarity=0.066 Sum_probs=165.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec--CCCeEEEEEccCCcceeeee-------cccccceEEEEecCCCeeEE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS--EDDQIVIYDCELGTNKRTVF-------SKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs--~Dg~i~lwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 80 (335)
.+++...+. ..+..++++|+|+++++.. .++.++||.+..++. ..+. .+...+..+++.+++. .++
T Consensus 8 ~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v 82 (343)
T 2qe8_A 8 RLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWM 82 (343)
T ss_dssp CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEE
T ss_pred eeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEE
Confidence 455555544 7799999999999999864 234467777664432 2111 1223466777776643 333
Q ss_pred eecCC----CCeEEEEEcCCCceEeeecC------CCCCeEEEEECCCC-CEEEEee---CCCcEEEeecCCCCceeEEE
Q psy16316 81 ASTKI----DDTVRYLSLHDNKYIRYFPG------HTKKVNSLCLSPID-DTFISGS---YDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 81 ~~~~~----d~~i~~~~~~~~~~~~~~~~------H~~~V~~~~~~~~~-~~l~s~s---~D~~i~vWd~~~~~~~~~~~ 146 (335)
+..+. +..|.+||+.+++.++.+.. +...++.+++.+++ ..+++-+ .++.|.+||+.+++......
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 33221 57899999999887766643 22456899999764 4557766 78999999998776544321
Q ss_pred ec-CCcc-eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-eEEEEE
Q psy16316 147 VS-GSRP-IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFD 223 (335)
Q Consensus 147 ~~-~~~~-~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-~i~i~d 223 (335)
.. ...+ ...+.++|..+.+...+++++.|.. ..++++++|+++.|+.+...+ .+..++
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceec-------------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 10 0000 0122334544444455555544321 236799999999888776554 566665
Q ss_pred CC---CCe-----eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 224 AY---NGQ-----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 224 ~~---~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.. .+. ....+. .......+..++++++|.++++...++.|.+||..++.........+.....+++|.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred HHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 32 111 000000 001123456799999999999999999999999855654333322234567899999999
Q ss_pred cEEEeeec
Q psy16316 296 NMMASACT 303 (335)
Q Consensus 296 ~~~~s~~~ 303 (335)
.++++...
T Consensus 303 ~l~v~~~~ 310 (343)
T 2qe8_A 303 YLYFDCNQ 310 (343)
T ss_dssp CEEEEECC
T ss_pred cEEEEeCc
Confidence 88777653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-10 Score=98.65 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=151.3
Q ss_pred eeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
..+..+..---+..|+|+ +.++++...++.|..||.+++... . ......+..+++.+++. .+++. ++.+.+||
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-~~~~~~~~~i~~~~dG~-l~v~~---~~~l~~~d 79 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-VTMDAPVSSVALRQSGG-YVATI---GTKFCALN 79 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-EECSSCEEEEEEBTTSS-EEEEE---TTEEEEEE
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-EeCCCceEEEEECCCCC-EEEEE---CCeEEEEE
Confidence 344555556678999995 557777788999999999877542 2 22345677788887766 33332 56899999
Q ss_pred cCCCceEeeecC----CCCCeEEEEECCCCCEEEEeeCC---------CcEEEeecCC-CCceeEEEecCCcceEEECCC
Q psy16316 94 LHDNKYIRYFPG----HTKKVNSLCLSPIDDTFISGSYD---------KTVRLWDLRS-PNCQGIMHVSGSRPIAAFDPE 159 (335)
Q Consensus 94 ~~~~~~~~~~~~----H~~~V~~~~~~~~~~~l~s~s~D---------~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (335)
.++++....... ....++.+.+.|+|+++++...+ ..-++|.+.. +..............++++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 988765433221 12458899999999977765332 2345555543 232222222222345789999
Q ss_pred CCEE-EEEEcCCeEEEEEccCCCCCceee---EEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 160 GLIF-GVGVNSDTIKLYDVRSFDKGPFSN---FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 160 ~~~~-~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
++.+ ++.+.++.|.+||+.... +.... +...........+++++++|++.++...++.|..||..+++.+..+..
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~-G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQT-GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTT-CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCEEEEecCCCCcEEEEeccCCC-CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 9855 555667899999974211 11211 111111122346899999999888887888999999999988777654
Q ss_pred cccCCCCceEEEEc-CCCcEEEEEe
Q psy16316 236 FLNNKGCPLEASFT-PDSKYVISGS 259 (335)
Q Consensus 236 ~~~~~~~v~~~~~s-p~~~~l~tgs 259 (335)
. ...+.+++|. |+++.|...+
T Consensus 239 p---~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 P---VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp S---SSBEEEEEEESGGGCEEEEEE
T ss_pred C---CCCceEEEEeCCCCCEEEEEc
Confidence 2 3457889998 8877554444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-11 Score=107.48 Aligned_cols=259 Identities=11% Similarity=0.075 Sum_probs=172.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeecc-------cccceEEEEe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFT 72 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~ 72 (335)
.+++...+..-..+ .+.++|||++|..+. .++.|.++|..+.+....+... ......+.++
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence 44555555543444 899999999887775 4789999999999888776532 1235567888
Q ss_pred cCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEE----Ee
Q psy16316 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIM----HV 147 (335)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~----~~ 147 (335)
+++...+++....++.|.+.|+.+++.+..+.-- .. ....|++ ..+++.+.||++.+.|+.+++..... ..
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--DC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--Cc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 8887766654434789999999999988877631 11 2334443 56677778888888888554433211 11
Q ss_pred cCC--cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccCCCEEEEEeC---
Q psy16316 148 SGS--RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSADGKYILISTN--- 215 (335)
Q Consensus 148 ~~~--~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~~--- 215 (335)
... .....+.+++..+......+.+.+.|...........+..... .......++++|+++.++++..
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 100 0123567777766666678899999985421000001110000 0011123789999998877642
Q ss_pred -------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEECCCCeeEEEe
Q psy16316 216 -------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 216 -------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd~~~~~~~~~~ 278 (335)
++.|.++|+.+.+.++++.... .+..++|+||++ ++++.. .++.|.++|..+++.+..+
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999988875322 356799999999 888877 5899999999999888776
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-11 Score=115.81 Aligned_cols=261 Identities=12% Similarity=0.103 Sum_probs=161.4
Q ss_pred CCCCCEEEEecCCCe---EEEEEccC----Ccceeeeec-------ccccceEEEEecCCCeeEEeecCC-C--CeEEEE
Q psy16316 30 SADGLLLISCSEDDQ---IVIYDCEL----GTNKRTVFS-------KKYGVDLIRFTHAKQAAIHASTKI-D--DTVRYL 92 (335)
Q Consensus 30 s~~g~~lasgs~Dg~---i~lwd~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-d--~~i~~~ 92 (335)
+|+|++++-...++. ..||-... +...+.+.. +...+..++|+|++....+.+... + ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998886665543 56676543 222333211 123567889999887655544321 1 479999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCc--------------EEEeecCCCCcee--EEEecC---Ccce
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT--------------VRLWDLRSPNCQG--IMHVSG---SRPI 153 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~--------------i~vWd~~~~~~~~--~~~~~~---~~~~ 153 (335)
|+.+++.+... .+...+.+++|+|+ +.|+.++.|+. |++|++.++.... +..... ....
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 99999876532 12222358899999 98888887665 8999998766432 222221 1335
Q ss_pred EEECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC----CeEEEEEC
Q psy16316 154 AAFDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG----SIIRTFDA 224 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----~~i~i~d~ 224 (335)
..++|+|++++..+.+ ..|.+||+..........+.. ..... ... ++|+|..|+..++. ..|.+||+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~-~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP--DLKAQ-WDF-VDGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC--SSSSC-EEE-EEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC--CCCce-EEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 6799999988877654 389999987531010222221 11112 222 45899998887763 45999999
Q ss_pred CCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC-CCeeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 225 YNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
.++. ..+.+..+ ....+..++++ ++.++++...|+..+||... ++.....+...+.+.|..++++|++..++
T Consensus 349 ~~~~~~~~~l~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 349 SGSTPRFDTVVPE--SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp SSSSCEEEEEECC--CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred CCCccccEEEecC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 8752 33333322 12224456676 56788899999987777554 35455555443467789999999987555
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-11 Score=106.50 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=177.6
Q ss_pred EEECCCCCEEEEecC-----CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEE
Q psy16316 27 IDYSADGLLLISCSE-----DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLS 93 (335)
Q Consensus 27 v~~s~~g~~lasgs~-----Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~ 93 (335)
....|++..+..... +++|.+.|..+++.+..+.....+ . +.+++++...+.+.. ..++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445799988777755 689999999999988887655444 3 899999887776652 2367899999
Q ss_pred cCCCceEeeecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 94 LHDNKYIRYFPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 94 ~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
..+.+.+..+.-. ...-..+.++|+|++|+.+.. +++|.++|+.+.+....+...+. ...+......++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF 193 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence 9999988876421 124557899999998887764 68999999999887766654332 122333345555
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCC-Ccc-ceEEEEc-cCCCEEEEEeCCCeEEEEECCCCe--eeeeec-----
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEK-ECD-WTGIKFS-ADGKYILISTNGSIIRTFDAYNGQ--CLQTLA----- 234 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~-~~~~~~s-~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~----- 234 (335)
+.+.||++.+.++...... .......... ... .....|. ++|++++ .+.++.|+++|+.+.. ....+.
T Consensus 194 ~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence 6667777777777542111 1111000000 011 1123554 6776555 5567899999987653 222221
Q ss_pred ----ccccCCCCceEEEEcCCCcEEEEEeC----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEE
Q psy16316 235 ----GFLNNKGCPLEASFTPDSKYVISGST----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMA 299 (335)
Q Consensus 235 ----~~~~~~~~v~~~~~sp~~~~l~tgs~----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~ 299 (335)
+.. ......++++|+++.+..... ..+|.+.|..+++.+..++.++ .++.++|+|+++ +|.
T Consensus 272 ~~~~g~~--p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 272 ERADGWR--PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLY 347 (386)
T ss_dssp HHHTTEE--ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEE
T ss_pred ccccccc--CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEE
Confidence 100 111234788998887666532 2579999999998888776543 678999999996 554
Q ss_pred ee---eceeEEecc
Q psy16316 300 SA---CTNLAFWIP 310 (335)
Q Consensus 300 s~---~~~~~~w~~ 310 (335)
++ ++++.++..
T Consensus 348 ~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 348 ALSTGDKTLYIHDA 361 (386)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCeEEEEEC
Confidence 43 355666643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-09 Score=92.53 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=157.0
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+...+.++.++++|.++++...++.|..||.+ ++. ..+. .....+..+.+.+++ .+.++...++.+..+|. ++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CC
Confidence 45779999999999998888888999999986 332 2222 123345666666543 34444445788999998 55
Q ss_pred ceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 98 KYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 98 ~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
+... ....+...+..+++.+++++.++...++.|..||. +++........ .....+++++++.++++...++.|..
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 130 KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 4433 23345567899999999988888777899999998 55543321111 12235678899998887767889999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
||. ... ...+.. ......+.+++++++|+..++...++.|..||. +++ +..+.. ......+..+++ +++.+
T Consensus 209 ~~~-~g~---~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~-~~~~~~~~~i~~-~~g~l 279 (299)
T 2z2n_A 209 ITT-SGE---ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPI-QIKSAEPHGICF-DGETI 279 (299)
T ss_dssp ECT-TCC---EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEEC-SSSSCCEEEEEE-CSSCE
T ss_pred ECC-CCc---EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeC-CCCCCccceEEe-cCCCE
Confidence 998 321 222211 122344678999999996666657788999998 454 233321 122345778899 98888
Q ss_pred EEEEeCCCcEEEEECCCC
Q psy16316 255 VISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~ 272 (335)
+++.+ .+.+..++..+.
T Consensus 280 ~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 280 WFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEET-TTEEEEEEEC--
T ss_pred EEEec-CCcEEEEEcCcc
Confidence 77765 566777776543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-10 Score=112.33 Aligned_cols=248 Identities=13% Similarity=0.129 Sum_probs=151.2
Q ss_pred ccCCccEEEEEECCCCCEEE-----EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC-------
Q psy16316 18 RENTDKITSIDYSADGLLLI-----SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI------- 85 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~la-----sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 85 (335)
.+|...+..+.|||||++|| +|+.+.+|++||+++++...... .......++|+ ++...++.+...
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 35667899999999999988 55666899999999998654311 11113567888 776655544321
Q ss_pred ----CCeEEEEEcCCCce--Eeee--cC-CCCCeEEEEECCCCCEEEE-ee---CCCcEEEeecCCCCc-eeEEEecCCc
Q psy16316 86 ----DDTVRYLSLHDNKY--IRYF--PG-HTKKVNSLCLSPIDDTFIS-GS---YDKTVRLWDLRSPNC-QGIMHVSGSR 151 (335)
Q Consensus 86 ----d~~i~~~~~~~~~~--~~~~--~~-H~~~V~~~~~~~~~~~l~s-~s---~D~~i~vWd~~~~~~-~~~~~~~~~~ 151 (335)
...|.+|++.++.. ...+ .. |...+.++.++|++++|+- .+ .++.|.++|+.++.. ...+......
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 24588999876542 2333 33 5556789999999997643 33 235899999977632 2222222111
Q ss_pred ceEEECCCCCEEEEEE-cC---CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CC--eEEEEEC
Q psy16316 152 PIAAFDPEGLIFGVGV-NS---DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GS--IIRTFDA 224 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~-~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~--~i~i~d~ 224 (335)
....+++++..++..+ .+ ..|..+|+..........+. .+.. .+. .|+++++.|+.... ++ .|++|++
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCS-SCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCC-CEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 2222555555544433 32 57888888764321122222 1222 222 89999998877654 33 6889998
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC----CcEEEEECCCCeeE
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD----GRIHIWNAEKGFKV 275 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d----g~v~iwd~~~~~~~ 275 (335)
..+. .+.+.. .....+..+.++|+++.|+....+ +.++.||+.++...
T Consensus 358 ~g~~-~~~l~~--p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 358 EGKR-VREVAL--PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp TSCE-EEEECC--SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCCe-eEEeec--CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7543 344321 122344566778888766555444 78999998877543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-10 Score=97.18 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=150.6
Q ss_pred eeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
+.+...........|+|+|+ +++++..++.|..|+. +++ ...+......+..+.+.+++. ++++...++.|.+++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC--EEEEECCCCEEEEEC
Confidence 44555566678899999998 6788888999999998 343 333434445567777777654 444444467888888
Q ss_pred cCCCceEeee---cCC-CCCeEEEEECCCCCEEEE----eeC-------------CCcEEEeecCCCCceeEEEecCCcc
Q psy16316 94 LHDNKYIRYF---PGH-TKKVNSLCLSPIDDTFIS----GSY-------------DKTVRLWDLRSPNCQGIMHVSGSRP 152 (335)
Q Consensus 94 ~~~~~~~~~~---~~H-~~~V~~~~~~~~~~~l~s----~s~-------------D~~i~vWd~~~~~~~~~~~~~~~~~ 152 (335)
.+ ++..... .+. ...++.+.+.++|++.+| |.. .+.|..+|..+++..... ......
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN 191 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence 76 5433222 121 235778999999998887 432 256788887666654433 222234
Q ss_pred eEEECCCCCEEEEEEcC------CeEEEEEccCCCCCceeeEE-eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 153 IAAFDPEGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.++++|+++.+.++... +.|.+||+.... ..... +.........+++++++|++.+ ++.+ .|.+|+.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~- 265 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS- 265 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-
Confidence 57899999866666554 689999986421 11111 1111122235689999999544 4444 4999998
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
+++.+..+... ..+..++|+|+++.|..++.++ ++.++
T Consensus 266 ~g~~~~~~~~~----~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 DGQLLGHIPTP----GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSCEEEEEECS----SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCEEEEEECC----CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 45555555432 1367899999998887777654 44443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-10 Score=99.55 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=147.4
Q ss_pred cceEEEEecCCCeeEEee-------cCCCCeEEEEEcCCCceEeeec----CCCCCeEEEEECCC-CCEEEEeeCCCcEE
Q psy16316 65 GVDLIRFTHAKQAAIHAS-------TKIDDTVRYLSLHDNKYIRYFP----GHTKKVNSLCLSPI-DDTFISGSYDKTVR 132 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-------~~~d~~i~~~~~~~~~~~~~~~----~H~~~V~~~~~~~~-~~~l~s~s~D~~i~ 132 (335)
....++|.+++. +.++ ...++.+..||..+++...... ++...+.+++++++ ++++++.. ++.|.
T Consensus 19 ~~~~~~~~~~g~--l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 19 GAEGPVFDKNGD--FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp TCEEEEECTTSC--EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CccCceECCCCC--EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345667764432 3333 3457889999988777543322 35577999999999 66555554 44799
Q ss_pred EeecCCCCceeE-EEec-----CCcceEEECCCCCEEEEEEcC---------------CeEEEEEccCCCCCceeeEEec
Q psy16316 133 LWDLRSPNCQGI-MHVS-----GSRPIAAFDPEGLIFGVGVNS---------------DTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 133 vWd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~d---------------~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
+||.. ++.... .... .....++++++|+++++...+ +.|..||.. +.......
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~- 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVDT- 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEEE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC----CCEEEecc-
Confidence 99987 554322 1111 123457889999988877654 456666543 11211111
Q ss_pred cCCCccceEEEEc----cCCCEEEEE-eCCCeEEEEECC-CCeee--eeecccccCC-CCceEEEEcCCCcEEEEEeCCC
Q psy16316 192 AEKECDWTGIKFS----ADGKYILIS-TNGSIIRTFDAY-NGQCL--QTLAGFLNNK-GCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 192 ~~~~~~~~~~~~s----~~~~~l~~~-~~~~~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~~~~sp~~~~l~tgs~dg 262 (335)
......+++++ |+++.++++ ..++.|.+|+.. +++.. ..+....... ..+..++++++|+++++...++
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 11123678999 999766655 457889999976 44321 1111111121 3467899999999999888889
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeeec--eeEEecc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASACT--NLAFWIP 310 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~~--~~~~w~~ 310 (335)
.|.+||..++.....+.. +...+.+++|+|++. +.++... .+..+.+
T Consensus 248 ~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999999875654444432 456889999999998 4455544 4555544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-09 Score=94.77 Aligned_cols=238 Identities=10% Similarity=0.029 Sum_probs=145.8
Q ss_pred ccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+++...+........+..|+|++ .++++...++.|.+||.++++... + .....+..+.+.+++.. ++++ +..+
T Consensus 38 ~~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~v~~i~~~~dg~l-~v~~---~~gl 111 (326)
T 2ghs_A 38 FAGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQ-LIAS---DDGL 111 (326)
T ss_dssp CCCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEE-EEEE---TTEE
T ss_pred cceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-ECCCcceEEEEeCCCeE-EEEE---CCCE
Confidence 34444444334445788999975 567777788999999998775432 2 22345777778776543 2332 3458
Q ss_pred EEEEcCCCceEeeec---CC-CCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCcceEEECCC
Q psy16316 90 RYLSLHDNKYIRYFP---GH-TKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~---~H-~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
.+||..+++...... ++ ...++++.++|+|+++++...+ +.|..+| +++.............++++|+
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPD 189 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTT
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCC
Confidence 899998877543322 11 2468899999999877765432 4455555 3333222222223345789999
Q ss_pred CCEEE-EEEcCCeEEEEEcc--CC-CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 160 GLIFG-VGVNSDTIKLYDVR--SF-DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 160 ~~~~~-~~~~d~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
++.+. +...++.|.+||+. .. .......+...........+++++++|.+.++...++.|..||. +++.+..+..
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~ 268 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV 268 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC
Confidence 98654 44556899999985 22 11111111111111223467999999998777767788999998 5666555543
Q ss_pred cccCCCCceEEEEc-CCCcEEEEEeC
Q psy16316 236 FLNNKGCPLEASFT-PDSKYVISGST 260 (335)
Q Consensus 236 ~~~~~~~v~~~~~s-p~~~~l~tgs~ 260 (335)
....+.+++|+ |+++.|..++.
T Consensus 269 ---~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 ---PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---SCSBEEEEEEESTTSCEEEEEEB
T ss_pred ---CCCCcEEEEEecCCCCEEEEEec
Confidence 22357889998 88776644443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-10 Score=101.03 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=148.5
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCcee
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQG 143 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~ 143 (335)
...+++.++. .++++...++.|+.||+.++.......... ... ++|+++++.|+.+..++ .|.++|...+....
T Consensus 133 P~~la~d~~g--~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 133 MWGIAAVGNN--TVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp EEEEEECSTT--EEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred ceEEEEeCCC--CEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4456666443 355555567899999998887666555432 233 89999999988888766 78888887655433
Q ss_pred EE----E-ecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEe--ccCCC-c-cceEEEEccCCCEEE-E
Q psy16316 144 IM----H-VSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF--AAEKE-C-DWTGIKFSADGKYIL-I 212 (335)
Q Consensus 144 ~~----~-~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~s~~~~~l~-~ 212 (335)
.. . .......++++| ++.+++ +..++.|..||..... ...+.. ..... . +...++|+|++..|+ +
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 32 1 112234578899 555555 6667899999986532 111110 11111 1 112899999644444 4
Q ss_pred EeCCCeEEEEECCCCeeeeeecccc------------cCCCCceEEEEcCCCcEEEEEe-CCCcEEEEECCCCeeEEEeC
Q psy16316 213 STNGSIIRTFDAYNGQCLQTLAGFL------------NNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 213 ~~~~~~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~~~~~~~~~~~ 279 (335)
....+.|+.|+.... ...+.+.. .....+..++++|+|+++++-+ .+++|+.|+..++.......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 556788999987643 33333221 0123477899999999989888 89999999977776443321
Q ss_pred C-C------------CCCCeEEEEeCCCCcEEEeeeceeEEe
Q psy16316 280 A-D------------HPSPVQTIQFNPKFNMMASACTNLAFW 308 (335)
Q Consensus 280 ~-~------------h~~~v~~v~~sp~~~~~~s~~~~~~~w 308 (335)
. . .-.....++++|++.++++...+-+|+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 1 0 013467899999988888776554444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-09 Score=93.55 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=143.0
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
....|.++... ++.+...++.|..||..+++.. .+. ....+.+++++++++++++. ++.|.+||..+++......
T Consensus 16 Egp~w~~~~~~-l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 16 ESPVWEEVSNS-LLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEETTTTE-EEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCeEECCCCE-EEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe
Confidence 34566654443 3344445788999999877653 332 35679999999999965554 6789999998766543333
Q ss_pred ecC-----CcceEEECCCCCEEEEEEcC---------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE
Q psy16316 147 VSG-----SRPIAAFDPEGLIFGVGVNS---------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 147 ~~~-----~~~~~~~~~~~~~~~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
... ....+.++|+|+++++.... ....+|.+... ....... ......++++|+|+++.|+.
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~~---~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HHVKKYF---DQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SCEEEEE---EEESBEEEEEECTTSCEEEE
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CCEEEEe---eccccccceEEcCCCCEEEE
Confidence 211 12346789999987765332 33455555431 1111111 11122368999999997765
Q ss_pred E-eCCCeEEEEEC--CCCeee--eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeE
Q psy16316 213 S-TNGSIIRTFDA--YNGQCL--QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQ 287 (335)
Q Consensus 213 ~-~~~~~i~i~d~--~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~ 287 (335)
+ +.++.|..|+. .++... +.+.........+..++++++|++.++...++.|.+||..++.....+.. +...++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t 244 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTT 244 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSSBEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCCCce
Confidence 4 55688999986 455431 12221111224567899999999888888888999999988887766654 456789
Q ss_pred EEEeC-CCCcEEE
Q psy16316 288 TIQFN-PKFNMMA 299 (335)
Q Consensus 288 ~v~~s-p~~~~~~ 299 (335)
+++|. |++..|.
T Consensus 245 ~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 245 SCCFGGKNYSEMY 257 (297)
T ss_dssp EEEEESGGGCEEE
T ss_pred EEEEeCCCCCEEE
Confidence 99998 8876443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=109.06 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=124.7
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-----------ceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-----------CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
.++.+++++...++++|+.|+ +++|++...+ ......... +..++| ++++++++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 5669865322 112233444 666778 88999998 8899999999
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
++.... .... .....+..+.+.+. .+++.+.+|.+.+||+.++.... + ...+.+++|||+| ++.
T Consensus 114 ~sl~~~--~~~~---~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~------~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 114 EELSEF--RTVT---SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L------AQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSTTCE--EEEE---ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E------EESEEEEEECSSE--EEE
T ss_pred hhhhcc--Cccc---eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c------cCCceEEEEcCCc--eEE
Confidence 875422 1111 12234556666544 38888999999999999876543 1 2357899999999 788
Q ss_pred EeCCCcEEEEECCCCee--EEEeC--------CCCCCCeEEEEeCCCCcEEEe
Q psy16316 258 GSTDGRIHIWNAEKGFK--VCVLD--------ADHPSPVQTIQFNPKFNMMAS 300 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~--~~~~~--------~~h~~~v~~v~~sp~~~~~~s 300 (335)
|..||++++|+...+.. ...++ .+|...|.++.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999998876652 33341 147789999999999988875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-10 Score=102.03 Aligned_cols=271 Identities=13% Similarity=0.060 Sum_probs=172.5
Q ss_pred CCCCEEEEecC-C----CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCCC
Q psy16316 31 ADGLLLISCSE-D----DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHDN 97 (335)
Q Consensus 31 ~~g~~lasgs~-D----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~ 97 (335)
+++.++..... + ++|.+.|..+.+.+..+.....+ .+.+++++...+++.. ..++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 56665444433 3 79999999999998888765554 7899999887776653 24678999999999
Q ss_pred ceEeeecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEE
Q psy16316 98 KYIRYFPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGV 167 (335)
Q Consensus 98 ~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 167 (335)
+.+..+.-- ......+.++|+|++|+.+.. +++|.+.|+.+.+....+...+. ....|+ ...+++.+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEc
Confidence 988776421 123457899999998888764 68999999999887665554332 112222 24455555
Q ss_pred cCCeEEEEEccCCCCCceeeE--EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee--eeeccc-------
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNF--KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL--QTLAGF------- 236 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~------- 236 (335)
.|+++.+.+..... ..... .+.....-....+.+++++..++..+..+.+.+.|....... ..+...
T Consensus 237 ~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 237 RDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp TTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred CCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence 66666666663211 11000 000000001123578999988888788889999998654321 111100
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeC----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee---
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGST----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--- 302 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--- 302 (335)
.........++++|+++.+.+... ++.|.+.|..+.+.+..++.+ ..-+.++|+|+++ ++.++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTT
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCC
Confidence 000011123789999886555432 357999999999888777543 2467999999998 666664
Q ss_pred ceeEEecc
Q psy16316 303 TNLAFWIP 310 (335)
Q Consensus 303 ~~~~~w~~ 310 (335)
+++.++.+
T Consensus 393 ~~VsVID~ 400 (426)
T 3c75_H 393 QTLHIYDA 400 (426)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEC
Confidence 45666543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-10 Score=99.90 Aligned_cols=247 Identities=11% Similarity=-0.019 Sum_probs=155.9
Q ss_pred EEEEecCCC----eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCCCceEee
Q psy16316 35 LLISCSEDD----QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 35 ~lasgs~Dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~ 102 (335)
.+++-..++ +|.+.|.++++.+..+.....+ .+.+++++...+++.. ..++.|.+||+.+++.+..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 444444455 8889999999998888766555 7999999887777653 3478999999999999988
Q ss_pred ecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEE--eecCCCCceeEEEecC--------CcceEEECCCCCEE
Q psy16316 103 FPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRL--WDLRSPNCQGIMHVSG--------SRPIAAFDPEGLIF 163 (335)
Q Consensus 103 ~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~v--Wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 163 (335)
++-+ ......+.++|+|++|+.+.. +..+.+ +|+.+ ...+...+ ....+.+++++.++
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~ 188 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLA 188 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEE
Confidence 7633 123568899999998888865 467888 99865 12221111 01111222222222
Q ss_pred EE-------------------------------------EEcCCeEEEEEccCCCCCceeeEEeccC-------CCccce
Q psy16316 164 GV-------------------------------------GVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWT 199 (335)
Q Consensus 164 ~~-------------------------------------~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~ 199 (335)
.. .+. +.+.+.|................. ....+.
T Consensus 189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred EEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 21 112 444445543210000000000000 000111
Q ss_pred EEEEccCCCEEEEEeC---C------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEE
Q psy16316 200 GIKFSADGKYILISTN---G------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWN 268 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~---~------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd 268 (335)
.++++|+++.++++.. + ..+.++|+.+++.++++.... .+..++|+|||+ .+++.. .++.|.++|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2789999998887643 2 356699999998888775432 356799999997 567776 599999999
Q ss_pred CCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 269 AEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 269 ~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
+.+++.+..++.+ ..-+.+++++
T Consensus 344 ~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCCC--SCCCEEECCC
T ss_pred CCCCcEEEEEECC--CCCCEEEeec
Confidence 9999888877642 2335777765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-08 Score=86.25 Aligned_cols=232 Identities=11% Similarity=0.052 Sum_probs=153.8
Q ss_pred cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee
Q psy16316 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 143 (335)
.+..+.+.+++ .+..+...++.+.++|.. ++... .+..+...+.++++.+++++.++...++.|..+|.. ++...
T Consensus 21 ~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 21 GPYGITSSEDG--KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp CEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CcceeeECCCC--CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 34455555443 344444457889999887 55443 233445678999999999988887778999999987 54432
Q ss_pred EEEec---CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 144 IMHVS---GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 144 ~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
+... .....++++++++++++...++.|..+|.. . ....+.. ........+++++++++..++...++.|.
T Consensus 97 -~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g---~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 97 -YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G---TIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp -EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S---CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C---CEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 2221 223456788999988887767889999875 1 1222221 11223457899999999666666678899
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEe
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s 300 (335)
.++. +++... +.. ......+..++++|++.++++....+.|.+|+. ++.........+...+..++++|+|.+.++
T Consensus 171 ~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 554432 221 122345778999999998888877888999998 444333222234567889999999988777
Q ss_pred ee--ceeEEecc
Q psy16316 301 AC--TNLAFWIP 310 (335)
Q Consensus 301 ~~--~~~~~w~~ 310 (335)
.. +.+..+.+
T Consensus 247 ~~~~~~i~~~~~ 258 (300)
T 2qc5_A 247 EWGANQIGRITN 258 (300)
T ss_dssp ETTTTEEEEECT
T ss_pred ccCCCeEEEECC
Confidence 63 45666654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-09 Score=90.68 Aligned_cols=227 Identities=12% Similarity=0.098 Sum_probs=142.2
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 138 (335)
+...........|.+++.. ++.+...++.+..|+. +++ ...+..+...+..+++.++|+++++...++.|.+||..
T Consensus 40 l~~~~~~~egp~~~~~g~~-l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRT-LVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTE-EEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EecCCcCccCCeEeCCCCE-EEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3333334556777776553 3344556788999988 444 34555566789999999999977776667899999986
Q ss_pred CCceeEEEe-c----CCcceEEECCCCCEEEE----EEc-------------CCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 139 PNCQGIMHV-S----GSRPIAAFDPEGLIFGV----GVN-------------SDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 139 ~~~~~~~~~-~----~~~~~~~~~~~~~~~~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
++....... . .....+.++++|.++++ |.. .+.|..+|..+.. ..... ...
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---~~~~~----~~~ 188 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---LQRMA----DLD 188 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---CEEEE----EES
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---EEEEe----cCC
Confidence 443322211 1 11234788999998886 321 2456666654322 11111 112
Q ss_pred cceEEEEccCCCEEEEEeCC------CeEEEEECCCCeeeeeecccc-cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 197 DWTGIKFSADGKYILISTNG------SIIRTFDAYNGQCLQTLAGFL-NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
..++++|+|+++.|+++... +.|+.|++.... +....... .....+..++++++|++.++. .+| |.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECC
Confidence 33679999999988877665 689999987654 21111110 112345678999999965554 444 999998
Q ss_pred CCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 270 EKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 270 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
++.....+.. + ..+..++|+|+++.|..+.
T Consensus 266 -~g~~~~~~~~-~-~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 266 -DGQLLGHIPT-P-GTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp -TSCEEEEEEC-S-SCCCEEEECTTSCEEEEEE
T ss_pred -CCCEEEEEEC-C-CceeEEEEeCCCCEEEEEc
Confidence 4655555543 2 3588999999986555443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-09 Score=102.04 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=167.1
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecc-c----ccce-EEEEecCCCeeEEeecC----CCCeEEEEEcCCCceEe
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSK-K----YGVD-LIRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~ 101 (335)
++..++.++.|+.+..+|.++|+.+...... . ..+. .... . ....++..++ .++.+..+|..+++.+-
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-V-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-E-CCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3567888899999999999999987665432 1 1111 0011 1 2222332222 36899999999998775
Q ss_pred eecC-------------------------------CCCCeEEEEECCCCCEEEEeeCCCc-------------------E
Q psy16316 102 YFPG-------------------------------HTKKVNSLCLSPIDDTFISGSYDKT-------------------V 131 (335)
Q Consensus 102 ~~~~-------------------------------H~~~V~~~~~~~~~~~l~s~s~D~~-------------------i 131 (335)
.+.. +......+++.|+..++..++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 5431 0111125788888888888887764 9
Q ss_pred EEeecCCCCceeEEEecC--------CcceE--EECCCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEec-------
Q psy16316 132 RLWDLRSPNCQGIMHVSG--------SRPIA--AFDPEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFA------- 191 (335)
Q Consensus 132 ~vWd~~~~~~~~~~~~~~--------~~~~~--~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------- 191 (335)
..||..+++....+.... ..+.+ .+..+|. .++.+..++.+.++|.++.+. .....+.
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL--LSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE--eccccccccccccc
Confidence 999999998776554321 11111 1222454 677888899999999876432 1100000
Q ss_pred -------------------c----------CCCccceEEEEccCCCEEEEEeC---------------------------
Q psy16316 192 -------------------A----------EKECDWTGIKFSADGKYILISTN--------------------------- 215 (335)
Q Consensus 192 -------------------~----------~~~~~~~~~~~s~~~~~l~~~~~--------------------------- 215 (335)
. .....+..++++|+...+++.+.
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0 01113456899999888887632
Q ss_pred ------------------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE
Q psy16316 216 ------------------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 216 ------------------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~ 277 (335)
++.|+.||+.+++.+-++..... ...-.+...+.+++.|+.||.++.||..+|+++..
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 26799999999987766543221 22235666788999999999999999999998877
Q ss_pred eCCCCCCCeEEEEeCCCCcEEE
Q psy16316 278 LDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 278 ~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
...++.....-+.|..+|++.+
T Consensus 512 ~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 512 QPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EECSSCCCSCCEEEEETTEEEE
T ss_pred eeCCCCcccCceEEEECCEEEE
Confidence 7655444444577888887543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-08 Score=88.23 Aligned_cols=221 Identities=13% Similarity=0.078 Sum_probs=137.8
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
...+|.++....+. +...++.|..||..+++... +. +...+.++.+.++++++++. .+ .|.+||..+++......
T Consensus 52 egp~~~~~~~~l~~-~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASGTAWW-FNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEETTTTEEEE-EEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEE-EECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 34567765544433 34447889999998776432 32 34679999999999877765 34 49999998776543322
Q ss_pred ecC-----CcceEEECCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCC
Q psy16316 147 VSG-----SRPIAAFDPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNG 216 (335)
Q Consensus 147 ~~~-----~~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~ 216 (335)
... ....+.++|+|+++++...+ ....||.+.. +....+.. .....++++|+|+++.++.+ +.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~---g~~~~~~~---~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---GKVTKLFA---DISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---TEEEEEEE---EESSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC---CcEEEeeC---CCcccCCeEEcCCCCEEEEEECCC
Confidence 211 12346789999987755422 2334444432 11221111 11124679999999977665 456
Q ss_pred CeEEEEECC--CC-eee--eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 217 SIIRTFDAY--NG-QCL--QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 217 ~~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
+.|.+|+.. ++ +.. +.+.........+..++++++|.++++...++.|.+||. ++.....+.. +...+.+++|
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af 278 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAF 278 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEE
Confidence 789999985 55 321 112111112234567899999998888777788999998 5655555543 4457899999
Q ss_pred C-CCCcEEEe
Q psy16316 292 N-PKFNMMAS 300 (335)
Q Consensus 292 s-p~~~~~~s 300 (335)
+ |++..|..
T Consensus 279 ~g~d~~~L~v 288 (326)
T 2ghs_A 279 IGPDASRLLV 288 (326)
T ss_dssp ESTTSCEEEE
T ss_pred ecCCCCEEEE
Confidence 8 88765543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-09 Score=102.37 Aligned_cols=260 Identities=11% Similarity=0.066 Sum_probs=169.9
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecc-c----ccceE-EEEecCCCeeEEeecC----CCCeEEEEEcCCCceEe
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSK-K----YGVDL-IRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~ 101 (335)
++..++.++.|+.+..+|.++|+.+...... . ..+.. ... .....++.+.. .++.++.+|..+++.+-
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4567888899999999999999988766543 1 11111 111 12223333222 26899999999998876
Q ss_pred eecCCCC--------------------------------CeEEEEECCCCCEEEEeeCCC-------------------c
Q psy16316 102 YFPGHTK--------------------------------KVNSLCLSPIDDTFISGSYDK-------------------T 130 (335)
Q Consensus 102 ~~~~H~~--------------------------------~V~~~~~~~~~~~l~s~s~D~-------------------~ 130 (335)
.+..... ....+++.|++.++..++.++ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 5542211 113577888888888777664 5
Q ss_pred EEEeecCCCCceeEEEecCC---------cce-EEECCCC---CEEEEEEcCCeEEEEEccCCCCCceeeEEecc-----
Q psy16316 131 VRLWDLRSPNCQGIMHVSGS---------RPI-AAFDPEG---LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----- 192 (335)
Q Consensus 131 i~vWd~~~~~~~~~~~~~~~---------~~~-~~~~~~~---~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----- 192 (335)
|..+|..+++....++.... .++ .....+| ..++.+..++.+.++|..+.+. ........
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWAS 362 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCccc
Confidence 99999999987765543211 111 2222356 6788888999999999876431 11111100
Q ss_pred ---------------------------CCCccceEEEEccCCCEEEEEeC------------------------------
Q psy16316 193 ---------------------------EKECDWTGIKFSADGKYILISTN------------------------------ 215 (335)
Q Consensus 193 ---------------------------~~~~~~~~~~~s~~~~~l~~~~~------------------------------ 215 (335)
.....+..++++|+...+++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 00122446899999988887643
Q ss_pred -------------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 216 -------------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 216 -------------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
.+.|..||+.+++.+-++... ..+....+.+++..++.|+.||.+++||..+++.+..+..++
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 167999999999877665421 122334566778888999999999999999999888776555
Q ss_pred CCCeEEEEeCCCCcEEE
Q psy16316 283 PSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~~~ 299 (335)
.....-+.|.++|++++
T Consensus 519 ~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCCEEEEeCCEEEE
Confidence 44445567778886543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=104.04 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=125.5
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCc---------cee-eeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGT---------NKR-TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+++.+++++...++++|+.|+ +++|+++... ... ....... +..++| +.....+ + .++.+++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v--~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLV--S-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEE--E-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEE--E-cCCcEEEE
Confidence 589999999999999999984 5569876443 111 1122333 888888 4433333 3 67899999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
|+.+.........|...+.++.+.+. .++.++.||+|.+||+..+.... ....+.+++|+|.| ++.|..|+++
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 99877666667778888998887764 38889999999999999777643 34467789999999 5778899999
Q ss_pred EEEEccCCCCCceeeEEe---cc---CCCccceEEEEccCCCEEEE
Q psy16316 173 KLYDVRSFDKGPFSNFKF---AA---EKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~---~~---~~~~~~~~~~~s~~~~~l~~ 212 (335)
++|+...........+.. .. .+...+.++.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999876532100111100 01 14567889999999998886
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-10 Score=97.87 Aligned_cols=234 Identities=12% Similarity=0.029 Sum_probs=150.8
Q ss_pred cCCccEEEEEECCCCCEEEEecC-----CCeEEEEEccCCcceeeeecc------cccceEEEEecCCCeeEEeecC--C
Q psy16316 19 ENTDKITSIDYSADGLLLISCSE-----DDQIVIYDCELGTNKRTVFSK------KYGVDLIRFTHAKQAAIHASTK--I 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~-----Dg~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~ 85 (335)
+|-..+..+.|+++|+++++-.. ++.|.+||+.+++..+.+... ...+..+++.+.....+++..+ .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 46678999999999987665433 679999999988866555322 1235677887654444333321 5
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeE-EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVN-SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.|+.++.|... ..-++++|+++.+.
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~-------------~~gia~s~dg~~ly 210 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG-------------VNGIVLDAENEWLY 210 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC-------------EEEEEECTTSCEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecc-------------cceeEeccCCCEEE
Confidence 78999999999988888776643211 13344567677778889988877521 23478999998766
Q ss_pred EEEcCC-eEEEEEccCCCCCcee------eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 165 VGVNSD-TIKLYDVRSFDKGPFS------NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 165 ~~~~d~-~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++...+ .+..++.......... .+... .......+++++++|.++++...++.|..||..+++. ..+...
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~- 287 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTD- 287 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEEC-
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEEC-
Confidence 665544 5555543211100000 00000 0011235699999999988888889999999866653 233221
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.....+..++|+|+++++++.+..+++.+|+
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1234678899999999988888766665554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-08 Score=89.17 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=139.9
Q ss_pred CCCCEE-EEecCCCeEEEEEccCC----cceeeeecc----c---ccceEEEEecCCCeeEEeecC----CCCeEEEEEc
Q psy16316 31 ADGLLL-ISCSEDDQIVIYDCELG----TNKRTVFSK----K---YGVDLIRFTHAKQAAIHASTK----IDDTVRYLSL 94 (335)
Q Consensus 31 ~~g~~l-asgs~Dg~i~lwd~~~~----~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~ 94 (335)
+++++| ++|-.+++|.+.|+.+. +..+++... + .....+.+.+++ ..+.+.+. ..+.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788765 45668899999999765 444444210 1 122334555655 22222222 2378999999
Q ss_pred CCCceEeeecCCCC---CeEEEEECCCCCEEEEee-------------------CCCcEEEeecCCCCceeEEEecC--C
Q psy16316 95 HDNKYIRYFPGHTK---KVNSLCLSPIDDTFISGS-------------------YDKTVRLWDLRSPNCQGIMHVSG--S 150 (335)
Q Consensus 95 ~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s-------------------~D~~i~vWd~~~~~~~~~~~~~~--~ 150 (335)
.+.+.+..++.-.. .-..+.|+|+++.+++.. .+.+|.+||+.+++....+.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999988863222 123578899999988885 47999999999876555555431 1
Q ss_pred cce-E--EECCCCCEEEEEE------cCCeEEEEEccCCCCCceeeEEe---ccC---C------------CccceEEEE
Q psy16316 151 RPI-A--AFDPEGLIFGVGV------NSDTIKLYDVRSFDKGPFSNFKF---AAE---K------------ECDWTGIKF 203 (335)
Q Consensus 151 ~~~-~--~~~~~~~~~~~~~------~d~~v~iwd~~~~~~~~~~~~~~---~~~---~------------~~~~~~~~~ 203 (335)
.+. + +++|+++++.++. .+++|.+|.... +.....+. ... . ......+.+
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 221 2 3599998876665 456787665542 11111110 000 0 122467899
Q ss_pred ccCCCEEEEEeCC-CeEEEEECCC---Ceeeeeeccc-----------ccCCCCceEEEEcCCCcEEEEEe
Q psy16316 204 SADGKYILISTNG-SIIRTFDAYN---GQCLQTLAGF-----------LNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 204 s~~~~~l~~~~~~-~~i~i~d~~~---~~~~~~~~~~-----------~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
||||++|.++..+ +.|.+||+.. .+.+..+... ......+..+.++|||++|.++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999988764 6899999853 3334333211 00012367899999999988887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-08 Score=95.40 Aligned_cols=224 Identities=13% Similarity=0.111 Sum_probs=140.9
Q ss_pred ccceEEEEecCCCeeEEee---cCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCCCEEEEeeCCCc---------
Q psy16316 64 YGVDLIRFTHAKQAAIHAS---TKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDTFISGSYDKT--------- 130 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~---~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~--------- 130 (335)
..+..++|++++....+.. ++....|+++|+.+++.+.. +.+ ....+++|+ |++.|+.++.|..
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3567788999887655443 22236899999999986543 221 113578899 9999999888854
Q ss_pred ----EEEeecCCCCceeE--EEecC--C--cceEEECCCCCEEEEEEc----CCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 131 ----VRLWDLRSPNCQGI--MHVSG--S--RPIAAFDPEGLIFGVGVN----SDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 131 ----i~vWd~~~~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
|++|++.++..... ..... . .....++|+|++++.... .+.+.++|+..... ....+... ...
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~~~l~~~--~~~ 282 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PLLTVQGD--LDA 282 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CCEEEECS--SSS
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ceEEEeCC--CCc
Confidence 99999987764322 22221 1 234578999998755432 35899999875421 22222211 111
Q ss_pred cceEEEEccCCCEEEEEeCC----CeEEEEECCCCee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCC---cEEEE
Q psy16316 197 DWTGIKFSADGKYILISTNG----SIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG---RIHIW 267 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~----~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iw 267 (335)
.... +++++..|+..++. ..|..+++.++.. .+.+..+ ...+. .|+|++++|+....++ .|++|
T Consensus 283 -~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 283 -DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp -CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred -eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 1222 67777777665542 5799999987654 2334332 22333 8999998887766544 68999
Q ss_pred ECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 268 NAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 268 d~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+ ....+...+.+.+..++++|++..++..
T Consensus 356 d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 356 DYEGK-RVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp CTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred ECCCC-eeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 98744 3444544455678888889988765533
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-06 Score=73.71 Aligned_cols=251 Identities=9% Similarity=0.049 Sum_probs=149.0
Q ss_pred CEEEEecCCCeEEEEEccCCcce----ee-eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCC
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNK----RT-VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK 108 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~ 108 (335)
.+|..+.. +.|+.+|++..... .. +......+..+++.+.....+. +....+.|..+++........+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~-~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYW-TDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEE-EETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEE-EECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34444443 47888888654321 11 1112234566777765554444 344578899999877654444433335
Q ss_pred CeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEc--CCeEEEEEccCCCCC
Q psy16316 109 KVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVN--SDTIKLYDVRSFDKG 183 (335)
Q Consensus 109 ~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~--d~~v~iwd~~~~~~~ 183 (335)
....+++.+++ ...++-...+.|.++|+............ ....-++++|+ +.++++... .+.|..+++....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-- 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-- 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--
Confidence 67899999865 45566667789999998754332222211 12234678885 555555443 4688888875321
Q ss_pred ceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
...+. ........+++++|++..|..+.. .+.|..+|.........+. ....+..++.. ++.++++....+
T Consensus 158 -~~~~~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----~~~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 158 -RRILA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----GLQYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp -CEEEE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----CCCSEEEEEEE-TTEEEEEETTTT
T ss_pred -cEEEE--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----CCCCceEEEEe-CCEEEEEECCCC
Confidence 11111 111123478999998877766554 5789999987544332222 12345566664 445556655678
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+|.++|..++.....+..+....-..+++.|++.
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999988877777543222346788888764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-08 Score=90.71 Aligned_cols=220 Identities=16% Similarity=0.115 Sum_probs=143.4
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecC-CCCCeEEEEE-C-CCCCEEEEee------------------CCCcEEEeecC
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPG-HTKKVNSLCL-S-PIDDTFISGS------------------YDKTVRLWDLR 137 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-H~~~V~~~~~-~-~~~~~l~s~s------------------~D~~i~vWd~~ 137 (335)
++.....++.|.+.|+.+.++.+.++- .......+++ . |++.+++.++ .++.+.+.|..
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 183 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence 344556788899999999998774431 1245778887 4 8898888874 45689999999
Q ss_pred CCCceeEEEecCCcceEEECCCCCEEEEEEcCC--------------------------------------eEEEEEccC
Q psy16316 138 SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD--------------------------------------TIKLYDVRS 179 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------------------------------------~v~iwd~~~ 179 (335)
+.+....+...+.-..+.++|+|+++.+.+.+. .|.+.|.++
T Consensus 184 t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 184 KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 877766666655555678999999887776432 255555543
Q ss_pred CCCCc-eeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeee--------eeecccccCCCCceEEEEc
Q psy16316 180 FDKGP-FSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCL--------QTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~--------~~~~~~~~~~~~v~~~~~s 249 (335)
..... ...+.... ...++.++|||++++++.. +..|.++|+.+.+.. ..+.........+..++|+
T Consensus 264 ~~~~~~~~~Ipvg~----~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~ 339 (595)
T 1fwx_A 264 EASSLFTRYIPIAN----NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD 339 (595)
T ss_dssp GGCCSSEEEEEEES----SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEEC
T ss_pred cCCceeEEEEecCC----CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEEC
Confidence 11111 11111111 1246899999999988764 578999999865310 0011111122347889999
Q ss_pred CCCcEEEEEeCCCcEEEEECCC----------CeeEEEeCCCCCCC-----eEEEEeCCCCcEEEeeec
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEK----------GFKVCVLDADHPSP-----VQTIQFNPKFNMMASACT 303 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~----------~~~~~~~~~~h~~~-----v~~v~~sp~~~~~~s~~~ 303 (335)
|+|..+++.-.|+.|.+||+.+ ...+..++- |-.+ -....++|+|++|.+..+
T Consensus 340 ~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 340 GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEEEEcCC
Confidence 9996667777899999999876 344555543 3222 123456899999888753
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-10 Score=101.49 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=102.1
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCC-e
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK-V 110 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~-V 110 (335)
++..+++++.||.|+.||.++|+....... ..+....+..+ ..+++.++.|+.+..||..+++.+..++.+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999998876654 22222222222 224455567999999999988876665544221 1
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEe
Q psy16316 111 NSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190 (335)
Q Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~ 190 (335)
.+.-....+..+++++.|+.|+.||..+++....+.... ...+.|++..+++++.++.+..||.++.+..-......
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 110011134578888999999999999988765443322 12345677788888889999999998654221111110
Q ss_pred ccCCCccceEEEEccCC---CEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 191 AAEKECDWTGIKFSADG---KYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 191 ~~~~~~~~~~~~~s~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
+....++++. ..+++++.++.++.||..+++.+.+.
T Consensus 161 -------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 161 -------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp -------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred -------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 1122333332 45677888999999999999876544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=100.59 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=112.0
Q ss_pred EeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCc-ceEEE
Q psy16316 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSR-PIAAF 156 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~-~~~~~ 156 (335)
++.++.|+.+..||..+++.+-.++. +.+.+..+.+++..+++++.|+.|+.||..+++........ ... ....+
T Consensus 12 v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~ 89 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR 89 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE
Confidence 33445689999999999998877776 55666666677778888899999999999887764332211 000 00011
Q ss_pred CCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 157 DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 157 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
. .+..+++++.++.+..||..+.+.. ..+.. .. ...++|++..+++++.++.|+.||..+++....+...
T Consensus 90 ~-~~~~v~~g~~dg~v~a~D~~tG~~~--w~~~~--~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 90 S-SDGILYMGKKQDIWYVIDLLTGEKQ--QTLSS--AF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp ------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred e-cCCEEEEEeCCCEEEEEECCCCcEE--EEecC--CC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 1 2345667778899999998864321 11111 00 1345678888999989999999999999876554321
Q ss_pred ccCCCCceEEEEcCCC---cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEE-EEeCCCCcE
Q psy16316 237 LNNKGCPLEASFTPDS---KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT-IQFNPKFNM 297 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~---~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~-v~~sp~~~~ 297 (335)
. . ...+++++. ..+++++.||.|+.||..++....... ...++.. .++++++..
T Consensus 160 ~-~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 160 D-Y----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGLR 217 (369)
T ss_dssp E-E----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSCE
T ss_pred c-c----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCceE
Confidence 1 1 113344432 457778899999999999998776654 3345543 456777754
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.5e-07 Score=81.90 Aligned_cols=223 Identities=10% Similarity=0.088 Sum_probs=140.9
Q ss_pred CeeEEeecCCCCeEEEEEcCCC----ceEeeec-------CCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCC
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDN----KYIRYFP-------GHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRS 138 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~-------~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~ 138 (335)
...+++.+..++.|.++|+.+. +.+++++ .....-..+...|+| .++++..+ +.|.+.|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 3456667777899999999755 6666663 111234567788999 88887776 7899999999
Q ss_pred CCceeEEEecCCc----ceEEECCCCCEEEEEE-------------------cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 139 PNCQGIMHVSGSR----PIAAFDPEGLIFGVGV-------------------NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 139 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
.+....+...... .-..++|+++.+++.. .+++|.+||+.+. .....+.... ..
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~~tI~vg~-~g 250 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRIHSLTLGE-EN 250 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEEEEEESCT-TE
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--cEeeEEecCC-CC
Confidence 8877665433211 1256799999887773 3689999999752 2222222211 11
Q ss_pred ccceEEEE--ccCCCEEEEEeC------CCeEEEEECCCCee--eeee--cc-------------cccCCCCceEEEEcC
Q psy16316 196 CDWTGIKF--SADGKYILISTN------GSIIRTFDAYNGQC--LQTL--AG-------------FLNNKGCPLEASFTP 250 (335)
Q Consensus 196 ~~~~~~~~--s~~~~~l~~~~~------~~~i~i~d~~~~~~--~~~~--~~-------------~~~~~~~v~~~~~sp 250 (335)
.....+.| +|+++++.+++. ++.|.+|....++. .+.+ .. +......+..+.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 12234555 999999888775 45676655443321 1111 00 000013467899999
Q ss_pred CCcEEEEEeC-CCcEEEEECCC---CeeEEEeCCC-------CC--C----CeEEEEeCCCCcEEEeee
Q psy16316 251 DSKYVISGST-DGRIHIWNAEK---GFKVCVLDAD-------HP--S----PVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 251 ~~~~l~tgs~-dg~v~iwd~~~---~~~~~~~~~~-------h~--~----~v~~v~~sp~~~~~~s~~ 302 (335)
||++|.++.. .+.|.+||+.+ ......+..+ |+ . .=..++++|+|+++..+.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998776665 68899999863 3445555443 10 0 125789999999877765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-07 Score=80.46 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=137.8
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCe-
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKV- 110 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V- 110 (335)
++..+..++.|+.|..+|.++++.................. .. .+ ..+..++.+..+|..+++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v-~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DG-LV-LIHTSNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TT-EE-EEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CC-EE-EEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 45567778889999999999998776544322111111111 12 22 233458899999999998776655322111
Q ss_pred ----EEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcce--------EEECC--CCCEEEEEEcCCeEEEEE
Q psy16316 111 ----NSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--------AAFDP--EGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 111 ----~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~d~~v~iwd 176 (335)
...... +..++.++.++.+..+|..+++............. ....| .+..+.+++.++.+..+|
T Consensus 178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 111221 45788888899999999998887654432211000 00011 234556667788999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
..+.+. .-. ... .....+ ..++..+++++.++.+..+|..+++.......... ........ .+..|+
T Consensus 256 ~~tG~~--~w~--~~~---~~~~~~--~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~--~~~~l~ 322 (376)
T 3q7m_A 256 LRSGQI--MWK--REL---GSVNDF--IVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH--RLLTSPVL--YNGNLV 322 (376)
T ss_dssp TTTCCE--EEE--ECC---CCEEEE--EEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT--SCCCCCEE--ETTEEE
T ss_pred CCCCcE--Eee--ccC---CCCCCc--eEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC--CcccCCEE--ECCEEE
Confidence 876421 111 111 112222 23467788888899999999999987655432111 11111222 256888
Q ss_pred EEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
.++.+|.|+++|..++........
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEEec
Confidence 899999999999999987765543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-08 Score=93.53 Aligned_cols=267 Identities=15% Similarity=0.089 Sum_probs=159.2
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccccc-----------ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-----------VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..|..++.++.|.-+|.++|+.+......... ...+.. .... +..+..|+.+..+|..+++.+-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~--v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGK--VYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTE--EEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCE--EEEEcCCCEEEEEECCCCCEEe
Confidence 456667777899999999999887765432110 011111 1222 2333468999999999999887
Q ss_pred eecCC-C----CCeEEEEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecCCc-------------------
Q psy16316 102 YFPGH-T----KKVNSLCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSGSR------------------- 151 (335)
Q Consensus 102 ~~~~H-~----~~V~~~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~~~------------------- 151 (335)
.+..+ . ..+.+--.. .+..++.++. |+.|+.+|..+++....+......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 66644 1 122211111 1344555443 799999999999876555331110
Q ss_pred --------------ceEEECCCCCEEEEEEcCC-------------------eEEEEEccCCCCCceeeEEeccC-----
Q psy16316 152 --------------PIAAFDPEGLIFGVGVNSD-------------------TIKLYDVRSFDKGPFSNFKFAAE----- 193 (335)
Q Consensus 152 --------------~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~----- 193 (335)
...+++|++.++..+..++ .|..+|.++.+. .-.++....
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQETPGDNWDY 309 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEecCCCccccc
Confidence 2356778887777776553 488888876431 112221111
Q ss_pred -CCccceEEEEccCC---CEEEEEeCCCeEEEEECCCCeeeeeecccccC-------CC-----------------Cc--
Q psy16316 194 -KECDWTGIKFSADG---KYILISTNGSIIRTFDAYNGQCLQTLAGFLNN-------KG-----------------CP-- 243 (335)
Q Consensus 194 -~~~~~~~~~~s~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-------~~-----------------~v-- 243 (335)
......-+....+| ..++.++.++.++++|..+|+.+..+...... .. ++
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 01111123334467 67888899999999999999886554311000 00 00
Q ss_pred ------eEEEEcCCCcEEEEEeC-------------------------------------------CCcEEEEECCCCee
Q psy16316 244 ------LEASFTPDSKYVISGST-------------------------------------------DGRIHIWNAEKGFK 274 (335)
Q Consensus 244 ------~~~~~sp~~~~l~tgs~-------------------------------------------dg~v~iwd~~~~~~ 274 (335)
..++|+|+..++.++.. .|.|..||..+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 14689999888777543 27899999999987
Q ss_pred EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 275 VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 275 ~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
....+ +..+++...+.+.+.++..++ +.++.|
T Consensus 470 ~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 470 AWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp EEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred EeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 77664 334455556666776666665 344444
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-06 Score=76.00 Aligned_cols=239 Identities=11% Similarity=0.030 Sum_probs=144.3
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec--------------------ccccceEEEEecCCCeeEEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS--------------------KKYGVDLIRFTHAKQAAIHA 81 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 81 (335)
....++.|+++|.++.++..++.|..||.+++... .+.. ....+..+++.+.....+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567889999997888888999999998765432 1110 01234556666533334444
Q ss_pred ecCCCCeEEEEEcCCCceEeee----cCC-CCCeEEEEECC-CCCEEEEeeC-----------------CCcEEEeecCC
Q psy16316 82 STKIDDTVRYLSLHDNKYIRYF----PGH-TKKVNSLCLSP-IDDTFISGSY-----------------DKTVRLWDLRS 138 (335)
Q Consensus 82 ~~~~d~~i~~~~~~~~~~~~~~----~~H-~~~V~~~~~~~-~~~~l~s~s~-----------------D~~i~vWd~~~ 138 (335)
.. .+.+..+|..++.. +.+ .+. ....+.+++.+ +|+..++-.. ++.|..+|..+
T Consensus 98 d~--~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 98 DC--YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp ET--TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EC--CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 32 24477777765432 222 111 23478899999 8987776532 36788888776
Q ss_pred CCceeEEEecCCcceEEECCCCCE-EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC--
Q psy16316 139 PNCQGIMHVSGSRPIAAFDPEGLI-FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-- 215 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-- 215 (335)
++............-++++++++. +++-+..+.|..|++..........+.. ... ...++++++|++.++...
T Consensus 175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEET
T ss_pred CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcc
Confidence 654332222222345789999884 4554566899999987432222222221 112 467999999987666544
Q ss_pred --------CCeEEEEECCCCeeeeeecccccC-CCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 216 --------GSIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 216 --------~~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.+.|..+|.. ++.+..+....+. ...+..+++ .+++++++...++.|.++++.
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 3568888874 6666555432211 234555666 467777777778889999875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-07 Score=76.87 Aligned_cols=213 Identities=10% Similarity=0.046 Sum_probs=127.0
Q ss_pred cccceeeeccCCc--cEEEEEECCCCCEEEEecC--CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 10 SYKVAKLFRENTD--KITSIDYSADGLLLISCSE--DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 10 ~~~~~~~~~~h~~--~V~~v~~s~~g~~lasgs~--Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.+++.+++ .|.. ....+.|+++|.+.++.+. ++.|++.|+++++....+....
T Consensus 8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---------------------- 64 (266)
T 2iwa_A 8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---------------------- 64 (266)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT----------------------
T ss_pred CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC----------------------
Confidence 45666777 4543 4689999999876666554 6799999998887665532110
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+ .....+++.. +...++.-.++.+.++|..+.+....+...... -..+.+++..+.+
T Consensus 65 --------------------~-~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-g~glt~Dg~~l~v 121 (266)
T 2iwa_A 65 --------------------S-YFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-GWGLATDGKILYG 121 (266)
T ss_dssp --------------------T-CCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS-CCEEEECSSSEEE
T ss_pred --------------------C-cceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC-eEEEEECCCEEEE
Confidence 0 0011233322 223334445778888888777666555443011 1234455554444
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEecc--CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-c-----
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAA--EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-L----- 237 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~----- 237 (335)
+..++++.++|..+... ........ ......+.+.+. ++...+....++.|.+.|+.+++.+.++... .
T Consensus 122 s~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 122 SDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI 198 (266)
T ss_dssp ECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH
T ss_pred ECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 44577888888766331 11111111 111124567777 6654444445789999999999988877531 0
Q ss_pred ----cCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 238 ----NNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 238 ----~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
.....+..++|+|+++ +++|+....+|..-++.+
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 0112457899999875 677777888888888643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-07 Score=89.80 Aligned_cols=264 Identities=13% Similarity=0.099 Sum_probs=154.6
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccccc----------c-eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----------V-DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..++.++.++.|.-+|.++|+.+......... + ..+.. ... .+..+..|+.+..+|..+++.+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCCEee
Confidence 556777788999999999999987765432110 0 00111 122 23334468999999999998876
Q ss_pred eecC--CCCCeEEEEECC---CCCEEEEee-----CCCcEEEeecCCCCceeEEEecC----------------------
Q psy16316 102 YFPG--HTKKVNSLCLSP---IDDTFISGS-----YDKTVRLWDLRSPNCQGIMHVSG---------------------- 149 (335)
Q Consensus 102 ~~~~--H~~~V~~~~~~~---~~~~l~s~s-----~D~~i~vWd~~~~~~~~~~~~~~---------------------- 149 (335)
.+.. +......+...| ++..++..+ .|+.|+.||.++++....+....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 5543 211111111122 343444332 37999999999998765543210
Q ss_pred ----------CcceEEECCCCCEEEEEEcCC-------------------eEEEEEccCCCCCceeeEEeccC------C
Q psy16316 150 ----------SRPIAAFDPEGLIFGVGVNSD-------------------TIKLYDVRSFDKGPFSNFKFAAE------K 194 (335)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~------~ 194 (335)
......++|+..++..++.++ .|..+|..+.+. .-.++.... .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY--VWHYQTTPGDAWDYTA 303 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--EEEEESSTTCCSCCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--eEeeecCCcccccccC
Confidence 012356788888888887665 388999886432 111221100 0
Q ss_pred CccceEEEEccCCC---EEEEEeCCCeEEEEECCCCeeeeeecccc-------------------------cCCC-----
Q psy16316 195 ECDWTGIKFSADGK---YILISTNGSIIRTFDAYNGQCLQTLAGFL-------------------------NNKG----- 241 (335)
Q Consensus 195 ~~~~~~~~~s~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------------------~~~~----- 241 (335)
.....-.....+|+ .++.++.++.++++|..+|+.+....-.. ....
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 01111112223554 68888899999999999998763321000 0000
Q ss_pred ------CceEEEEcCCCcEEEEEeC---------------------------------------------CCcEEEEECC
Q psy16316 242 ------CPLEASFTPDSKYVISGST---------------------------------------------DGRIHIWNAE 270 (335)
Q Consensus 242 ------~v~~~~~sp~~~~l~tgs~---------------------------------------------dg~v~iwd~~ 270 (335)
.-..++|+|+..++.+++. +|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 0012689998887776532 3779999999
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+++.....+. ..++..-.+...+.+++.++.+
T Consensus 464 tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~d 495 (689)
T 1yiq_A 464 KQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSAD 495 (689)
T ss_dssp TTEEEEEEEE--SSSCCCCEEEETTTEEEEECTT
T ss_pred CCCeEeEccC--CCCccCccceECCCEEEEECCC
Confidence 9987776643 2334444666677777777543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-07 Score=75.85 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=136.2
Q ss_pred eEeeecCCCC--CeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEEecCCcc--eEEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFPGHTK--KVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMHVSGSRP--IAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~v 172 (335)
.+.+++ |.. ....+.|++++.+.++.+. +++|++.|+.+++....+......- .+++. ++.++++...++.+
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEE
Confidence 445554 443 3579999998766666553 6899999999998877665433222 22333 23566666778999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc--cCCCCceEEEEcC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL--NNKGCPLEASFTP 250 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~sp 250 (335)
.++|..+.+ ....+... .. .+..+++|+..++++..++.|.++|..+.+..+.+..-. .....+..+.|.
T Consensus 89 ~viD~~t~~--v~~~i~~g-~~----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 89 FIYDRRTLS--NIKNFTHQ-MK----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EEEETTTTE--EEEEEECC-SS----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECCCCc--EEEEEECC-CC----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 999987642 22233222 11 134577788888888778899999999998877775321 122235577887
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCC----------C--CCCeEEEEeCCCCcE-EEeeeceeEEecccccc
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDAD----------H--PSPVQTIQFNPKFNM-MASACTNLAFWIPTYLS 314 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~----------h--~~~v~~v~~sp~~~~-~~s~~~~~~~w~~~~~~ 314 (335)
++..++..-.++.|.+-|..++.....++.. + ....+.++|+|+++. ++++...-++++.++..
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 7777777767889999999999877776532 1 134589999999865 45554444555554433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-07 Score=83.21 Aligned_cols=213 Identities=9% Similarity=-0.134 Sum_probs=130.1
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEee----------CCCcEEEeecCCCCceeEEEec--------C
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS----------YDKTVRLWDLRSPNCQGIMHVS--------G 149 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~i~vWd~~~~~~~~~~~~~--------~ 149 (335)
++.++|..+++.+..+.....+ .+.++|+++.+..+. .++.|.+||+.+.+....+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999988755556 799999998887775 4789999999999888776554 1
Q ss_pred CcceEEECCCCCEEEEEEc--CCeEEE--EEccCCCCCceeeEEeccC----CCccceEEEE------------------
Q psy16316 150 SRPIAAFDPEGLIFGVGVN--SDTIKL--YDVRSFDKGPFSNFKFAAE----KECDWTGIKF------------------ 203 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~--d~~v~i--wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------ 203 (335)
.-..+.++|+|+++.++.. ++.+.+ +|+.+ ...+..... ....-.-+++
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 2346789999988887763 467888 88754 011100000 0000000111
Q ss_pred -------------------ccCCCEEEEEeCCCeEEEEECCCCe--eeeeeccc-------ccCCCCceEEEEcCCCcEE
Q psy16316 204 -------------------SADGKYILISTNGSIIRTFDAYNGQ--CLQTLAGF-------LNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 204 -------------------s~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~-------~~~~~~v~~~~~sp~~~~l 255 (335)
++++..++..+. +.+.+.|..+.. ....+.-. .........++|+||++.+
T Consensus 200 ~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred CeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 333333343334 667777765432 11211100 0000011126899999877
Q ss_pred EEEeC---------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee---ceeEEecc
Q psy16316 256 ISGST---------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC---TNLAFWIP 310 (335)
Q Consensus 256 ~tgs~---------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~---~~~~~w~~ 310 (335)
..+.. +..+.++|..+.+.+..++.+ .....++|+|+++ ++++.. +++.++.+
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred EEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 65432 235679999998877766543 2567999999997 344443 45666654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-06 Score=77.34 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=136.9
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeeccc---------ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKK---------YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 102 (335)
++..+..++.++.|..+|.++++......... ..+.. .........++ +..++.+..+|..+++.+-.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v--~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYI--GSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEE--EETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEE--EcCCCEEEEEECCCCCEEEE
Confidence 35677788889999999999998776544321 11111 11112222222 33578999999999987765
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc------ceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR------PIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
++............ +..++.++.++.|..+|..+++........... ..... .+..+.++..++.+..+|
T Consensus 129 ~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 129 TKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEE
T ss_pred EeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEE
Confidence 54432222122222 457888889999999999998876554332211 11111 134566677888999999
Q ss_pred ccCCCCCceeeEEeccC-CCc------cc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 177 VRSFDKGPFSNFKFAAE-KEC------DW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~------~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
..+.+. .-....... ... .+ ..... .+..+++++.++.+..+|..+++....... .....+..
T Consensus 205 ~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~ 275 (376)
T 3q7m_A 205 MEQGQM--IWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL-----GSVNDFIV 275 (376)
T ss_dssp TTTCCE--EEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC-----CCEEEEEE
T ss_pred CCCCcE--EEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC-----CCCCCceE
Confidence 875321 111111100 000 00 00111 245677778888999999999987654421 11222333
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
++..+..++.++.|..+|..++.......
T Consensus 276 --~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 276 --DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp --ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred --ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 46678888889999999999998776654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-07 Score=75.04 Aligned_cols=194 Identities=12% Similarity=0.177 Sum_probs=129.1
Q ss_pred eEeeecCCCC--CeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEEcCCeEE
Q psy16316 99 YIRYFPGHTK--KVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGVNSDTIK 173 (335)
Q Consensus 99 ~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~ 173 (335)
.++.++ |.. ....+.|+ ++.+..|.+.+| .|+..|+.+++...........-...+.+. +.++.....++.+.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 455564 443 34788888 577778888776 999999999988776655433211112222 35556666789999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc--cCCCCceEEEEcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL--NNKGCPLEASFTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~sp~ 251 (335)
+||..+.+ ....+.... .+..+.+++..|+++..+..|.++|..+.+..+++.... .....+..+.|. +
T Consensus 111 v~D~~t~~--~~~ti~~~~------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 111 VWNIRNLR--QVRSFNYDG------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp EEETTTCC--EEEEEECSS------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEECccCc--EEEEEECCC------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 99998743 233333221 224455788888888777889999999998887775422 112233456665 7
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCC---------C--CCCeEEEEeCCCCcEEEeeec
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDAD---------H--PSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~---------h--~~~v~~v~~sp~~~~~~s~~~ 303 (335)
|+.+|..-.+..|.+.|..++.....++.. + ..--+.+||+|+++.|..+++
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 777776667889999999999887776532 1 124588999998766555543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-07 Score=74.70 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=127.9
Q ss_pred cccceeeeccCCcc--EEEEEECCCCCEEEEecCCC--eEEEEEccCCcceeeeecccccc-eEEEEecCCCeeEEeecC
Q psy16316 10 SYKVAKLFRENTDK--ITSIDYSADGLLLISCSEDD--QIVIYDCELGTNKRTVFSKKYGV-DLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 10 ~~~~~~~~~~h~~~--V~~v~~s~~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (335)
.|++.+.| .|... ...+.|+ ++.++.|.+.+| .|+++|+++++..+.+....... ..++. .++. +....-
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~-ly~ltw 104 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDK-IVGLTW 104 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTE-EEEEES
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCE-EEEEEe
Confidence 47777888 55444 5889999 788888888876 99999999999887764432111 11222 2333 344455
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-Ccc-----eEEECC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRP-----IAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-----~~~~~~ 158 (335)
.++.+.++|..+.+.+..++--... ..++ +++..|+.+..++.|.++|..+.+....+.... ..+ -+.+.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred eCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 6899999999999999888642222 2333 456666665568889999999888766554421 111 13333
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEec--c-------CCCccceEEEEccCCCEEEEEeC
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA--A-------EKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
+|.+++....++.|.+.|..+.. ....+... . ......++++++|+++.|++++.
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~--V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGK--VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCB--EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEEccCCeEEEEECCCCc--EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 67788877788899999987643 22222221 0 11224589999999888877653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-07 Score=86.23 Aligned_cols=285 Identities=10% Similarity=0.054 Sum_probs=152.5
Q ss_pred EEEECC-CCCEEEEecCCC-----------eEEEEEccCCcceee--eec-ccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 26 SIDYSA-DGLLLISCSEDD-----------QIVIYDCELGTNKRT--VFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 26 ~v~~s~-~g~~lasgs~Dg-----------~i~lwd~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+++.+ +|++++.||.+. .+.+||..+++.... ... ........++..++ ..++..+..+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence 455666 899999887653 688999988764321 111 11112223443333 23333443566899
Q ss_pred EEEcCCCceEeeecCCCCC-eEEEEECCCCCEEEEee-CC-----CcEEEeecCCCCceeEE-----EecCCcceEEECC
Q psy16316 91 YLSLHDNKYIRYFPGHTKK-VNSLCLSPIDDTFISGS-YD-----KTVRLWDLRSPNCQGIM-----HVSGSRPIAAFDP 158 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~-V~~~~~~~~~~~l~s~s-~D-----~~i~vWd~~~~~~~~~~-----~~~~~~~~~~~~~ 158 (335)
+||..+++-...-..+... -.++...+++++++.|+ .+ ..+.+||..+......- ..........+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9999877544432222222 13456667889999988 45 57899999876533210 0000000012234
Q ss_pred CCCEEEEEEcC---------CeEEEEEccCCCCCceeeEEeccC------CCccceEEEEc-cCCCEEEEEeCCC-----
Q psy16316 159 EGLIFGVGVNS---------DTIKLYDVRSFDKGPFSNFKFAAE------KECDWTGIKFS-ADGKYILISTNGS----- 217 (335)
Q Consensus 159 ~~~~~~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~s-~~~~~l~~~~~~~----- 217 (335)
++.+++.|+.+ ..+..||..... .......... ....-.++.+. .+++.+++|+.+.
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG--DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTC--EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcc--eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 55555666544 356778876421 1111111100 00111234443 3666777765322
Q ss_pred ------eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----------CcEEEEECCCCeeEEEeCC
Q psy16316 218 ------IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----------GRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 218 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----------g~v~iwd~~~~~~~~~~~~ 280 (335)
.+.+||..+.+..............-..++..|++++++.|+.+ ..+.+||..+..=...-..
T Consensus 427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~ 506 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506 (656)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence 67788887765543321111111222345677899999999865 4689999876532211111
Q ss_pred CCC-CCeEEEEeCCCCcEEEeeec----------eeEEeccccc
Q psy16316 281 DHP-SPVQTIQFNPKFNMMASACT----------NLAFWIPTYL 313 (335)
Q Consensus 281 ~h~-~~v~~v~~sp~~~~~~s~~~----------~~~~w~~~~~ 313 (335)
.++ ..-....+.|++.+++.|+. ++.+|.+...
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Ppyl 550 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL 550 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred CCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeChhh
Confidence 111 12234456799999999874 3567777655
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-07 Score=78.56 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=151.2
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.+...+.++...++|.+.+ ++.+ +..+|. +++.................. .. .+.+ +..++.+..+|.. ++
T Consensus 57 ~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~-~l~v-~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 57 SGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--ED-ILYV-TSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TT-EEEE-ECTTSEEEEECTT-SC
T ss_pred cCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CC-EEEE-EecCCEEEEEcCC-CC
Confidence 3445567787888886544 4444 888886 555433322222112222222 22 2222 3357888899988 76
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
....+..+...+.++...+++. ++.++.++.|..+|.. ++........ ........++++.+++.. +.+..+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d- 201 (330)
T 3hxj_A 128 EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN- 201 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-
T ss_pred EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-
Confidence 6665655556667777777666 5567788999999988 6554444332 223345566777766544 7788888
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
.+. ....... .....+.++..++++.. .+++.++.+..+|. +++.+..+... ...+..+.+.+++ .|..
T Consensus 202 ~~g--~~~~~~~---~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g-~l~v 270 (330)
T 3hxj_A 202 PDG--TEKWNFY---AGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG---KRIESSPVIGNTD-TIYF 270 (330)
T ss_dssp TTS--CEEEEEC---CSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS---SCCCSCCEECTTS-CEEE
T ss_pred CCC--cEEEEEc---cCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC---CCccccceEcCCC-eEEE
Confidence 332 1111111 11233556788888765 45556677777774 45544444321 1222335566565 5666
Q ss_pred EeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEe
Q psy16316 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFW 308 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w 308 (335)
++.+|.|..+|. ++........ ....+.++...+++.+.+.+. +.+.+.
T Consensus 271 ~t~~ggl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKWNFET-GSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp ECTTCEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred ecCCCCEEEECC-CCcEEEEEEc-CCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 778888999996 6665554433 345667778878888766553 444444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-06 Score=82.37 Aligned_cols=262 Identities=14% Similarity=0.168 Sum_probs=158.5
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccc----ccceE-EEEecCCCeeEEeecC----CCCeEEEEEcCCCceEeee
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKK----YGVDL-IRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~~~ 103 (335)
+..++.++.|+.|..+|.++|+.+....... ..+.. ... .....++.... .++.+..+|..+++.+-.+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5577888899999999999999877654321 11110 011 12222322222 2588999999999887655
Q ss_pred cC---CC----------------------------CCeEEEEECCCCCEEEEeeCCC-------------------cEEE
Q psy16316 104 PG---HT----------------------------KKVNSLCLSPIDDTFISGSYDK-------------------TVRL 133 (335)
Q Consensus 104 ~~---H~----------------------------~~V~~~~~~~~~~~l~s~s~D~-------------------~i~v 133 (335)
.. .. ....++++.|+..++..++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 31 10 1112467888878888887766 4999
Q ss_pred eecCCCCceeEEEecCC--------cce--EEECCCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEecc--------
Q psy16316 134 WDLRSPNCQGIMHVSGS--------RPI--AAFDPEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA-------- 192 (335)
Q Consensus 134 Wd~~~~~~~~~~~~~~~--------~~~--~~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-------- 192 (335)
+|..+++....++.... .+. ..+..+|+ .++.+..++.+.++|..+.+. .....+..
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL--ISAEKFGKVTWAEKVD 352 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCCSEEEEC
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE--eccccccccccccccc
Confidence 99999987765543210 111 12223554 577888899999999776431 10000000
Q ss_pred -------------------------CCCccceEEEEccCCCEEEEEe---------------------------------
Q psy16316 193 -------------------------EKECDWTGIKFSADGKYILIST--------------------------------- 214 (335)
Q Consensus 193 -------------------------~~~~~~~~~~~s~~~~~l~~~~--------------------------------- 214 (335)
.....+..++++|+...+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0011234578899887766532
Q ss_pred ---CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 215 ---NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 215 ---~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
.++.|.-||+.+++.+-+..... ......+...+.+++.|+.|+.++.||..++..+..+..+....-.-+.+
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 12679999999998776554321 11223455567889999999999999999998887665432211122344
Q ss_pred CCCCc-EEEeee
Q psy16316 292 NPKFN-MMASAC 302 (335)
Q Consensus 292 sp~~~-~~~s~~ 302 (335)
..+|+ +++.++
T Consensus 509 ~~~G~~yva~~~ 520 (668)
T 1kv9_A 509 ELAGRQYVAIMA 520 (668)
T ss_dssp EETTEEEEEEEE
T ss_pred EECCEEEEEEEe
Confidence 45665 444444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-06 Score=73.03 Aligned_cols=191 Identities=14% Similarity=0.095 Sum_probs=129.7
Q ss_pred ceEeeecCCC--CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcce--EEECCCCCEEEEEEcCCeEE
Q psy16316 98 KYIRYFPGHT--KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 98 ~~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~ 173 (335)
+.++.++ |. .....+.|+. +.+..+.+.++.|+..|+.+++..... .....-. +++. .+.++.....++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEE
Confidence 3455563 43 3357888874 678888889999999999999887766 5443211 3343 345666677889999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc--CCCCceEEEEcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp~ 251 (335)
+||..+.+ ....+... . .+..+.+++..|+++..++.|.++|..+.+..+++..... ....+..+.|. +
T Consensus 120 V~D~~Tl~--~~~ti~~~--~----eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 120 TWSGMPPQ--RERTTRYS--G----EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEETTTTE--EEEEEECS--S----CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEECCcCc--EEEEEeCC--C----ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 99997643 22333322 1 1234557788898888888999999999988887753221 22234556666 7
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------CCCCeEEEEeCCCCc-EEEee
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNPKFN-MMASA 301 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------h~~~v~~v~~sp~~~-~~~s~ 301 (335)
|+.+|..-.+..|.+-|..++..+..++.. -..-.+.+||+|++. ++++|
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 777766667889999999999877766432 123568899999765 45555
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-06 Score=77.28 Aligned_cols=260 Identities=10% Similarity=0.044 Sum_probs=153.9
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccc----cce-EEEEecCCCeeEEeecC-----CCCeEEEEEcCCCceEee
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKY----GVD-LIRFTHAKQAAIHASTK-----IDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~ 102 (335)
+..++.++.|+.+..+|.++|+.+........ .+. ..... .. .+++... .++.+..+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 55677888899999999999988765543221 111 00111 22 2333332 278999999999987755
Q ss_pred ecCCCCC-------------------------------------e-EEEEECCCCCEEEEeeC------------C----
Q psy16316 103 FPGHTKK-------------------------------------V-NSLCLSPIDDTFISGSY------------D---- 128 (335)
Q Consensus 103 ~~~H~~~-------------------------------------V-~~~~~~~~~~~l~s~s~------------D---- 128 (335)
+..-... + ..+++.+....+..++. |
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 4321110 0 13456666555555542 2
Q ss_pred CcEEEeecCCCCceeEEEecC---------CcceE-EECCCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEecc---
Q psy16316 129 KTVRLWDLRSPNCQGIMHVSG---------SRPIA-AFDPEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA--- 192 (335)
Q Consensus 129 ~~i~vWd~~~~~~~~~~~~~~---------~~~~~-~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--- 192 (335)
+.|..+|..+++....+.... ..+++ ...++|+ +++.+..++.+..+|..+.+. ........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL--IVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE--EeeecccCCcc
Confidence 369999999988765554321 11222 2223563 566788888999999765421 11111100
Q ss_pred ---------------------------------CCCccceEEEEccCCCEEEEEe-------------------------
Q psy16316 193 ---------------------------------EKECDWTGIKFSADGKYILIST------------------------- 214 (335)
Q Consensus 193 ---------------------------------~~~~~~~~~~~s~~~~~l~~~~------------------------- 214 (335)
.....+..++++|+...+++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 0011234578999888877754
Q ss_pred ------------CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 215 ------------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 215 ------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
.++.+..||+.+++..-++.... .+....+...+..+..++.|+.|+.||..+++++..+..+.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 24679999999998766554211 11122233345677779999999999999999887765443
Q ss_pred CCCeEEEEeCCCCcEEEee
Q psy16316 283 PSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~~~s~ 301 (335)
...-.-+.+.+++.+++..
T Consensus 506 ~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCCSCCEEEEETTEEEEEE
T ss_pred CcEeeeEEEEECCEEEEEE
Confidence 3222234466777655543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-06 Score=72.36 Aligned_cols=194 Identities=10% Similarity=0.042 Sum_probs=125.8
Q ss_pred cccceeeeccCC--ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 10 SYKVAKLFRENT--DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 10 ~~~~~~~~~~h~--~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
..++.+.| .|. .....+.|+ ++.+..+.+.+|.|+++|+++++..+.+ ... .....-....++.. ....-.++
T Consensus 42 ~~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~L-y~ltw~~~ 116 (268)
T 3nok_A 42 VAHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERL-YQLTWTEG 116 (268)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCE-EEEESSSC
T ss_pred ceEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEE-EEEEccCC
Confidence 34566677 444 345789997 4678889999999999999999988876 222 22121122233433 34455689
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-Ccc-----eEEECCCCC
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRP-----IAAFDPEGL 161 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-----~~~~~~~~~ 161 (335)
.+.++|..+.+.+.+++.-.. =+.++ +++..|+.+..+++|.++|..+.+....+.... ..+ -+.+. +|.
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV 192 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence 999999999999988874222 23444 456666666679999999999888766554321 111 12232 677
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEec----------cCCCccceEEEEccCCCEEEEEe
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFA----------AEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
+++....++.|.+.|..+.. ....+... .......++++++|++..|++++
T Consensus 193 lyanvw~s~~I~vIDp~TG~--V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGT--VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEETTCSEEEEECTTTCB--EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCc--EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 88777788899999987643 22222221 11123458999999877666654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-05 Score=67.22 Aligned_cols=222 Identities=8% Similarity=0.025 Sum_probs=131.5
Q ss_pred CccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 21 TDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 21 ~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
...+..+.|++++. ++++-..++.|..+|.+.+.....+.........+++.+.....+. +....+.|.+++++....
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv-~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFW-TDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEE-EETTTTEEEEEETTSCSC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEE-EECCCCEEEEEEcCCCCE
Confidence 34577999999655 5556667889999998765433222222235667777766544444 334567899999875433
Q ss_pred EeeecCCCCCeEEEEECCCCCE-EEEeeC--CCcEEEeecCCCCceeEEEec-CCcceEEECCCC-CEEEEEEcCCeEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDT-FISGSY--DKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEG-LIFGVGVNSDTIKL 174 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~-l~s~s~--D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~d~~v~i 174 (335)
.............++++|++.. .++-.. .+.|..+++............ .....+++++++ .++++....+.|..
T Consensus 114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 2223322345789999996554 444433 468888887643322111111 112346788865 45566666789999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
+|+.... ..... ... ....+++.. +..++.+. .++.|..+|..+++.++++... ....+..+++.|++.
T Consensus 194 ~~~~g~~---~~~~~--~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g--~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 194 LNPAQPG---RRKVL--EGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH--KQTRLYGITIALSQC 263 (267)
T ss_dssp EETTEEE---EEEEE--ECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCS--SCCCCCCEEEECSCC
T ss_pred EecCCCc---eEEEe--cCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccc--cccccceeeecCccC
Confidence 9986411 11111 111 122456554 55566555 4578999999999887776421 112356788888753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-07 Score=81.79 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=149.7
Q ss_pred CCCCEEEEec-CCCeEEEEEccCCcceeeeecc-cccceEEEE-e-cCCCeeEEee----------------cCCCCeEE
Q psy16316 31 ADGLLLISCS-EDDQIVIYDCELGTNKRTVFSK-KYGVDLIRF-T-HAKQAAIHAS----------------TKIDDTVR 90 (335)
Q Consensus 31 ~~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~----------------~~~d~~i~ 90 (335)
+||++|.... .+..|.+-|+++.++.+.+... ......+++ . ++....+.+. ...++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4888766554 5667999999999887744322 233555665 3 5555544432 13456889
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC--------------------------------------cEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--------------------------------------TVR 132 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--------------------------------------~i~ 132 (335)
++|.++.+....+.--. .-..++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988877665211 345778999999998888664 466
Q ss_pred EeecCC--CCc-eeEEEecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCC------CceeeEEeccCCCccceEEE
Q psy16316 133 LWDLRS--PNC-QGIMHVSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDK------GPFSNFKFAAEKECDWTGIK 202 (335)
Q Consensus 133 vWd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~ 202 (335)
+.|.++ ++. ...+........+.++|||+++.++. .+.+|.++|+.+... .+........+.-.....++
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 777766 333 33444444455678999999766654 678999999985310 00000111111112235789
Q ss_pred EccCCCEEEE-EeCCCeEEEEECCC----------Ceeeeeeccccc--CCCCceEEEEcCCCcEEEEEeCCC--cE---
Q psy16316 203 FSADGKYILI-STNGSIIRTFDAYN----------GQCLQTLAGFLN--NKGCPLEASFTPDSKYVISGSTDG--RI--- 264 (335)
Q Consensus 203 ~s~~~~~l~~-~~~~~~i~i~d~~~----------~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~tgs~dg--~v--- 264 (335)
|+|+| .+.+ .--++.|..||+.+ .+.+.++..+.. |........++|||++|++...-. ++
T Consensus 338 F~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~ 416 (595)
T 1fwx_A 338 FDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNV 416 (595)
T ss_dssp ECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCC
T ss_pred ECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccC
Confidence 99999 5554 45678899999876 444555543321 111112346789999998876522 23
Q ss_pred --------EEEECCCCe
Q psy16316 265 --------HIWNAEKGF 273 (335)
Q Consensus 265 --------~iwd~~~~~ 273 (335)
.++|++.+.
T Consensus 417 gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 417 GPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSCCEEEEEEECSSSS
T ss_pred CCCCCCcceEEEcCCCc
Confidence 788885443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=7e-06 Score=67.64 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=127.9
Q ss_pred eEeeecCCC--CCeEEEEECCCCCEEEEeeCC--CcEEEeecCCCCceeEEEecCCcce--EEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFPGHT--KKVNSLCLSPIDDTFISGSYD--KTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D--~~i~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v 172 (335)
.++.++ |. .....+.|++ +.+..|.+.+ ..|+..|+.+++...........-. +++. .+.++.....++.+
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence 345553 54 4466888987 6677777775 4999999999988776655443211 2222 34566667788999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc--CCCCceEEEEcC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTP 250 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp 250 (335)
.+||..+++ ....+.... .+..+.+++..|+++..++.|.++|..+.+..+++..... ....+..+.+.
T Consensus 88 ~v~D~~tl~--~~~ti~~~~------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 88 FVYDLATLT--PRARFRYPG------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp EEEETTTTE--EEEEEECSS------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECCcCc--EEEEEeCCC------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 999997643 223333221 2244557788888888888999999999988877753221 12234455554
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------CCCCeEEEEeCCCCcEEEeeec
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+|+.+|..-.+..|.+.|..++..+..++.. -..-.+.+|++|++..|...++
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6777766666789999999999887776522 1134688999998665544443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.9e-06 Score=67.30 Aligned_cols=194 Identities=16% Similarity=0.092 Sum_probs=125.3
Q ss_pred cccceeeeccCC--ccEEEEEECCCCCEEEEecCCC--eEEEEEccCCcceeeeecccccc-eEEEEecCCCeeEEeecC
Q psy16316 10 SYKVAKLFRENT--DKITSIDYSADGLLLISCSEDD--QIVIYDCELGTNKRTVFSKKYGV-DLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 10 ~~~~~~~~~~h~--~~V~~v~~s~~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (335)
.|++.+.| .|. .....+.|+. +.+..|.+.+| .|+.+|+++++..+.+....... ..++.. ++. +....-
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~-ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDR-LIQLTW 82 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTE-EEEEES
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCE-EEEEEe
Confidence 57778888 665 4477999987 67777877764 99999999999887664332211 122222 333 344455
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-Ccc-----eEEECC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRP-----IAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-----~~~~~~ 158 (335)
.++.+.++|..+.+.+.+++.-... +.++ +++..|+.+..++.|.++|..+.+....+.... ..+ -+.+ .
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-~ 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-V 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-E
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-e
Confidence 6899999999999999888743322 3444 455555555568899999999887766554321 111 1122 2
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEec----------cCCCccceEEEEccCCCEEEEEe
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA----------AEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
+|.+++....+..|.+.|..+.. ....+... .......++++++|++..|++++
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~--V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGK--VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCB--EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCC--EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 67777777778899999987643 12222211 01122458999999888777765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-05 Score=64.23 Aligned_cols=241 Identities=14% Similarity=0.078 Sum_probs=136.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC-eE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD-TV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i 89 (335)
.++...|... .....+.|+++|.++++-..++.|..||.+... .. ..........+++.+++. .+++....++ .+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v 97 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-HATVEGKVSGLAFTSNGD-LVATGWNADSIPV 97 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-EEECSSEEEEEEECTTSC-EEEEEECTTSCEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-EEeCCCCceeEEEcCCCc-EEEEeccCCcceE
Confidence 3444555443 457899999999988888788999999986532 22 222233466677777655 3444333222 46
Q ss_pred EEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE-EEe--------cCCcceEEECCC
Q psy16316 90 RYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI-MHV--------SGSRPIAAFDPE 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~--------~~~~~~~~~~~~ 159 (335)
..++..+++...... ........++..+.+..+++-..++.|.++|..++..... ... ........++++
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 566777766543222 1122334555555555566655688888888765321110 000 000111123667
Q ss_pred CC-EEEEEEcCCeEEEEEccCC-CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 160 GL-IFGVGVNSDTIKLYDVRSF-DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 160 ~~-~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+. ++++-...+.|..+|+... .......+... ....+++++++|++.++....+.|..++.. ++... +....
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~ 251 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE 251 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc
Confidence 65 5555666789999998641 11111111111 123568999999877776667889999975 54322 21111
Q ss_pred cCCCCceEEEEc---CCCcEEEEEeCC
Q psy16316 238 NNKGCPLEASFT---PDSKYVISGSTD 261 (335)
Q Consensus 238 ~~~~~v~~~~~s---p~~~~l~tgs~d 261 (335)
.....+.+++|. |+++.|...+..
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccCCceEEEEecccCCCCEEEEECCC
Confidence 223457889998 887665555443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-05 Score=74.10 Aligned_cols=257 Identities=9% Similarity=0.049 Sum_probs=151.8
Q ss_pred EEEecCCCeEEEEEccCCcceeeeecccc----cce-EEEEecCCCeeEEeecC-----CCCeEEEEEcCCCceEeeecC
Q psy16316 36 LISCSEDDQIVIYDCELGTNKRTVFSKKY----GVD-LIRFTHAKQAAIHASTK-----IDDTVRYLSLHDNKYIRYFPG 105 (335)
Q Consensus 36 lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~ 105 (335)
++.++.|+.+.-+|.++|+.+........ .+. ..... .. .+++.+. .++.++-+|..+++.+-.+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 77888999999999999988765432221 111 11111 12 2333322 378999999999987654432
Q ss_pred CCCC-------------------------------------eE-EEEECCCCCEEEEeeCC----------------CcE
Q psy16316 106 HTKK-------------------------------------VN-SLCLSPIDDTFISGSYD----------------KTV 131 (335)
Q Consensus 106 H~~~-------------------------------------V~-~~~~~~~~~~l~s~s~D----------------~~i 131 (335)
.... ++ ..++.+...++..++.+ ++|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1110 11 34555666677666554 489
Q ss_pred EEeecCCCCceeEEEecCC---------cceE-EEC-CCC---CEEEEEEcCCeEEEEEccCCCCCceeeEEecc-----
Q psy16316 132 RLWDLRSPNCQGIMHVSGS---------RPIA-AFD-PEG---LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----- 192 (335)
Q Consensus 132 ~vWd~~~~~~~~~~~~~~~---------~~~~-~~~-~~~---~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----- 192 (335)
..+|..+++..-.++.... .+++ ... .+| ..++.++.++.+.++|.++.+. ........
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL--VSANKLDDTVNVF 358 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCCSE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE--eecccccCCcccc
Confidence 9999999987755543221 1222 221 456 4677788899999999876431 11111100
Q ss_pred -------------------------------CCCccceEEEEccCCCEEEEEe---------------------------
Q psy16316 193 -------------------------------EKECDWTGIKFSADGKYILIST--------------------------- 214 (335)
Q Consensus 193 -------------------------------~~~~~~~~~~~s~~~~~l~~~~--------------------------- 214 (335)
.....+..++++|+...+++..
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 0012345678888877765532
Q ss_pred ------------CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 215 ------------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 215 ------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
..+.+.-||+.+++.+-+..... ....-.+...+.++..|+.|+.++.||..+|+++.......
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 23678889999988765543211 11111123346777789999999999999999887765433
Q ss_pred CCCeEEEEeCCCCcE-EEee
Q psy16316 283 PSPVQTIQFNPKFNM-MASA 301 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~-~~s~ 301 (335)
.....-+.+..+|++ ++..
T Consensus 515 g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 515 GAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CCCSCCEEEEETTEEEEEEE
T ss_pred CcEeccEEEEeCCEEEEEEE
Confidence 222233556667764 4443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.8e-05 Score=72.27 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=153.1
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccc----cc--eEEEEec--CCCeeEEeec-----CCCCeEEEEEcCCCce
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKY----GV--DLIRFTH--AKQAAIHAST-----KIDDTVRYLSLHDNKY 99 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~--~~~~~~~--~~~~~~~~~~-----~~d~~i~~~~~~~~~~ 99 (335)
+..++.++.|+.+.-.|.++|+.+........ .+ ..+.... .....+++.. ..++.+.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677788899999999999988765543221 11 1111111 0111233322 1368899999988887
Q ss_pred EeeecCCCC----------------------------------------Ce-EEEEECCCCCEEEEeeC-----------
Q psy16316 100 IRYFPGHTK----------------------------------------KV-NSLCLSPIDDTFISGSY----------- 127 (335)
Q Consensus 100 ~~~~~~H~~----------------------------------------~V-~~~~~~~~~~~l~s~s~----------- 127 (335)
+-..+.... .+ ...++.|...++..+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 654322100 00 13456666666655442
Q ss_pred ---------C----CcEEEeecCCCCceeEEEecC---------CcceEE-EC-CCCC---EEEEEEcCCeEEEEEccCC
Q psy16316 128 ---------D----KTVRLWDLRSPNCQGIMHVSG---------SRPIAA-FD-PEGL---IFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 128 ---------D----~~i~vWd~~~~~~~~~~~~~~---------~~~~~~-~~-~~~~---~~~~~~~d~~v~iwd~~~~ 180 (335)
| +.|..+|..+++..-.++... ..+++. .. .+|+ +++.++.++.+.++|..+.
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 3 689999999998776554321 112222 21 4563 6778889999999997653
Q ss_pred CCCceeeEEecc------------------------------------------CCCccceEEEEccCCCEEEEEe----
Q psy16316 181 DKGPFSNFKFAA------------------------------------------EKECDWTGIKFSADGKYILIST---- 214 (335)
Q Consensus 181 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~s~~~~~l~~~~---- 214 (335)
+. ........ .....+..++++|+...+++..
T Consensus 357 ~~--lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 357 KL--QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp CE--EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CE--ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 21 11111100 0001234578888776665543
Q ss_pred -----------------------------CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 215 -----------------------------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 215 -----------------------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
..+.|.-||+.+++.+-+......... -.....+.+++.|+.|+.++
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~----g~~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA----GVLATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS----CCEEETTTEEEEECTTSEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc----cceEeCCCEEEEECCCCcEE
Confidence 247799999999987655543211111 11223466788899999999
Q ss_pred EEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE-EEeee
Q psy16316 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM-MASAC 302 (335)
Q Consensus 266 iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~~s~~ 302 (335)
.||..+|+++............-+.|..+|++ ++..+
T Consensus 511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 99999999887765433222223667778864 44433
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00047 Score=67.38 Aligned_cols=277 Identities=10% Similarity=0.122 Sum_probs=165.4
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc-------cccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...|.++...++|.+.+.. .++-+.+||.++++........ ...+..+... ....+.+++. + .+.+++
T Consensus 214 ~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~g~lWigt~-~-Gl~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVAT-EGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD--SQNRLWIGTF-N-DLNIYH 288 (795)
T ss_dssp CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC--TTSCEEEEES-S-CEEEEE
T ss_pred CCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc--CCCCEEEEeC-C-hhheEc
Confidence 4668888888888766544 4445888998776543221111 1234444433 3333333332 3 688889
Q ss_pred cCCCceEeeecC-------CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-------cCCcceEEECCC
Q psy16316 94 LHDNKYIRYFPG-------HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPE 159 (335)
Q Consensus 94 ~~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~ 159 (335)
..+++....... ....|.++...++|+ |..|+.++-|..+|..+......... ...+..+..+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence 877765443221 235799999988775 66677778899998765443221111 112334556777
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEecc------CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA------EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
|++.+ |+.++-+..||..+. ....+.... -....+.++..+++++.|.+|+.++-+..||..+++... +
T Consensus 368 g~lWi-Gt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~ 442 (795)
T 4a2l_A 368 KNLWI-GTNDGGLNLYNPITQ---RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-F 442 (795)
T ss_dssp SCEEE-EESSSCEEEECTTTC---CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-E
T ss_pred CCEEE-EECCCCeEEEcCCCC---cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-e
Confidence 77654 666667888887542 122221110 012356788888889856667777779999988875432 2
Q ss_pred ccc--ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-----CCCCCCeEEEEeCCCCcEEEeeeceeE
Q psy16316 234 AGF--LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-----ADHPSPVQTIQFNPKFNMMASACTNLA 306 (335)
Q Consensus 234 ~~~--~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~~~s~~~~~~ 306 (335)
... ......+.++...++|.+.+... +| +.+||..++....... .-....|.++...++|.+.+...+.+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~ 520 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLS 520 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceE
Confidence 210 01234577888888887665544 44 9999987764332211 112367999999999988776655566
Q ss_pred Eecc
Q psy16316 307 FWIP 310 (335)
Q Consensus 307 ~w~~ 310 (335)
.|.+
T Consensus 521 ~~~~ 524 (795)
T 4a2l_A 521 VFKQ 524 (795)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-05 Score=66.97 Aligned_cols=216 Identities=10% Similarity=0.029 Sum_probs=129.3
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~ 112 (335)
+..+..++.++.+..+|.+ ++...........+..+....++ .+.+ +..++.+..+|.. ++....+......+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~v-gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYV-GSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEE-EcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 4456678888999999988 66554443333333333333322 2333 3356889999988 7776666655566777
Q ss_pred EEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec
Q psy16316 113 LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 113 ~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
+...+++...+.. +.|..+| .+++........ .....+..++++.+++ ++.++.+..+|... .....+...
T Consensus 182 ~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g---~~~~~~~~~ 253 (330)
T 3hxj_A 182 ASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINPDG---TEKWRFKTG 253 (330)
T ss_dssp CEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECTTS---CEEEEEECS
T ss_pred eEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECCCC---CEeEEeeCC
Confidence 8887777755544 7899999 555544333222 2234456777776655 55667777777422 222222211
Q ss_pred cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 192 ~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
......+.+.+++. |.+++.++.+..+|. +++....+.. ....+.++..++++.+ ..|+.+|.+++....
T Consensus 254 ---~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~---~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 254 ---KRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFET---GSWIIATPVIDENGTI-YFGTRNGKFYALFNL 323 (330)
T ss_dssp ---SCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEEC---SSCCCSCCEECTTCCE-EEECTTSCEEEEEC-
T ss_pred ---CCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEc---CCccccceEEcCCCEE-EEEcCCCeEEEEecc
Confidence 11123355666665 566777878999996 6665544432 1233445677777764 558889999988764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.2e-05 Score=61.68 Aligned_cols=206 Identities=10% Similarity=0.089 Sum_probs=127.2
Q ss_pred eecCCCCCeEEEEECCCCCEEEE-eeCCCcEEEeecCCCCceeEEEecC--CcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRSPNCQGIMHVSG--SRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s-~s~D~~i~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
.+.|-...+..++++|++..|++ ...++.|...|+. ++....+...+ ...-+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 35565678999999998776655 5678889999987 66665554443 33445677777766665566788888876
Q ss_pred CCCC-CceeeEEec---cCCCccceEEEEccCCCEEEEEeCCCeEEEEECC---CCeeeeeecc----cccCCCCceEEE
Q psy16316 179 SFDK-GPFSNFKFA---AEKECDWTGIKFSADGKYILISTNGSIIRTFDAY---NGQCLQTLAG----FLNNKGCPLEAS 247 (335)
Q Consensus 179 ~~~~-~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~---~~~~~~~~~~----~~~~~~~v~~~~ 247 (335)
.... ......... ...+..+.+++++|++..|.++.+..-..+|... ....+..+.. .......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5321 011222111 1234456799999999877777665444444433 1111222211 011233567899
Q ss_pred EcCCC-cEEEEEeCCCcEEEEECCCCeeEEEe--CCCC------CCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 248 FTPDS-KYVISGSTDGRIHIWNAEKGFKVCVL--DADH------PSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 248 ~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~--~~~h------~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
++|.. .+++.......+.++|.. +.....+ ..+. -.+-..++|.|+|++.+++-.| .+|..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence 99954 566666677888999975 4443333 2211 1245789999999988887777 55544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-05 Score=67.89 Aligned_cols=244 Identities=10% Similarity=0.049 Sum_probs=139.2
Q ss_pred ccEEEEEECCC--CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--CCe-EEEEEcCC
Q psy16316 22 DKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI--DDT-VRYLSLHD 96 (335)
Q Consensus 22 ~~V~~v~~s~~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~-i~~~~~~~ 96 (335)
.....++|+|+ +..|..+...+.|+.+|.+++.... +.........+++.+++. .+++.... +.. +...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999985 3334444333899999987765443 333334567788887766 33333211 111 22222222
Q ss_pred Cce-EeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCc-eeEEEecCC--cceEEECCCCC-EEEEEEcCC
Q psy16316 97 NKY-IRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNC-QGIMHVSGS--RPIAAFDPEGL-IFGVGVNSD 170 (335)
Q Consensus 97 ~~~-~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~~~~--~~~~~~~~~~~-~~~~~~~d~ 170 (335)
+.. ...+. .-.....++++| ++.+.++-..++.|+.+|..++.. ......... ...++++|+++ ++++-...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 223456788999 677777777788999999886665 222222211 12478999998 666666778
Q ss_pred eEEEEEccCCCCC--ceeeEEeccC------------CCccceEEEE---------ccCCCEEEEEeCCCeEEEEECCCC
Q psy16316 171 TIKLYDVRSFDKG--PFSNFKFAAE------------KECDWTGIKF---------SADGKYILISTNGSIIRTFDAYNG 227 (335)
Q Consensus 171 ~v~iwd~~~~~~~--~~~~~~~~~~------------~~~~~~~~~~---------s~~~~~l~~~~~~~~i~i~d~~~~ 227 (335)
.|..++....... ....+.-... .-....++++ .+++.+.++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 9999886531110 0011110000 0012356899 777777666667788999985 55
Q ss_pred eeeeeeccccc---------------CCCCceEEEEc-CCCcEEEEEeCCCcEEEEECC
Q psy16316 228 QCLQTLAGFLN---------------NKGCPLEASFT-PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 228 ~~~~~~~~~~~---------------~~~~v~~~~~s-p~~~~l~tgs~dg~v~iwd~~ 270 (335)
. +.++.+... .-..+..++++ +++.++++=..+.+|+.++++
T Consensus 375 ~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3 333332211 12346778888 677777776677788877754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00038 Score=61.08 Aligned_cols=246 Identities=11% Similarity=0.097 Sum_probs=145.6
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
+.+..+|....+++.++++- ...|+..+++..... .+.........++|.+.....+.+ ....+.|..+++.....
T Consensus 32 ~~d~~~C~~~~~~~~ll~~~--~~~I~~i~~~g~~~~-~~~~~~~~~~~l~~d~~~~~ly~~-D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 32 RPDRRSCKALGPEPVLLFAN--RIDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWS-DVTLDRILRANLNGSNV 107 (349)
T ss_dssp CTTSSCEEESSSCCEEEEEC--BSCEEEECTTSCCEE-EEECSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSC
T ss_pred CCCCCcccccccCceeEeec--ccceEEEeCCCCeeE-EeecCCCceEEEEEeccccEEEEE-eccCCceEEEecCCCCc
Confidence 34445677767755444443 355877887654432 222223345677777655544443 33467888888877654
Q ss_pred EeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECC-CCCEEEEEEcC-CeEEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDP-EGLIFGVGVNS-DTIKLY 175 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~d-~~v~iw 175 (335)
...+.........+++.+. +++.++-...+.|.+.++............ .....++++| ++.++.+-... +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 4444333345678889874 556677777889999998754433222111 1123467887 45566666555 788888
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
++..... .. .....-...++++++|++..|..+. ..+.|..+++........+.. ....+..+++ ..+..
T Consensus 188 ~~dG~~~---~~--~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~giav-~~~~l 258 (349)
T 3v64_C 188 SMDGSGR---RI--IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ---GLPHPFAITV-FEDSL 258 (349)
T ss_dssp ETTSCSC---EE--SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSSEEEEEE-ETTEE
T ss_pred eCCCCCc---EE--EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC---CCCCceEEEE-ECCEE
Confidence 8754211 11 1111122347899999887777665 456799999765332222211 2345677888 45667
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEe
Q psy16316 255 VISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
+++-...+.|...+..++.....+
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEe
Confidence 777777888999986666544444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-06 Score=79.28 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=111.1
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccc-----------eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV-----------DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..+..++.++.|.-+|.++|+.+.......... ..+... .. .+..+..|+.+..+|..+++.+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD--KVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC--EEEEEcCCCEEEEEECCCCCEee
Confidence 4566777788999999999998877653321100 011111 12 22334468999999999998876
Q ss_pred eecCCC----CCeEEEEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecC----------------------
Q psy16316 102 YFPGHT----KKVNSLCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSG---------------------- 149 (335)
Q Consensus 102 ~~~~H~----~~V~~~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~---------------------- 149 (335)
.++... ..+.+--.- .+..++.++. ++.|..+|..+++....+....
T Consensus 142 ~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 554321 111110000 1334544433 6899999999998776554210
Q ss_pred ----------CcceEEECCCCCEEEEEEcCC-------------------eEEEEEccCCCCCceeeEEeccC------C
Q psy16316 150 ----------SRPIAAFDPEGLIFGVGVNSD-------------------TIKLYDVRSFDKGPFSNFKFAAE------K 194 (335)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~------~ 194 (335)
.....+++++..++..++.++ .|.-+|.++.+. .-.++.... .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFTA 298 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCCC
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEeecCCCccccccC
Confidence 001246777777777776554 388888876431 111221100 0
Q ss_pred CccceEEEEccCCC---EEEEEeCCCeEEEEECCCCeeee
Q psy16316 195 ECDWTGIKFSADGK---YILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 195 ~~~~~~~~~s~~~~---~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
..+..-..+..+|+ .++.++.++.++++|..+|+.+.
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 01111122334665 67888899999999999998763
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00046 Score=61.41 Aligned_cols=242 Identities=10% Similarity=0.075 Sum_probs=142.5
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 103 (335)
-+|....+++.++++ ....|+..++....... +.........++|.+.....+.+ ....+.|..+++........+
T Consensus 79 ~~C~~~~~~~~l~~~--~~~~I~~i~~~~~~~~~-~~~~~~~~~gl~~d~~~~~ly~~-D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWS-DVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SCEEECSSCCEEEEE--CBSCEEEECTTSCCCEE-EECSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCEEEEE
T ss_pred CeECCccccceeEee--cCccceeeccCCCcEEE-EecCCCccEEEEEecCCCeEEEE-eCCCCcEEEEecCCCCcEEEE
Confidence 345555564433333 33578888887654333 22233346677777655544443 345678888888776544444
Q ss_pred cCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcC-CeEEEEEccC
Q psy16316 104 PGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNS-DTIKLYDVRS 179 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d-~~v~iwd~~~ 179 (335)
.........+++.+. +.+.++-...+.|.+.++............ .....++++|. +.++.+-... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 433345568888875 456677777889999998754433222211 11234677775 4555555555 6788888754
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
.. ...+ ....-...++++++|++..|..+. ..+.|..+++........+.. ....+..+++ ..+.++++-
T Consensus 235 ~~---~~~~--~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 235 SG---RRII--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ---GLPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp CS---CEEE--ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS---SCSSEEEEEE-ETTEEEEEE
T ss_pred CC---cEEE--EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC---CCCCceEEEE-ECCEEEEee
Confidence 21 1111 111122347899998877777664 456799999764332222221 2335677888 456677777
Q ss_pred eCCCcEEEEECCCCeeEEEe
Q psy16316 259 STDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 259 s~dg~v~iwd~~~~~~~~~~ 278 (335)
...+.|..++..++.....+
T Consensus 306 ~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 306 WHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp TTTTEEEEEETTTCCSCEEE
T ss_pred CCCCeEEEEECCCCcceEEE
Confidence 78889999997666554444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00012 Score=66.13 Aligned_cols=243 Identities=16% Similarity=0.137 Sum_probs=137.4
Q ss_pred cEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC---CCeEEEEEcCCCc
Q psy16316 23 KITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI---DDTVRYLSLHDNK 98 (335)
Q Consensus 23 ~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~ 98 (335)
....|+++| ++..|..+...+.|+.+|.+.+... .+.........+++.+++...+++.... ...+.+.+.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457889998 3444555544488999998776543 3333334466788887766455444321 1123333432 22
Q ss_pred eE--eeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEecC--CcceEEECCCCC-EEEEEEcCCeE
Q psy16316 99 YI--RYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPIAAFDPEGL-IFGVGVNSDTI 172 (335)
Q Consensus 99 ~~--~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~d~~v 172 (335)
.. ..+.. ......++++| ++.++++-..++.|..+|...+.......... ...-++++|+++ ++++-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 22221 23456888999 67777777778999999987654423332222 123578999999 66666677899
Q ss_pred EEEEccCCCCC--ceeeEEecc------C-----CC-ccce-EEEEc--------cCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 173 KLYDVRSFDKG--PFSNFKFAA------E-----KE-CDWT-GIKFS--------ADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 173 ~iwd~~~~~~~--~~~~~~~~~------~-----~~-~~~~-~~~~s--------~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
..++....... ....+.-.. + .. ..-. .++.. +++.+.++-..++.|+.++. ++..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence 99887532100 000111000 0 00 0112 45553 34555555556678888884 4543
Q ss_pred eeeeccc-----cc----------CCCCceEEEEcC-CCcEEEEEeCCCcEEEEECC
Q psy16316 230 LQTLAGF-----LN----------NKGCPLEASFTP-DSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 230 ~~~~~~~-----~~----------~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~ 270 (335)
..+.+. .+ .-..+..++++| ++.++++-..+.+|+.++.+
T Consensus 374 -~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 -TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 333321 00 012577899999 46677776677788887754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00013 Score=63.03 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=127.6
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec-----------C--------CCCCeEEEEECC-CCCEEEEe
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-----------G--------HTKKVNSLCLSP-IDDTFISG 125 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----------~--------H~~~V~~~~~~~-~~~~l~s~ 125 (335)
...+++.+++...+ .+..++.|..|+..+++...... + ....+..+++.+ +++++++
T Consensus 21 p~~i~~d~~g~~l~--v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~- 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFY--TSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV- 97 (322)
T ss_dssp CCCEECCTTCSSEE--EECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred ceEEEEcCCCCEEE--EEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence 34455555433222 23346778778776654322110 0 113578899997 5654444
Q ss_pred eCCCcEEEeecCCCCceeEEEe-c----CCcceEEECC-CCCEEEEEEc-----------------CCeEEEEEccCCCC
Q psy16316 126 SYDKTVRLWDLRSPNCQGIMHV-S----GSRPIAAFDP-EGLIFGVGVN-----------------SDTIKLYDVRSFDK 182 (335)
Q Consensus 126 s~D~~i~vWd~~~~~~~~~~~~-~----~~~~~~~~~~-~~~~~~~~~~-----------------d~~v~iwd~~~~~~ 182 (335)
...+.|..+|..++........ . .....+++++ +|+++++... ++.+..+|.....
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE- 176 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence 4445588888765433222111 1 1123467889 8988876533 2567777764321
Q ss_pred CceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCe--eeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQ--CLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
....... -...++++++|+++.|+++ +..+.|..|++.... ..+.+.. ... +..++++++|+++++..
T Consensus 177 --~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 177 --TTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp --EEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEE
T ss_pred --EEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEec
Confidence 1111110 1123579999999977666 456789999987521 1122221 123 67899999999877765
Q ss_pred C----------CCcEEEEECCCCeeEEEeCCCC---CCCeEEEEeCCCCcEEEeeec--eeEEec
Q psy16316 260 T----------DGRIHIWNAEKGFKVCVLDADH---PSPVQTIQFNPKFNMMASACT--NLAFWI 309 (335)
Q Consensus 260 ~----------dg~v~iwd~~~~~~~~~~~~~h---~~~v~~v~~sp~~~~~~s~~~--~~~~w~ 309 (335)
. .+.|..+|.. +.....+.... ...+..+++ .++.+.++... .+..+.
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 4 4678888864 65555443321 235667776 35666665433 344443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00064 Score=58.27 Aligned_cols=222 Identities=8% Similarity=0.000 Sum_probs=126.0
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCcee
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQG 143 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~ 143 (335)
...+++.+++. ++.+...++.|..+|.... ....+. -......+++.++++++++..... .|..+|..+++...
T Consensus 34 pegia~~~~g~--lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 34 LENLASAPDGT--IFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp EEEEEECTTSC--EEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cceEEECCCCC--EEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 34556655433 4444445677877877653 333232 124678999999998777654432 46667777766543
Q ss_pred EEEecCC--cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEE------eccCCCccceEEEEccCCCEEEEEe-
Q psy16316 144 IMHVSGS--RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK------FAAEKECDWTGIKFSADGKYILIST- 214 (335)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~l~~~~- 214 (335)
....... ....+..+++..+++...++.|..+|...... ...... .....-...+++ +|++..|+++.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 3332211 11223345555566555578888888653100 000000 000011122455 88888776654
Q ss_pred CCCeEEEEECCC-Cee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE--eCCCCCCCeEEE
Q psy16316 215 NGSIIRTFDAYN-GQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTI 289 (335)
Q Consensus 215 ~~~~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~--~~~~h~~~v~~v 289 (335)
..+.|..|+... ++. .+.+.. ...+..++++++|+++++....++|.+++.. +..... +.. .....+++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~ 260 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAV 260 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG-TCTTEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc-ccCCceEE
Confidence 467899999864 321 111111 1245679999999988888888899999975 544322 222 22457899
Q ss_pred EeC---CCCcEEEe
Q psy16316 290 QFN---PKFNMMAS 300 (335)
Q Consensus 290 ~~s---p~~~~~~s 300 (335)
+|. |++..|..
T Consensus 261 a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 261 AFGQTEGDCTAIYV 274 (306)
T ss_dssp EECCSTTTTTEEEE
T ss_pred EEecccCCCCEEEE
Confidence 998 88654443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00012 Score=68.72 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=105.8
Q ss_pred CCEEEEecC-CCeEEEEEc-cCCcceeeeecccc-cc----------eEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 33 GLLLISCSE-DDQIVIYDC-ELGTNKRTVFSKKY-GV----------DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 33 g~~lasgs~-Dg~i~lwd~-~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
+..+..++. ++.|.-.|. ++|+.+........ .. ..+.. .... + ..+..|+.+..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-v-~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQ-I-VKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTE-E-EEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCE-E-EEEeCCCEEEEEECCCCCE
Confidence 344555566 899999999 89988766532211 00 01111 1222 2 2334588999999999987
Q ss_pred Eeeec--CCCC--CeEE-EEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecCCc-----------------
Q psy16316 100 IRYFP--GHTK--KVNS-LCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSGSR----------------- 151 (335)
Q Consensus 100 ~~~~~--~H~~--~V~~-~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~~~----------------- 151 (335)
+-.++ ++.. .+.+ ..+ .++ .++.++. |+.|..+|..+++...........
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 75543 2211 1211 111 133 4555544 799999999999876555432211
Q ss_pred ----------------------ceEEECCCCCEEEEEEcC----------------CeEEEEEccCCCCCceeeEEeccC
Q psy16316 152 ----------------------PIAAFDPEGLIFGVGVNS----------------DTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 152 ----------------------~~~~~~~~~~~~~~~~~d----------------~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
...+++++...+..+..+ +.|..+|.++.+. .-.++....
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~~~~~~ 293 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGYQKTPH 293 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEEESSTT
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEecCCCC
Confidence 123455555555554421 2588888876431 111211110
Q ss_pred ------CCccceEEEEccCCC---EEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 194 ------KECDWTGIKFSADGK---YILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 194 ------~~~~~~~~~~s~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
......-+...++|+ .++.++.++.++++|..+++.+...
T Consensus 294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 001111122335674 5677888999999999999876554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0024 Score=62.37 Aligned_cols=275 Identities=9% Similarity=0.028 Sum_probs=160.6
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec--------ccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS--------KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
...|.++...++|.+-+ |+.++-|..||..++....-... ....|..+.....+....+++ .++.+..+
T Consensus 356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt--~~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT--HAGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE--TTTEEEEE
T ss_pred CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe--CcCceeEE
Confidence 45699999999998554 67777899999877654322111 112344444433332123332 35678889
Q ss_pred EcCCCceEeeec----CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-------cCCcceEEECCCCC
Q psy16316 93 SLHDNKYIRYFP----GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGL 161 (335)
Q Consensus 93 ~~~~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 161 (335)
|..+++...... .+...|.++...+++++.+.. .+ -+.+||..+++....... ...+..+..+++|.
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC
Confidence 988776544322 234679999988887755544 44 588899876543322111 12233456677887
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEe----ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKF----AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+.+.. . +-+..||..... . .+.. .......+.++..+++|.+.+++ .+ -+..||..+.+.. .+....
T Consensus 511 lWigt-~-~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~ 581 (795)
T 4a2l_A 511 LWIGG-E-EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTN 581 (795)
T ss_dssp EEEEE-S-SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGG
T ss_pred EEEEe-C-CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCC
Confidence 76644 3 457778875421 1 1110 00112346788888999866554 44 5788898776533 332211
Q ss_pred c-CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CC-CCCe--EEEEeCCCCcEEEeeeceeEEeccc
Q psy16316 238 N-NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DH-PSPV--QTIQFNPKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 238 ~-~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h-~~~v--~~v~~sp~~~~~~s~~~~~~~w~~~ 311 (335)
+ ....+.++..+++|.+.+++ . +-|..|+..+.... .+.. +- ...+ .++...++|.+.+.+..-+....+.
T Consensus 582 gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~~~p~ 658 (795)
T 4a2l_A 582 GLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPE 658 (795)
T ss_dssp TCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEEECGG
T ss_pred CCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEEecCCceEEEcHH
Confidence 1 22346778888888876665 3 44888998765432 2321 11 1222 4566788999888887666666664
Q ss_pred c
Q psy16316 312 Y 312 (335)
Q Consensus 312 ~ 312 (335)
.
T Consensus 659 ~ 659 (795)
T 4a2l_A 659 L 659 (795)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0028 Score=61.79 Aligned_cols=276 Identities=12% Similarity=0.065 Sum_probs=153.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-------ccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-------KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..|.++...++|.+.+ |..++-+..||.++++...-... ....+..+. .+....+.+++. + .+.+||.
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lwigt~-~-Gl~~~d~ 237 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIY--KDTNGNIWIGTS-K-GLALFNA 237 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEE--ECTTCCEEEEET-T-EEEEEET
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEE--EcCCCCEEEEeC-C-cHheECC
Confidence 4588888888887665 45555688899877643221100 012233333 333333333332 3 6888888
Q ss_pred CCCceEeeecC-------CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-------e--------cCCcc
Q psy16316 95 HDNKYIRYFPG-------HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-------V--------SGSRP 152 (335)
Q Consensus 95 ~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-------~--------~~~~~ 152 (335)
.+++....... ....|.++...++|. |.-|+..+-|.++|..+........ . ...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 77665432221 135689998887775 5556665668889987655332221 1 11233
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec-------cCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-------AEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.+..+++|.+. .|+.++-|..++.... ....+... .-....+.++..+++|.+. +|+.++-+..|+..
T Consensus 317 ~i~~D~~g~lW-igt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 317 YIFQDSFNNIW-IGTWGGGINFISNAPP---TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENG 391 (781)
T ss_dssp EEEECSSCCEE-EEEBSSCEEEECSSCC---SCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETT
T ss_pred EEEEeCCCCEE-EEecCCeEEEeCCCCC---cceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECC
Confidence 45567777765 4555666777876532 12222110 0112346788888888755 45555558888877
Q ss_pred CCeeeeeecc-cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 226 NGQCLQTLAG-FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 226 ~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+++.. .+.. .......|.++...+++.+.+ |+.++-|..++..++....... ......|.++...+++.+.+....
T Consensus 392 ~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~ 469 (781)
T 3v9f_A 392 KRVAI-YNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHA 469 (781)
T ss_dssp EEEEE-CC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETT
T ss_pred CCeEE-EccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECC
Confidence 54322 1110 011224567788888777655 6666669999987664332211 123467999999988887766555
Q ss_pred eeEEecc
Q psy16316 304 NLAFWIP 310 (335)
Q Consensus 304 ~~~~w~~ 310 (335)
.+..+.+
T Consensus 470 Gl~~~~~ 476 (781)
T 3v9f_A 470 GVFVIDL 476 (781)
T ss_dssp EEEEEES
T ss_pred ceEEEeC
Confidence 5555543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0015 Score=63.65 Aligned_cols=277 Identities=11% Similarity=0.009 Sum_probs=157.4
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec---------ccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS---------KKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
....|.++...++|.+- .|+.++-|..++..+.....-... ....|..+.. +....+.+++ .++.+.
T Consensus 311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWigt-~~~Gl~ 386 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGKLWIGT-DGGGIN 386 (781)
T ss_dssp SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSCEEEEE-BSSCEE
T ss_pred CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCCEEEEe-CCCcEE
Confidence 45679999999999744 456667788888765543221100 1122344433 3333333332 245577
Q ss_pred EEEcCCCceEeee---cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEE
Q psy16316 91 YLSLHDNKYIRYF---PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 91 ~~~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 164 (335)
.++..++...... ......|.++...++++ |..|+.++-+..+|..+++...... ....+..+..++++.+.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred EEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 7887665433221 12346789998887776 4457777778899887654322111 012233445566676554
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEecc---CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-ccCC
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAA---EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-LNNK 240 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~ 240 (335)
|+. +-+..+|..+.. ...+.... .....+.++..+++|.+.+.+..++ +..||..+++. +.+... .-..
T Consensus 466 -gt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~ 538 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCS 538 (781)
T ss_dssp -EET-TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSC
T ss_pred -EEC-CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCC
Confidence 444 568888876422 22221111 0123567888899998666544344 67788876643 233211 1123
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--C-CCCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--D-HPSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~-h~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
..+.++...++|.+.++.. +|-|..||..++.... +.. + ....|.++...++|.+-+++...+..+.+
T Consensus 539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~ 609 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYIT 609 (781)
T ss_dssp SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEET
T ss_pred CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEEcCCceEEEEC
Confidence 4567888888888666544 6654889887654222 211 1 22468888899999888877655555543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0018 Score=58.52 Aligned_cols=239 Identities=11% Similarity=0.089 Sum_probs=133.9
Q ss_pred ceEEEEecC-CCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---Cc-EEEeecCCCC
Q psy16316 66 VDLIRFTHA-KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KT-VRLWDLRSPN 140 (335)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~-i~vWd~~~~~ 140 (335)
...+++.++ ....++.+-.. +.|+.+++.++...... +.......++++++++++++-... .. +...+.....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 445677664 23333333222 78889998777655443 344568899999999966665422 11 3333322221
Q ss_pred ce-eEEEecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCC
Q psy16316 141 CQ-GIMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGS 217 (335)
Q Consensus 141 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~ 217 (335)
.. ...........++++| ++.++++-..++.|..+|..... ....+..... ...-..++++|++++|+++. ..+
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--~~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT--LTEEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC--EEEEEEECSC-CSSCEEEEECTTSSEEEEEETTTT
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe--EEEEEeccCC-CCCcccEEEeCCCCEEEEEeCCCC
Confidence 10 1111111223467888 78888777777889998876321 1011111111 11124699999999666654 457
Q ss_pred eEEEEECC--CCee--eeeecccc------------cCCCCceEEEE---------cCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 218 IIRTFDAY--NGQC--LQTLAGFL------------NNKGCPLEASF---------TPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 218 ~i~i~d~~--~~~~--~~~~~~~~------------~~~~~v~~~~~---------sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.|+.++.. ++.. ...+.+.. ..-..+..+++ .+++.++++-....+|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998764 2321 11222210 01234667999 788888888888889999985 56
Q ss_pred eeEEEeCCCC----------------CCCeEEEEeC-CCCcEEEeeeceeEEecc
Q psy16316 273 FKVCVLDADH----------------PSPVQTIQFN-PKFNMMASACTNLAFWIP 310 (335)
Q Consensus 273 ~~~~~~~~~h----------------~~~v~~v~~s-p~~~~~~s~~~~~~~w~~ 310 (335)
........+. -..-..|++. +++.++++-.++-+|+..
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 4333321110 0124578888 567666665555455443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0023 Score=57.76 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=128.2
Q ss_pred ceEEEEecC-CCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC-CC----cEEEeecCCC
Q psy16316 66 VDLIRFTHA-KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-DK----TVRLWDLRSP 139 (335)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~----~i~vWd~~~~ 139 (335)
...+++.+. ....+++... +.|+.+|+..+....... .......++++++++.|+.+.. ++ .+.+.+. .+
T Consensus 139 P~~lavdp~~~g~Lyv~d~~--~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ--HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT--EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCEEEECCCCCCeEEEEeCC--CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 345666652 3333333222 788888988766544443 4456789999999985444433 22 2333443 33
Q ss_pred Cce--eEEEecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eC
Q psy16316 140 NCQ--GIMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TN 215 (335)
Q Consensus 140 ~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~ 215 (335)
... ..+........++++| ++.++++-..++.|..++.... ....+.... .......++|+|++++|+.+ ..
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---EEEEEEECS-SSSCCEEEEECTTSSEEEEEETT
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcC-CCCcceeEEEcCCCCEEEEEECC
Confidence 222 1222122234467888 7888888878889999998642 111111111 11234679999999966655 45
Q ss_pred CCeEEEEECCC--Cee--eeeeccccc------------CCCCce-EEEEc--------CCCcEEEEEeCCCcEEEEECC
Q psy16316 216 GSIIRTFDAYN--GQC--LQTLAGFLN------------NKGCPL-EASFT--------PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 216 ~~~i~i~d~~~--~~~--~~~~~~~~~------------~~~~v~-~~~~s--------p~~~~l~tgs~dg~v~iwd~~ 270 (335)
.+.|..++... ++. ...+.+..+ ....+. .++.. +++.++++=....+|+.++.
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~- 369 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP- 369 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence 67888887542 221 112221100 111233 34443 45677777777788999884
Q ss_pred CCeeEEEeCCC---C-------------CCCeEEEEeCCC-CcEEEeeeceeEEe
Q psy16316 271 KGFKVCVLDAD---H-------------PSPVQTIQFNPK-FNMMASACTNLAFW 308 (335)
Q Consensus 271 ~~~~~~~~~~~---h-------------~~~v~~v~~sp~-~~~~~s~~~~~~~w 308 (335)
++........+ . -..=..+++.|+ +.++++-.++-+|.
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 56433332110 0 013468899994 66666655554444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00017 Score=68.90 Aligned_cols=230 Identities=9% Similarity=0.031 Sum_probs=120.8
Q ss_pred EEEEEECCCCCEEEEec-CCCeEEEEEccCCcceeeeecccccc-eEEEEecCCCeeEEeecC-CC-----CeEEEEEcC
Q psy16316 24 ITSIDYSADGLLLISCS-EDDQIVIYDCELGTNKRTVFSKKYGV-DLIRFTHAKQAAIHASTK-ID-----DTVRYLSLH 95 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d-----~~i~~~~~~ 95 (335)
..++.+..+|++++.|| .+..+.+||..+.+-...-.-..... ..+...+++ .+++.++ .+ ..+.+||..
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC--eEEEEeCcccCCcccccceEeCCC
Confidence 34567789999999998 45689999998764332111111111 122222232 2333343 33 578999998
Q ss_pred CCceEee-----ecCCCCCeEEEEECCCCCEEEEeeCC---------CcEEEeecCCCCceeEEEecC----------Cc
Q psy16316 96 DNKYIRY-----FPGHTKKVNSLCLSPIDDTFISGSYD---------KTVRLWDLRSPNCQGIMHVSG----------SR 151 (335)
Q Consensus 96 ~~~~~~~-----~~~H~~~V~~~~~~~~~~~l~s~s~D---------~~i~vWd~~~~~~~~~~~~~~----------~~ 151 (335)
+++-... ....... ....+..++..++.|+.| ..+..||..+........... ..
T Consensus 323 t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 7654332 0000000 001122344444555444 456788887765432221110 11
Q ss_pred ceEEE-CCCCCEEEEEEcCC-----------eEEEEEccCCCCCceeeEE-eccCCCccceEEEEccCCCEEEEEeCC--
Q psy16316 152 PIAAF-DPEGLIFGVGVNSD-----------TIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSADGKYILISTNG-- 216 (335)
Q Consensus 152 ~~~~~-~~~~~~~~~~~~d~-----------~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~-- 216 (335)
..+.+ ..++++++.|+.+. .+.+||..+. ...... ..........++...|+++.++.++.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 12223 24678888887532 5777776542 222221 001111112345677899999988643
Q ss_pred ---------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 217 ---------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 217 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
..+.+||..+.+... +............+.+.|+++.++.||.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence 458999998766432 2211112222334567799999999995
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0011 Score=62.33 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=108.4
Q ss_pred CCEEEEecC-CCeEEEEEc-cCCcceeeeeccccc-----------ceEEEEecCCCe--eEEeecCCCCeEEEEEcCCC
Q psy16316 33 GLLLISCSE-DDQIVIYDC-ELGTNKRTVFSKKYG-----------VDLIRFTHAKQA--AIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 33 g~~lasgs~-Dg~i~lwd~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~ 97 (335)
+..+..++. ++.|.-+|. ++|+.+......... ...++..+.... ..+..+..|+.+.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445556666 899999999 899887665332110 011233212221 11223345888999999999
Q ss_pred ceEeeecCCC--C--CeEE-EEECCCCCEEEEee------CCCcEEEeecCCCCceeEEEecCCc---------------
Q psy16316 98 KYIRYFPGHT--K--KVNS-LCLSPIDDTFISGS------YDKTVRLWDLRSPNCQGIMHVSGSR--------------- 151 (335)
Q Consensus 98 ~~~~~~~~H~--~--~V~~-~~~~~~~~~l~s~s------~D~~i~vWd~~~~~~~~~~~~~~~~--------------- 151 (335)
+.+-...... . .+.+ -.+ .++ .++.++ .++.|+-+|.++++..-........
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8775443211 0 1211 111 133 455554 3899999999999876555432211
Q ss_pred ------------------------ceEEECCCCCEEEEEEcC----------------CeEEEEEccCCCCCceeeEEec
Q psy16316 152 ------------------------PIAAFDPEGLIFGVGVNS----------------DTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 152 ------------------------~~~~~~~~~~~~~~~~~d----------------~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
...++++...++..+..+ ..|.-+|..+.+. .-.++..
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~W~~q~~ 297 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--KFGYQKT 297 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--EEEEESS
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--eeEeecC
Confidence 123455566666665543 3788888876432 1112111
Q ss_pred cCC------CccceEEEEc-cCC---CEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 192 AEK------ECDWTGIKFS-ADG---KYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 192 ~~~------~~~~~~~~~s-~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
... .....-+... .+| ..++.++.++.++++|..+|+.+...
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 100 0000111222 467 46777889999999999999876544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0026 Score=56.86 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=135.0
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceEeeecCCCCCeEEEEECC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSP 117 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~ 117 (335)
...|+..|++...... +......+..++|.+.....+.+ ....+.|..+++... .....+.........+++.+
T Consensus 91 ~~~I~~i~l~~~~~~~-~~~~~~~~~~l~~d~~~~~lyws-D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWS-DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TTEEEEECTTSCSCEE-EECSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred cceeEEEccCCcceeE-eccccCcceEEeeeeccCceEEE-ecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 3688888887654433 22333456677887755544443 334677888887652 22333333445678899987
Q ss_pred -CCCEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCC-CCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccC
Q psy16316 118 -IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPE-GLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 118 -~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
.+++.++-...+.|.+.|+............. ....++++|. +.++.+-.. .+.|...++.... ...+ ...
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~~~--~~~ 243 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSL--VTE 243 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CEEE--ECS
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cEEE--EEC
Confidence 45667777778899999987654433332221 1234678874 455555433 3678888775421 1111 111
Q ss_pred CCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 194 KECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.-...++++++|++..|..+.. ...|..+|+..... +.+.........+..+++. .+.++++-...+.|..+|..++
T Consensus 244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 1123478999998888877654 56899999865432 3332211122345677773 4467777777888999997777
Q ss_pred eeEEEe
Q psy16316 273 FKVCVL 278 (335)
Q Consensus 273 ~~~~~~ 278 (335)
.....+
T Consensus 322 ~~~~~i 327 (400)
T 3p5b_L 322 SDVNLL 327 (400)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 554444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0024 Score=55.00 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=132.0
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC----CceEeeecCCCCCeEEEEECCC
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPI 118 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~~ 118 (335)
..|+..|+++......+ ........++|.+.....+. +....+.|..+++.. ......+.........+++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~-~~~~~p~g~~~d~~~~~ly~-~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYW-SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEE-EETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehh-cCCCceEEEEEEeCCCEEEE-EECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 46888888776544332 22334566777765544444 334567888888876 2222233333345678888864
Q ss_pred -CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcC-CeEEEEEccCCCCCceeeEEeccCC
Q psy16316 119 -DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNS-DTIKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 119 -~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
+++.++-...+.|.+.|+............ .....++++|. +.++.+.... +.|..+++... ....+. ...
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~~--~~~ 162 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLV--TEN 162 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEE--CSS
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEEE--ECC
Confidence 456677677899999998754433333211 22234678874 4555555443 67888877531 111111 111
Q ss_pred CccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 195 ECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
-...++++++|++..|..+. ..+.|..+|.... ..+.+.........+..+++. .+.++++-...++|..++..++.
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 22347899999888777665 4568999998743 223332211122346678885 46677777778899999987665
Q ss_pred eEEEe
Q psy16316 274 KVCVL 278 (335)
Q Consensus 274 ~~~~~ 278 (335)
....+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 44443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0012 Score=63.99 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=73.7
Q ss_pred cEEEEEEC-CCCCEEEEe-----cCCCeEEEEEccCC-cceeeeecccccceEEEEecCCCeeEEeecCCC---CeEEEE
Q psy16316 23 KITSIDYS-ADGLLLISC-----SEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID---DTVRYL 92 (335)
Q Consensus 23 ~V~~v~~s-~~g~~lasg-----s~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~~~ 92 (335)
.+....|| |||++||-+ +...+|+++|++++ +...... ......++|++++...++...... ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 999988733 23346999999988 6322111 112456789888766555432111 357778
Q ss_pred EcCCCce--Eeeec-CCCCCeEEEEECCCCCEEEEee---CCCcEEEeecCCC
Q psy16316 93 SLHDNKY--IRYFP-GHTKKVNSLCLSPIDDTFISGS---YDKTVRLWDLRSP 139 (335)
Q Consensus 93 ~~~~~~~--~~~~~-~H~~~V~~~~~~~~~~~l~s~s---~D~~i~vWd~~~~ 139 (335)
++.++.. ...+. .+.....++.|+|++++|+..+ ....|.++|+.++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8876542 23333 2334567889999999876654 3456888898765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0056 Score=62.08 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=143.8
Q ss_pred CccEEEEEECCC------CCEEEEecC-CCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 21 TDKITSIDYSAD------GLLLISCSE-DDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 21 ~~~V~~v~~s~~------g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.+.|.|+++.|. +.++|.|.+ |++++|+++...+......- .......+.+........+..+-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 567999999864 368999997 99999999986544322111 1112233333222233444455567776555
Q ss_pred EcC--CCceEe---eecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECCCC--CE
Q psy16316 93 SLH--DNKYIR---YFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDPEG--LI 162 (335)
Q Consensus 93 ~~~--~~~~~~---~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 162 (335)
.++ ++.... .+-| ..++.=..+...+. .++.+| |.-.-++--+ ++. ...... .......|+... .-
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l-~~s~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKL-VFSNVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSE-EEEEBSSSCCCEEEEECCSSSTTE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-Cce-EEeccChHHhceEeccCcccCCCc
Confidence 543 333321 2333 33443333333332 233333 3333333222 121 111111 122334454321 22
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC--------------------------
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-------------------------- 216 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-------------------------- 216 (335)
++ +.+++.++|..+......+...+.. ......++++|+.+.+++.+.+
T Consensus 709 ~v-~~~~~~LrI~~i~~~~~~~~~~ipL----~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 709 LA-LANNSTLTIGTIDEIQKLHIRTVPL----YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp EE-EECSSCEEEEEECCSSSEEEEEEEC----SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred EE-EEcCCceEEEEecccCCeeEEEEeC----CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 33 3345678888876543222222211 1234567777776655443311
Q ss_pred -----------------------CeEEEEECCCCeeeeeecccccC-CCCceEEEEcCC-CcEEEEEe----------CC
Q psy16316 217 -----------------------SIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPD-SKYVISGS----------TD 261 (335)
Q Consensus 217 -----------------------~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~sp~-~~~l~tgs----------~d 261 (335)
..|+++|..+.+.+..+.-..+. ..++..+.|..+ ..+|+.|. ..
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 23677777776655444211111 112223344433 46888887 35
Q ss_pred CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecccc
Q psy16316 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312 (335)
Q Consensus 262 g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~ 312 (335)
|+|++|++.+++..........++|++++=- +|.++|+.+..+++|.+..
T Consensus 864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~ 913 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTT 913 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECT
T ss_pred eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCC
Confidence 8899999875543333333346788887733 4677777778899997753
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0037 Score=51.93 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=124.5
Q ss_pred cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC
Q psy16316 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
+....++.+++.++....+++.. .++.|...|.. ++.++.+. +-......+++.+++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d-~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTIN-KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEE-TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEEC-CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 34456888999887655444444 37788888887 77777763 22356788899888887777667788999988665
Q ss_pred Cce---eEEEec-------CCcceEEECCCCCEEEEEEcCCeEEEEEccCCC-CCceeeEEe----ccCCCccceEEEEc
Q psy16316 140 NCQ---GIMHVS-------GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFSNFKF----AAEKECDWTGIKFS 204 (335)
Q Consensus 140 ~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~----~~~~~~~~~~~~~s 204 (335)
... ...... .....++++|.+..+.++.......+|.+.... ......... .........+++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 432 112111 112467888888666566555555566554211 111111111 01122346789999
Q ss_pred cCCCEE-EEEeCCCeEEEEECCCCeeeeeeccc---c---cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 205 ADGKYI-LISTNGSIIRTFDAYNGQCLQTLAGF---L---NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 205 ~~~~~l-~~~~~~~~i~i~d~~~~~~~~~~~~~---~---~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
|....+ +.+..++.+..+|.. ++.+..+.-. . .....+-.++|.|+|+++++ ++-..++.+..
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 976554 456667788889865 4444433211 1 11234668999999986666 67667777754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0011 Score=64.33 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=105.8
Q ss_pred CCCC-CeEEEEEC-CCCCEEEEeeC-C----CcEEEeecCCC-CceeEEEecCCcceEEECCCCCEEEEEEcC-----Ce
Q psy16316 105 GHTK-KVNSLCLS-PIDDTFISGSY-D----KTVRLWDLRSP-NCQGIMHVSGSRPIAAFDPEGLIFGVGVNS-----DT 171 (335)
Q Consensus 105 ~H~~-~V~~~~~~-~~~~~l~s~s~-D----~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~ 171 (335)
+|.- .+...+|+ |+|++|+-+.. + .+|+++|+.++ ..... ..........|+|+++.++....+ ..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 4443 67889999 99997774432 2 35999999987 53211 011112346799999877766554 25
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---CCeEEEEECCCCe-ee--eeecccccCCCCceE
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---GSIIRTFDAYNGQ-CL--QTLAGFLNNKGCPLE 245 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---~~~i~i~d~~~~~-~~--~~~~~~~~~~~~v~~ 245 (335)
|..+++.+........+. .....-...+.+||||++|+.... ...|+++|+.++. .. +.+... .......
T Consensus 249 v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s 324 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYE--EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYD 324 (751)
T ss_dssp EEEEETTSCGGGCEEEEE--CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEE
T ss_pred EEEEECCCCchhcEEEEe--cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEE
Confidence 777776542211111111 111122356889999999887653 3468889988752 12 333221 1222333
Q ss_pred EEEcCCCcEEEEEeCC----CcEEEEECCCC-eeEE-EeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 246 ASFTPDSKYVISGSTD----GRIHIWNAEKG-FKVC-VLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~d----g~v~iwd~~~~-~~~~-~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+.|+.++.+++....+ ..|..++..++ .... .+.......+..+++.. +.++++.. +..++|..+
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEe
Confidence 4444444445554443 35677777642 2111 23221111345555553 23334432 445666544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0094 Score=52.86 Aligned_cols=207 Identities=8% Similarity=0.038 Sum_probs=122.1
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
...+..++|++.+ .++.+-...+.|..++.+.+.....+.........+++.+.....+.+ ....+.|.+.+++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~-d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT-DSGTSRIEVANLDGAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEE-ETTTTEEEECBTTSCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEE-cCCCCeEEEEeCCCCce
Confidence 3447789999755 455566678899999987664333222222344556666544444333 33466788888765543
Q ss_pred EeeecCCCCCeEEEEECCCCC-EEEEeeCC-CcEEEeecCCCCceeEEEecCC-cceEEECCC-CCEEEEEEcCCeEEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDD-TFISGSYD-KTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPE-GLIFGVGVNSDTIKLY 175 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D-~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~v~iw 175 (335)
...+.........+++.|.+. ++++-... +.|...|+.............. -..++++|+ +.++.+-+..+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 334444446678999998655 45555445 7888888765433222221111 234678864 5566666677889999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
|+.... ...+ .........++++ ..+...++....+.|..++..+++..+.+.
T Consensus 274 d~dG~~---~~~~--~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSH---RKAV--ISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CTTSCS---CEEE--ECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCe---eEEE--EECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 876421 1111 1111123356777 344455555567789889877777666654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0047 Score=56.40 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=139.0
Q ss_pred cEEEEEECCC--CCEEEEecCCCeEEEEEccCCcceeeeeccc---ccceEEEE-------ecCCCeeEEeecCC-----
Q psy16316 23 KITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKK---YGVDLIRF-------THAKQAAIHASTKI----- 85 (335)
Q Consensus 23 ~V~~v~~s~~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~----- 85 (335)
....|+|+|. +.++++-...+.|++.|.+.+.......... .....++| .++....+++....
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3678999983 4455555555778888987765543322211 23667888 77666444443322
Q ss_pred CCeEEEEEcCC-CceE-----eeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecC-------CCCc----------
Q psy16316 86 DDTVRYLSLHD-NKYI-----RYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLR-------SPNC---------- 141 (335)
Q Consensus 86 d~~i~~~~~~~-~~~~-----~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~-------~~~~---------- 141 (335)
...+.+++... +... +.+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 11244554333 2221 222211 23457788995 5666777788899999987 4543
Q ss_pred -e-eEEEecC-C-cceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCce---eeEEec-c-----C-----CCc-cce-E
Q psy16316 142 -Q-GIMHVSG-S-RPIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPF---SNFKFA-A-----E-----KEC-DWT-G 200 (335)
Q Consensus 142 -~-~~~~~~~-~-~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~---~~~~~~-~-----~-----~~~-~~~-~ 200 (335)
. .+..... . ...++++|+|+ ++++-+..+.|+.++...... .. ..+.-. . + ... ... .
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 1 1222221 1 23578999998 466666778898877543111 00 111100 0 0 000 112 3
Q ss_pred EEEc-------cCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc---------------------CCCCceEEEEcCC-
Q psy16316 201 IKFS-------ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN---------------------NKGCPLEASFTPD- 251 (335)
Q Consensus 201 ~~~s-------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------------------~~~~v~~~~~sp~- 251 (335)
+... +++.+.++-..+..|+.++ .++. +.++.+... .-..+..++++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 5554 4566666666678899998 4553 445543210 1134667888886
Q ss_pred CcEEEEEeCCCcEEEEECCCCe
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
+.++++=..+.+|+.++++...
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCc
Confidence 7777777777888888876543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.009 Score=52.19 Aligned_cols=206 Identities=8% Similarity=0.038 Sum_probs=121.8
Q ss_pred ccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 22 DKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 22 ~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
..+..++|++.+. ++.+-...+.|..++.+.+.....+.........+++.+.....+. +....+.|.+.+++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~-~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW-TDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE-EcCCCCeEEEEcCCCCceE
Confidence 3467899997554 5556567889999998766533332222234556677654444433 3344678888888765443
Q ss_pred eeecCCCCCeEEEEECCCC-CEEEEeeCC-CcEEEeecCCCCceeEEEecCC-cceEEECCC-CCEEEEEEcCCeEEEEE
Q psy16316 101 RYFPGHTKKVNSLCLSPID-DTFISGSYD-KTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPE-GLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~-~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~v~iwd 176 (335)
..+.........+++.|.+ .++++-... +.|...++.............. -..++++|+ +.++.+-+..+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 3444444567899999855 455665555 7888888765332221111111 234678874 55666666678899999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+..... ..+. ........++++ ..+...++-...+.|..++..+++..+.+.
T Consensus 232 ~dG~~~---~~~~--~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSHR---KAVI--SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTSCSC---EEEE--CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCce---EEEE--eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 864211 1111 111123356777 344444455566788888877776665554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0068 Score=56.90 Aligned_cols=164 Identities=11% Similarity=0.052 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCceEeeec--CCC--------CCeEEEEEC-CCCC---EEEEeeCCCcEEEeecCCCCceeEEEecCC--
Q psy16316 87 DTVRYLSLHDNKYIRYFP--GHT--------KKVNSLCLS-PIDD---TFISGSYDKTVRLWDLRSPNCQGIMHVSGS-- 150 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~--~H~--------~~V~~~~~~-~~~~---~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-- 150 (335)
+.+.-+|+.+++.+-.++ .|. .++. +... .+|+ .++.++.+|.+.++|..+++.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 578899999998876654 232 1222 1221 3563 788899999999999998876543322110
Q ss_pred --------------------------------------------cceEEECCCCCEEEEEE-------------------
Q psy16316 151 --------------------------------------------RPIAAFDPEGLIFGVGV------------------- 167 (335)
Q Consensus 151 --------------------------------------------~~~~~~~~~~~~~~~~~------------------- 167 (335)
...++++|+..++.+..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 01234566544443332
Q ss_pred --------------cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 168 --------------NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 168 --------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
.++.+.-||+.+.+. .-...... ...+-.+...+..++.++.|+.++.||.++|+.+-++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~--~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKV--VWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCE--EEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCE--EEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 246777888766431 11111111 1111122234677888999999999999999988777
Q ss_pred cccccCCCCceEEEEcCCCc-EEEEEe
Q psy16316 234 AGFLNNKGCPLEASFTPDSK-YVISGS 259 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~-~l~tgs 259 (335)
......... -+.+..+|+ |+++.+
T Consensus 524 ~~~~g~~a~--P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 524 QTGSGIVSP--PITWEQDGEQYLGVTV 548 (582)
T ss_dssp ECSSCCCSC--CEEEEETTEEEEEEEE
T ss_pred cCCCCcccC--ceEEEECCEEEEEEEc
Confidence 643322222 256667776 444443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0093 Score=51.56 Aligned_cols=265 Identities=12% Similarity=0.067 Sum_probs=136.7
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec----ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS----KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
-...+.+|.|.+++..+|. +.+|.| +...+.++.-..+.. ....+..+.+.+ ...+++ + ..+.+.. ..+
T Consensus 34 ~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~-g-~~g~i~~-S~D 106 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIV-G-EPPIMLH-TTD 106 (327)
T ss_dssp CSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEE-E-ETTEEEE-ESS
T ss_pred CCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEE-E-CCCeEEE-ECC
Confidence 3457999999988887774 567765 334444432222211 123456666653 333332 2 2343332 333
Q ss_pred CCceEeeec---CCCCCeEEEEECCCCCEEEEeeCCCcE-EEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcC
Q psy16316 96 DNKYIRYFP---GHTKKVNSLCLSPIDDTFISGSYDKTV-RLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 96 ~~~~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~D~~i-~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d 169 (335)
.++.-+... .+...+..+.+.+++..++.+ .++.| +-.|- ++.-..... ......+.+.+++.+++++...
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg--G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS--GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST--TSSEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred CCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC--CCCCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence 333322221 234557788877666655555 45544 44442 221111111 1223345678888888777555
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-ccCCCCceEEEE
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-LNNKGCPLEASF 248 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~ 248 (335)
...+..|-. ......... .....+..+.+++++..++++ .++.+++.+...++.-..+... ......+..+++
T Consensus 184 ~~~~S~d~g---G~tW~~~~~--~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 184 SFYSTWEPG---QTAWEPHNR--TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp SEEEEECTT---CSSCEEEEC--CSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred cEEEEeCCC---CCceeECCC--CCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 555544421 112222211 223355778899998866554 5677766543334332222211 111224667889
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC--CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.|++..+++|. ++.| ++....+..-..+. ...+..+.+++|.+++.+++.+.
T Consensus 258 ~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 258 RTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp SSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred cCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 98888777765 6666 34444443322232 12346788999987766666654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0095 Score=51.64 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=115.9
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEec----CCCe--eEEeecCC--CCeEEEEEcC--CCceEe
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH----AKQA--AIHASTKI--DDTVRYLSLH--DNKYIR 101 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~--d~~i~~~~~~--~~~~~~ 101 (335)
..++++.-.+.+-+.+||+ .|+.+..+.. ..++.+..-+ .+.. ..+++... ++++++|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456666677889999999 7777766543 2333333322 1111 34555556 7899999774 333 44
Q ss_pred eecC------CC-CCeEEEEE--CCC-CC-EEEEeeCCCcEEEeecC---CC----CceeEEEecCCcceEEECCCCCEE
Q psy16316 102 YFPG------HT-KKVNSLCL--SPI-DD-TFISGSYDKTVRLWDLR---SP----NCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 102 ~~~~------H~-~~V~~~~~--~~~-~~-~l~s~s~D~~i~vWd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
.+.. -. ..+..+++ +|. +. +++....++.+..|++. .+ +..+.+........+..++....+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL 194 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence 4421 11 45556776 674 43 57777888999999983 22 233445555555566777777777
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEec--cCCCccceEEEE--ccCCC-EEEEEeC-CCeEEEEECC-CCeeeeee
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFA--AEKECDWTGIKF--SADGK-YILISTN-GSIIRTFDAY-NGQCLQTL 233 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~--s~~~~-~l~~~~~-~~~i~i~d~~-~~~~~~~~ 233 (335)
.++-.+.-|-.+|.+............. ......+.+|++ .++++ +|++++. +....+||.. +.+.+..+
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 7887775555555433211111112111 122235677887 56666 7777774 4689999986 55544444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.009 Score=51.32 Aligned_cols=200 Identities=10% Similarity=0.102 Sum_probs=119.2
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee-ecC----CCC--CeEEEEE---CCCCCEEEEee----------
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-FPG----HTK--KVNSLCL---SPIDDTFISGS---------- 126 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~----H~~--~V~~~~~---~~~~~~l~s~s---------- 126 (335)
...+|... ...+..+....++|..|+...+..... +.+ ... .+..+.+ .|++++++...
T Consensus 16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45566554 334555666789999999876544333 332 111 3578999 57876666433
Q ss_pred ---CCCcEEEeecC---CCCceeEEEecC--------------CcceEEECCCCCEEEEEEcC-CeEEEEEccCCCCCce
Q psy16316 127 ---YDKTVRLWDLR---SPNCQGIMHVSG--------------SRPIAAFDPEGLIFGVGVNS-DTIKLYDVRSFDKGPF 185 (335)
Q Consensus 127 ---~D~~i~vWd~~---~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~ 185 (335)
.+..|..+|+. +++......+.. ...-++.+++|+.+++++.. +.|..++.... ..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~---~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK---TV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC---CE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC---EE
Confidence 26889999999 776654443221 12346889999999999888 87777665431 12
Q ss_pred eeEEec---cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeec--ccccCCCCceEE-EEcCCCcE-EE
Q psy16316 186 SNFKFA---AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLA--GFLNNKGCPLEA-SFTPDSKY-VI 256 (335)
Q Consensus 186 ~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~--~~~~~~~~v~~~-~~sp~~~~-l~ 256 (335)
..+... .......++++++|++..|++...++.+..+|+.+... +. +. +....-..+-.+ .--.+|+. |+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEE
Confidence 212111 11123457999999999999987789999999884322 11 11 111111112232 33346776 55
Q ss_pred EEeCCCcEEEEECCC
Q psy16316 257 SGSTDGRIHIWNAEK 271 (335)
Q Consensus 257 tgs~dg~v~iwd~~~ 271 (335)
+.+..+.+.+.+...
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 555566555555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0038 Score=53.65 Aligned_cols=165 Identities=13% Similarity=0.168 Sum_probs=102.5
Q ss_pred CCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCceeEEEecCC---------cceEEE---CCCCCEEEEEEc------
Q psy16316 108 KKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGS---------RPIAAF---DPEGLIFGVGVN------ 168 (335)
Q Consensus 108 ~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~------ 168 (335)
.--.++.|++....+.-++ ..++|..||...+....+ ...+. ..-+.+ +|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3345889988655555554 899999999875543333 22221 124567 688888776432
Q ss_pred -------CCeEEEEEcc---CCCCCceeeEEecc-C-------CCccceEEEEccCCCEEEEEeCC-CeEEEEECCCCee
Q psy16316 169 -------SDTIKLYDVR---SFDKGPFSNFKFAA-E-------KECDWTGIKFSADGKYILISTNG-SIIRTFDAYNGQC 229 (335)
Q Consensus 169 -------d~~v~iwd~~---~~~~~~~~~~~~~~-~-------~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~~~~~~ 229 (335)
+..+..+|+. +.+......+.... + .....+.++.+++|+.-++.+.. +.|..++.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 5789999987 43221111111001 0 11235789999999988888888 888888776442
Q ss_pred eeeec-cc--ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 230 LQTLA-GF--LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 230 ~~~~~-~~--~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
...+. .. .........++++|+|+.|++...+|.+..+|+.+...
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence 22221 11 11112245799999999888777799999999875433
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.026 Score=54.90 Aligned_cols=243 Identities=13% Similarity=0.115 Sum_probs=136.1
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceE
Q psy16316 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYI 100 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~ 100 (335)
++....+...++++ ....|+..++....... +......+..+++.+.....+.+ ....+.|+.+++... ...
T Consensus 388 ~C~~~~~~p~Ll~a--n~~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~s-D~~~~~I~~~~l~g~~~~~~~~ 463 (791)
T 3m0c_C 388 ACKAVGSIAYLFFT--NRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWS-DLSQRMICSTQLDRAHGVSSYD 463 (791)
T ss_dssp CCEETTSCCEEEEE--CBSSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEE-ETTTTEEEEEEC--------CE
T ss_pred eeeecccccccccc--cccceeEeeccCCccee-eecCCCceEEEeecccCCeeEEe-eccceeEEEEeccCCCCCccee
Confidence 34444443333333 33567777776554332 22233345567776654444443 334677888887653 223
Q ss_pred eeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCC-CCEEEEEEcC-CeEEEEE
Q psy16316 101 RYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPE-GLIFGVGVNS-DTIKLYD 176 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~d-~~v~iwd 176 (335)
..+.........|++.+.+ ++.++-...+.|.+.|+.......++.... ....++++|. +.++.+-... +.|...+
T Consensus 464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 3344344566789998766 566777788999999987654333332221 2235678875 5555555333 6788887
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
+.... ...+ ....-...++|++++.+..|+.+.. ...|..+++........+.. ......+..+++.. +.++
T Consensus 544 ~dG~~---~~~l--v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~-~~lY 616 (791)
T 3m0c_C 544 LNGVD---IYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-DKVF 616 (791)
T ss_dssp TTSCC---EEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-TEEE
T ss_pred cCCCc---eEEE--EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeC-CEEE
Confidence 75321 1111 1111223478999988887777654 46799999865433322221 11122355677643 3566
Q ss_pred EEEeCCCcEEEEECCCCeeEEEe
Q psy16316 256 ISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
++-...+.|...|..++.....+
T Consensus 617 wtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 617 WTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTTCCCCEEE
T ss_pred EEECCCCEEEEEeCCCCcceEEe
Confidence 67667788988887766543333
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00037 Score=67.03 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=126.4
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC----CceEeeecCCCCCeEEEEECC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSP 117 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~ 117 (335)
...|+..++........+. ....+..++|.+.... ++.+....+.|+.+++.. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 3577888877654433222 2233455667655444 333434467788888765 222222222223456788875
Q ss_pred C-CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcC-CeEEEEEccCCCCCceeeEEeccC
Q psy16316 118 I-DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNS-DTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 118 ~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
. ++++++-...+.|.+.|+.......++... .....++++|. +.++++-... +.|..+++..... ..+ ...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l--~~~ 537 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL--VTE 537 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEE--SCS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEE--EeC
Confidence 4 556677667889999998765433222211 12234677874 4555544332 6777766643211 111 111
Q ss_pred CCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 194 KECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.-...++|+++|++..|+.+. ..+.|..+++.... .+.+.........+..+++..+ .++++....++|..++..++
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 112236799999876666554 45689999986432 2233221112233556777654 56677777889999998888
Q ss_pred eeEEEeC
Q psy16316 273 FKVCVLD 279 (335)
Q Consensus 273 ~~~~~~~ 279 (335)
.....+.
T Consensus 616 ~~~~~i~ 622 (699)
T 1n7d_A 616 SDVNLLA 622 (699)
T ss_dssp EEEECCC
T ss_pred CceEEee
Confidence 7666553
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.026 Score=51.47 Aligned_cols=242 Identities=9% Similarity=0.072 Sum_probs=134.2
Q ss_pred EEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCC---CCCeEEEEE-------CCCCCEEEEeeCCC-------c
Q psy16316 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH---TKKVNSLCL-------SPIDDTFISGSYDK-------T 130 (335)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H---~~~V~~~~~-------~~~~~~l~s~s~D~-------~ 130 (335)
.+++.|.....++++....+.|++.|++.+........- ......++| +++++.|+.+...+ .
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~ 222 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPS 222 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCce
Confidence 456665322333443333467888888887766554332 235889999 99998555554443 3
Q ss_pred EEEeecCC-CCce-----eEE-EecCCcceEEECC-CCCEEEEEEcCCeEEEEEcc-------CCCC-Cc--------ee
Q psy16316 131 VRLWDLRS-PNCQ-----GIM-HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVR-------SFDK-GP--------FS 186 (335)
Q Consensus 131 i~vWd~~~-~~~~-----~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~-------~~~~-~~--------~~ 186 (335)
|.+.+... +... ..+ ...+ ...++++| ++.++++...++.|..+|+. .... .+ ..
T Consensus 223 V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 223 VYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred EEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 66676433 1221 122 1222 23457788 67788888888999999987 3221 00 11
Q ss_pred eEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEEC--CCCee--eeeeccccc------------CCCCce-EEEE
Q psy16316 187 NFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDA--YNGQC--LQTLAGFLN------------NKGCPL-EASF 248 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~--~~~~~--~~~~~~~~~------------~~~~v~-~~~~ 248 (335)
.+. ..........++|+|++++|+++. ....|+.++. ..+.. ...+.+..+ .-..+. .++.
T Consensus 302 ~l~-~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 302 QLF-TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEE-ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred eeE-ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 111 111122236799999999766554 5567888654 33321 122322111 112344 3455
Q ss_pred c-------CCCcEEEEEeCCCcEEEEECCCCeeEEEeCC------------CC----------CCCeEEEEeCCC-CcEE
Q psy16316 249 T-------PDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------------DH----------PSPVQTIQFNPK-FNMM 298 (335)
Q Consensus 249 s-------p~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~------------~h----------~~~v~~v~~sp~-~~~~ 298 (335)
. +++.++++=..+.+|+.++ .++........ +. -..=..|++.|+ +.+.
T Consensus 381 d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ly 459 (496)
T 3kya_A 381 KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFY 459 (496)
T ss_dssp ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEE
T ss_pred ccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEE
Confidence 4 5677777777888999998 45643222211 10 012357899996 7776
Q ss_pred EeeeceeEEecccc
Q psy16316 299 ASACTNLAFWIPTY 312 (335)
Q Consensus 299 ~s~~~~~~~w~~~~ 312 (335)
++-..+-+|+..+.
T Consensus 460 VaD~~N~rIrki~~ 473 (496)
T 3kya_A 460 VHDQVGHTIRTISM 473 (496)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEEC
Confidence 66655545544333
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.66 E-value=0.023 Score=48.92 Aligned_cols=205 Identities=7% Similarity=-0.016 Sum_probs=119.7
Q ss_pred CCeEEEEEcCCCc--eEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCcee-EEEec-CCcceEEECC-C
Q psy16316 86 DDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQG-IMHVS-GSRPIAAFDP-E 159 (335)
Q Consensus 86 d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~-~~~~~-~~~~~~~~~~-~ 159 (335)
...|+..+++... ....+. ....+..++|++. +.+.++-...+.|..+++....... +.... .....+++++ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4578888887653 222222 2345668999985 5566777778899999987653222 22211 1223466775 5
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC--CCeEEEEECCCCeeeeeecccc
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN--GSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++++.+-...+.|.++++.... ...+. ...-....+++++|.+..|+.+.. .+.|..+++.... .+.+..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~---~~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-- 162 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSL---RKVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN-- 162 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCS---CEEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC--
T ss_pred CeEEEEECCCCEEEEEECCCCc---EEEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE--
Confidence 6677777777899999886421 11111 112223478999998777777663 4678888876432 222211
Q ss_pred cCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 238 NNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.....+..++++|++. ++++=+..++|+.+|.....+...... ....-..+++..+ .++.+-
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~P~glav~~~-~lywtd 225 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFED-ILYWTD 225 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-CCSCEEEEEEETT-EEEEEE
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC-CCCCceEEEEeCC-EEEEEe
Confidence 1234578899999655 555556678899999864333333321 1223346666543 344443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.031 Score=48.85 Aligned_cols=242 Identities=12% Similarity=0.118 Sum_probs=122.4
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee------cccccceEEEEecC---CCeeEEe
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF------SKKYGVDLIRFTHA---KQAAIHA 81 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~ 81 (335)
|++.....+ -.....++|.|+|.++++- .+|.|++++ .++. ..+. ........+++.++ ....+++
T Consensus 21 ~~~~~va~~-l~~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 21 LRVEEVVGG-LEVPWALAFLPDGGMLIAE-RPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CCEEEEECC-CSCEEEEEECTTSCEEEEE-TTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred cEEEEEECC-CCCceEEEEcCCCeEEEEe-CCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 444444444 3456799999999966654 569999998 3332 1111 11345677888876 3333333
Q ss_pred ecCC-C---CeEEEEEcCCCc------eEeeec---CCCCCeEEEEECCCCCEEEEeeC-------------CCcEEEee
Q psy16316 82 STKI-D---DTVRYLSLHDNK------YIRYFP---GHTKKVNSLCLSPIDDTFISGSY-------------DKTVRLWD 135 (335)
Q Consensus 82 ~~~~-d---~~i~~~~~~~~~------~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~-------------D~~i~vWd 135 (335)
.... + +.|..+++..+. .+..+. +.......++|.|+|.+.++.+. .+.|.-+|
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 2211 1 566667766431 122233 11123368999999987777542 14555555
Q ss_pred cCCC------------CceeEEEecCC-cceEEECC-CCCEEEEEEcCCe--------EEEEEccCCCCCc---------
Q psy16316 136 LRSP------------NCQGIMHVSGS-RPIAAFDP-EGLIFGVGVNSDT--------IKLYDVRSFDKGP--------- 184 (335)
Q Consensus 136 ~~~~------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~d~~--------v~iwd~~~~~~~~--------- 184 (335)
.... ....++..... ..-++++| ++.++++-...+. |.+......-.-+
T Consensus 176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCC
Confidence 4420 01112211111 22367888 6777766543332 4333211100000
Q ss_pred --eeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee---eeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 185 --FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC---LQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
....... .......+++| .+|..+++...++.|...++..... .............+..+++.|||.++++..
T Consensus 256 ~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 256 RYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 0000000 11112356777 5677766666677788777654321 111111112234578899999998776654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.029 Score=48.15 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=119.2
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCC---cceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELG---TNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
...+..+.|++.+ .++.+-...+.|..+|.+.. .....+.. .-.....+++.+.....+ .+....+.|.+.+++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly-~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY-WTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEE-EEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEE-EEECCCCEEEEEeCC
Confidence 3456799999865 45556667799999998761 22222222 223456677765444433 333457889999987
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCE-EEEeeCC-CcEEEeecCCCCceeEEEecC-CcceEEECCCC-CEEEEEEcCCe
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYD-KTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEG-LIFGVGVNSDT 171 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D-~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~d~~ 171 (335)
.......+.........+++.|.+.. +++-... +.|...++............. ....+++++++ .++.+-+..+.
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 65443334433456789999986554 4554333 688888875433222211111 12356788754 55566666789
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
|..+|+.... ...+...........++++. .+...++....+.|..++..+++..+.+.
T Consensus 188 I~~~d~dg~~---~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 188 ISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEecCCCc---eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 9999986421 11221111111223567775 34444555566789999988877665553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.066 Score=52.04 Aligned_cols=208 Identities=12% Similarity=0.075 Sum_probs=118.6
Q ss_pred CCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCc---ceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 20 NTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGT---NKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 20 h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
....+..++|++. +.++.+-...+.|+.+++.... ....+.. .......+++.+.....+. +-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~-tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEE-EecCCCeEEEEeC
Confidence 3456778999985 4555666677889888886531 1222222 3344566777665544444 4445778999998
Q ss_pred CCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCC-CcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcCC
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYD-KTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNSD 170 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~ 170 (335)
........+.........|++.|.+ .+++|-... +.|...++.......++... ..-..+++++. +.++++-...+
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 7655444444445568899999874 455554333 78888888654433332211 11234677754 55566656667
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeee
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~ 233 (335)
.|..+++..... ..+......-....+|++ .+..|+.+. ..+.|...+..+++....+
T Consensus 581 ~I~~~d~dG~~~---~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 581 SISSIDVNGGNR---KTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTSCSC---EEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cEEEEecCCCce---EEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 899998864221 111111111111234555 444555554 5577888888887665555
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.53 E-value=0.044 Score=48.78 Aligned_cols=211 Identities=12% Similarity=0.078 Sum_probs=119.4
Q ss_pred cCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCc---ceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGT---NKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...+.+..++|++.+. ++.+-...+.|+.++++... ....+.. .......+++.+.....+. +....+.|.+.+
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~-~d~~~~~I~~~~ 187 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVAD 187 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEE-EETTTTEEEEEC
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEE-EECCCCeEEEEe
Confidence 3456688999998554 55555567889889886522 1222222 2234556666654444333 334467888888
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeC-CCcEEEeecCCCCceeEEEec-CCcceEEECCCC-CEEEEEEcC
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSY-DKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEG-LIFGVGVNS 169 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~-D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~d 169 (335)
++.......+.........+++.|.+. +++|-.. .+.|...++............ .....+++++++ .++.+-...
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 876654444444445678999998654 4455423 478888888654333222211 112346788654 455555667
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+.|..+|+..... ..+......-....++++. .+..+.+....+.|..+|..+++....+.
T Consensus 268 ~~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 268 HSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TEEEEEETTSCCC---EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CEEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 8899999864221 1121111111122456662 33344445556778889988887666654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.04 Score=47.77 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=112.2
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC----C---E-EEEeeC--CCcEEEeecC--CCCceeEEE
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID----D---T-FISGSY--DKTVRLWDLR--SPNCQGIMH 146 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~----~---~-l~s~s~--D~~i~vWd~~--~~~~~~~~~ 146 (335)
++++. ..+.+.+||+ .++.++.+.. +.++.+..-|.- + + ++|.-. +++|+++++. ++.....-.
T Consensus 43 ii~t~-k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 43 LITTN-KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEE-TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEc-CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 34443 3578999999 8888888864 567777776632 1 2 333333 5899999774 332211100
Q ss_pred ----e-c--CCcceEEE--CCC-CC-EEEEEEcCCeEEEEEccCCCCCce-ee--EEeccCCCccceEEEEccCCCEEEE
Q psy16316 147 ----V-S--GSRPIAAF--DPE-GL-IFGVGVNSDTIKLYDVRSFDKGPF-SN--FKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 147 ----~-~--~~~~~~~~--~~~-~~-~~~~~~~d~~v~iwd~~~~~~~~~-~~--~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
. . ....-+++ +|. +. ++.+...++.+..|++.....+.. .. ..+.. ..+..++..++....|++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEE
Confidence 0 0 11122444 563 44 566677789999999854222111 11 11111 234567888998999999
Q ss_pred EeCCCeEEEEECC-----CCeeeeeecccccCCCCceEEEE--cCCCc-EEEEEe-CCCcEEEEECC-CCeeEEEe
Q psy16316 213 STNGSIIRTFDAY-----NGQCLQTLAGFLNNKGCPLEASF--TPDSK-YVISGS-TDGRIHIWNAE-KGFKVCVL 278 (335)
Q Consensus 213 ~~~~~~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~~~~--sp~~~-~l~tgs-~dg~v~iwd~~-~~~~~~~~ 278 (335)
+-++.-|..|+.+ +++.+..+.. ..-...+..+++ .++++ +|++.+ .+.++.+||.. +...+..+
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 9999888888855 3444443321 111224566776 56655 555555 57789999996 44433333
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.48 E-value=0.041 Score=47.33 Aligned_cols=227 Identities=9% Similarity=0.067 Sum_probs=129.4
Q ss_pred CCeEEEEEccCCcc-eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE-eeecCCCCCeEEEEECC-C
Q psy16316 42 DDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI-RYFPGHTKKVNSLCLSP-I 118 (335)
Q Consensus 42 Dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~H~~~V~~~~~~~-~ 118 (335)
...|+..|++.... ...+.........+.|.+.....+ .+-...+.|..+++..+... ..+.........+++.+ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~ly-w~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIY-WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEE-EEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEE-EEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 46888888876642 112222222344566766444433 33344677888888765321 12222234566788886 4
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 119 ~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
+++.++-...+.|.+.|+............ .....++++|. +.++.+-. ..+.|...++.... ...+ ....-
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~--~~~~l 165 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFII--INSEI 165 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEE--ECSSC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEE--EECCC
Confidence 556677777889999998754333222111 11234577775 44555443 35678877765311 1111 11111
Q ss_pred ccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 196 CDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
...++++++|++..|..+. ..+.|..+|..... .+.+.. .....+..+++.. +.++.+-...+.|..++..++..
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 2347899999877777664 45789999986432 222221 1234567788753 46677777788999999877654
Q ss_pred EEEe
Q psy16316 275 VCVL 278 (335)
Q Consensus 275 ~~~~ 278 (335)
...+
T Consensus 242 ~~~i 245 (318)
T 3sov_A 242 LREI 245 (318)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 3333
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.037 Score=48.32 Aligned_cols=194 Identities=11% Similarity=0.147 Sum_probs=107.0
Q ss_pred EEEECCCCCEEEEec------------CCCeEEEEEccCC--ccee-eeec-----ccccceEEEEecC--CCe-eEEee
Q psy16316 26 SIDYSADGLLLISCS------------EDDQIVIYDCELG--TNKR-TVFS-----KKYGVDLIRFTHA--KQA-AIHAS 82 (335)
Q Consensus 26 ~v~~s~~g~~lasgs------------~Dg~i~lwd~~~~--~~~~-~~~~-----~~~~~~~~~~~~~--~~~-~~~~~ 82 (335)
.+...|+|..+++++ .+|.|.++|.++. +... .+.+ ..+....+.+..+ +.. .+++-
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn 133 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 133 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence 455688887666663 7999999998743 2111 1211 1233444555442 332 33332
Q ss_pred cC-CCCeEEEEEcCCC-c---eEeeecCCC-CCeEEEEECCCCCEEEEeeC-----------------CCcEEEeecCCC
Q psy16316 83 TK-IDDTVRYLSLHDN-K---YIRYFPGHT-KKVNSLCLSPIDDTFISGSY-----------------DKTVRLWDLRSP 139 (335)
Q Consensus 83 ~~-~d~~i~~~~~~~~-~---~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~-----------------D~~i~vWd~~~~ 139 (335)
.. .+.++.+|+++.. . .+..+.+.. ...+.+.+.++|.+.++... .+.|..+|. +
T Consensus 134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~ 211 (355)
T 3sre_A 134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N 211 (355)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence 22 3678888887653 2 233454432 45789999999988777541 244555554 3
Q ss_pred CceeEEEecCCcceEEECCCCCEEEEE-EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCC-
Q psy16316 140 NCQGIMHVSGSRPIAAFDPEGLIFGVG-VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNG- 216 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~- 216 (335)
++..+...-....-++++|+++.+.++ +..+.|..|++... +........ ........+++++ +|++.+++..+
T Consensus 212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~--g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN--WTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC--CcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 333222222233457899999765554 55789999998642 222222111 1123346788999 58877765433
Q ss_pred CeEEEEEC
Q psy16316 217 SIIRTFDA 224 (335)
Q Consensus 217 ~~i~i~d~ 224 (335)
..|..|+.
T Consensus 289 ~~v~~~~P 296 (355)
T 3sre_A 289 MRIFFYDA 296 (355)
T ss_dssp HHHHSCCT
T ss_pred eEEEEECC
Confidence 33433443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.005 Score=59.17 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=114.8
Q ss_pred ccEEEEEECCCCCEEE-EecCCCeEEEEEccCC---cceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 22 DKITSIDYSADGLLLI-SCSEDDQIVIYDCELG---TNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 22 ~~V~~v~~s~~g~~la-sgs~Dg~i~lwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
..+..++|++.+..|. +-...+.|+.+++... .....+. ........+++.+..... +.+....+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L-Y~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI-YWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC-EECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE-EEEeccCCeEEEEecCC
Confidence 3456888998665544 4456788999998751 1111111 111233445555433333 33334567888888876
Q ss_pred CceEeeecCCCCCeEEEEECCCC-CEEEEeeCC-CcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcCCeE
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPID-DTFISGSYD-KTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNSDTI 172 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~v 172 (335)
......+.........+++.|.+ .++++-... +.|...++.......+.... .....++++|+ +.++++-+..+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 55444443333456788999865 445554333 78888887543222111111 11234788876 5677777777899
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
..+|+..... ..+...........+|++..+ .++++....+.|..++..+++.++.+.
T Consensus 565 ~~~d~dG~~~---~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 565 SSIDVNGGNR---KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEECSSSSCC---EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEccCCCce---EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 9999864211 111110011111234666543 333444556789999998888776664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.055 Score=47.26 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=121.5
Q ss_pred ccceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeee-------ecccccceEEEEecC---CCeeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTV-------FSKKYGVDLIRFTHA---KQAAI 79 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~ 79 (335)
|++.....+ -.....+.|.|+|+ ++++ ...|.|++++.+ +.....+ .....+...+++.++ ....+
T Consensus 8 ~~~~~va~~-l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 8 VNVEVLQDK-LDHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp SEEEEEEEE-ESSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred cEEEEEECC-CCCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 444333333 34568999999999 6655 457999999853 2211111 111234567788775 23333
Q ss_pred EeecC--C----CCeEEEEEcCCC--c--eEe----eecC---CCCCeEEEEECCCCCEEEEeeCC-------------C
Q psy16316 80 HASTK--I----DDTVRYLSLHDN--K--YIR----YFPG---HTKKVNSLCLSPIDDTFISGSYD-------------K 129 (335)
Q Consensus 80 ~~~~~--~----d~~i~~~~~~~~--~--~~~----~~~~---H~~~V~~~~~~~~~~~l~s~s~D-------------~ 129 (335)
++... . ...|..+++... + ..+ .+.. ....-..+.|.|+|.+.++.+.. +
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g 164 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQG 164 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCe
Confidence 32211 1 224555555432 1 111 1221 11123579999999777765432 4
Q ss_pred cEEEeecCCCC------------ceeEEEecCC-cceEEECC-CCCEEEEEEc-C--CeEEEEEccCCCCCceee-----
Q psy16316 130 TVRLWDLRSPN------------CQGIMHVSGS-RPIAAFDP-EGLIFGVGVN-S--DTIKLYDVRSFDKGPFSN----- 187 (335)
Q Consensus 130 ~i~vWd~~~~~------------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-d--~~v~iwd~~~~~~~~~~~----- 187 (335)
.|.-.|....- ...++..... ..-++|+| ++.++++-.. + ..|.+......-.-+...
T Consensus 165 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~ 244 (353)
T 2g8s_A 165 KLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINY 244 (353)
T ss_dssp EEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCT
T ss_pred EEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCC
Confidence 56666654320 1122222211 23467888 6666665322 1 123221110000000000
Q ss_pred ---------------EE---eccCCCccceEEEEcc-------CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 188 ---------------FK---FAAEKECDWTGIKFSA-------DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 188 ---------------~~---~~~~~~~~~~~~~~s~-------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+. ..........+++|.. ++.++++...++.|...++..++......-.......
T Consensus 245 ~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 324 (353)
T 2g8s_A 245 SGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQR 324 (353)
T ss_dssp TSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCC
T ss_pred CCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCc
Confidence 00 0000112345677753 5777777777788888888765433221111122345
Q ss_pred ceEEEEcCCCcEEEEEe-CCCcE
Q psy16316 243 PLEASFTPDSKYVISGS-TDGRI 264 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs-~dg~v 264 (335)
+..+++.|||.++++.. .+|+|
T Consensus 325 p~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 325 IRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEEEECTTSCEEEEECSTTEEE
T ss_pred eeEEEECCCCcEEEEEeCCCCEE
Confidence 78899999998766533 34544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.12 Score=48.99 Aligned_cols=201 Identities=7% Similarity=-0.025 Sum_probs=117.9
Q ss_pred ccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 22 DKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 22 ~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
..+..++|++.+. ++.+-..++.|+.++++.......+.........+++.+.....+. +-...+.|.+.+++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~-tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYW-ADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSTTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEE-EECCCCEEEEEecCCCcEE
Confidence 4578999998655 4556667899999998754333222222234566777655444443 3345678899998765433
Q ss_pred eeecCCCCCeEEEEECCC-CCEEEEe-eCCCcEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEEcCCeEEEEEc
Q psy16316 101 RYFPGHTKKVNSLCLSPI-DDTFISG-SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~-~~~l~s~-s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwd~ 177 (335)
..+...-.....+++.|. |.+.+|- +..+.|...++.......+......-..++++++ +.++.+-...+.|..+|+
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 333344456789999985 4455553 2356788888765443333321112234678885 455666666788999998
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
..... ..+... -....++++.. +...++-...+.|...|..+++..
T Consensus 196 dG~~~---~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 196 LGLNR---EVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp TSCSC---EEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCce---EEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 65322 111111 11224677754 333344445678888887776543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.13 Score=44.94 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=101.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEee------------CCCcEEEeecCCC--CceeEEEecC--------CcceEEEC--C
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGS------------YDKTVRLWDLRSP--NCQGIMHVSG--------SRPIAAFD--P 158 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s------------~D~~i~vWd~~~~--~~~~~~~~~~--------~~~~~~~~--~ 158 (335)
+++-......+...|+|..+++++ .+|.|.++|..+. +.. .+...+ ...-+.+. .
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECC
Confidence 444223445666778775555542 7999999998743 322 222222 11112222 2
Q ss_pred CCC--EEEEEEc--CCeEEEEEccCCCCCceeeEEec-cCCCccceEEEEccCCCEEEEEe-----------------CC
Q psy16316 159 EGL--IFGVGVN--SDTIKLYDVRSFDKGPFSNFKFA-AEKECDWTGIKFSADGKYILIST-----------------NG 216 (335)
Q Consensus 159 ~~~--~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~-----------------~~ 216 (335)
++. ++++-.. +.++.+|++..... ...-.... ...-...+.+.+.++|.+.++.. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 343 4444332 46788888765322 11111111 12223357899999998776654 12
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE-EeCCCcEEEEECCC-Cee--EEEeCCCCCCCeEEEEeC
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS-GSTDGRIHIWNAEK-GFK--VCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t-gs~dg~v~iwd~~~-~~~--~~~~~~~h~~~v~~v~~s 292 (335)
+.|..+|. +++ +.+. .....+..++|+||++.|.. -+..++|+.|++.. +.. ...+. .++.--.+++.
T Consensus 203 g~vyr~d~--~~~-~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD 274 (355)
T 3sre_A 203 SFVTYYSP--NDV-RVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVD 274 (355)
T ss_dssp EEEEEECT--TCC-EEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEEC
T ss_pred cEEEEEEC--CeE-EEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEe
Confidence 44555555 322 2221 12244678999999976554 45678899999853 321 12221 23444567888
Q ss_pred C-CCcEEEee
Q psy16316 293 P-KFNMMASA 301 (335)
Q Consensus 293 p-~~~~~~s~ 301 (335)
+ +|++.+++
T Consensus 275 ~e~G~lwva~ 284 (355)
T 3sre_A 275 PVTGDLWVGC 284 (355)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCcEEEEe
Confidence 8 58877655
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.15 Score=44.51 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=124.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee------cccccceEEEEecC---CCeeEEe
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF------SKKYGVDLIRFTHA---KQAAIHA 81 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~ 81 (335)
|++.....+ -.....++|.|+|.++++- .+|.|+++|. .+. ..+. ........+++.++ ....+++
T Consensus 19 ~~~~~va~~-l~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 19 FKISEVASD-LEVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp EEEEEEECS-CSCEEEEEEEETTEEEEEE-TTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred eEEEEEeCC-CCCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 444443333 4457899999999866654 5599998873 444 2221 12244677888776 3333333
Q ss_pred ecC--CC----CeEEEEEcCCC-------ceE-eeecC-CCCCeEEEEECCCCCEEEEeeC-------------CCcEEE
Q psy16316 82 STK--ID----DTVRYLSLHDN-------KYI-RYFPG-HTKKVNSLCLSPIDDTFISGSY-------------DKTVRL 133 (335)
Q Consensus 82 ~~~--~d----~~i~~~~~~~~-------~~~-~~~~~-H~~~V~~~~~~~~~~~l~s~s~-------------D~~i~v 133 (335)
... .+ +.|..+++... +.+ ..+.. ....-..+.|.|+|.+.++.+. .+.|..
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 221 12 45666666543 111 11221 1123467999999988887543 244555
Q ss_pred eecCCCC-------ceeEEEecC-CcceEEECC-CCCEEEEEEcCC---eEEEEEccCCCCCc-----------eeeEEe
Q psy16316 134 WDLRSPN-------CQGIMHVSG-SRPIAAFDP-EGLIFGVGVNSD---TIKLYDVRSFDKGP-----------FSNFKF 190 (335)
Q Consensus 134 Wd~~~~~-------~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~d~---~v~iwd~~~~~~~~-----------~~~~~~ 190 (335)
.|....- ...++.... ...-++++| ++.++++-...+ .|.+......-.-+ ......
T Consensus 174 i~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred EcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 5543210 011221111 123468888 677776643222 34433211100000 000000
Q ss_pred ccCCCccceEEEE-------ccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc-cCCCCceEEEEcCCCcEEEEEe
Q psy16316 191 AAEKECDWTGIKF-------SADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL-NNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 191 ~~~~~~~~~~~~~-------s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.........+++| ..+|.++++...++.|..+++............. .....+..+++.|||.++++..
T Consensus 254 ~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 254 TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0011223467888 3678777777777888888887532111111111 1234578899999998777664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.26 Score=46.54 Aligned_cols=221 Identities=10% Similarity=0.061 Sum_probs=132.3
Q ss_pred CCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC
Q psy16316 41 EDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 41 ~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~ 119 (335)
....|+.-|+++......+.. .-.....++|.+.....+. +...++.|..+++........+.........+++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lyw-tD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYW-TDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEE-EECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 457888888876543322221 1234566777776554443 33457788888887654444444333456788888654
Q ss_pred -CEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECC-CCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 120 -DTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDP-EGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 120 -~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
++.++-...+.|.+.|+............ ..-..++++| .|.++.+-. ..+.|...++.... ...+. ..-
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l~---~~~ 165 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTLV---PNV 165 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEE---CSC
T ss_pred CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEEE---CCC
Confidence 56677777889999998754433222111 1123467787 455655543 25677777765321 11111 112
Q ss_pred ccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 196 CDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
...+++++++++..|..+.. .+.|..+|+..... +.+.. ....+..+++.. +.+++|-...+.|...|..++.
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 23478999998887776654 56799999875433 33322 223466788765 5666776678889999976664
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.17 Score=44.95 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=90.0
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-----CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC--------
Q psy16316 117 PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-----SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG-------- 183 (335)
Q Consensus 117 ~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-------- 183 (335)
.++..++.+ .++.||+=++.....-+.++... .+.-+.++|+|.++|..+. .+|.+..+......
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 345555554 35777777776443333444432 2344789999999998854 68999888732111
Q ss_pred ceeeEEeccC-----CCccceEEEEccC---CCEEEEEeCCCeEEEEECCCCee-eeeec------ccccCCCCceEEEE
Q psy16316 184 PFSNFKFAAE-----KECDWTGIKFSAD---GKYILISTNGSIIRTFDAYNGQC-LQTLA------GFLNNKGCPLEASF 248 (335)
Q Consensus 184 ~~~~~~~~~~-----~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~~~~-~~~~~------~~~~~~~~v~~~~~ 248 (335)
+.....+..+ ....+..+-|+|- +..|++=+.|+.|++||+..... ...+. +.......+.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1111111111 2346788999985 45889999999999999975221 11121 11112245778999
Q ss_pred cCCCcEEEE--EeCCCcEEEE
Q psy16316 249 TPDSKYVIS--GSTDGRIHIW 267 (335)
Q Consensus 249 sp~~~~l~t--gs~dg~v~iw 267 (335)
++++-.|.. .+.+|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 997754444 5588888654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.17 Score=42.69 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=110.3
Q ss_pred CCCCEEEEec-CC-----CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCCC-----CeEEEEEcCCC
Q psy16316 31 ADGLLLISCS-ED-----DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKID-----DTVRYLSLHDN 97 (335)
Q Consensus 31 ~~g~~lasgs-~D-----g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~ 97 (335)
.++.+++.|+ .+ ..+.+||..+.+-... ..........+. . .+. +++.++.+ +.+.+||+.+.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDR-IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTE-EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCE-EEEEcCCCCCccCceEEEEECCCC
Confidence 4566777777 33 3678889877643221 111111111222 1 222 33333322 46888998776
Q ss_pred c---eEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEE
Q psy16316 98 K---YIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVG 166 (335)
Q Consensus 98 ~---~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (335)
+ -... +......-.++.+ ++..++.|+.+ ..+.++|+.+.+....-...... ...+...++.+++.|
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 166 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG 166 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEEC
T ss_pred CCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEEC
Confidence 5 3222 2211122222222 46677777754 35788888776544332221111 111112256677777
Q ss_pred EcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeeccc
Q psy16316 167 VNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 167 ~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~ 236 (335)
+.+ ..+..||+.+. .................+. .++..++.++.+ ..+.+||+.+.+.... ...
T Consensus 167 G~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~ 240 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTG---HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSM 240 (301)
T ss_dssp CBCSSCBCCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-CCC
T ss_pred CCCCCcccceEEEEeCCCC---cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-CCC
Confidence 643 46788887642 2332221111111112222 255666665542 4689999988764332 111
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
........ + ...++++++.|+.+ ..+.+||..+.
T Consensus 241 p~~r~~~~-~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTPRCYVG-A-TVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSCCBSCE-E-EEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCccccee-E-EEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11111111 2 22367788888866 35778887654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.35 Score=45.63 Aligned_cols=227 Identities=9% Similarity=0.078 Sum_probs=121.5
Q ss_pred CCeEEEEEccCCcc-eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce-EeeecCCCCCeEEEEECCC-
Q psy16316 42 DDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-IRYFPGHTKKVNSLCLSPI- 118 (335)
Q Consensus 42 Dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~H~~~V~~~~~~~~- 118 (335)
...|+.-|++.... ...+...-.....+++.+.....+.+. ...+.|..++++.... ...+.........+++.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD-~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEE-TTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEE-CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35666666654321 111112223345666766555444333 3456777777765432 2233333356789999985
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 119 ~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
+++.++-...+.|.+.|+.......+.... ..-..++++|. |.++.+-.. ...|...++.... ...+. ...-
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~---~~~l~--~~~~ 170 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIII--NSEI 170 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEE--CSSC
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc---eEEEE--eCCC
Confidence 456677777899999998765443333111 11234677775 555555432 3566666654311 11111 1112
Q ss_pred ccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 196 CDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
...+++++++++..|..+.. .+.|..+|+........+.+ ....+..+++..+ ..+++-...+.|...|..++..
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC---CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 23478999998777776644 46788888865433222221 1233556888766 6666766788899999877754
Q ss_pred EEEe
Q psy16316 275 VCVL 278 (335)
Q Consensus 275 ~~~~ 278 (335)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 4333
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.45 Score=44.91 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=72.2
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
......+++++.+ ++.++-...+.|.+.|++.... +.+. ..-.....+++.+.....+....+....|...+++...
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 3567899999855 4566666789999999875433 3333 33344667777776555555443334567666665443
Q ss_pred eEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCC
Q psy16316 99 YIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~ 138 (335)
........-...+.+++.+++ ++.++=+..+.|...|+..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 333333334456788998864 4455555667788887754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.26 Score=41.59 Aligned_cols=226 Identities=10% Similarity=0.092 Sum_probs=109.4
Q ss_pred CCEEEEecC--CCeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCC----CCeEEEEEcCCCceEee--
Q psy16316 33 GLLLISCSE--DDQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKI----DDTVRYLSLHDNKYIRY-- 102 (335)
Q Consensus 33 g~~lasgs~--Dg~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~~~~~~~~~~~~~-- 102 (335)
+.+++.||. ...+.+||..+.+-... ..........+.. ... +++.++. -+.+..||+.+++-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 445666664 36788899887653221 1111111122221 222 3333333 36678889887654332
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEc-------
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVN------- 168 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 168 (335)
++.-...-..+.+ ++.+++.|+.+ ..+.++|..+.+....-...... ...+...++.+++.|+.
T Consensus 88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcc
Confidence 2211111122222 56677888776 56888898776533221111111 11111225666666653
Q ss_pred --CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecccccCCC
Q psy16316 169 --SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 169 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
...+.+||+.+. .................+.+ +++.++.|+.+ ..+.+||+.+.+-... ........
T Consensus 166 ~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~ 239 (306)
T 3ii7_A 166 RVLNSCEVYDPATE---TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SPMPWKGV 239 (306)
T ss_dssp EECCCEEEEETTTT---EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CCCSCCBS
T ss_pred cccceEEEeCCCCC---eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CCCCCCcc
Confidence 345778887642 23322211111111112222 55555555432 4588999987754322 11111111
Q ss_pred CceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 242 CPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
....+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1222233 67888888854 45888888764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.15 Score=40.99 Aligned_cols=182 Identities=9% Similarity=0.002 Sum_probs=93.9
Q ss_pred CEEEEeeCCCcEEEeecCCCCc------eeEEEe--cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeE--E
Q psy16316 120 DTFISGSYDKTVRLWDLRSPNC------QGIMHV--SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF--K 189 (335)
Q Consensus 120 ~~l~s~s~D~~i~vWd~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~ 189 (335)
.+|.....| +++.=....... ...+.. -.....++|+|+|.++++ .++.+.-.+..+......... .
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 456666666 555544433321 111111 123457899999999988 566655555432111111000 0
Q ss_pred eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc--ccc--CCCCceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG--FLN--NKGCPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 190 ~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~--~~~~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
.-...-.....+.|+|+|.+-++ .|+.|+-++..+...-.-+.. ... .=..+..+.|.|+|.+.+.. |++++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 00000111367899999988777 447887777644222111110 000 00134678999999888887 77765
Q ss_pred EEECCCCe------eEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 266 IWNAEKGF------KVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 266 iwd~~~~~------~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
-+....+. ....+....-..-.-+.|.|++.+.+.. +.++|-.
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~~ 206 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYED 206 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEec
Confidence 54433110 1111111122234457799999887776 4466643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.39 Score=40.39 Aligned_cols=227 Identities=11% Similarity=0.195 Sum_probs=107.4
Q ss_pred CCCEEEEecCC----CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCCC-----CeEEEEEcCCCceE
Q psy16316 32 DGLLLISCSED----DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKID-----DTVRYLSLHDNKYI 100 (335)
Q Consensus 32 ~g~~lasgs~D----g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~ 100 (335)
++.+++.||.+ ..+.+||..+.+-... ..........+.. ... +++.++.+ +.+.+||+.+.+-.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTE-EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCE-EEEEeCcCCCccccceEEECCCCCcee
Confidence 34566666653 4578888877643221 1111111111211 223 33333322 45778888776533
Q ss_pred ee--ecCCCCCeEEEEECCCCCEEEEeeCCC-----cEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEc----
Q psy16316 101 RY--FPGHTKKVNSLCLSPIDDTFISGSYDK-----TVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVN---- 168 (335)
Q Consensus 101 ~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 168 (335)
.. ++.....-.++.+ ++..++.|+.++ .+.++|+.+.+....-...... ...+...++.+++.|+.
T Consensus 91 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS 168 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred eCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC
Confidence 32 2211111122222 456777777653 5678888765433221111111 01111125566666653
Q ss_pred ---CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecccccCC
Q psy16316 169 ---SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 169 ---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
...+.+||+.+. .................+. .++..++.|+.+ ..+.+||+.+.+... +.......
T Consensus 169 ~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r 242 (302)
T 2xn4_A 169 RQCLSTVECYNATTN---EWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCR 242 (302)
T ss_dssp TEECCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCC
T ss_pred CccccEEEEEeCCCC---cEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCcc
Confidence 235778887642 2222221111111111222 256666665443 468899998875433 21111111
Q ss_pred CCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCC
Q psy16316 241 GCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKG 272 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~ 272 (335)
... .+ ...++++++.|+.++ .+.+||..+.
T Consensus 243 ~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 243 RNA-GV-CAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSC-EE-EEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccC-eE-EEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111 12 223678888888664 4888988765
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.47 Score=40.68 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=114.1
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec---ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
....+..+.|++ +..++ ++.++.|.. ..+.|+.-..+.. ....+..+.+..+. .+++.+. ++.+.. ..+.
T Consensus 78 ~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~g~v~~-S~Dg 150 (327)
T 2xbg_A 78 SDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG--SAEMITN-VGAIYR-TKDS 150 (327)
T ss_dssp CCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT--EEEEEET-TCCEEE-ESST
T ss_pred CCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC--CEEEEeC-CccEEE-EcCC
Confidence 345788999986 44444 455665543 3333332222211 11223444443332 2333332 333321 2222
Q ss_pred Cce-EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 97 NKY-IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 97 ~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
++. .....++...+.++.+.+++..++.+...+..+-+|-....-..... .......+.+.+++.+++++ .++.+.+
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~ 229 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAF 229 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEE
T ss_pred CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEE
Confidence 322 22234556678999999988877766555555555531111111110 11122345567888776544 5677666
Q ss_pred EEccCCCCCceeeEEec-cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 175 YDVRSFDKGPFSNFKFA-AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
.+... .......... ......+..+.+.+++..++++. ++.+ ++....++.-..+.........+..+.|.+++.
T Consensus 230 s~~D~--G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~ 305 (327)
T 2xbg_A 230 SDPDN--SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ 305 (327)
T ss_dssp EETTE--EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred ecCCC--CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence 53110 0011111100 01112356788988888777765 4444 344444443333322111223456788876555
Q ss_pred EEEEEeCCCcEEEEEC
Q psy16316 254 YVISGSTDGRIHIWNA 269 (335)
Q Consensus 254 ~l~tgs~dg~v~iwd~ 269 (335)
++.++.+|.|..++-
T Consensus 306 -~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 -GFILGQKGILLRYVT 320 (327)
T ss_dssp -EEEECSTTEEEEECC
T ss_pred -eEEEcCCceEEEEcC
Confidence 555667888777653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.59 Score=40.36 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=27.0
Q ss_pred eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC------cEEEEECCCCeeEE
Q psy16316 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG------RIHIWNAEKGFKVC 276 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg------~v~iwd~~~~~~~~ 276 (335)
.+.+||+.+.+.... ......... ..+...++++++.|+.++ .|.++++.+++...
T Consensus 286 ~~~~yd~~~~~W~~~-~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKS-GELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEE-EECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeC-CCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 477899886643321 111111111 122335778888888653 35555776655443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.069 Score=42.99 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=76.2
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE----EEe-cCC---cceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI----MHV-SGS---RPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~----~~~-~~~---~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
.+..++|+|++.+.+. .++.+.--+..+.....- .+. ... -..+.++|+|.+.++ .|+.|.-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6669999998875444 677766666544322110 111 001 145789999999988 5688877765322
Q ss_pred CCCceee--EEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec--cccc--CCCCceEEEEcCCCcE
Q psy16316 181 DKGPFSN--FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA--GFLN--NKGCPLEASFTPDSKY 254 (335)
Q Consensus 181 ~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~--~~~~v~~~~~sp~~~~ 254 (335)
....... .......=..+..+.++|+|.+-++. ++.++-....+.....-+. .... .-.....+.|.|++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 1111100 00000011245779999999987777 5555433333222111110 0000 0011223568888877
Q ss_pred EEEEeCCCc
Q psy16316 255 VISGSTDGR 263 (335)
Q Consensus 255 l~tgs~dg~ 263 (335)
++.- ++.
T Consensus 196 ~~v~--~g~ 202 (236)
T 1tl2_A 196 FGVQ--GGK 202 (236)
T ss_dssp EEEE--TTE
T ss_pred EEEe--CCe
Confidence 6665 563
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.76 Score=40.85 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=79.2
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCc-cceEEEEccCCCEEEEEeCCCeEEEEECCCCee--------
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC-DWTGIKFSADGKYILISTNGSIIRTFDAYNGQC-------- 229 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~-------- 229 (335)
++.-++.+ .++.||..++... ..+..++....... .+..+..+|+|++|+..+ ...|.+..+..+..
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~--~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTD--SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTC--SSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEE-ECCEEEEEECCCC--CcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34333333 3467777776532 22323332211122 457799999999999874 55788888773211
Q ss_pred ----eeeecc--c-ccCCCCceEEEEcCCC---cEEEEEeCCCcEEEEECCCCe-eEEEeC--------CCCCCCeEEEE
Q psy16316 230 ----LQTLAG--F-LNNKGCPLEASFTPDS---KYVISGSTDGRIHIWNAEKGF-KVCVLD--------ADHPSPVQTIQ 290 (335)
Q Consensus 230 ----~~~~~~--~-~~~~~~v~~~~~sp~~---~~l~tgs~dg~v~iwd~~~~~-~~~~~~--------~~h~~~v~~v~ 290 (335)
.+.+.- . ......|..+.|||-+ ..|++-..|+.|++||+.... ++..+. ..+...|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 111111 0 0124568889999964 589999999999999998632 111221 12335788889
Q ss_pred eCCCC
Q psy16316 291 FNPKF 295 (335)
Q Consensus 291 ~sp~~ 295 (335)
|.+++
T Consensus 187 Fg~~~ 191 (452)
T 3pbp_A 187 FSKDG 191 (452)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98865
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.63 Score=39.27 Aligned_cols=227 Identities=8% Similarity=0.080 Sum_probs=108.4
Q ss_pred CCCCCEEEEecCC----CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCC---------CCeEEEEEc
Q psy16316 30 SADGLLLISCSED----DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKI---------DDTVRYLSL 94 (335)
Q Consensus 30 s~~g~~lasgs~D----g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~~~~~ 94 (335)
.-++.+++.||.+ ..+.+||..+.+-... ..........+.. ... ++..++. .+.+.+||+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~-lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGL-LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTE-EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE---CCE-EEEECCCcCCCCCCeecceEEEECC
Confidence 3466777777742 4678889877653221 1111111111211 222 3333332 245778888
Q ss_pred CCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCC---cceEEECCCCCEEE
Q psy16316 95 HDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGS---RPIAAFDPEGLIFG 164 (335)
Q Consensus 95 ~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 164 (335)
.+.+-.+. +..-...-.++.+ ++.+++.|+.+ ..+.++|+.+.+....-..... .....+ ++.+++
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 77653322 2211112222222 45677777654 3577888876543322111111 111222 566777
Q ss_pred EEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeec
Q psy16316 165 VGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 165 ~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~ 234 (335)
.|+.+ ..+.+||+.+. .................+.+ ++..++.++.+ ..+.+||+.+.+.... .
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~ 247 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERN---EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV-A 247 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-C
T ss_pred EeCCCCCCcCceEEEEeCCCC---eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-C
Confidence 77643 45788887642 22222111111111122222 56666665443 4689999988754332 1
Q ss_pred ccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 235 GFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 235 ~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
......... .++. -++++++.|+.+ ..+.+||..+.
T Consensus 248 ~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 248 PMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111111111 2222 367888888854 34778887654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.12 Score=45.10 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=76.2
Q ss_pred eEEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEE-eccCCCccceEEEEccC---CCEEEEEe-C-------CCeE
Q psy16316 153 IAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSAD---GKYILIST-N-------GSII 219 (335)
Q Consensus 153 ~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~---~~~l~~~~-~-------~~~i 219 (335)
.+++.|+|+ ++++- ..+.|.+++............. ...........++++|+ +..|.++. . ...|
T Consensus 22 ~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 22 ALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 467899998 66554 5688988874321000111010 00111223478999996 55555442 2 2245
Q ss_pred EEEECCCC--e--eeeee-cccc---cCCCCceEEEEcCCCcEEEEEeCC-------------CcEEEEECCCC------
Q psy16316 220 RTFDAYNG--Q--CLQTL-AGFL---NNKGCPLEASFTPDSKYVISGSTD-------------GRIHIWNAEKG------ 272 (335)
Q Consensus 220 ~i~d~~~~--~--~~~~~-~~~~---~~~~~v~~~~~sp~~~~l~tgs~d-------------g~v~iwd~~~~------ 272 (335)
..|+.... . ..+.+ .... ........++|.|||.++++-+.. |+|..++....
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np 180 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP 180 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence 55655432 1 11111 1111 111224569999999877765442 46777775421
Q ss_pred ------eeEEEeCCCCCCCeEEEEeCC-CCcEEEee
Q psy16316 273 ------FKVCVLDADHPSPVQTIQFNP-KFNMMASA 301 (335)
Q Consensus 273 ------~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~ 301 (335)
........+|.. ...++|+| ++.+.++-
T Consensus 181 f~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 181 FIKESGVRAEIWSYGIRN-PQGMAMNPWSNALWLNE 215 (353)
T ss_dssp TTTSTTSCTTEEEECCSE-EEEEEEETTTTEEEEEE
T ss_pred CcCCCCCCccEEEEcCcC-ccceEEECCCCCEEEEe
Confidence 011122234543 46899999 67766654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.16 Score=44.20 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=59.3
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCC----CcEEEEEeCC-----CcEEEE
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPD----SKYVISGSTD-----GRIHIW 267 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~----~~~l~tgs~d-----g~v~iw 267 (335)
.+++|.|+|++++ +..++.|++++ +++. +..+.........+..++|+|+ +.++++-+.+ ..|..|
T Consensus 34 ~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 34 WALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 5799999999555 45668899988 4432 1111111112345788999998 4555555433 678888
Q ss_pred ECCCCe-----eEE-EeC----CCCCCCeEEEEeCCCCcEEEee
Q psy16316 268 NAEKGF-----KVC-VLD----ADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 268 d~~~~~-----~~~-~~~----~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+. .+. .++ ..|. -..++|.|+|.+.++.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 876431 111 133 1132 3589999999877764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.73 Score=39.01 Aligned_cols=225 Identities=11% Similarity=0.128 Sum_probs=102.7
Q ss_pred EEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecC------CC----CeEEEEEcCCCceEee-
Q psy16316 35 LLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTK------ID----DTVRYLSLHDNKYIRY- 102 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~d----~~i~~~~~~~~~~~~~- 102 (335)
+++.|+ ..+.+||..+.+-...-.. ............ .+..++..+. .. ..+..||+.+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 455566 5788999988764321110 001111111122 2233333321 11 2266788877653321
Q ss_pred -ecCCCCCeEEEEECCCCCEEEEeeCC--------CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEc----
Q psy16316 103 -FPGHTKKVNSLCLSPIDDTFISGSYD--------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVN---- 168 (335)
Q Consensus 103 -~~~H~~~V~~~~~~~~~~~l~s~s~D--------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 168 (335)
++.....-..+.+ ++..++.|+.+ ..+.++|..+.+....-...... ...+...++.+++.|+.
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 1111111112222 45667777743 45788888765432211111111 11112235667777765
Q ss_pred --CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-----eEEEEECCCCeeeeeecccccCCC
Q psy16316 169 --SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-----IIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 169 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
-..+.+||+.+. .................+ ..+++.++.|+.++ .+.+||+.+.+.... ........
T Consensus 162 ~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~ 235 (315)
T 4asc_A 162 KCLNKMCVYDPKKF---EWKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EAFPQERS 235 (315)
T ss_dssp CBCCCEEEEETTTT---EEEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CCCSSCCB
T ss_pred cccceEEEEeCCCC---eEEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEEC-CCCCCccc
Confidence 246888887642 222221111111111122 22566666665432 588999988754332 11111111
Q ss_pred CceEEEEcCCCcEEEEEeCCC--------------cEEEEECCCC
Q psy16316 242 CPLEASFTPDSKYVISGSTDG--------------RIHIWNAEKG 272 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg--------------~v~iwd~~~~ 272 (335)
.. .++ .-++++++.|+.++ .+.+||..+.
T Consensus 236 ~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 236 SL-SLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp SC-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ce-eEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 11 122 23678888888642 3677787654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.83 Score=38.26 Aligned_cols=177 Identities=14% Similarity=0.164 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCC---ceeEEEecCCc-ceEE
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPN---CQGIMHVSGSR-PIAA 155 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~---~~~~~~~~~~~-~~~~ 155 (335)
..+..||+.+.+-... ++.....-..+. .++.+++.|+.+ ..+.++|+.+.. ....-...... ...+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 4567778776643321 221111112222 245677777765 468899988766 33221111111 1111
Q ss_pred ECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECC
Q psy16316 156 FDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAY 225 (335)
Q Consensus 156 ~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~ 225 (335)
...++.+++.|+.+ ..+.+||+.+. .................+. .+++.++.|+.+ ..+..||+.
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNID---QWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCC---eEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCC
Confidence 11256677777643 36788887642 2333322222111112222 256666665433 458899988
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCCe
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKGF 273 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~~ 273 (335)
+.+.... ........... + ...++++++.|+.+ ..+.+||..+..
T Consensus 184 ~~~W~~~-~~~p~~r~~~~-~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 184 TGHWTNV-TPMATKRSGAG-V-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEE-CCCSSCCBSCE-E-EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcEEeC-CCCCcccccce-E-EEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 7754332 11111111111 2 22367888888875 468999988664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.56 E-value=1.3 Score=39.99 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC---------cceEEECC----CCCEEEEEEc-----
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS---------RPIAAFDP----EGLIFGVGVN----- 168 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~----- 168 (335)
-...++++|.|+|+++++--..+.|++++...+....+...... ..-++++| ++.++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999999888765445788887655544333222211 12478898 4555554432
Q ss_pred -------CCeEEEEEccCCCCC---ceeeEE-eccCCCccceEEEEccCCCEEEEEe
Q psy16316 169 -------SDTIKLYDVRSFDKG---PFSNFK-FAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 169 -------d~~v~iwd~~~~~~~---~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
...|.-++....... ....+. ...........++|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554321110 001111 1111112246799999998666543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=1.1 Score=37.52 Aligned_cols=177 Identities=13% Similarity=0.214 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 86 DDTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
.+.+..||..+++-... +......-..+.+ ++.+++.|+.+ ..+.++|+.+.+....-...... ...+...
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 45678888877653322 2211112222222 45677778765 67788898876543322111111 1111122
Q ss_pred CCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---------CCeEEEEE
Q psy16316 159 EGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---------GSIIRTFD 223 (335)
Q Consensus 159 ~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------~~~i~i~d 223 (335)
++.+++.|+.+ ..+.+||+.+. .................+. .+++..+.++. -..+.+||
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTE---SWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCC---ceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 56677777654 45888887642 2222221111111111222 35555555532 34588999
Q ss_pred CCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
+.+.+.... .......... .++. -++++++.|+.+ ..+.+||..+.
T Consensus 176 ~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 176 PATETWTEL-CPMIEARKNH-GLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTTTEEEEE-CCCSSCCBSC-EEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCeEEEC-CCccchhhcc-eEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 988754322 1111111111 1222 267888888764 35889998765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=1.9 Score=38.45 Aligned_cols=198 Identities=15% Similarity=0.284 Sum_probs=118.8
Q ss_pred EEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecC
Q psy16316 27 IDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPG 105 (335)
Q Consensus 27 v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~ 105 (335)
.-.+|..+.+|-=. ..++.|+|+++...++...-.. .|.-=+|-.+....++ + +..|..|+++. ..+.+.+.-
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T---~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-T---DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-C---SSEEEEEESSSSCCCEEEEEC
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-c---CCeeEEecccCCCCchhheec
Confidence 44677787777654 6899999999887766544333 3333344443333333 2 67899999974 356666655
Q ss_pred CC----CCeEEEEECCCCCEEEEee-------CCCcEEEeecCCCCceeEEEecCCcceEEECCCC-----CEEEEEEc-
Q psy16316 106 HT----KKVNSLCLSPIDDTFISGS-------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-----LIFGVGVN- 168 (335)
Q Consensus 106 H~----~~V~~~~~~~~~~~l~s~s-------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 168 (335)
|. ..|..-..+++.++++-.+ -.|.+.++....+..+... ++......+..+| ++++.+..
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC--CSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe--eeeeeeEEEecCCCCCCceEEEEEEec
Confidence 53 4577777788888765432 2466778887765443211 1111112222222 24444443
Q ss_pred --CCeEEEEEccCC-CCC-cee----eEEeccCCCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 169 --SDTIKLYDVRSF-DKG-PFS----NFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 169 --d~~v~iwd~~~~-~~~-~~~----~~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
.+.+++.++... ... +.. ...+..+...++ -++..|+....+..-+.-|.+.+||++++.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 278999998643 111 111 111222222222 3588899999999999999999999999988754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.90 E-value=1.5 Score=45.04 Aligned_cols=195 Identities=14% Similarity=0.241 Sum_probs=109.4
Q ss_pred ECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecCC-
Q psy16316 29 YSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPGH- 106 (335)
Q Consensus 29 ~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~H- 106 (335)
.+|..+.+|-=+ ..++.|+|+++...++...-.. .|.-=+|..+....++ + +..|..|++.. ..+.+.+.-|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV--T--~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV--T--DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE--c--CCeEEEeccCCCCccHHHHhcch
Confidence 466777666554 6899999998876655432222 2222233333332222 2 57899999964 3455555545
Q ss_pred ---CCCeEEEEECCCCCEEEEee-------CCCcEEEeecCCCCceeEEEecCCcceEEE-----CCCCCEEEEEEc---
Q psy16316 107 ---TKKVNSLCLSPIDDTFISGS-------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAF-----DPEGLIFGVGVN--- 168 (335)
Q Consensus 107 ---~~~V~~~~~~~~~~~l~s~s-------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--- 168 (335)
...|..-..+++.++++-.| -.|.+.++....+..+..-.+.+ ....+ .+..++++.+..
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~--~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHh--hhheeccCCCCCCceEEEEEEecCC
Confidence 35677777788887765332 35777788776544322111100 00111 112234443332
Q ss_pred CCeEEEEEccCC-CCCceee-----EEeccCCCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 169 SDTIKLYDVRSF-DKGPFSN-----FKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 169 d~~v~iwd~~~~-~~~~~~~-----~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
.+.++|.++... .+.+... ..+..+....+ -++..|+....+..-+.-|.+.+||++++.++.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 368999988643 1111110 11111111111 357788888889999999999999999998764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.85 E-value=1.6 Score=36.97 Aligned_cols=174 Identities=10% Similarity=0.160 Sum_probs=82.1
Q ss_pred EEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-------CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 89 VRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 89 i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
+..+|+.+.+-... ++.-...-..+.+ ++..++.|+.+ ..+.++|+.+.+....-...... ...+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 66788876654332 2211111112222 45677777764 34778888765433221111110 0011124
Q ss_pred CCCEEEEEEc------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCC
Q psy16316 159 EGLIFGVGVN------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNG 227 (335)
Q Consensus 159 ~~~~~~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~ 227 (335)
++.+++.|+. ...+.+||+.+. .................+. -++..++.|+.+ ..+.+||+.+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKG---DWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCC---EEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 5667777653 235888888642 2332221111111112222 255666665432 34778998876
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCC--------------CcEEEEECCCC
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD--------------GRIHIWNAEKG 272 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d--------------g~v~iwd~~~~ 272 (335)
+... +.......... .+ ...++++++.|+.+ ..+.+||..+.
T Consensus 233 ~W~~-~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 233 KWEV-MTEFPQERSSI-SL-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CEEE-CCCCSSCCBSC-EE-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred eEEE-CCCCCCcccce-EE-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 5432 21111111111 12 22357788888764 34777777654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.84 E-value=3.9 Score=41.54 Aligned_cols=210 Identities=10% Similarity=0.115 Sum_probs=107.1
Q ss_pred CCeEEEEEcCCCceEeee-cCCCCCeEEEEECCC------CCEEEEeeC-CCcEEEeecCCCCceeEEEecC--C---cc
Q psy16316 86 DDTVRYLSLHDNKYIRYF-PGHTKKVNSLCLSPI------DDTFISGSY-DKTVRLWDLRSPNCQGIMHVSG--S---RP 152 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~-~~H~~~V~~~~~~~~------~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~--~---~~ 152 (335)
++.+.++.++.++..... ..-...|.|+++.|. ++.++-|.+ |+++++.++...+......... . ..
T Consensus 531 g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~ 610 (1158)
T 3ei3_A 531 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 610 (1158)
T ss_dssp TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEE
T ss_pred CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEE
Confidence 467777777655332211 112457999999763 368888887 9999999998655443333322 1 11
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
+..+ ....++.+|..||.+.-+.+... .+.....+...-...++.=..+...+..-+.++.++-..+|.....-....
T Consensus 611 l~~~-~~~~~L~igl~dG~l~~~~~d~~-tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~ 688 (1158)
T 3ei3_A 611 MTTF-ESSHYLLCALGDGALFYFGLNIE-TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSN 688 (1158)
T ss_dssp EEEE-TTEEEEEEEETTSEEEEEEECTT-TCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEE
T ss_pred EEEe-CCCcEEEEEeCCCeEEEEEEcCC-CCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEec
Confidence 2233 23457788989998877766532 122222211110112222222333343333333344333343332111111
Q ss_pred ecccccCCCCceEEEEcCC--CcEEEEEeCCCcEEEEECCCC--eeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 233 LAGFLNNKGCPLEASFTPD--SKYVISGSTDGRIHIWNAEKG--FKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~--~~~l~tgs~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+ ....--....|+.. ..-++..+ ++.++|..+.+- .....++. ......++++|..+.++.+...
T Consensus 689 l----~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL--~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 689 V----NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL--YESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp B----SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC--SSEEEEEEEEGGGTEEEEEEEE
T ss_pred c----ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC--CCCceEEEEcCCCCEEEEEEEe
Confidence 1 11111122345432 12344444 455999887543 33344444 3578999999998877666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=1.8 Score=37.32 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=99.7
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEe-cC--CCeeEEee-cCCCCeEEEEEcCCCceEeeecC----
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT-HA--KQAAIHAS-TKIDDTVRYLSLHDNKYIRYFPG---- 105 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~---- 105 (335)
.+++.++.||.|.-.|.++|+....+..... ...+... +. ....+++. ...|+.+..++..++.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4688899999999999999988877654310 1111111 10 11123333 35789998888877743322211
Q ss_pred CCCCeEEEE----E-----CCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc--------eEE---E--CCCCCEE
Q psy16316 106 HTKKVNSLC----L-----SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP--------IAA---F--DPEGLIF 163 (335)
Q Consensus 106 H~~~V~~~~----~-----~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~--------~~~---~--~~~~~~~ 163 (335)
...++.. . + ...+..+.+|+.++.+.-.|+++++....+....... +.. + ...+..+
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1122221 0 0 0145688999999999999999998877664432211 111 1 0113455
Q ss_pred EEEEcCCeEEEEEccCCCCCcee-eEEeccCCCcc--c-eEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFS-NFKFAAEKECD--W-TGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
..+..+..+.+.+ ++.+ .+. .+......... + .+-..+.|+.+ +.++.++.|.-+|..+|+..
T Consensus 169 ~ig~~~y~v~~~~-~sG~--~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA--SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSC--CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCC--eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 5565555555544 2211 110 01000000000 0 00011234666 45678889999998888754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.65 Score=41.96 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=60.1
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCeeee--eecccc---cCCCCceEEEEcC----CCcEEEEEeC---------
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ--TLAGFL---NNKGCPLEASFTP----DSKYVISGST--------- 260 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~---~~~~~v~~~~~sp----~~~~l~tgs~--------- 260 (335)
.+|+|.|+|+++++...++.|++++..+++... .+.... ....-...++|+| ++.++++-+.
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 579999999987776655678888866554321 221111 1123456899999 4555555543
Q ss_pred ---CCcEEEEECCCC------ee-EE-EeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 261 ---DGRIHIWNAEKG------FK-VC-VLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 261 ---dg~v~iwd~~~~------~~-~~-~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
...|..|+...+ .+ +. .++......-..++|.|+|.+.++.
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 235666665321 11 11 1222111245899999999876654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=2.8 Score=40.08 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=92.1
Q ss_pred CeEEEEEcCCCceEeee-c-------CCCCCeEEEEECC-CCCEEEEeeCCC------cEEEeecCCCCceeEEEec--C
Q psy16316 87 DTVRYLSLHDNKYIRYF-P-------GHTKKVNSLCLSP-IDDTFISGSYDK------TVRLWDLRSPNCQGIMHVS--G 149 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~-~-------~H~~~V~~~~~~~-~~~~l~s~s~D~------~i~vWd~~~~~~~~~~~~~--~ 149 (335)
+.+.+||+.+++-...- . .-... .+++..+ ++..++.||.++ .+.++|..+......-... .
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 45778888776543322 1 11111 2333333 667778887543 4678888765433221111 1
Q ss_pred CcceEEECCCCCEEEEEEcCC--eEEEEEccCCCCCceeeEEe---ccCCCccceEEEEccC-CCEEEEEeC--C-----
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKF---AAEKECDWTGIKFSAD-GKYILISTN--G----- 216 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~-~~~l~~~~~--~----- 216 (335)
.....+.-.++.+++.|+.++ .+.+||+.+. .+..... ..........+.+..+ +..++.|+. +
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~---~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE---IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSCSEEEEETTTT---EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred ccceEEEEcCCEEEEECCCCCCCCEEEEECCCC---ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 111233324778888887654 6888888652 2322221 1111111233555555 555565543 1
Q ss_pred CeEEEEECCCCee-----eeeecccccCCCCceEEEEcCCCcEEEEEeCC--------CcEEEEECCCCe
Q psy16316 217 SIIRTFDAYNGQC-----LQTLAGFLNNKGCPLEASFTPDSKYVISGSTD--------GRIHIWNAEKGF 273 (335)
Q Consensus 217 ~~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d--------g~v~iwd~~~~~ 273 (335)
..+..||+.+.+. -..+.........-..++...++++++.||.+ ..+.+||..+..
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 4588999887761 11221110011111123333447888888853 459999988653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.91 E-value=2.5 Score=35.49 Aligned_cols=177 Identities=8% Similarity=0.085 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeC----C-----CcEEEeecCCCCceeEEEecCCc-ceE
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSY----D-----KTVRLWDLRSPNCQGIMHVSGSR-PIA 154 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~----D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~ 154 (335)
..+.++|+.+.+-... ++.-...- ++... ++.+++.|+. + ..+.++|+.+.+....-...... ...
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 4567778776543322 11111111 12222 4567777765 2 46788888765433221111110 011
Q ss_pred EECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEEC
Q psy16316 155 AFDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDA 224 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~ 224 (335)
....++.+++.|+.+ ..+.+||+.+. .................+.+ ++..++.|+.+ ..+..||+
T Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEECCEEEEEcCCCCCcccccEEEECCCCC---eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 111256677776532 35778887642 12222111111111122222 55555555432 45889998
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCCe
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKGF 273 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~~ 273 (335)
.+.+.... ............+.+ ++++++.|+.+ ..+.+||..+..
T Consensus 192 ~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 192 ERNEWRMI-TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTTEEEEC-CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCeEeeC-CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 87754322 111111111112222 67888888865 459999987653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=3.1 Score=36.03 Aligned_cols=229 Identities=12% Similarity=0.101 Sum_probs=117.1
Q ss_pred cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc-eEeeec---CCCCCeEEEEECCC----CCEEEEeeC---C----C
Q psy16316 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK-YIRYFP---GHTKKVNSLCLSPI----DDTFISGSY---D----K 129 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~---~H~~~V~~~~~~~~----~~~l~s~s~---D----~ 129 (335)
....++|.+++. ++.+. .++.|++++. .++ .+..+. ........++++|+ +.+.++-+. + .
T Consensus 30 ~P~~ia~~pdG~--l~V~e-~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 30 VPWSIAPLGGGR--YLVTE-RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CEEEEEEEETTE--EEEEE-TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCeEEEEcCCCe--EEEEe-CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345567776653 33332 2477877763 333 222221 22356889999997 444454432 3 5
Q ss_pred cEEEeecCCC--Cc---eeEEE-ec----CCcceEEECCCCCEEEEEEcC-------------CeEEEEEccCC--CCCc
Q psy16316 130 TVRLWDLRSP--NC---QGIMH-VS----GSRPIAAFDPEGLIFGVGVNS-------------DTIKLYDVRSF--DKGP 184 (335)
Q Consensus 130 ~i~vWd~~~~--~~---~~~~~-~~----~~~~~~~~~~~~~~~~~~~~d-------------~~v~iwd~~~~--~~~~ 184 (335)
.|..|+.... .. ..++. .. +....+.|.|+|.++++-+.. +.|.-++.... ...+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877643 11 11111 11 122457899999888774331 34444444320 0000
Q ss_pred ---eeeEEeccCCCccceEEEEcc-CCCEEEEEeCCC---eEEEEECCCCeee---------------eeecccccCCCC
Q psy16316 185 ---FSNFKFAAEKECDWTGIKFSA-DGKYILISTNGS---IIRTFDAYNGQCL---------------QTLAGFLNNKGC 242 (335)
Q Consensus 185 ---~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~---~i~i~d~~~~~~~---------------~~~~~~~~~~~~ 242 (335)
...+. ... ....+++|+| ++.++++-.... .|.+.. .+... ..+.........
T Consensus 186 f~~~~i~a--~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 186 FPNSPIWS--YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp STTCCEEE--ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCCCcEEE--Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 01111 111 1235799999 666555433221 244432 12100 000000011234
Q ss_pred ceEEEE-------cCCCcEEEEEeCCCcEEEEECCCC-ee--EEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 243 PLEASF-------TPDSKYVISGSTDGRIHIWNAEKG-FK--VCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 243 v~~~~~-------sp~~~~l~tgs~dg~v~iwd~~~~-~~--~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
+..++| ..+|.++++.-..+.|...++... .. ...+...-...+.++++.|+|.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 567777 357778887777788999888742 21 1223222245789999999998777664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.68 E-value=3.2 Score=35.91 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=79.1
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------CCcceEEECCC----CCEEEEEE--cCCe
Q psy16316 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------GSRPIAAFDPE----GLIFGVGV--NSDT 171 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~--~d~~ 171 (335)
..-..-+.++|.|+|.++++--..|.|++++...+....+.... +...-++++|+ +.++++-+ .++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34456789999999998887766899999986655543222211 11234688885 55554322 3445
Q ss_pred EEEEEccCCC----C--CceeeEE-eccCCCccceEEEEccCCCEEEEEeC-------------CCeEEEEECCCCe---
Q psy16316 172 IKLYDVRSFD----K--GPFSNFK-FAAEKECDWTGIKFSADGKYILISTN-------------GSIIRTFDAYNGQ--- 228 (335)
Q Consensus 172 v~iwd~~~~~----~--~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~-------------~~~i~i~d~~~~~--- 228 (335)
|.-|.+.... . .....+. ...........+.|.|||.+.++.++ .+.|.-++....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 5556554311 0 0111111 11111112356999999976655332 2334334443210
Q ss_pred ----eeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 229 ----CLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 229 ----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
....+. .++ ..+..++|+|+|.++++-
T Consensus 189 nPf~~~~i~a--~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYS--YGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEE--BCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEe--eCC-CCcceEEECCCCCEEEEe
Confidence 001111 111 225679999998877664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.46 E-value=3.4 Score=35.67 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=120.5
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--ee----ecccccceEEEEecC--CCeeEEe--ecC
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TV----FSKKYGVDLIRFTHA--KQAAIHA--STK 84 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~----~~~~~~~~~~~~~~~--~~~~~~~--~~~ 84 (335)
+++-.--.....++|.|||.++++--..|.|++++...+.... .+ .....+...+++.++ .+..+++ +..
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3444445667899999999988888778999999876554321 11 122345677888775 2233332 222
Q ss_pred CCCeEEEEEcCCC----------ceE-eeec-CCCCCeEEEEECCCCCEEEEeeC-------------CCcEEEeecCCC
Q psy16316 85 IDDTVRYLSLHDN----------KYI-RYFP-GHTKKVNSLCLSPIDDTFISGSY-------------DKTVRLWDLRSP 139 (335)
Q Consensus 85 ~d~~i~~~~~~~~----------~~~-~~~~-~H~~~V~~~~~~~~~~~l~s~s~-------------D~~i~vWd~~~~ 139 (335)
.++.|.-+.+..+ +.+ ..+. +....-..+.|.|+|.+.++.+. -+.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3445555555431 111 1232 11123457999999998888653 233333343221
Q ss_pred C-------ceeEEEecC-CcceEEECCCCCEEEEEE-cCC--eEEEEEccCCCCCcee-----------e-EEeccCCCc
Q psy16316 140 N-------CQGIMHVSG-SRPIAAFDPEGLIFGVGV-NSD--TIKLYDVRSFDKGPFS-----------N-FKFAAEKEC 196 (335)
Q Consensus 140 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~--~v~iwd~~~~~~~~~~-----------~-~~~~~~~~~ 196 (335)
- ...++.... ...-++|+|+|.++++-. .++ .|.+......-.-+.. . ..+.. ...
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-DEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-TTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-CCC
Confidence 0 011222211 123468889888776542 222 2333211000000000 0 00000 001
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-ccCCCCceEEEEcCCCcEEEEEe
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-LNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
...+++|. ++..+...-.+..|....+.........+.. ......+..++..|||.++++-+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 22456665 4556666666666666666544321110111 11234577888999987665543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.21 E-value=4.4 Score=33.70 Aligned_cols=177 Identities=12% Similarity=0.237 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
..+..+|+.+.+-... ++.....-..+.+ ++.+++.|+.+ ..+.++|..+.+....-...... ...+...
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 3567778776643322 2211111112222 56677777755 35788888765433221111111 0111112
Q ss_pred CCCEEEEEEcCC-----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-------CCeEEEEECCC
Q psy16316 159 EGLIFGVGVNSD-----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-------GSIIRTFDAYN 226 (335)
Q Consensus 159 ~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------~~~i~i~d~~~ 226 (335)
++.+++.|+.++ .+.+||+.+. .................+. .+++.++.|+. -..+..||+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSN---EWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCC---eEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 567777776543 5777887542 2222221111111111222 24555555432 23588999987
Q ss_pred CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCCe
Q psy16316 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKGF 273 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~~ 273 (335)
.+.... .......... .+ ...++++++.|+.++ .+.+||..+..
T Consensus 183 ~~W~~~-~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 183 NEWTYI-AEMSTRRSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TEEEEE-CCCSSCCBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CcEEEC-CCCccccccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 754332 1111111111 12 223678888888653 68999987653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.39 E-value=13 Score=35.51 Aligned_cols=197 Identities=10% Similarity=0.104 Sum_probs=96.8
Q ss_pred CCCCEEEEecCC----CeEEEEEccCCcceeee-e-------cccccceEEEEecCCCeeEEeecCC-----CCeEEEEE
Q psy16316 31 ADGLLLISCSED----DQIVIYDCELGTNKRTV-F-------SKKYGVDLIRFTHAKQAAIHASTKI-----DDTVRYLS 93 (335)
Q Consensus 31 ~~g~~lasgs~D----g~i~lwd~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~~ 93 (335)
.++.+++.||.+ ..+.+||..+.+-...- . ........+.... ....++.+|.. -+.+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 567788888754 46788888776533221 1 0111122222211 22333333321 13577888
Q ss_pred cCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCceeEEE---e---cCCcceEEECCC-CCE
Q psy16316 94 LHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQGIMH---V---SGSRPIAAFDPE-GLI 162 (335)
Q Consensus 94 ~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~~~~---~---~~~~~~~~~~~~-~~~ 162 (335)
+.+.+-... +..-... .+++...++.+++.|+.++ .+.+||..+........ . ......+.+... +.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 877543322 2211111 1233324678888888765 68899988765332211 0 011122344444 667
Q ss_pred EEEEEc-------CCeEEEEEccCCCC---CceeeEEec-cCCCccceEEEEccCCCEEEEEeC--------CCeEEEEE
Q psy16316 163 FGVGVN-------SDTIKLYDVRSFDK---GPFSNFKFA-AEKECDWTGIKFSADGKYILISTN--------GSIIRTFD 223 (335)
Q Consensus 163 ~~~~~~-------d~~v~iwd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~--------~~~i~i~d 223 (335)
++.|+. .+.+..||+.+..- ..+...... ...... .++....++..++.|+. ...+.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 777765 24688889875320 002222211 111111 12333333666666552 34589999
Q ss_pred CCCCeee
Q psy16316 224 AYNGQCL 230 (335)
Q Consensus 224 ~~~~~~~ 230 (335)
+.+.+..
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9887654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=89.88 E-value=11 Score=33.85 Aligned_cols=203 Identities=10% Similarity=0.168 Sum_probs=111.0
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc-eEEECCCCCEE
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP-IAAFDPEGLIF 163 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 163 (335)
.+..+.+.|+..+..+..-+ -..-+.-.+|..+.++-=. ..++.++|+.+........+...+. ...+++. .+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l 119 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TV 119 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EE
T ss_pred CCCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eE
Confidence 34578888887754432211 1122455788777665544 7899999999877766655543322 2233333 33
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccC-CCccceEEEEccCCCEEEEEe---C----CCeEEEEECCCCee------
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-KECDWTGIKFSADGKYILIST---N----GSIIRTFDAYNGQC------ 229 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~---~----~~~i~i~d~~~~~~------ 229 (335)
+.. ++..|.-|++.. ...|..-+..... ..+.+-.-..+++.++++..+ . .|.+.+|..+....
T Consensus 120 ~lV-T~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh 197 (494)
T 1bpo_A 120 ALV-TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 197 (494)
T ss_dssp EEE-CSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS
T ss_pred EEE-cCCeeEEecccC-CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee
Confidence 333 446788898864 3344433332211 134444555667777665321 1 13455555443210
Q ss_pred ------------------------------ee-----------------eec---ccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 230 ------------------------------LQ-----------------TLA---GFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 230 ------------------------------~~-----------------~~~---~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
+. ... ........+.++-.|+....+..-+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 00 000 0001123455666777777888888
Q ss_pred CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
.-|.|++||++++..+..-.- -.++|...+-+++..
T Consensus 278 K~G~i~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATA 313 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTT
T ss_pred cCceEEEEecccceeeeeecc-cCCceEEecccCCCC
Confidence 999999999999987654432 345665555554433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.76 E-value=5.9 Score=35.74 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=57.4
Q ss_pred eEEEEccCCC-EEEEEeCCCeEEEEECCCCe---eeeeeccccc------CCCCceEEEEcCC----CcEEEEEeCC---
Q psy16316 199 TGIKFSADGK-YILISTNGSIIRTFDAYNGQ---CLQTLAGFLN------NKGCPLEASFTPD----SKYVISGSTD--- 261 (335)
Q Consensus 199 ~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~~------~~~~v~~~~~sp~----~~~l~tgs~d--- 261 (335)
..|+|.|++. .|+++...+.|++++..... .+..+..... ...-.+.++|+|+ +.++++-+.+
T Consensus 17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~ 96 (463)
T 2wg3_C 17 VGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQER 96 (463)
T ss_dssp EEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCS
T ss_pred eEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCC
Confidence 4689999996 45556678899999754321 1111111110 1234578999996 5555554421
Q ss_pred ---------CcEEEEECCCC----------eeEEEeC---CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 262 ---------GRIHIWNAEKG----------FKVCVLD---ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 262 ---------g~v~iwd~~~~----------~~~~~~~---~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
..|.-|....+ +.+..+. ..|. -..++|.|+|.+.++.+
T Consensus 97 ~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 97 WAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILG 157 (463)
T ss_dssp SCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEEC
T ss_pred cccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeC
Confidence 14555665421 1222221 2353 57899999997766543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.75 E-value=8.1 Score=32.35 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeC----C-------CcEEEeecCCCCceeEEEecCCcc-e
Q psy16316 87 DTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSY----D-------KTVRLWDLRSPNCQGIMHVSGSRP-I 153 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~----D-------~~i~vWd~~~~~~~~~~~~~~~~~-~ 153 (335)
..+..||+.+++-.. .++.............++..++.|+. + ..+.++|..+.+....-....... .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 567788887765432 22222222233333456777788874 1 126778887654322111111110 0
Q ss_pred EEECCCCCEEEEEEcC--------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-C-----CeE
Q psy16316 154 AAFDPEGLIFGVGVNS--------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-G-----SII 219 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~-----~~i 219 (335)
.....++.+++.|+.+ ..+.+||+.+. ............... ++ ...+++.++.|+. + ..+
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESDPLPYVVYGH-TV-LSHMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTT---EEEECCCCSSCCBSC-EE-EEETTEEEEECCBCTTSCBCCCE
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCC---cEeECCCCCCcccce-eE-EEECCEEEEEeCCCCCCcccceE
Confidence 1111256667776632 45788887642 122221111111111 12 2245566666554 1 468
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCCe
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKGF 273 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~~ 273 (335)
.+||+.+.+-... ........... + ..-++++++.|+.++ .+.+||..+..
T Consensus 168 ~~yd~~~~~W~~~-~~~p~~r~~~~-~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 168 CVYDPKKFEWKEL-APMQTARSLFG-A-TVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEETTTTEEEEC-CCCSSCCBSCE-E-EEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEeCCCCeEEEC-CCCCCchhceE-E-EEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 8999887754322 11111111111 2 223678888888765 48889987653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=88.51 E-value=26 Score=36.49 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.8
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
.+.++-.++....+..-+.-|.|+++|+.++..+.
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 45556667766777788889999999999986543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=88.12 E-value=11 Score=31.73 Aligned_cols=161 Identities=8% Similarity=-0.018 Sum_probs=85.5
Q ss_pred EECCCCCEEEEeeCC--------------CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEE--cC--CeEEEE
Q psy16316 114 CLSPIDDTFISGSYD--------------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV--NS--DTIKLY 175 (335)
Q Consensus 114 ~~~~~~~~l~s~s~D--------------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d--~~v~iw 175 (335)
-+++++.+|.-+... ..|+..++.......+. .. ....+++++..+.-.. .+ ..|...
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~--~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD--PD--PCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE--CS--CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee--cC--CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 446777777666542 46777777655432221 11 1235666777766554 23 344444
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
++... ....+.. ... .+++|+++.|.-.+. ...|...++..+...+.+.+ .....++|++++
T Consensus 135 ~~dGs---~~~~lt~---~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-------~~~~~~~P~g~~ 197 (302)
T 3s25_A 135 RIDGE---EKKKIKN---HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-------NCYKPVVLDDTN 197 (302)
T ss_dssp ETTSC---CCEEEES---SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-------CEEEEEEEETTE
T ss_pred ECCCC---CeEEEeC---CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-------CccceeeecCCE
Confidence 44421 1122211 111 346888998887665 56788888877654332221 112346698888
Q ss_pred EEEEeCC--CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 255 VISGSTD--GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 255 l~tgs~d--g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
|+-...+ ..|..-++....+. .+.. ..+ ..|+|++.+|.-+
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~~-~Lt~---~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNPV-VLTE---ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCCE-ECSC---SCE--EEEEEETTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCeE-EEeC---CCc--ceEEECCCEEEEE
Confidence 7765543 34555565544333 3321 233 3477777766543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.16 E-value=13 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCCEEEEeeC-C---------CcEEEeecCCCCceeEEEec-CCc-ceEEECCCCCEEEEEEcC
Q psy16316 118 IDDTFISGSY-D---------KTVRLWDLRSPNCQGIMHVS-GSR-PIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 118 ~~~~l~s~s~-D---------~~i~vWd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d 169 (335)
++.+++.|+. + ..+.++|+.+.+........ ... ...+...++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 4567777776 2 46788888775433221111 111 111222567788888754
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=86.44 E-value=13 Score=36.95 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 108 ~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
..+.++...++..+++|-+.|+++|+|++.++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777788888899999999999999999998876654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=82.61 E-value=18 Score=33.48 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=63.4
Q ss_pred cEEEEEECCCCCEEEEec-CCCeEEEEEccCCcc---------eeeee-c--ccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 23 KITSIDYSADGLLLISCS-EDDQIVIYDCELGTN---------KRTVF-S--KKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~---------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
....+.++|||++++.++ -+.++.++|.+.-.. ...+. . ...+....+|.. .+..+.+-..|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~--~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG--RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS--SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC--CCceEeeeeecceE
Confidence 345789999999877665 589999999874211 00111 1 122334455554 34556666789999
Q ss_pred EEEEcCCC----------ceEeeecCCCCCeEE-----EEECCCCCEEEEee---CCCcE
Q psy16316 90 RYLSLHDN----------KYIRYFPGHTKKVNS-----LCLSPIDDTFISGS---YDKTV 131 (335)
Q Consensus 90 ~~~~~~~~----------~~~~~~~~H~~~V~~-----~~~~~~~~~l~s~s---~D~~i 131 (335)
.-|++... ..+..+.-|-.+-.- =.-.|+|++|++.. .|..+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl 461 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL 461 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence 99999653 344444333322111 12357888998864 45544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.84 E-value=23 Score=29.47 Aligned_cols=175 Identities=12% Similarity=0.162 Sum_probs=83.7
Q ss_pred eEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeC----CC-------cEEEeecCCCCceeEEEecCC---cc
Q psy16316 88 TVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSY----DK-------TVRLWDLRSPNCQGIMHVSGS---RP 152 (335)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~----D~-------~i~vWd~~~~~~~~~~~~~~~---~~ 152 (335)
.+..||..+++-.. .+..............++..++.|+. ++ .+.++|..+.+....-..... ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 47788887765433 12211122222333456677777773 12 166778776543322111111 11
Q ss_pred eEEECCCCCEEEEEEcC-------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC------CCeE
Q psy16316 153 IAAFDPEGLIFGVGVNS-------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN------GSII 219 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------~~~i 219 (335)
+..+ ++.+++.|+.+ ..+.+||+.+. .............. .+++. .++...+.|+. -..+
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCE
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC---CEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceE
Confidence 2222 56677777653 35777787642 22222111111111 11222 45666565542 2358
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCC
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKG 272 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~ 272 (335)
.+||+.+.+.... .......... .++. -++++++.|+.++ .+.+||..+.
T Consensus 178 ~~yd~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 178 FIYNPKKGDWKDL-APMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEETTTTEEEEE-CCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEC-CCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 9999988754332 1111111111 2222 3678888887543 4778888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 335 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-28 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-15 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.001 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 7e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 | |
| d1xfda1 | 465 | b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik | 0.002 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 109 bits (272), Expect = 3e-28
Identities = 59/304 (19%), Positives = 119/304 (39%), Gaps = 22/304 (7%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ +T + + +++S SED I ++D E G +RT+ V I F H+ +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
S + + + IR GH V+S+ + P D +S S DKT+++W++
Sbjct: 73 LLASCSADMTIKLWDF--QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 137 RSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD--------KGPFSN 187
++ C + + +G + N T++++ V + + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190
Query: 188 FKFAAEKECDWTG-------IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
+A E K G ++L + I+ +D G CL TL G N
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
F K+++S + D + +W+ + + L+A H V ++ F+ + +
Sbjct: 251 RG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVT 306
Query: 301 ACTN 304
+
Sbjct: 307 GSVD 310
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.1 bits (175), Expect = 6e-15
Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 19/188 (10%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+++ K F + + + + + DG L+ SCS D + ++ K + ++ V+
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 68 LIRFTHAKQAAIHASTKI------------------DDTVRYLSLHDNKYIRYFPGHTKK 109
I + + + D T++ + + GH
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 110 VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVN 168
V + +S + DKT+R+WD ++ C ++ + F G
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 169 SDTIKLYD 176
T+K+++
Sbjct: 310 DQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.7 bits (174), Expect = 9e-15
Identities = 29/214 (13%), Positives = 72/214 (33%), Gaps = 8/214 (3%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162
GH V + P+ +S S D T+++WD + + + +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
+ ++ +D F + + + + + +G +I+ ++ I+ +
Sbjct: 73 L----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
+ G C++T G ++ D + S S D + +W L +H
Sbjct: 129 EVQTGYCVKTFTG---HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EH 184
Query: 283 PSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNH 316
V+ I + P+ + + + + +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGP 218
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 98.3 bits (243), Expect = 6e-24
Identities = 66/302 (21%), Positives = 107/302 (35%), Gaps = 52/302 (17%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF 71
+ + R + KI ++ + D LL+S S+D +++I+D + + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 72 THAKQ-------------------------------------------AAIHASTKIDDT 88
+ ++ D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--H 146
+ + F GHT V SL L+P F+SG+ D + +LWD+R C+ H
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD 206
S I F P G F G + T +L+D+R+ + + C T + FS
Sbjct: 226 ESDINAIC-FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN---IICGITSVSFSKS 281
Query: 207 GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHI 266
G+ +L + +DA LAG N C T D V +GS D + I
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAVATGSWDSFLKI 338
Query: 267 WN 268
WN
Sbjct: 339 WN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.6 bits (197), Expect = 1e-17
Identities = 19/128 (14%), Positives = 44/128 (34%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+R + F + I +I + +G + S+D ++D T
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY 127
+ + +K + + D GH +V+ L ++ +GS+
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 128 DKTVRLWD 135
D +++W+
Sbjct: 333 DSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 3e-11
Identities = 38/256 (14%), Positives = 78/256 (30%), Gaps = 11/256 (4%)
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
K + R A + ID R + R GH K+ ++
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRI----QMRTRRTLRGHLAKIYAMHWGTDSRLL 70
Query: 123 ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFD 181
+S S D + +WD + N + + S + A+ P G G + +Y++++ +
Sbjct: 71 VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
+ + A + + + T
Sbjct: 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
PD++ +SG+ D +W+ +G H S + I F P N A+
Sbjct: 191 S-----LAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATG 244
Query: 302 CTNLAFWIPTYLSNHQ 317
+ + ++ +
Sbjct: 245 SDDATCRLFDLRADQE 260
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.5 bits (215), Expect = 6e-20
Identities = 49/269 (18%), Positives = 92/269 (34%), Gaps = 20/269 (7%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
I S+ +S DG L + +ED I I+D E + + + + + + +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
S D TVR L + +GS D+ VR+WD +
Sbjct: 181 GSG--DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 141 CQGIMHVSGSRPIA--------AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA 192
+ F +G G ++KL+++++ + S +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 193 EKECDW-------TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC--- 242
E + + + + +YIL + + +D +G L L G N+
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEK 271
+S P+ +GS D + IW +K
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.9 bits (203), Expect = 2e-18
Identities = 54/318 (16%), Positives = 117/318 (36%), Gaps = 36/318 (11%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
++T + + +S DG L + + +Y G+ + + +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 79 IH----------------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
A+ D +R + + K + GH + + SL P D
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 123 ISGSYDKTVRLWDLR-SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-- 179
+SGS D+TVR+WDLR + G +A +G G ++++D +
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT------- 232
+ S + + + F+ DG+ ++ + ++ ++ N
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 233 --LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTI- 289
++ +K L + T + +Y++SGS D + W+ + G + +L H + V ++
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVA 357
Query: 290 -----QFNPKFNMMASAC 302
P++N+ A+
Sbjct: 358 VANGSSLGPEYNVFATGS 375
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 7e-14
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 16/137 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ D + S+ ++ DG ++S S D + +++ + NK + G + + K
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 77 AAIH----------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLC------LSPIDD 120
+ S D V + + GH V S+ L P +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 121 TFISGSYDKTVRLWDLR 137
F +GS D R+W +
Sbjct: 370 VFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.8 bits (130), Expect = 5e-09
Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 34/230 (14%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA----- 154
+ HT V + S D +++ +KT +++ + + + +
Sbjct: 55 LHKSLDHTSVVCCVKFSN-DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113
Query: 155 --------------AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG 200
F P+G G I+++D+ + D
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE-----QDIYS 168
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260
+ + G ++ + +R +D GQC T G A D KY+ +GS
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT---LSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 261 DGRIHIWNAEKGFKVCVLDAD------HPSPVQTIQFNPKFNMMASACTN 304
D + +W++E GF V LD++ H V ++ F + S +
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.001
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 27/160 (16%)
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
Y+ R+ P F + + +K + YIL N ++ R D L
Sbjct: 6 YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILY--NPALPREIDV-------ELH 56
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------- 281
L++ F+ D +Y+ +G + ++ G V L D
Sbjct: 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115
Query: 282 ----HPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQ 317
++++ F+P +A+ + I +
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (181), Expect = 1e-15
Identities = 36/236 (15%), Positives = 85/236 (36%), Gaps = 17/236 (7%)
Query: 39 CSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98
S D + ++D E G + V +++ + + D V+
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY----DFMVKVWDPETET 168
Query: 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP 158
+ GHT +V L +SGS D ++R+WD+ + NC + S + +
Sbjct: 169 CLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMEL 225
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI 218
+ I G T+K++D+++ + + +++ S++
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----LQFNKNFVITSSDDGT 281
Query: 219 IRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTPDSKYVISGSTDG----RIHIWN 268
++ +D G+ ++ L + + G + GS +G ++ + +
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 3e-14
Identities = 50/301 (16%), Positives = 103/301 (34%), Gaps = 22/301 (7%)
Query: 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLI 69
K K+ + + D + + G ++S S+D+ + ++ G RT+ GV
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK 129
+ + + + C+ + +SGS D
Sbjct: 64 QMRD------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 130 TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189
T+R+WD+ + C ++ + + + +K++D +
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF-MVKVWDPETET-------C 169
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ DG +++ + + IR +D G C+ TL G L +
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-----QSLTSGME 224
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNPKFNMMASACTNLAF 307
++SG+ D + IW+ + G + H S V +QFN F + +S +
Sbjct: 225 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284
Query: 308 W 308
W
Sbjct: 285 W 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 1e-08
Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88
DG+ ++S S D I ++D E G T+ + + I S D T
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADST 238
Query: 89 VRYLSLHDNKYIRYFPGHTKKVNSLCL-SPIDDTFISGSYDKTVRLWDLRSPNC------ 141
V+ + + ++ G K +++ + I+ S D TV+LWDL++
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298
Query: 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
G L+ VG + T + + D
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK-LLVLD 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 3e-15
Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 10/252 (3%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ I S DG LI E + I+D T + +
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ + S D + LH+ +R F GHT + + +S +G D TVR WDL
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
R + + P G VG+ S +++ V DK E
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH------ES 266
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
+KF+ GK+ + + +++ + G + L + D KY++
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE----SSSVLSCDISVDDKYIV 322
Query: 257 SGSTDGRIHIWN 268
+GS D + ++
Sbjct: 323 TGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (154), Expect = 4e-12
Identities = 29/289 (10%), Positives = 71/289 (24%), Gaps = 17/289 (5%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-----FSKKYGVDLIRFTHAK 75
+ + ++ S + + + ++D NK V ++ + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
I ++ L+ + +L +SP S D + +WD
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
L + D +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL-----REGRQLQQHDFT 224
Query: 196 CDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255
+ + G+++ + S + Q ++ C L F K+
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----LHLHESCVLSLKFAYCGKWF 280
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304
+S D ++ W G + S V + + + + +
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGD 327
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 13/79 (16%), Positives = 19/79 (24%)
Query: 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP 158
H V SL + F+S D + W S S
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316
Query: 159 EGLIFGVGVNSDTIKLYDV 177
+ G +Y+V
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 1e-05
Identities = 13/120 (10%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 203 FSADGKYILISTNG-SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
+ADG+ + ++I + + + TL N+ + + +++V +G
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTL----NHGEVVCAVTISNPTRHVYTGG-K 71
Query: 262 GRIHIWNAEKGFKVCVL----DADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQ 317
G + +W+ + + + +++ + P + I +
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 24/199 (12%), Positives = 55/199 (27%), Gaps = 13/199 (6%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
H + V ++ +S +G V++WD+ P + S + + + I
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-----SPVSQLDCLNRDNYIRS 102
Query: 165 VGVNSDTIKL-----YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSII 219
+ D L S + AE A + +
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
++ + F + + D + +G D + W+ +
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD--LREGRQLQQ 220
Query: 280 ADHPSPVQTIQFNPKFNMM 298
D S + ++ + P +
Sbjct: 221 HDFTSQIFSLGYCPTGEWL 239
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (178), Expect = 3e-15
Identities = 38/332 (11%), Positives = 95/332 (28%), Gaps = 21/332 (6%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV---FSKKYGVDL 68
++ ++ + D I+ I LL+ S D + +Y ++ + K+ +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
F I+ T + ++ + + DD I+ S+D
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 129 KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD--VRSFD----K 182
+ + D R+ I + + + + + + + V+ F +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242
+ + K + + S+ + + + +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 243 PLEA------------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQ 290
L F+P K++ + +DG I WN + K+ + V I
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301
Query: 291 FNPKFNMMASACTNLAFWIPTYLSNHQEPDTI 322
+ +A++ + +I
Sbjct: 302 CSDNILCLATSDDTFKTNAAIDQTIELNASSI 333
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 67.2 bits (162), Expect = 4e-13
Identities = 25/242 (10%), Positives = 58/242 (23%), Gaps = 17/242 (7%)
Query: 50 CELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK 109
+ + + + + + ++ + + I
Sbjct: 121 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 180
Query: 110 VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--------VSGSRPIAAFDPEG- 160
+ SY D N + + GS P
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240
Query: 161 -LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSII 219
G +D K + D G + ++ Y + ++
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
+D + + + L + + D K V+ DG+I+ + EK ++
Sbjct: 301 LKYDVKTRK-VTEVKNNLTD------LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
Query: 280 AD 281
D
Sbjct: 354 TD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 24/196 (12%), Positives = 43/196 (21%), Gaps = 4/196 (2%)
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG--LIFGVGVNSDTIK 173
SP+D I+ + D+ + R + + D +
Sbjct: 11 SPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGDTKVAFIHGTREGDFLG 69
Query: 174 LYDVRS-FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232
+YD R+ + N D G I T
Sbjct: 70 IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
+ F + A P G IH+++ E + +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 189
Query: 293 PKFNMMASACTNLAFW 308
K S +
Sbjct: 190 SKNLYYLSYRSLDPSP 205
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 15/136 (11%), Positives = 28/136 (20%), Gaps = 11/136 (8%)
Query: 203 FS-ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
FS DG I + G D L+ + D+K T
Sbjct: 10 FSPLDGDLIAFVSRGQA-FIQDVSGTYVLK-----VPEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 262 G--RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQEP 319
+ I++ G ++ V + + A +
Sbjct: 64 EGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 320 DTIDNLKIYLGVLCYQ 335
+
Sbjct: 122 IERSREAMITDFTISD 137
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.5 bits (155), Expect = 2e-12
Identities = 32/269 (11%), Positives = 74/269 (27%), Gaps = 8/269 (2%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+ S +++ E++ + T S G S + I+D T+ +
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY 127
+ + ++ A+ + + +
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 128 DKTVRLWDLRSPNCQGIMHVSG----SRPIAAFDPEGLIFGVGVNSDTIKLYDVRS--FD 181
+ G ++P+G +F TI LY+
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
+ G+ +S DG I ++ I+ ++ + +T+ +
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAE 270
L + ++S S +G I+ N E
Sbjct: 285 QQL--GIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.1 bits (146), Expect = 3e-11
Identities = 33/294 (11%), Positives = 72/294 (24%), Gaps = 12/294 (4%)
Query: 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82
+ + G + C+ + T+ + + + + +
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 83 TKIDDTVRYLSLHDNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
VR +I P + V + + + R + +
Sbjct: 78 V--HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA-VGEGRERFGHVFLFD 134
Query: 141 CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG 200
+ A + V F+ PF E
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG----FLNNKGCPLEASFTPDSKYVI 256
++++ DG + I ++ +G + + G +++PD +
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN--LAFW 308
S S D I IWN + Q + + S N + F
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 6e-12
Identities = 49/302 (16%), Positives = 100/302 (33%), Gaps = 30/302 (9%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
E + + + Y D ++S D+ I I+D KR + V +++
Sbjct: 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ + + N I + L + ++ S D+++ +WD+
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL------HLRFNNGMMVTCSKDRSIAVWDM 122
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEK 194
SP + V A + + S TIK+++ + +
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-------FVRTLN 175
Query: 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
+ ++ ++ + IR +D G CL+ L G L D+K
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH-----EELVRCIRFDNKR 230
Query: 255 VISGSTDGRIHIWNAEKGFKVCVLDAD--------HPSPVQTIQFNPKFNMMASACTNLA 306
++SG+ DG+I +W+ H V +QF+ + +S +
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290
Query: 307 FW 308
W
Sbjct: 291 IW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (130), Expect = 4e-09
Identities = 35/214 (16%), Positives = 67/214 (31%), Gaps = 13/214 (6%)
Query: 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA 154
H + I +K V CL D +SG D T+++WD + C+ I+
Sbjct: 3 HSLQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-------- 52
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
L D + + + ++ +
Sbjct: 53 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 112
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274
I +D + + + ++ F D KY++S S D I +WN
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 170
Query: 275 VCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW 308
V L+ H + +Q+ + + S+ + W
Sbjct: 171 VRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLW 203
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 7/125 (5%)
Query: 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ N K L++S S D+ I ++D E G R + + V IRF + +
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR 230
Query: 76 QAAIHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT 130
+ KI + + +R H+ +V L +S S+D T
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDT 288
Query: 131 VRLWD 135
+ +WD
Sbjct: 289 ILIWD 293
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 4e-11
Identities = 43/354 (12%), Positives = 101/354 (28%), Gaps = 67/354 (18%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR------TVFSKKYGVDLIRF--- 71
I S+ +SCS D + ++D +L N+ + F K G+ +
Sbjct: 14 DADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 72 --THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT----------KKVNSLCLSPID 119
A + + A+T + + + + +L +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 120 D-----TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI-------------------AA 155
D ++ T +W + P
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILIST 214
GLI G N+ T+++ ++ + + + + +KFS G + I+
Sbjct: 192 ISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 215 NGSIIRTFDAYNGQC-------------LQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
+ + Y + Q G + + SF + + S D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQ----TIQFNPKFNMMASACTNLAFWIPT 311
G++ W+ + ++ L+ H ++ + + + +A ++
Sbjct: 311 GKLRFWDVKTKERITTLNM-HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 363
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 1e-10
Identities = 30/252 (11%), Positives = 76/252 (30%), Gaps = 47/252 (18%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ--------------GIMHVSGS 150
H + S+ +S S D +++WD + + + G+ HV
Sbjct: 12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSA 205
+ I E + S + Y + D + + K+ + +K+ A
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 206 DGKYILI------STNGSIIRTFDAYNGQCLQTLAG--------------FLNNKGCPLE 245
+L G+ +L +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-----ADHPSPVQTIQFNPKFNMMAS 300
+ + +G +G + I + + ++ + +++++F+P+ +++A
Sbjct: 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248
Query: 301 ACTNLAFWIPTY 312
A + +F T
Sbjct: 249 AHDSNSFGCITL 260
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 32/192 (16%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYD---CELGTNKRTVFSKKYGVDLIRFTH 73
+ TS+D S GL+ + + + I + N + S + IR
Sbjct: 180 PMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 74 AKQAAIHASTKIDDTVRYL-----------------SLHDNKYIRYFPGHTKKVNSLCLS 116
+ D H ++ H+ V SL +
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 117 PIDDTFISGSYDKTVRLWDLRSPNCQGIMH-----VSGSRPIAAFDPEGLIFGVGVNSDT 171
+T S +D +R WD+++ ++ + I A D G
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP----- 353
Query: 172 IKLYDVRSFDKG 183
++DV+ KG
Sbjct: 354 -GVFDVKFLKKG 364
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 1e-10
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 14/271 (5%)
Query: 12 KVAKLFRENTDKITSIDYS--ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG---- 65
V + + +T++ +S L S E +++++ +V
Sbjct: 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 113
Query: 66 ----VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
+ I + + D+ ++S + GH++++N+ L
Sbjct: 114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173
Query: 122 FISGSYDKTVR----LWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
D + H GS V K+
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 233
Query: 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237
+ E D + + IR +D +C+Q
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
G + +IS S DG ++ +
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 6e-09
Identities = 36/288 (12%), Positives = 76/288 (26%), Gaps = 18/288 (6%)
Query: 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-----VDLIRFTHAKQA 77
T + Y + + + G +K + G V ++F+ K +
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYF--------PGHTKKVNSLCLSPIDDTFISGSY-- 127
S V +K ++ +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 128 DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
D S N G + R A + D + + ++
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 188 FKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
+ ++ ++FS D G++++ + I FD +G+ L+ + + A
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNP 293
DS+ + D I +W+ V D Q +
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 7e-06
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS---PIDDTFISGSYDKTVRLWDL 136
A+ D T+R + +K ++ + +++ + + + IS S D T+ ++L
Sbjct: 267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (140), Expect = 2e-10
Identities = 34/298 (11%), Positives = 81/298 (27%), Gaps = 62/298 (20%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA 81
+ I+ ++ D + C + ++ IY+ +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ------------------------ 43
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ H +V + +P + ++ D+ +W L+
Sbjct: 44 ------------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85
Query: 142 QGIMHVS---GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ + + + + P F VG S I + + +
Sbjct: 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG---------------FLNNKGCP 243
+ S + R F AY + + A ++ G
Sbjct: 146 SLDWHPNSVLLAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
F+ + V S D + + +A+K A P+ + F + +++A+
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAG 261
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.6 bits (137), Expect = 5e-10
Identities = 37/303 (12%), Positives = 77/303 (25%), Gaps = 24/303 (7%)
Query: 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL 68
+ +E+ ++T +D++ D +++C D ++ + T K T+ +
Sbjct: 39 NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA 98
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNK----YIRYFPGHTKKVNSLCLSPIDDTFIS 124
A A + V SL P +
Sbjct: 99 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF---DPEGLIFGVGVNSDTIKLYD----- 176
GS D R++ + + F E V+
Sbjct: 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218
Query: 177 ------VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230
V D A + + F + + + + F +
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVL-FTYDSAAGK 277
Query: 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQ 290
+ G L+ P ++S + + D + + LD+ H + V I
Sbjct: 278 LSFGGRLDV---PKQSSQRGLTARERFQNLDKKASSEGSAA--AGAGLDSLHKNSVSQIS 332
Query: 291 FNP 293
Sbjct: 333 VLS 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.0 bits (120), Expect = 8e-08
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 8/127 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
T + ++ + + L+ + D V++ + K + + +D+ + + +
Sbjct: 239 LASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGR---LDVPKQSSQRG 294
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT----FISGSYDKTVR 132
+ D H V+ + + F + D +
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 133 LWDLRSP 139
+WD+RS
Sbjct: 355 IWDVRSL 361
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 17/210 (8%), Positives = 51/210 (24%), Gaps = 6/210 (2%)
Query: 102 YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPI--AAFDP 158
Y + ++ + + V +++ + + + + + P
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI 218
+ ++ ++ P S SI
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG-FKVCV 277
+ + + L + P+S + +GS D + I++A +
Sbjct: 122 CYFEQENDWWVCKH--IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 278 LDADHPSPVQTIQFNPKFNMMASACTNLAF 307
S + + + + + F
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCF 209
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 15/194 (7%)
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ T + + + V+ +C S S+D TV L D
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235
Query: 142 -QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG 200
+ + F E + G + L+ S + K+ G
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY----VI 256
+ +A ++ + S + A G L +L +K + S K
Sbjct: 295 L--TARERFQNLDKKASSEGS--AAAGAGLDSL-----HKNSVSQISVLSGGKAKCSQFC 345
Query: 257 SGSTDGRIHIWNAE 270
+ DG + IW+
Sbjct: 346 TTGMDGGMSIWDVR 359
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 57.7 bits (137), Expect = 4e-10
Identities = 40/293 (13%), Positives = 83/293 (28%), Gaps = 10/293 (3%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIR 70
+ ++ + IT++ SADG L S + I +D G + R + I+
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT 130
T + V + + + L +S D ++ Y
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 131 VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+ + S A + G +
Sbjct: 123 AIYSHGKLTEVPISYNSS----CVALSNDKQFV----AVGGQDSKVHVYKLSGASVSEVK 174
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ T + FS +G +++ + + + N L + + S++P
Sbjct: 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVL-DADHPSPVQTIQFNPKFNMMASAC 302
D+ + +GS D + +WN K ++ H + SA
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 7e-09
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPV 286
G Q G + S + D K + S +G I+ W+ G V H + +
Sbjct: 2 GSIDQVRYG---HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 58
Query: 287 QTIQFNPKFNMMASACTNLAFWIPT 311
I+ K ++ + + +P
Sbjct: 59 TGIKTTSKGDLFTVSWDDHLKVVPA 83
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 2e-05
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 80 HASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
A+ +D++V +++ I H + + + T +S D ++ W++
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.6 bits (132), Expect = 3e-09
Identities = 24/224 (10%), Positives = 60/224 (26%), Gaps = 16/224 (7%)
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIA-AFDPEG-LIFGVGVNSDTIKLY 175
D ++ + + + D ++ + +G P+ P G + + S+++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ---- 231
D+ + + + E+ G S DGK + I + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 232 ----TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQ 287
+ ++ D + D + V D S
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE----AGTLVEDKPIQSWEA 177
Query: 288 TIQFNPKFNMMASACTNLAFWIPTYLSNHQEPDTIDNLKIYLGV 331
P + + + + + ++ D D G+
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 29/309 (9%), Positives = 72/309 (23%), Gaps = 51/309 (16%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTV--- 59
V + +A + + G + + ++ + +V D G +
Sbjct: 20 KMAVDKVITIA----DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75
Query: 60 ---------FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY--IRYFPGHTK 108
F D + T + ++L+D + R +
Sbjct: 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR 135
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLW----------------------DLRSPNCQGIMH 146
++ L + D V D+ + Q
Sbjct: 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD 206
+ P + + D+ + + D + +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETG------EMAMREVRIMDVFYFSTAVN 249
Query: 207 GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHI 266
+++ +FD ++ + + + D V G G +
Sbjct: 250 PAKTRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 267 WNAEKGFKV 275
++AE K
Sbjct: 306 YDAETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 5e-06
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
D + ++ D E G +D+ F+ A A
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAK 252
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
+ + + L N I+ P S+ +S T G + +D +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311
Query: 140 NCQGIMHVSGSRPIAAFDP 158
+G + + G+ ++
Sbjct: 312 EKKGQVDLPGNASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 1e-05
Identities = 10/128 (7%), Positives = 27/128 (21%), Gaps = 6/128 (4%)
Query: 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165
D +Y + DL + +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225
+ ++ +D+ + + S DG + + + +DA
Sbjct: 256 FGAYNVLESFDLEKN------ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309
Query: 226 NGQCLQTL 233
+ +
Sbjct: 310 TLEKKGQV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 26/206 (12%), Positives = 56/206 (27%), Gaps = 9/206 (4%)
Query: 115 LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIA-AFDPEG-LIFGVGVNSDT 171
L + I +Y + + D+ S + P P+ + + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230
I D+ + +N + S DGK + + N +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 231 QTLAGFLNNKGC-PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTI 289
+ + P+ P Y++ + DG +++ + +D +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY----KMDVKTGKYTVAL 179
Query: 290 QFNPKFNMMASACTNLAFWIPTYLSN 315
SA L FW +
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRH 205
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 31/333 (9%), Positives = 76/333 (22%), Gaps = 55/333 (16%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSK 62
+D V +S + + + + D + + I D + N
Sbjct: 27 SDTVYKSCVM-----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81
Query: 63 KYGVDLIRFTH-----AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT---KKVNSLC 114
++ R + ++A+ + + + F K
Sbjct: 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141
Query: 115 LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
P + + D ++ + M V + A D +
Sbjct: 142 PMPRQVYLMRAADDGSL----YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI---------------------- 212
+ +S + A K+ Y+ +
Sbjct: 198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257
Query: 213 ----------STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
+ + +D + ++ N +F + G T
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA----NLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 263 RIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPK 294
+ ++N + KV + T Q +
Sbjct: 314 DLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 1e-08
Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 8/131 (6%)
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV-ISG 258
G A +Y++++ + + D + ++ + +K P A PD++ +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLN 58
Query: 259 STDGRIHIWNAEKGFKVCVLD-----ADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYL 313
+ G I+ + + + + + + +P + + Y+
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 314 SNHQEPDTIDN 324
+
Sbjct: 119 VKPPRLEVFST 129
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 30/314 (9%), Positives = 76/314 (24%), Gaps = 45/314 (14%)
Query: 30 SADGLLLISCSEDDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAKQAAIHASTKIDDT 88
A +I + + + + D T ++ K+G + A
Sbjct: 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY-VLNNHYGD 63
Query: 89 VRYLSLHDNKYIRYFP------GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142
+ + L K + + + S +SP + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 143 ---------------GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD----------- 176
+ + +G ++ G + + +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 177 ------VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230
+ + E +T +F D + + + D G+
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQ 290
F + +P I G R+ ++ ++ + + DH +
Sbjct: 244 TQE--FADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH--TYYCVA 298
Query: 291 FNPKFNMMASACTN 304
F+ K + + T
Sbjct: 299 FDKKGDKLYLGGTF 312
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 15/154 (9%), Positives = 35/154 (22%), Gaps = 9/154 (5%)
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
A V + + + DV S + + + + D + +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGP--GTAMMAPDNRTAYVLN 58
Query: 215 NGS-IIRTFDAYNGQCLQTLAGFLNNKG---CPLEASFTPDSKYVISGSTDGRIHIWNAE 270
N I D + + +PD K V + + +
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 271 KGFK-VCVLDADHPSPVQTIQFNPKFNMMASACT 303
+ V + ++ P +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA 152
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.5 bits (122), Expect = 5e-08
Identities = 25/282 (8%), Positives = 57/282 (20%), Gaps = 46/282 (16%)
Query: 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-------FSKKYGVDLIRFTHAKQA 77
S D + ++D + FS V +I +
Sbjct: 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137
+ LS+ + + T GS ++ DL
Sbjct: 138 LLFFLFG-SSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLA 193
Query: 138 SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY----DVRSFDKG--------PF 185
+ N + ++ + D
Sbjct: 194 AAP----AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI 249
Query: 186 SNFKFAAEKE----CDWTGIKFSADGKYILISTNGSI---------IRTFDAYNGQCLQT 232
+ + + + + + I+I T + A GQ
Sbjct: 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309
Query: 233 LAGFLNNKGCPLEASFTPDSKY--VISGSTDGRIHIWNAEKG 272
++ D + + + I++A
Sbjct: 310 ISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.3 bits (98), Expect = 6e-05
Identities = 18/231 (7%), Positives = 47/231 (20%), Gaps = 28/231 (12%)
Query: 26 SIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84
I A LL ++ + A + +
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK----SASCFHIHPGAAATHYLGSC 183
Query: 85 IDDTVRYLSLHDNKYIRY------FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
++ L + + + +
Sbjct: 184 -PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG 242
Query: 139 PNCQGIM------------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ + +G + +A I + V L + S
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302
Query: 187 NFKFAAEKECD--WTGIKFSADGKYILISTNG--SIIRTFDAYNGQCLQTL 233
+ + I + DG + + ++ +DA + Q ++
Sbjct: 303 VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.3 bits (85), Expect = 0.002
Identities = 19/181 (10%), Positives = 32/181 (17%), Gaps = 19/181 (10%)
Query: 124 SGSYDKTVRLWDLRS---------PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
G V ++D + P+ I + S
Sbjct: 91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG 150
Query: 175 YDV--RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232
V S D+ S F T S +
Sbjct: 151 LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV-------G 203
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
A V + ++ A +D + S + F
Sbjct: 204 AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDG-NESGRKADNFR 262
Query: 293 P 293
Sbjct: 263 S 263
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.9 bits (84), Expect = 0.002
Identities = 12/169 (7%), Positives = 40/169 (23%), Gaps = 23/169 (13%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK 63
A+ + + G+L+ + + T K + +
Sbjct: 194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT---------------- 107
G F A + + + ++
Sbjct: 254 SGRKADNFRSAGFQMVAKL--KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311
Query: 108 --KKVNSLCLSPIDDT--FISGSYDKTVRLWDLRSPNCQGIMHVSGSRP 152
+++ + + + + + + + ++D S Q + + P
Sbjct: 312 NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL-DKGP 359
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.1 bits (120), Expect = 6e-08
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 80 HASTKIDDTVRYLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
A+ +D + S+ K I+ H VN+L T +S D ++ W+
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (114), Expect = 3e-07
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
++ ++ GH K + +L ++P+ ISGSYD + W S
Sbjct: 2 HDEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSSS 40
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 7e-07
Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 18/290 (6%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF 71
+V K + IT++ + LIS S D +I+ + + + +
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS-----NLIVSLDN 54
Query: 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
+ A++ + + + + ++ + D + +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
+ L SP + +A EG V SD +D+++ + S +
Sbjct: 115 KSVRLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171
Query: 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
+ G Y L S R + + +
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS-----WKPAEKGANEEEIE 226
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
V +GS D I I++ ++ K+ H V + + + + S+
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSS 275
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 4e-04
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI- 153
I + + +D +GS D + ++ ++ P + +
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262
Query: 154 -AAFDPEGLIFGVGVNSDTIKLYDV 177
++ + G ++ IK ++V
Sbjct: 263 NLLWETPSTLVSSGADA-CIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (85), Expect = 0.001
Identities = 30/265 (11%), Positives = 73/265 (27%), Gaps = 10/265 (3%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
D I + + + +++++ I S+D S +D V + + +
Sbjct: 30 DGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 89
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFIS 124
+ + D ++ + L+ + +T
Sbjct: 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV----AVGLEEGNTIQV 145
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
+DL++P ++S S + G + D S
Sbjct: 146 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTSRWAFR 204
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN-GQCLQTLAGFLNNKGCP 243
S + K + + + + + + I + + ++ L +K
Sbjct: 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA---HKDGV 261
Query: 244 LEASFTPDSKYVISGSTDGRIHIWN 268
+ S ++S D I WN
Sbjct: 262 NNLLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285
+ + L+T++G + + P +ISGS DGRI W++ + DH +
Sbjct: 2 HDEVLKTISG---HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ------DHSNL 48
Query: 286 VQTIQFNPKFNMMASACTNLAFWIPTYLSNHQ 317
+ ++ + + + +
Sbjct: 49 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFG 80
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 2e-07
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 6/132 (4%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGL 161
GH V + CL D+ I+G+ DK +R++D + + A + G+
Sbjct: 8 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRT 221
+ V+ T + V KG ++ I + KYI+ + + +
Sbjct: 67 L----VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 222 FDAYNGQCLQTL 233
+ +
Sbjct: 123 WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 2e-07
Identities = 31/307 (10%), Positives = 74/307 (24%), Gaps = 12/307 (3%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+ K + + ++ Y+ G+L +S S D + ++D + G V
Sbjct: 40 SINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY 127
+ K + D+T+ L + + F+
Sbjct: 99 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158
Query: 128 DKTVRLWDLRSPNCQ----------GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
+ + + V+ + + + K
Sbjct: 159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218
Query: 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237
S D E G + S F
Sbjct: 219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 278
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
+ + S ++ ++ + +I+N G V + ++ F K +
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TL 337
Query: 298 MASACTN 304
+A+ +
Sbjct: 338 VAAVEKD 344
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 7e-07
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 1/139 (0%)
Query: 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
+ +I+ ++D I +YD + GV +++ H ST V
Sbjct: 20 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRV 78
Query: 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG 149
+ ++ T + + ++GS D T+ +W L +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 150 SRPIAAFDPEGLIFGVGVN 168
P+ PE + VGV
Sbjct: 139 DYPLVFHTPEENPYFVGVL 157
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI- 153
N Y R F H ++++ + D + + +++LRS + + I
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 154 -AAFDPEGLIFGVGVNSDTIKLYD 176
F + L+ V L
Sbjct: 329 SVNFKGKTLVAAVE-KDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 8e-05
Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 11/189 (5%)
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
I S D+T+ + K + GHT ++ S IS S D T+R+WDL +
Sbjct: 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ + + + D + + +
Sbjct: 233 GELMYTLQGHTALVGLLRLSDKFLVSAA--------ADGSIRGWDANDYSRKFSYHHTNL 284
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
+ I IL+S + + ++ +G+ + L + +F V +
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFKGK-TLVAAV 341
Query: 259 STDGRIHIW 267
DG+ +
Sbjct: 342 EKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 86 DDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
++ +L K + ++ S+ + D L L
Sbjct: 302 ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEIL 352
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (111), Expect = 1e-06
Identities = 26/226 (11%), Positives = 54/226 (23%), Gaps = 18/226 (7%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
+ + + V+ LS D V + DL +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 146 HV---SGSRPIA---AFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC-- 196
+ S +R I E + D + + + + E
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 197 ----DWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
I S +++ + I D + L+T ++ + +
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE--ISAERFLHDGGLDGS 217
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
+Y I+ + + K K+ V D F
Sbjct: 218 HRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANFVH 262
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 37/317 (11%), Positives = 74/317 (23%), Gaps = 54/317 (17%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRT----VFSKKYGVDLIRFTHAKQAAIHA 81
SA G L D ++ + D + + S+ ++ + + A
Sbjct: 66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125
Query: 82 STKIDDTVRYLSLHDNKYIRYFP-----------GHTKKVNSLCLSPIDDTFI-SGSYDK 129
+ + + +V ++ S FI +
Sbjct: 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185
Query: 130 TVRLWDLRSPNCQGI-MHVSGSRP-IAAFDPEGLIFGVGVNSDTIKLYDVRSFDK----- 182
+ L D N + D F N+ + K
Sbjct: 186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 245
Query: 183 ---------GPFSNFKFAAEKECDWTG------IKFSADGKYILISTNGSIIRTFDAYNG 227
G +NF T + I+ +F A G
Sbjct: 246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG 305
Query: 228 QCLQTLAGFLNNKGCPLEASFTP-----------DSKYVISGSTDGRIHIWNAEKGFKVC 276
L + N++ ++A+ P D K + +D + +
Sbjct: 306 GSL-FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI- 363
Query: 277 VLDADHPSPVQTIQFNP 293
+ V +FN
Sbjct: 364 ---TEGQPRVVQGEFNK 377
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (107), Expect = 3e-06
Identities = 26/179 (14%), Positives = 50/179 (27%), Gaps = 24/179 (13%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----NKRTVF 60
+ E+ I YS L+ + +I D G
Sbjct: 178 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKI----------------DDTVRYLSLHDNKYIRYFP 104
++ D R +Q A H + V L + + F
Sbjct: 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 297
Query: 105 GHTKKVNSLCLSPIDDT--FISGSYDKTVRLWDLRSPNCQGIMHVSGSRP-IAAFDPEG 160
+++S+ +S + + + DKT+ + D S ++ G P + G
Sbjct: 298 MG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (104), Expect = 7e-06
Identities = 27/238 (11%), Positives = 57/238 (23%), Gaps = 28/238 (11%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP----------IDDTFISGSYDKT 130
A + + I G + + ++ + G
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 131 VRLWDLRSPNCQG-IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189
V ++D + I R + P + K F P
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-----TPDGKTLLFYQFSPAPAVGVV 134
Query: 190 FAAEKEC-------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242
K D I +A + + +GS+ + G T + +
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194
Query: 243 PL--EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298
L +++ + ++ + G+IH + G L A +
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG-DAKFLPAVEALTEAERADGWRPGGW 251
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 8e-05
Identities = 30/236 (12%), Positives = 59/236 (25%), Gaps = 28/236 (11%)
Query: 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84
+ DG L+ + +L I F A
Sbjct: 109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI-FPTAPDTFFMHCR- 166
Query: 85 IDDTVRYLSLHDNKYIR------YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
D ++ ++ + P +N S + +Y + DL S
Sbjct: 167 -DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 225
Query: 139 PNCQGIMHVSG--SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
+ + + V A G V + ++Y +
Sbjct: 226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 285
Query: 197 DW---------------TGIKFSADGKYILISTNGS--IIRTFDAYNGQCLQTLAG 235
D I S D K +L + + + DA +G+ L+++
Sbjct: 286 DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 32/309 (10%), Positives = 79/309 (25%), Gaps = 44/309 (14%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRT----VFSKKYGVDLIRFTHAKQAAIHA 81
SA G L+ D +I + D + + + V+ +F + A
Sbjct: 66 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPN 140
+ + + V++ P I S++ + +++
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 185
Query: 141 CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC---- 196
+++ + F D+ Y + + + + ++
Sbjct: 186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245
Query: 197 -------DWTGIKFSADGKYI----------LISTNGSIIRTFDAYNGQCLQTLAGFLNN 239
G F IS G+ + Y + + L G
Sbjct: 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG---Q 302
Query: 240 KGCPLEASFTPDSKYVI-------SGSTDGRIHIWNA---EKGFKV-----CVLDADHPS 284
G L P S ++ + +++ + ++V +
Sbjct: 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 362
Query: 285 PVQTIQFNP 293
V ++N
Sbjct: 363 RVVQPEYNK 371
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 18/167 (10%), Positives = 41/167 (24%)
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
++ + L D S ++ + I+ G V I + D+ + +
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
+ K E + + +Y + + +
Sbjct: 95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288
P +I+ + E G + V D + T
Sbjct: 155 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.0 bits (87), Expect = 0.001
Identities = 9/100 (9%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Query: 199 TGIKFSADGKYILISTN--GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
D + T I D + + ++ + + + +Y++
Sbjct: 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA----VHISRMSASGRYLL 77
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
D RI + + V + ++++ +
Sbjct: 78 VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.5 bits (83), Expect = 0.004
Identities = 27/245 (11%), Positives = 61/245 (24%), Gaps = 15/245 (6%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-- 143
+ + K ++ V+ +S + D + + DL +
Sbjct: 41 AGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99
Query: 144 -IMHVSGSRPIA---AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199
I +R + E G D + + +
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDGETLEPKQIVSTRGMTVD 155
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
+ + + I S N + + L + + ++ G
Sbjct: 156 TQTYHPEPRVAAII--ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213
Query: 260 TD--GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQ 317
D R + A KV V+D+ + + A + P + ++H
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273
Query: 318 EPDTI 322
+I
Sbjct: 274 GDGSI 278
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEG-LIFGVGVNSDTIKLYDVRS 179
+I+ S + + D+ S + V GS P+ P+G ++ +S+ + + D +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 180 FDKGPFSNFKFAAEKECDW 198
+ + +
Sbjct: 64 NNVIATVPAGSSPQGVAVS 82
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.7 bits (88), Expect = 7e-04
Identities = 29/271 (10%), Positives = 63/271 (23%), Gaps = 17/271 (6%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSK 62
++ V + V S DG + ++ + + + I D TN
Sbjct: 21 SNKVTATIPVG-------SNPMGAVISPDGTKVYVANAHSNDVSIID--TATNNVIATVP 71
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
++ + T+ + N K L LSP
Sbjct: 72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKL 130
Query: 123 ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182
+ G P N D++ + + +
Sbjct: 131 YVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190
Query: 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242
K A + + + ++ + + +
Sbjct: 191 SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG-TNKITARIPVGPD---- 245
Query: 243 PLEASFTPDSKYV-ISGSTDGRIHIWNAEKG 272
P + TPD K V ++ S + + +
Sbjct: 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 36.4 bits (82), Expect = 0.004
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRS 138
K +TV + NK P + ++P +++ S+ TV + D +
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Query: 139 PNCQGIMHVSGSRPIA 154
M V G P A
Sbjct: 276 NTITATMAV-GKNPYA 290
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 30/271 (11%), Positives = 65/271 (23%), Gaps = 21/271 (7%)
Query: 19 ENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD---LIRFTHA 74
+ ++ + S D L + + +++ Y T ++ I H
Sbjct: 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDTFISGSYD-KTVR 132
Q S + +S +SP + T + +
Sbjct: 94 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC 153
Query: 133 LWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF----------GVGVNSDTIKLYDVRSFDK 182
L+ + + + P ++F +S + +
Sbjct: 154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 213
Query: 183 GPFSNFKFAAEKECDWTGIKFSA----DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238
E D S+I F + + GF
Sbjct: 214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 273
Query: 239 NKGCPLEASFTPDSKYVI-SGSTDGRIHIWN 268
+ P + KY+I +G I ++
Sbjct: 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 36.7 bits (83), Expect = 0.003
Identities = 15/172 (8%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 122 FISGSYDKTVRLWDLRSPNC----QGIMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYD 176
+I+ + + +W+L Q + +P+ P+ ++ + Y
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPM-VVSPDKRYLYVGVRPEFRVLAYR 65
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
+ F + T I G+++ + + + + +
Sbjct: 66 IAP--DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288
+ A+ +PD++ + + V
Sbjct: 124 VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 175
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 12/142 (8%)
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG-- 258
K+ +D ++I G++ ++ + G + +PD +Y +
Sbjct: 22 AKWISDTEFIYREQKGTVRL-WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN 80
Query: 259 -------STDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASACTNLAFWIP 310
S G + G + + + +Q + PK + N ++
Sbjct: 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCA 140
Query: 311 TYLSN-HQEPDTIDNLKIYLGV 331
+ T IY G+
Sbjct: 141 HVGKQAIRVVSTGKEGVIYNGL 162
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 36.8 bits (85), Expect = 0.003
Identities = 29/221 (13%), Positives = 53/221 (23%), Gaps = 28/221 (12%)
Query: 84 KIDDTVRYLSLHDNKYIRYFP-GHTKKV-----NSLCLSPIDDTFISGSYDKTVRLWDLR 137
K D ++ +R T V + F + D
Sbjct: 105 KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE 164
Query: 138 SPNCQGIMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSF---DKGPFSNFKFAAE 193
+ + + V G+ D G NS+ D N +
Sbjct: 165 TMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE---- 220
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
G + I + + + ++ P + +PD K
Sbjct: 221 -----RIAAAVKAGNFKTIGDSKVPVVDGRGESE-----FTRYIPVPKNPHGLNTSPDGK 270
Query: 254 Y-VISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
Y + +G + + +K L D TI P
Sbjct: 271 YFIANGKLSPTVSVIAIDKLDD---LFEDKIELRDTIVAEP 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.8 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.56 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.42 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.36 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.27 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.24 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.16 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.13 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.1 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.08 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.96 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.95 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.83 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.8 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.79 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.56 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.42 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.26 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.99 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.48 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.3 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.25 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.02 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.92 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.85 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.83 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.65 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.33 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.79 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.41 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.19 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.06 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.44 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.83 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 89.79 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.49 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.12 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 87.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 86.63 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 84.23 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.01 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.37 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.42 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-41 Score=292.18 Aligned_cols=287 Identities=21% Similarity=0.377 Sum_probs=243.6
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+...+|+||+++|++|+|+|++++|||||.||+|+|||+++++....+..|...|..+++.++... ++.+..++.+.+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~--~~~~~~~~~~~~ 85 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL--LASCSADMTIKL 85 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE--EEEEETTSCCCE
T ss_pred CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccc--cccccccccccc
Confidence 345679999999999999999999999999999999999999999999889999999999886654 445557889999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCC
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
|+....+....+.+|...+.++.++|+++.+++++.|+.+++||+++++....+. +......+.+++++.++++++.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence 9999999899999999999999999999999999999999999999988766553 344456778999999999999999
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccC--------------------CCEEEEEeCCCeEEEEECCCCeee
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--------------------GKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
.+++|+++... .... ...+...+..++++|+ +.++++++.|+.|++||..+++++
T Consensus 166 ~v~~~~~~~~~--~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 166 TVRVWVVATKE--CKAE---LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp CEEEEETTTCC--EEEE---ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEEeeccce--eeEE---EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence 99999997632 1111 1222333445555544 567899999999999999999998
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
.++.+ +...+.+++|+|++++|++|+.||.|++||+.++..+..+. +|.++|++++|+|++++|++|+ +.|++|
T Consensus 241 ~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW 316 (317)
T d1vyhc1 241 MTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316 (317)
T ss_dssp EEEEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred EEEeC---CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence 88765 45678899999999999999999999999999988877775 5999999999999999999986 568888
Q ss_pred c
Q psy16316 309 I 309 (335)
Q Consensus 309 ~ 309 (335)
.
T Consensus 317 d 317 (317)
T d1vyhc1 317 E 317 (317)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.2e-41 Score=293.55 Aligned_cols=283 Identities=11% Similarity=0.190 Sum_probs=233.8
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee-----eeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR-----TVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+...++ +|...|.+++|+|+|++||||+ ||+|+|||++++.... ....|...|..++|++++.. +++++.|
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~--l~s~~~d 118 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT--LIVGGEA 118 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE--EEEEESS
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE--EEEeecc
Confidence 334444 8999999999999999999998 8999999998765432 22346677999999987654 5566789
Q ss_pred CeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEE
Q psy16316 87 DTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 87 ~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (335)
+.|++||+... +....+.+|...|.+++|+|++..+++++.|+.|++||+.++++..... +...+..+++++++..+
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~ 198 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999998744 5567788999999999999999999999999999999999877655442 34445677899999999
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
++++.|+.+++||++..+ ....+ .....+.+++|+|+++++++++.++.+++||+.+++.... ..+...+
T Consensus 199 ~~~~~d~~v~i~d~~~~~--~~~~~----~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~i 268 (337)
T d1gxra_ 199 WTGGLDNTVRSWDLREGR--QLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----HLHESCV 268 (337)
T ss_dssp EEEETTSEEEEEETTTTE--EEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE----CCCSSCE
T ss_pred ccccccccccccccccce--eeccc----ccccceEEEEEcccccccceeccccccccccccccccccc----ccccccc
Confidence 999999999999997632 22222 2345678999999999999999999999999998876543 2355678
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
.+++|+|++++|++|+.||.|++||..++..+... .|.++|++++|+|++++|++|+ +.|++|.+
T Consensus 269 ~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 89999999999999999999999999998877665 4789999999999999999986 56999964
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-40 Score=293.70 Aligned_cols=286 Identities=20% Similarity=0.385 Sum_probs=227.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee------------------cccccceEEEEecCCCeeEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF------------------SKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 80 (335)
+|++.|+||+|+|||++||||+ |++|+|||+.+++....+. .+...|..++|++++. .+
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l 136 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FL 136 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS--EE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC--cc
Confidence 7999999999999999999997 8999999999887655443 2344578899988655 45
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc-eEEECCC
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP-IAAFDPE 159 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (335)
++++.|+.|++|+...++.+..+.+|...|.++++++++..+++++.|+.+++||+++.............. +..+.++
T Consensus 137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216 (388)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence 667789999999999999999999999999999999999999999999999999999876665544433333 3445568
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEE----eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee--
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFK----FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL-- 233 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-- 233 (335)
+.++++++.|+.+++||.++... ...+. ....+...+.+++|+|++++|++++.|+.|++||+.+++.....
T Consensus 217 ~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 217 GKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp CCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCeEEEEcCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence 89999999999999999976431 11111 11234556889999999999999999999999999876543221
Q ss_pred -------cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEE------eCCCCcEEEe
Q psy16316 234 -------AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQ------FNPKFNMMAS 300 (335)
Q Consensus 234 -------~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~------~sp~~~~~~s 300 (335)
.....+...+.+++|+|++++|++|+.||.|++||+.++..+..+. +|.++|.+++ |+|++.+||+
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEEecCcccCCCCCEEEE
Confidence 1123355678899999999999999999999999999998888875 5999999987 5789999999
Q ss_pred ee--ceeEEecc
Q psy16316 301 AC--TNLAFWIP 310 (335)
Q Consensus 301 ~~--~~~~~w~~ 310 (335)
|+ +.|++|.+
T Consensus 374 ~s~Dg~I~iW~~ 385 (388)
T d1erja_ 374 GSGDCKARIWKY 385 (388)
T ss_dssp EETTSEEEEEEE
T ss_pred EeCCCEEEEEee
Confidence 86 57899975
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.4e-38 Score=275.10 Aligned_cols=289 Identities=21% Similarity=0.297 Sum_probs=238.4
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+++.++|+||+++|++++|+|++++|||||.||+|+|||+.+++....+..|...+..++|.+++. .+++++.|+.++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~ 122 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN--YVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS--EEEEEETTCCEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce--eeeeecccceee
Confidence 456788999999999999999999999999999999999999999988888999999999988765 455666799999
Q ss_pred EEEcCCC----ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEE
Q psy16316 91 YLSLHDN----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 91 ~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (335)
+|+.... .....+.+|..........+ +..+.....|...+.|+.......... ..........+.+.+.++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 9997654 34566788888776665554 567888889999999998765443332 22333455678889999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
+..|+.+++||++... +. .....+...+.+++|+|++.+|++++.|+.|++||+...+....+.. ..+...+..
T Consensus 202 ~~~d~~v~i~d~~~~~--~~---~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~-~~~~~~i~~ 275 (340)
T d1tbga_ 202 GACDASAKLWDVREGM--CR---QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITS 275 (340)
T ss_dssp EETTTEEEEEETTTTE--EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEE
T ss_pred eecCceEEEEECCCCc--EE---EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc-ccccCceEE
Confidence 9999999999997632 12 22234566789999999999999999999999999999887766543 234456788
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
++|+|++++|++|+.||.|++||..++..+..+. +|.++|++++|+|++++|++|+ +.|++|+
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999998888875 6999999999999999999886 5699995
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.8e-39 Score=276.58 Aligned_cols=289 Identities=17% Similarity=0.264 Sum_probs=225.0
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
++.++++||+++|++++|+|+|++|||||.||+|++||+++++..+.+. .|...+..++|.+++. + ++++.|+.++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~-~~~~~d~~v~ 79 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--L-FTVSWDDHLK 79 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--E-EEEETTTEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--e-ecccceeeEE
Confidence 4678999999999999999999999999999999999999998887764 4677899999998764 2 3344699999
Q ss_pred EEEcCCCce---EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEE
Q psy16316 91 YLSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 91 ~~~~~~~~~---~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
+|+...... ......|...+.+++++|+++.+++++ ++.+++|+... ............++++|+++++++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred EeccCCccccccccccccccccccccccccccccccccc-ccccccccccc---cccccccccccccccccccccccccc
Confidence 999865432 223346788899999999998776664 67899999542 12223344556788999999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
.|+.+++||++... ..... ...+...+.+++|+|++.++++++.++.|++||+.++...........|...+.+++
T Consensus 156 ~dg~i~~~d~~~~~---~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 231 (299)
T d1nr0a2 156 QDSKVHVYKLSGAS---VSEVK-TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231 (299)
T ss_dssp TTSEEEEEEEETTE---EEEEE-EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred cccccccccccccc---ccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997532 11111 123455688999999999999999999999999998877666655556677889999
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCee--EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFK--VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
|+|++++|++|+.||.|++||+.++.. .......+...|..+.| |++.+|++++ +.|++|++++
T Consensus 232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECCC
T ss_pred ccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEeccC
Confidence 999999999999999999999987542 22333334456766655 5567888775 5799998753
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.8e-39 Score=277.83 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=212.9
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce--eeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+...+.+.|.+|.+.|++++|+|+|++||+|+.||+|+|||+..++.. ..+..+...+..++|++++...+.++.+.+
T Consensus 46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~ 125 (311)
T d1nr0a1 46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125 (311)
T ss_dssp TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence 456778889999999999999999999999999999999999988654 345667888999999998777666666667
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (335)
..+++|++++++....+.+|...|++++|+|+++ .|++|+.|+.|++||+++++...... +...+..+.++|++++++
T Consensus 126 ~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~ 205 (311)
T d1nr0a1 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 205 (311)
T ss_dssp CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccc
Confidence 8899999999999999999999999999999987 48899999999999999877665442 244556788999999999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEe----ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCC
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKF----AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
+++.|+.+++||++.... ...+.. ...+...+.+++|+|++++|++++.|+.|++||++++++++++..+....
T Consensus 206 ~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~ 283 (311)
T d1nr0a1 206 STGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283 (311)
T ss_dssp EEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred cccccccccccccccccc--cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc
Confidence 999999999999976321 111111 12245568899999999999999999999999999999998887654333
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
..+ +.+.+++++|++++.||.|++||.+
T Consensus 284 ~~~--~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 284 DQQ--LGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp GCE--EEEEECSSCEEEEETTCCEEEEETT
T ss_pred ceE--EEEEecCCEEEEEECCCEEEEEeCC
Confidence 333 4455566789999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-37 Score=270.22 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=227.3
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
..+.+.+.+++++|+|..||.++ ++.+.+||+++......+.+|...|.+++|+|++. ++++++.|++|++||+.++
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESSST
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCC--eEeccccCceEeeeeeecc
Confidence 34666778899999999999985 66799999999988888888999999999998754 5667778999999999887
Q ss_pred ceE--eeecCCCCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEE-EecCCcceEEECCCCC-EEEEEEcCCe
Q psy16316 98 KYI--RYFPGHTKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGL-IFGVGVNSDT 171 (335)
Q Consensus 98 ~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~d~~ 171 (335)
+.. ..+++|..+|.+++|+|++++|++++. |..+++||+.+++....+ .+...+..+.|+|++. .+++|+.|++
T Consensus 91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~ 170 (311)
T d1nr0a1 91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170 (311)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 643 568899999999999999999999986 566999999987765443 2234456678999887 4888999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc----ccCCCCceEEE
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF----LNNKGCPLEAS 247 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~ 247 (335)
|++||+++.. .......+...+.++.++|+++++++++.|+.|++||..+++....+... ..|...|.+++
T Consensus 171 i~i~d~~~~~-----~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 245 (311)
T d1nr0a1 171 VAIFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245 (311)
T ss_dssp EEEEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred cccccccccc-----cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999997532 22233345667889999999999999999999999999998877666432 23556789999
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCC--CCeEEEEeCCCCcEEEeeeceeEEeccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP--SPVQTIQFNPKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~--~~v~~v~~sp~~~~~~s~~~~~~~w~~~ 311 (335)
|+|++++|++|+.||.|+|||..++.....+...+. ..+.++.|+++.-+.++.++.+++|+++
T Consensus 246 ~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999999999999999999999999988777754332 3455566665543333335789999864
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-36 Score=270.17 Aligned_cols=287 Identities=14% Similarity=0.160 Sum_probs=221.6
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+.++|+|++|+|||++||+|+.||.|+|||.++++ ....+.+|...|..++|+|++. .+++++.|+++++||+.++
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 34789999999999999999999999999998875 4556678899999999998765 4556678999999999876
Q ss_pred ce--EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-----ecCCcceEEECCCCCEEEEEEcCC
Q psy16316 98 KY--IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-----VSGSRPIAAFDPEGLIFGVGVNSD 170 (335)
Q Consensus 98 ~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~ 170 (335)
.. ...+.+|...|.+++|+|+++.|++|+.|+++++|++.......... +...+..+.|+|++.++++|+.|+
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~ 163 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence 54 45567899999999999999999999999999999987765443321 123445678999999999999999
Q ss_pred eEEEEEccCCCCCc-------------eeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 171 TIKLYDVRSFDKGP-------------FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 171 ~v~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++++||+....... .........+...+.+++|+|++++|++++.|+.|++||+.+++++..+..
T Consensus 164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-- 241 (371)
T d1k8kc_ 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-- 241 (371)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC--
T ss_pred EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec--
Confidence 99999986532110 011122234445678899999999999999999999999999988887765
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC--CeeEE--------------------------------------E
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK--GFKVC--------------------------------------V 277 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~--~~~~~--------------------------------------~ 277 (335)
+...+.+++|+|++++|++|+ |+.+++|+... +.... .
T Consensus 242 -~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
T d1k8kc_ 242 -ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 319 (371)
T ss_dssp -SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred -ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccce
Confidence 445688999999999888776 66666654322 11100 0
Q ss_pred eCCCCCCCeEEEEeCCCC----cEEEeee--ceeEEecccc
Q psy16316 278 LDADHPSPVQTIQFNPKF----NMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 278 ~~~~h~~~v~~v~~sp~~----~~~~s~~--~~~~~w~~~~ 312 (335)
+...|.+.|++++++|.+ ..++|++ +.+++|+.+.
T Consensus 320 ~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 012388899999998754 3577775 6799998744
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-36 Score=262.33 Aligned_cols=242 Identities=21% Similarity=0.304 Sum_probs=208.3
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...+|++.|.+++|+|+|++|++|+.||+|++||+.... ....+..+...+..+.+.++.. .+++++.|+.+++|+
T Consensus 92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~ 169 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWD 169 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence 346899999999999999999999999999999987543 3445566777788888887654 455666799999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
+.+++......+|...|.+++|+++++.+++|+.|+.+++||+++++..........+..++++|++.++++++.++.++
T Consensus 170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~ 249 (337)
T d1gxra_ 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccc
Confidence 99999999999999999999999999999999999999999999988777776677777788999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
+||++... .. ....+...+.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|+++
T Consensus 250 i~d~~~~~---~~---~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~d~~ 319 (337)
T d1gxra_ 250 VLHVNKPD---KY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDK 319 (337)
T ss_dssp EEETTSSC---EE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSC
T ss_pred cccccccc---cc---cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----CCCCEEEEEEeCCCC
Confidence 99997632 11 123445678899999999999999999999999999998876653 456788999999999
Q ss_pred EEEEEeCCCcEEEEEC
Q psy16316 254 YVISGSTDGRIHIWNA 269 (335)
Q Consensus 254 ~l~tgs~dg~v~iwd~ 269 (335)
+||+|+.||+|+|||+
T Consensus 320 ~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 320 YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEEEE
Confidence 9999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.6e-36 Score=258.88 Aligned_cols=280 Identities=21% Similarity=0.337 Sum_probs=208.8
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
..+++.++|+||++.|.+ .++++|++|||||.||+|+|||+++++.+..+.+|...|..++|.++ .+++++.|+.
T Consensus 4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~----~l~s~s~D~~ 78 (342)
T d2ovrb2 4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN----IIISGSTDRT 78 (342)
T ss_dssp SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT----EEEEEETTSC
T ss_pred CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC----ccccceeccc
Confidence 467888999999999865 36678999999999999999999999999999999999999999763 5667778999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEE--------------------------------------CCCCCEEEEeeCCCc
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCL--------------------------------------SPIDDTFISGSYDKT 130 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~--------------------------------------~~~~~~l~s~s~D~~ 130 (335)
+++|+............+...+..... .+....+++++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 158 (342)
T d2ovrb2 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158 (342)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence 999988766554444433333332222 222345666667777
Q ss_pred EEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEE
Q psy16316 131 VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210 (335)
Q Consensus 131 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 210 (335)
|++||++...+...+. ........+.+++..+++++.|++|++||++... .. .....+...+.++++ ++++|
T Consensus 159 i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~--~~---~~~~~~~~~v~~~~~--~~~~l 230 (342)
T d2ovrb2 159 VKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN--CI---HTLTGHQSLTSGMEL--KDNIL 230 (342)
T ss_dssp EEEEEGGGTEEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC--EE---EEECCCCSCEEEEEE--ETTEE
T ss_pred EEEeecccceeeEEEc-CcccccccccCCCCEEEEEeCCCeEEEeecccce--ee---eEecccccceeEEec--CCCEE
Confidence 7777766554433321 2223445566788999999999999999997632 22 222233444555544 56799
Q ss_pred EEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC----CCCCCCe
Q psy16316 211 LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD----ADHPSPV 286 (335)
Q Consensus 211 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~----~~h~~~v 286 (335)
++++.|+.|++||....+....+..+..+...+.++.+ +++++++|+.||+|++||+.++..+..+. .+|.++|
T Consensus 231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v 308 (342)
T d2ovrb2 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 308 (342)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred EEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence 99999999999999999888888777666666655555 45799999999999999999987766542 3577889
Q ss_pred EEEEeCCCCcEEEeeec
Q psy16316 287 QTIQFNPKFNMMASACT 303 (335)
Q Consensus 287 ~~v~~sp~~~~~~s~~~ 303 (335)
++++|+|++.++|+|+.
T Consensus 309 ~~v~~s~~~~~la~g~~ 325 (342)
T d2ovrb2 309 WRIRASNTKLVCAVGSR 325 (342)
T ss_dssp EEEEECSSEEEEEEECS
T ss_pred EEEEECCCCCEEEEEeC
Confidence 99999999999999863
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-33 Score=245.10 Aligned_cols=280 Identities=19% Similarity=0.278 Sum_probs=215.0
Q ss_pred eeeeccCCccE-EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 14 AKLFRENTDKI-TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 14 ~~~~~~h~~~V-~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+|+||.+.| +|++| +|++|||||.||+|+|||+++++.+..+.+|...|..++|+++. .+++++.|+++++|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~iw 79 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---EEEEEETTCCEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---EEEEEecccccccc
Confidence 56799999886 66655 68899999999999999999999999999999999999998753 46677889999999
Q ss_pred EcCCCceEeeecCCC--CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE----------------------ec
Q psy16316 93 SLHDNKYIRYFPGHT--KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH----------------------VS 148 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~----------------------~~ 148 (335)
+....+.......+. ..+....+.+++..+++++.|+.|++||+++........ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 999988776655443 345566778888999999999999999998754322110 11
Q ss_pred CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q psy16316 149 GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
....+....+++++++++..|+.+++||+++.+ ..............+.++|++.++++++.|+.|++||.+++.
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 234 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 234 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred ccccccccccccceeeeecccceeeeeeccccc-----ceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence 122334566778999999999999999997632 122222334456788999999999999999999999999999
Q ss_pred eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEE-EeCCCCcEEEeee-ceeE
Q psy16316 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTI-QFNPKFNMMASAC-TNLA 306 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v-~~sp~~~~~~s~~-~~~~ 306 (335)
++..+.+| ...+.+++|+| ++|++|+.||.|++||..+..+.... |...+..+ .|+|++.++++|+ +.++
T Consensus 235 ~~~~~~~h---~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~d~~i~ 306 (355)
T d1nexb2 235 LMYTLQGH---TALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGSENQFN 306 (355)
T ss_dssp EEEEECCC---SSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEE---ECTTCCCCCEEEECSSEEEEEETTEEE
T ss_pred cccccccc---ccccccccccc--ceeeeeecccccccccccccceeccc---ccCCceEEEEEcCCCCEEEEEeCCEEE
Confidence 88887764 45567777764 69999999999999999887765443 34444454 5678888888775 6799
Q ss_pred Eeccc
Q psy16316 307 FWIPT 311 (335)
Q Consensus 307 ~w~~~ 311 (335)
+|.+.
T Consensus 307 vwd~~ 311 (355)
T d1nexb2 307 IYNLR 311 (355)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99753
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-34 Score=249.81 Aligned_cols=294 Identities=13% Similarity=0.090 Sum_probs=216.0
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee---eecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT---VFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
++++..++|++.|++|+|+|+|++|||||.||+|+|||++++..... ...|...|.+++|.++.. .++++++.|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~-~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-LQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-EEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC-CEEEEcccccc
Confidence 56788899999999999999999999999999999999987765333 346788899999988654 35567778999
Q ss_pred EEEEEcCCCceEeeecCCCCC-eEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--c-----CCcceEEECCCC
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKK-VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--S-----GSRPIAAFDPEG 160 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~-V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~-----~~~~~~~~~~~~ 160 (335)
+++|++...........+... .....+.++...+++++.|+++++||++.......... . .......+.+.+
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence 999999888777666555444 44555666788999999999999999976554332211 1 112344667788
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceE-EEEccCCCEEEEEeCCCeEEEEECCCCeee---------
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG-IKFSADGKYILISTNGSIIRTFDAYNGQCL--------- 230 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~--------- 230 (335)
..+++++.|+.+++||++.......... .......... ..+++++..+++++.++.+.+|+.......
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIE--ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEE--ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred CceeeecCCCcEEEEecccCcccceeee--ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 8999999999999999986543222221 1122222333 344567788999999999999987643221
Q ss_pred ---eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece--e
Q psy16316 231 ---QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN--L 305 (335)
Q Consensus 231 ---~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~--~ 305 (335)
+.......+...+.+++|+|++++||||+.||.|++||+.++.++..+...| ++..++|+|++.++++++++ +
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~~a~sdd~~ 316 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLATSDDTF 316 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEEEEEECTHH
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCCEEEEEEcCCcE
Confidence 1112233455567889999999999999999999999999998887765444 45567788888888877543 5
Q ss_pred EEecc
Q psy16316 306 AFWIP 310 (335)
Q Consensus 306 ~~w~~ 310 (335)
++|..
T Consensus 317 ~~~~~ 321 (342)
T d1yfqa_ 317 KTNAA 321 (342)
T ss_dssp HHCSS
T ss_pred EEeee
Confidence 66654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.5e-33 Score=241.76 Aligned_cols=253 Identities=14% Similarity=0.187 Sum_probs=194.9
Q ss_pred ccceeeeccC-CccEEEEEECC--CCCEEEEecCCCeEEEEEccCCcceee--------eecccccceEEEEecCCCeeE
Q psy16316 11 YKVAKLFREN-TDKITSIDYSA--DGLLLISCSEDDQIVIYDCELGTNKRT--------VFSKKYGVDLIRFTHAKQAAI 79 (335)
Q Consensus 11 ~~~~~~~~~h-~~~V~~v~~s~--~g~~lasgs~Dg~i~lwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 79 (335)
+.....+.+| ...|++++|+| +|.+||||+.||+|+|||+..++.... ...+..++..++|++++...+
T Consensus 52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 131 (325)
T d1pgua1 52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131 (325)
T ss_dssp SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence 4556678887 56899999998 678999999999999999976654332 233556789999999888877
Q ss_pred EeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEe----cCCcceE
Q psy16316 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHV----SGSRPIA 154 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~----~~~~~~~ 154 (335)
.++++.++.+++|+.++++.+..+++|...|++++|+|+++ .+++++.|+.+++||+...+....... ...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v 211 (325)
T d1pgua1 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 211 (325)
T ss_dssp EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred eeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence 77878899999999999999999999999999999999886 478899999999999987654433311 2234567
Q ss_pred EECCC-CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEc---cCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 155 AFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS---ADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 155 ~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
+|+|+ +.++++++.|+.|++||+++.+ ... ....+...+.++.|+ |++++|++++.|+.|++||+++++++
T Consensus 212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~---~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~ 286 (325)
T d1pgua1 212 EFSPDSGEFVITVGSDRKISCFDGKSGE--FLK---YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286 (325)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCC--EEE---ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeccccceeccccccccceeeeeecccc--ccc---cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 89996 6899999999999999997642 122 222233333444444 68999999999999999999999998
Q ss_pred eeecccccCCCCceEEEEcCC-CcEEEEEeCCCcEEEEEC
Q psy16316 231 QTLAGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~-~~~l~tgs~dg~v~iwd~ 269 (335)
+.+..+..... ...+++.+. +.+|++||.||+|++||+
T Consensus 287 ~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 287 QKWTLDKQQLG-NQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEECCTTCGG-GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEecCCccc-CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 88765543322 233444332 358999999999999985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-33 Score=240.99 Aligned_cols=270 Identities=16% Similarity=0.189 Sum_probs=206.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.++|+||+++|++++|+| |+|||.||+|++||+.++. ..|...|..+.+.+... +++++.|++++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~---~~s~s~D~~v~ 70 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQE---YSSISWDDTLK 70 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTC---CEEEETTTEEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCe---EEEEeeccccc
Confidence 468899999999999999998 9999999999999987543 35677788888875432 45667899999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC-
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS- 169 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 169 (335)
+|++...+ +...+.++++++++..++++ .++.+.+|+..++.....+.... +..++.+++..+++++.+
T Consensus 71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 71 VNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS--PGSAVSLSQNYVAVGLEEG 140 (287)
T ss_dssp ETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS--CEEEEEECSSEEEEEETTT
T ss_pred cccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc--eeeeeeccCcceeeecccc
Confidence 99875432 23467788898887766665 56678899988887766554433 455677788888887776
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
+.+++|++.... ........+...+.+++|+|++.+|++++.++.|++||+.+++..... ...|...+.+++|+
T Consensus 141 ~~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 141 NTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWK 214 (287)
T ss_dssp SCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEEC
T ss_pred ceeeeeeccccc----eeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc--ccccccccceeeec
Confidence 479999986421 122223334556789999999999999999999999999988765432 22345668889998
Q ss_pred CC----------CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 250 PD----------SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 250 p~----------~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
|+ +.+||+|+.|++|++||+.++.+......+|.+.|++++|+|++. +++++ +.+++|.
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEE
Confidence 75 468999999999999999875544445567999999999999875 45554 6799995
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-33 Score=250.81 Aligned_cols=284 Identities=15% Similarity=0.285 Sum_probs=205.7
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce------eeeecccccceEEEE---ec--CCCeeEEee
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK------RTVFSKKYGVDLIRF---TH--AKQAAIHAS 82 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~------~~~~~~~~~~~~~~~---~~--~~~~~~~~~ 82 (335)
....++|.+.|+++++++ ++++|||.|++|+|||..+.... .....+..++..+.. .+ .....++++
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 355789999999999865 68999999999999998765421 112223333222211 11 123356677
Q ss_pred cCCCCeEEEEEcCCCceEee--------e--cCCCCCeEEEEECCC-----CCEEEEeeCCCcEEEeecCCCCc------
Q psy16316 83 TKIDDTVRYLSLHDNKYIRY--------F--PGHTKKVNSLCLSPI-----DDTFISGSYDKTVRLWDLRSPNC------ 141 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~--------~--~~H~~~V~~~~~~~~-----~~~l~s~s~D~~i~vWd~~~~~~------ 141 (335)
++.|+.+++|++........ + ..+...+.++++.++ +.++++++.|+++++||+.....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 88899999999864432111 1 235566888888765 35789999999999999853221
Q ss_pred ---ee---EEE-------ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEe---ccCCCccceEEEEcc
Q psy16316 142 ---QG---IMH-------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF---AAEKECDWTGIKFSA 205 (335)
Q Consensus 142 ---~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~ 205 (335)
.. ... .......++++|++ ++++|+.|++|++||+++.+ +...+.. ...+...+.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~--~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc--cccccccccccccccceEEEccccc
Confidence 00 000 01123467899987 88999999999999997632 2222221 234566789999999
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCeeeeeecc----------cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 206 DGKYILISTNGS---IIRTFDAYNGQCLQTLAG----------FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 206 ~~~~l~~~~~~~---~i~i~d~~~~~~~~~~~~----------~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
++++|++++.|+ .|++||+.+++++..+.. ..+|...|.+++|+|++++|+|||.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 999999999886 599999999988877642 1346678999999999999999999999999999999
Q ss_pred eeEEEeCCCCCCCeE----EEEeCCCCcEEEeeec
Q psy16316 273 FKVCVLDADHPSPVQ----TIQFNPKFNMMASACT 303 (335)
Q Consensus 273 ~~~~~~~~~h~~~v~----~v~~sp~~~~~~s~~~ 303 (335)
..+..+. +|.++|. .++|+|++..+++++.
T Consensus 322 ~~~~~l~-gH~~~v~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T d1sq9a_ 322 ERITTLN-MHCDDIEIEEDILAVDEHGDSLAEPGV 355 (393)
T ss_dssp EEEEEEE-CCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred CEEEEEC-CcCCcccCCccEEEECCCCCEEEEccc
Confidence 9888885 6988876 4899999999887753
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-32 Score=245.20 Aligned_cols=249 Identities=18% Similarity=0.204 Sum_probs=197.3
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
..+|...|++++|+|+|++|++|+.||+|++||...++......+|...+..+.+.+..... +.++.++.+++||..+
T Consensus 117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--~~~~~~~~i~~~d~~~ 194 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL--VSGSGDRTVRIWDLRT 194 (388)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE--EEEETTSEEEEEETTT
T ss_pred ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccc--cccccceeeeeeeccc
Confidence 35788899999999999999999999999999999999888888888899999998765543 4455799999999999
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE--------ecCCcceEEECCCCCEEEEEEc
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--------VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
.........|...+..+.+.+++++|++|+.|+.|++||++++.....+. +...+..+.++|++.++++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 274 (388)
T d1erja_ 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274 (388)
T ss_dssp TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 88888777666555544445578999999999999999999877654432 1234556789999999999999
Q ss_pred CCeEEEEEccCCCCCce-------eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC
Q psy16316 169 SDTIKLYDVRSFDKGPF-------SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
|+.+++||++....... ........+...+.+++|+|++++|++++.|+.|++||+++++++.++.+|. .
T Consensus 275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~---~ 351 (388)
T d1erja_ 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR---N 351 (388)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS---S
T ss_pred CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC---C
Confidence 99999999976432111 0111122344567889999999999999999999999999999999887754 4
Q ss_pred CceEEE------EcCCCcEEEEEeCCCcEEEEECC
Q psy16316 242 CPLEAS------FTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 242 ~v~~~~------~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.|.+++ |+|++++||||+.||+|+||+++
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 455554 67899999999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.7e-33 Score=245.33 Aligned_cols=245 Identities=13% Similarity=0.182 Sum_probs=194.4
Q ss_pred ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc
Q psy16316 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 141 (335)
.+|.+++|++++. .+++++.|+.|++||+.+++ .+..+++|.++|++++|+|++++|+||+.|++|++||+.++..
T Consensus 8 ~pIt~~~~s~dg~--~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 8 EPISCHAWNKDRT--QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp SCCCEEEECTTSS--EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCeEEEEECCCCC--EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 5688999998765 44556679999999998775 5677899999999999999999999999999999999987655
Q ss_pred eeEEE---ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe
Q psy16316 142 QGIMH---VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI 218 (335)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~ 218 (335)
..... +...+..+.|+|+++.+++++.++++++|++...... .........+...+.+++|+|++++|++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeeccccc-ccccccccccccccccccccccccceeccccCcE
Confidence 44332 2344567889999999999999999999998764322 1112223345567889999999999999999999
Q ss_pred EEEEECCCCeeee---------------eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCC
Q psy16316 219 IRTFDAYNGQCLQ---------------TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP 283 (335)
Q Consensus 219 i~i~d~~~~~~~~---------------~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~ 283 (335)
|++|+........ .+.....+...+.+++|+|++++|++++.|+.|++||..++..+..+. .|.
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~ 243 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SET 243 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSS
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee-ccc
Confidence 9999986543111 111223455668889999999999999999999999999888877775 588
Q ss_pred CCeEEEEeCCCCcEEEeee-ceeEEecccc
Q psy16316 284 SPVQTIQFNPKFNMMASAC-TNLAFWIPTY 312 (335)
Q Consensus 284 ~~v~~v~~sp~~~~~~s~~-~~~~~w~~~~ 312 (335)
.+|.+++|+|++.++++|. +.+.+|..+.
T Consensus 244 ~~v~s~~fs~d~~~la~g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDS 273 (371)
T ss_dssp CCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred ccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence 9999999999999999884 4567776543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.4e-32 Score=231.03 Aligned_cols=249 Identities=22% Similarity=0.381 Sum_probs=207.1
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++.++|++|.+.|.++.|+|++.++++++.++++.+|+............+...+..+.+.++... +++++.|+.+
T Consensus 48 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ 125 (317)
T d1vyhc1 48 TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTI 125 (317)
T ss_dssp TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE--EEEEETTSEE
T ss_pred CCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCce--EEeeccCcce
Confidence 45677889999999999999999999999999999999999888877777777788888888877664 4456679999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEE------------
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAF------------ 156 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~------------ 156 (335)
++||+.+++.+..+.+|...+.+++++|++++|++++.|+.|++||+.++.....+. .......+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 205 (317)
T d1vyhc1 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 205 (317)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred eEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecc
Confidence 999999999999999999999999999999999999999999999999877654332 1111222222
Q ss_pred --------CCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q psy16316 157 --------DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 157 --------~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
...+.++++++.|+.+++||+++.. +... ...+...+.+++++|++++|++++.|+.|++||+.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMT---LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTTTE--EEEE---EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred ccceeeeeccCCceeEeccCCCEEEEEECCCCc--EEEE---EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence 3446688999999999999997632 2222 23345678899999999999999999999999999999
Q ss_pred eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
++..+.+| ...|.+++|+|++++|+||+.||+|+|||
T Consensus 281 ~~~~~~~h---~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 281 CMKTLNAH---EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCEEEECC---SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 88888664 46688999999999999999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-32 Score=237.62 Aligned_cols=288 Identities=18% Similarity=0.239 Sum_probs=208.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++.++|++|+++|++++|+|+ .+|+||+.|++|++|+..............................++.++.|+.+
T Consensus 42 ~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 120 (355)
T d1nexb2 42 NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120 (355)
T ss_dssp TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcE
Confidence 45677899999999999999986 58999999999999999988776655444444333333333455667777789999
Q ss_pred EEEEcCCCceEee-----------------------ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 90 RYLSLHDNKYIRY-----------------------FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 90 ~~~~~~~~~~~~~-----------------------~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
++|++.+...... ...|...+.. +.++++.++++..|+.|++||+++++......
T Consensus 121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 198 (355)
T d1nexb2 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198 (355)
T ss_dssp EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeeecccccceeeee
Confidence 9999976543321 2234444443 34567899999999999999999876654442
Q ss_pred -ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 147 -VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.........++|++.++++++.|+++++||+++.. .. .....+...+.+++++ +++|++++.|+.|++||+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~---~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~ 271 (355)
T d1nexb2 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--LM---YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 271 (355)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC--EE---EEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETT
T ss_pred ccccccccccccccceeeecccccceEEeeeccccc--cc---cccccccccccccccc--cceeeeeeccccccccccc
Confidence 22334556789999999999999999999997632 22 2223445567778776 5689999999999999999
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--c
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--T 303 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~ 303 (335)
++... +..|...... ...++|++++|++|+ |+.|++||+.+++.+.....+|.++|++++|+|+. ++++++ +
T Consensus 272 ~~~~~--~~~~~~~~~~--~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~~~~s~dg 345 (355)
T d1nexb2 272 DYSRK--FSYHHTNLSA--ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG 345 (355)
T ss_dssp TCCEE--EEEECTTCCC--CCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE-EEEEEESSS
T ss_pred cccee--cccccCCceE--EEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe-EEEEEECCC
Confidence 87643 3333332222 246778888877775 88999999999887654446799999999999974 566654 5
Q ss_pred eeEEeccccc
Q psy16316 304 NLAFWIPTYL 313 (335)
Q Consensus 304 ~~~~w~~~~~ 313 (335)
.+.+|.++++
T Consensus 346 ~~~l~~~dfs 355 (355)
T d1nexb2 346 QSFLEILDFS 355 (355)
T ss_dssp CEEEEEEECC
T ss_pred cEEEEEEeCC
Confidence 6788887753
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-31 Score=233.53 Aligned_cols=285 Identities=13% Similarity=0.079 Sum_probs=209.1
Q ss_pred ccEEEEEECCCCCEEEEecCCC-eEEEEEccCCcc--eeeeeccc-ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 22 DKITSIDYSADGLLLISCSEDD-QIVIYDCELGTN--KRTVFSKK-YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg-~i~lwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+.+++++|+|+|..||.++.+. .|+.||...... ...+.+|. ..+..++|+|..+..++++++.|++|++||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 3568899999999999886554 456777654432 34555554 5699999999877778889999999999999754
Q ss_pred ceE--------eeecCCCCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEE-ecCCcceEEECCCCC-EEEE
Q psy16316 98 KYI--------RYFPGHTKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGL-IFGV 165 (335)
Q Consensus 98 ~~~--------~~~~~H~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 165 (335)
+.. ..+..|.++|.+++|+++++.|++++. |+.+++|+..++++...+. +...+..+.|+|++. ++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 432 235678899999999999998887764 7889999999887765543 334456678999876 4678
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc-
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP- 243 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v- 243 (335)
++.|+.+++||++..+ ..........+...+.+++|+|+ +.++++++.|+.|++||+++++++..+.+|......+
T Consensus 178 ~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred eecccccccccccccc--cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence 9999999999986532 11222222344556789999997 6888999999999999999999999887765443322
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCC-CcEEEeee--ceeEEec
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPK-FNMMASAC--TNLAFWI 309 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~-~~~~~s~~--~~~~~w~ 309 (335)
.+++| |++++|++++.|+.|+|||+.++..+..+. ..|...+..++|.+. ..++++++ +.+++|.
T Consensus 256 ~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 256 FALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 22222 789999999999999999999988766553 223334445555433 24667775 6799996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-30 Score=221.06 Aligned_cols=277 Identities=19% Similarity=0.320 Sum_probs=209.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+++..+.+.+|...|+|++| ||++|||||.||+|+|||++++++...+.+|...|..++|. + .++++++.|+.+
T Consensus 4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~--~~l~s~s~D~~i 77 (293)
T d1p22a2 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--E--RVIITGSSDSTV 77 (293)
T ss_dssp CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--S--SEEEEEETTSCE
T ss_pred eEEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--c--ceeecccccccc
Confidence 45666778899999999865 79999999999999999999999999999999999888773 2 357778889999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
++|++..+........+..... .+.+....++++..++.+++||.......... .......+....+....+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 155 (293)
T d1p22a2 78 RVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155 (293)
T ss_dssp EEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred cccccccccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceeccccccccc
Confidence 9999999988777765555443 34455678999999999999999876644322 2222334445555677888999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
.|+.+++||++..+ ....+ ......+.. +++++.++++++.|+.|++||+++.+.+....++. ..+ ..
T Consensus 156 ~d~~i~~~d~~~~~--~~~~~---~~~~~~v~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v--~~ 223 (293)
T d1p22a2 156 GDRTIKVWNTSTCE--FVRTL---NGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELV--RC 223 (293)
T ss_dssp TTSEEEEEETTTCC--EEEEE---ECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS---SCE--EE
T ss_pred CCCceeeecCCCCc--EEEEE---ccccccccc--ccCCCCeEEEecCCCEEEEEecccceeeeeecccc---eee--ee
Confidence 99999999998642 22222 222333444 44557789999999999999999998877765432 222 35
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCC---------CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEK---------GFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~---------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
+++++.+|++|+.||.|++||+.. ......+ .+|.++|++++|+| .+|+|++ +.+++|+
T Consensus 224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~H~~~V~~v~~d~--~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEECS--SCEEECCSSSEEEEEC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe-cCCCCCEEEEEEcC--CEEEEEecCCEEEEeC
Confidence 778889999999999999999642 2234445 46999999999975 5788875 6699995
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-30 Score=223.73 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=199.8
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce----eeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK----RTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
..+..+.+.+|.++|.+++|+|+|.++++|+.|+++++|+....... ..+..+............ . .......
T Consensus 86 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~ 162 (340)
T d1tbga_ 86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N--QIVTSSG 162 (340)
T ss_dssp TTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-T--EEEEEET
T ss_pred cceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccc-c--ccccccc
Confidence 45566789999999999999999999999999999999998765432 223333333333333222 1 2333446
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (335)
|.....+.............+...+....+.+.+..+++|+.|+.|++||++++++...+. +...+..++++|++.+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~ 242 (340)
T d1tbga_ 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242 (340)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEE
Confidence 8888888888888777788889999999999999999999999999999999887766553 344566788999999999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+|+.|+.+++||++... .... .........+..++|+|++++|++++.|+.|++||+.+++++..+.+| ...|.
T Consensus 243 s~s~d~~i~~~~~~~~~--~~~~-~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H---~~~V~ 316 (340)
T d1tbga_ 243 TGSDDATCRLFDLRADQ--ELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH---DNRVS 316 (340)
T ss_dssp EEETTSCEEEEETTTTE--EEEE-ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC---SSCEE
T ss_pred EEeCCCeEEEEeecccc--cccc-cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC---CCCEE
Confidence 99999999999997532 1111 122334456789999999999999999999999999999998888764 45688
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
+++|+|++++|||||.||+|+|||
T Consensus 317 ~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 317 CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3.5e-29 Score=214.86 Aligned_cols=246 Identities=10% Similarity=0.196 Sum_probs=190.7
Q ss_pred CcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcE
Q psy16316 53 GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTV 131 (335)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i 131 (335)
|+..+.+.+|...|.+++|++++. ++++++.|++|++||+++++.++.+. +|...|++++|+|+++ +++++.|+.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEE
T ss_pred CccceEcCCCCCCcEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeE
Confidence 455677889999999999998765 46677889999999999999888874 7999999999999986 5677789999
Q ss_pred EEeecCCCCce----eEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC
Q psy16316 132 RLWDLRSPNCQ----GIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG 207 (335)
Q Consensus 132 ~vWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 207 (335)
++|+....... ...........+.++|++.+++++. ++.+.+|+... ..... ......+++|+|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-----~~~~~----~~~~~~~~~~s~~~ 148 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK-----LTEVP----ISYNSSCVALSNDK 148 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-----EEEEE----CSSCEEEEEECTTS
T ss_pred EEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc-----ccccc----cccccccccccccc
Confidence 99998654321 1122333445678999998877664 56899998642 11111 12234679999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe--CCCCCCC
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL--DADHPSP 285 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~--~~~h~~~ 285 (335)
+++++++.++.|++||+.+++...... ..+...+.+++|+|++++|++++.|+.|++||..++...... ...|..+
T Consensus 149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~ 226 (299)
T d1nr0a2 149 QFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226 (299)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998876543221 224567889999999999999999999999999876544322 2458899
Q ss_pred eEEEEeCCCCcEEEeee--ceeEEeccccc
Q psy16316 286 VQTIQFNPKFNMMASAC--TNLAFWIPTYL 313 (335)
Q Consensus 286 v~~v~~sp~~~~~~s~~--~~~~~w~~~~~ 313 (335)
|++++|+|+++++++|+ +.+++|.+...
T Consensus 227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred cccccccccccceEEEcCCCEEEEEECCCC
Confidence 99999999999999986 57999976443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.6e-28 Score=210.54 Aligned_cols=252 Identities=17% Similarity=0.280 Sum_probs=183.9
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEE-------------------
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLI------------------- 69 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~------------------- 69 (335)
+..++.++|++|.+.|.++.|+|+ +|++|+.|+++++|+................+...
T Consensus 45 ~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 122 (342)
T d2ovrb2 45 VTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122 (342)
T ss_dssp TTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEe
Confidence 346677899999999999999875 99999999999999987654332221111111000
Q ss_pred -------------------EEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCc
Q psy16316 70 -------------------RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT 130 (335)
Q Consensus 70 -------------------~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~ 130 (335)
..... ....+.++.|+.+++||+...+.+..+.+|...+..+.+ ++..+++|+.|++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~ 198 (342)
T d2ovrb2 123 DIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 198 (342)
T ss_dssp ESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred ecccccceeeeecccccceeeccc--cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCe
Confidence 00011 112344557899999999999999999999888777665 5679999999999
Q ss_pred EEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEE
Q psy16316 131 VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210 (335)
Q Consensus 131 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 210 (335)
|++||++.+++...... +...+..+.++++++++++.|++|++||+.... ....+.....+...+. +++++++++
T Consensus 199 i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~ 273 (342)
T d2ovrb2 199 IRVWDVETGNCIHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVT--CLQFNKNFV 273 (342)
T ss_dssp EEEEETTTCCEEEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEE--EEEECSSEE
T ss_pred EEEeecccceeeeEecc-cccceeEEecCCCEEEEEcCCCEEEEEeccccc--ccccccccceeeecee--ecccCCCee
Confidence 99999998877654432 222344566677899999999999999997632 2222222223333344 445566799
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeccc--ccCCCCceEEEEcCCCcEEEEEeCCCc----EEEEECCC
Q psy16316 211 LISTNGSIIRTFDAYNGQCLQTLAGF--LNNKGCPLEASFTPDSKYVISGSTDGR----IHIWNAEK 271 (335)
Q Consensus 211 ~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~tgs~dg~----v~iwd~~~ 271 (335)
++++.|+.|++||++++++++++... ..+...|.+++|+|++.+||+|+.||+ |++||+..
T Consensus 274 ~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 99999999999999999998877532 234556889999999999999999985 99999863
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=1e-27 Score=210.09 Aligned_cols=270 Identities=12% Similarity=0.056 Sum_probs=195.8
Q ss_pred EEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 26 SIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 26 ~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
.-.||| ||+++|+++. |.|++||.+.+...+. .|...+..++|+|++...+.++...+..+++||+++++.. .+.
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 467999 9999999874 7999999988765542 5788899999999887666555544468999999887654 567
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEEE----------cCCeEE
Q psy16316 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVGV----------NSDTIK 173 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~d~~v~ 173 (335)
+|...|.+++|+|++++|++++.|+.+++||+.++++...... ......++|+|+|++++.+. .++.++
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 8999999999999999999999999999999998887665543 33456689999999998654 344689
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee-------eeeccccc--------
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-------QTLAGFLN-------- 238 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~-------~~~~~~~~-------- 238 (335)
+||+.... .............++|+|+|+.|+.++.++.+++|+....... ..+..+..
T Consensus 163 v~d~~~~~------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 236 (360)
T d1k32a3 163 VYDMEGRK------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236 (360)
T ss_dssp EEETTTTE------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred eeccccCc------eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceEC
Confidence 99987521 1122233445577899999999999999999999986543211 11100000
Q ss_pred -------------------------CCCCceEEEEcCC-------------CcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 239 -------------------------NKGCPLEASFTPD-------------SKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 239 -------------------------~~~~v~~~~~sp~-------------~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
.......+...++ +.++++++.++.|++||+.+++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---- 312 (360)
T d1k32a3 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---- 312 (360)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----
T ss_pred CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE----
Confidence 0001112222222 2345677788999999998765432
Q ss_pred CCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 281 DHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 281 ~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
|.+.|.+++|||||++|++++ +.+++|..
T Consensus 313 -~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 313 -VKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp -EEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred -ecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 345689999999999999886 56777754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.4e-25 Score=200.31 Aligned_cols=246 Identities=13% Similarity=0.120 Sum_probs=171.4
Q ss_pred ecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce------EeeecCCCCCeEEEEE------CC-CCCEEEEee
Q psy16316 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY------IRYFPGHTKKVNSLCL------SP-IDDTFISGS 126 (335)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~H~~~V~~~~~------~~-~~~~l~s~s 126 (335)
.+|...|..+++.+ . .+++++.|++|++||..+... ......|...+..+.. .+ ++..+++++
T Consensus 11 ~~H~~~I~~v~~~~--~--~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 11 KAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp SCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CcccCccEEEEEeC--C--EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 46777888887653 2 456777899999999765431 2223345554433322 11 234788999
Q ss_pred CCCcEEEeecCCCCceeEE---Ee--------cCCcceEEECCC-----CCEEEEEEcCCeEEEEEccCCCC--------
Q psy16316 127 YDKTVRLWDLRSPNCQGIM---HV--------SGSRPIAAFDPE-----GLIFGVGVNSDTIKLYDVRSFDK-------- 182 (335)
Q Consensus 127 ~D~~i~vWd~~~~~~~~~~---~~--------~~~~~~~~~~~~-----~~~~~~~~~d~~v~iwd~~~~~~-------- 182 (335)
.||.|++|++......... .. ......+.+.++ +.++++++.|+++++|++.....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 9999999998654432211 10 111122334333 56788999999999999854211
Q ss_pred -CceeeE----EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc---cccCCCCceEEEEcCCCcE
Q psy16316 183 -GPFSNF----KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG---FLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 183 -~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~ 254 (335)
...... .........+.+++|+|++ +|++++.|+.|++||+.+++++..+.. ...|...|.+++|+||+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 245 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence 111111 1112223346789999998 889999999999999999988766643 2346778999999999999
Q ss_pred EEEEeCCCc---EEEEECCCCeeEEEeC------------CCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 255 VISGSTDGR---IHIWNAEKGFKVCVLD------------ADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 255 l~tgs~dg~---v~iwd~~~~~~~~~~~------------~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
|++|+.|+. |++||+.++.....+. .+|.++|++|+|+|++++|+|++ ++|++|+.
T Consensus 246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 999999974 8999999887766653 36999999999999999999997 57999975
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=9.4e-27 Score=203.89 Aligned_cols=251 Identities=11% Similarity=0.053 Sum_probs=184.3
Q ss_pred cCCccEEEEEECCCCCEEEEecCC--CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSED--DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~D--g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
+|.+.|++++|+|||++|++++.| ..|++||.++++.. .+..+...+..++|++++.. +++++.++.+++|++.+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~--l~~~~~~~~~~~~~~~~ 116 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKF--AVVANDRFEIMTVDLET 116 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSE--EEEEETTSEEEEEETTT
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccc--cceeccccccccccccc
Confidence 799999999999999999877655 37999999887654 45667888999999988764 44555789999999999
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEe----------eCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEE
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISG----------SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~----------s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (335)
++....+..|...+.+++|+|++++|+.+ ..++.+++||+.+++...............++|+|+.++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 99999999999999999999999998854 45667999999887655444444445567899999999999
Q ss_pred EcCCeEEEEEccCCCC-----CceeeEEeccC---------------------------------CCccceEEEEccCCC
Q psy16316 167 VNSDTIKLYDVRSFDK-----GPFSNFKFAAE---------------------------------KECDWTGIKFSADGK 208 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~-----~~~~~~~~~~~---------------------------------~~~~~~~~~~s~~~~ 208 (335)
+.++.+++||...... ........... .......+...+++.
T Consensus 197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (360)
T d1k32a3 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276 (360)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc
Confidence 9999999998643210 00000000000 000112233333332
Q ss_pred E-------------EEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 209 Y-------------ILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 209 ~-------------l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
. ++.++.++.+++||+.+++.. .+. ..+..++|||||++|++++.||+|++||+.++...
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE------EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-Eec------CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 2 234445778999999887643 222 23567999999999999999999999999988776
Q ss_pred EEeC
Q psy16316 276 CVLD 279 (335)
Q Consensus 276 ~~~~ 279 (335)
..+.
T Consensus 350 ~~~~ 353 (360)
T d1k32a3 350 RTVE 353 (360)
T ss_dssp EECC
T ss_pred eEEE
Confidence 6654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.3e-25 Score=191.29 Aligned_cols=244 Identities=15% Similarity=0.146 Sum_probs=177.0
Q ss_pred cHHHHhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 4 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.|.+++.+++....++|+..|.++.|++++ .+++++.|+++++|+....+. ...+..+.+.+++. .++.
T Consensus 29 ~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~-------~~~~~~~~~~~~~~--~~~~- 97 (287)
T d1pgua2 29 YDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF-------GSQPKVASANNDGF--TAVL- 97 (287)
T ss_dssp TTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC-------SSCEEEEEECSSSE--EEEE-
T ss_pred CCCeEEEEECCCCCCCCCCCEEEEEecCCC-eEEEEeecccccccccccccc-------ccceeeeeeccCCc--eEEE-
Confidence 466777788888889999999999999765 579999999999999764321 12234445544432 2222
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-CcEEEeecCCCCceeEE--EecCCcceEEECCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD-KTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~ 160 (335)
..++.+.+|+..+++.+..++.+ ..+ .+++++++.++.++.| +.+++|++......... ........++|+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 174 (287)
T d1pgua2 98 TNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174 (287)
T ss_dssp ETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred eecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc
Confidence 24677889999998888887644 333 3456667777777766 57999998754433222 123445678999999
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC----------CCEEEEEeCCCeEEEEECCC-Cee
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD----------GKYILISTNGSIIRTFDAYN-GQC 229 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~~~l~~~~~~~~i~i~d~~~-~~~ 229 (335)
.++++|+.|+.|++||+.... ........+...+.+++|+|. +.++++++.|+.|++||+++ .+.
T Consensus 175 ~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~ 250 (287)
T d1pgua2 175 TYIAAGDVMGKILLYDLQSRE----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250 (287)
T ss_dssp SEEEEEETTSCEEEEETTTTE----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred cccccccccccccceeecccc----cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence 999999999999999997532 111122344556788888865 46899999999999999977 444
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+..+.+ |...+.+++|+|++ .|+|+|.|+.|++|++
T Consensus 251 ~~~~~~---h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 251 IKALNA---HKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEETTS---STTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEEeCC---CCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 454444 55678899999986 5889999999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.9e-25 Score=190.80 Aligned_cols=251 Identities=11% Similarity=0.047 Sum_probs=178.9
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE---eeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEe
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI---RYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLW 134 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vW 134 (335)
...|+..|..++|+|++. ++++++.|++|++||+..+... ....+|..+|.+++|+|++ .+|++|+.|++|++|
T Consensus 7 ~~~h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SSCCSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred CCCCCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 356788899999998765 4566778999999999765432 3334799999999999864 589999999999999
Q ss_pred ecCCCCceeEEEec--CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc-CCCccceEEEEccCCCEEE
Q psy16316 135 DLRSPNCQGIMHVS--GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA-EKECDWTGIKFSADGKYIL 211 (335)
Q Consensus 135 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~ 211 (335)
|+............ .........++...+++++.++++++||++.............. ........+.+.+.+..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 99877655433221 22234456677889999999999999999764332222111111 1122234567888999999
Q ss_pred EEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE-cCCCcEEEEEeCCCcEEEEECCCCe---------eEEE----
Q psy16316 212 ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF-TPDSKYVISGSTDGRIHIWNAEKGF---------KVCV---- 277 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~tgs~dg~v~iwd~~~~~---------~~~~---- 277 (335)
+++.++.|++|++...+...................+ ++++..+++++.||.+.+|+..... ....
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence 9999999999999877654444333333333444444 4467899999999999999875321 1110
Q ss_pred -eCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 278 -LDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 278 -~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
....|..+|++++|+|++++||+|+ +.+++|...
T Consensus 245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred cCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence 1234677899999999999999997 569999764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-23 Score=177.23 Aligned_cols=233 Identities=20% Similarity=0.282 Sum_probs=172.6
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 141 (335)
+..+|.++++ ++ ..+++++.|++|++||+.++++++++++|.+.|++++| ++++|+||+.|++|++||+..+..
T Consensus 14 ~~~~V~c~~~--d~--~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~ 87 (293)
T d1p22a2 14 TSKGVYCLQY--DD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 87 (293)
T ss_dssp SCCCEEEEEC--CS--SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCEEEEEE--cC--CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc
Confidence 4455666554 33 35778889999999999999999999999999999987 467999999999999999998776
Q ss_pred eeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEE
Q psy16316 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRT 221 (335)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i 221 (335)
........ .......+....++++..++.+.+||....... ........+...+..+. +....+++++.|+.+++
T Consensus 88 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~--~~~~~~~~~s~d~~i~~ 162 (293)
T d1p22a2 88 LNTLIHHC-EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVD--FDDKYIVSASGDRTIKV 162 (293)
T ss_dssp EEEECCCC-SCEEEEECCTTEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEE--EETTEEEEEETTSEEEE
T ss_pred cccccccc-cccccccccccceeecccccceeEeeccccccc--cccccccccccccccce--ecccccccccCCCceee
Confidence 55443332 233345556677888999999999998864322 12222233334444444 45567888999999999
Q ss_pred EECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
||+.+++.+..+.++ ...+..+. +++.++++++.||.|++||..+........ .|...+.. +++++.+++++
T Consensus 163 ~d~~~~~~~~~~~~~---~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~sg 234 (293)
T d1p22a2 163 WNTSTCEFVRTLNGH---KRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRC--IRFDNKRIVSG 234 (293)
T ss_dssp EETTTCCEEEEEECC---SSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE--EECCSSEEEEE
T ss_pred ecCCCCcEEEEEccc---cccccccc--CCCCeEEEecCCCEEEEEecccceeeeeec-ccceeeee--ccccceEEEEE
Confidence 999999988877653 23344444 456799999999999999999888777664 57777765 45667788888
Q ss_pred e--ceeEEeccccc
Q psy16316 302 C--TNLAFWIPTYL 313 (335)
Q Consensus 302 ~--~~~~~w~~~~~ 313 (335)
+ +.+++|.....
T Consensus 235 ~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 235 AYDGKIKVWDLVAA 248 (293)
T ss_dssp ETTSCEEEEEHHHH
T ss_pred cCCCEEEEEECCCC
Confidence 6 56999976443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=1.7e-21 Score=165.81 Aligned_cols=257 Identities=16% Similarity=0.148 Sum_probs=192.8
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEE-EEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
+..++.+.+... +.+..++|+|||++| ++++.++.|++||+++++....+..+. .+..+.+.+++...+ +++..+.
T Consensus 20 ~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 96 (301)
T d1l0qa2 20 TSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY-VTNMASS 96 (301)
T ss_dssp TTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE-EEETTTT
T ss_pred CCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccccc-ccccccc
Confidence 345666667654 447899999999976 677889999999999998887765543 456778887765544 4555688
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (335)
.+.+|+..+++....+..+ ....++.++|+++.+ +++..|+.+.+||..+...............+.++|++..+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (301)
T d1l0qa2 97 TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVA 175 (301)
T ss_dssp EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred eeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeee
Confidence 9999999999988888754 566789999999866 56667899999999988777666555555667899998887777
Q ss_pred EcC-CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---CCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 167 VNS-DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---GSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 167 ~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
..+ +.+.+|+..... ..... ........+++++++..++++.. ++.|++||+.+++....+.. ...
T Consensus 176 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~----~~~ 245 (301)
T d1l0qa2 176 NFDSMSISVIDTVTNS--VIDTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV----GPD 245 (301)
T ss_dssp ETTTTEEEEEETTTTE--EEEEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC----CSS
T ss_pred ccccccccccccccee--eeecc----cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC----CCC
Confidence 655 566677665321 11111 11223467899999998876643 36799999999988777643 234
Q ss_pred ceEEEEcCCCcEE-EEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 243 PLEASFTPDSKYV-ISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 243 v~~~~~sp~~~~l-~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
+..++|+|||++| ++++.|++|++||+.+++.+..++
T Consensus 246 ~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 6789999999976 688889999999999998777764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=1.2e-22 Score=182.96 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=190.1
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-----cccccceEEEEecCCCeeEEeec
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-----SKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
+.+++.+.+..|. .+..++|||||++|++++.|+++++||+++++...... .+...+..+.|++++... ++++
T Consensus 50 ~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l-~v~~ 127 (426)
T d1hzua2 50 DSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT-IAGA 127 (426)
T ss_dssp TTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEE-EEEE
T ss_pred CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEE-EEee
Confidence 4677888898885 59999999999999999999999999999987543321 222233445556666543 3455
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecC-----------CCCceeE--EEecC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLR-----------SPNCQGI--MHVSG 149 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~-----------~~~~~~~--~~~~~ 149 (335)
..++.+++||..++.+...+.+|...+....+.+++. ..+..+.|+...+|... ....... .....
T Consensus 128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence 5789999999999999988888776666666655543 33444555555444433 2222111 12222
Q ss_pred CcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE-E-E-EEeCCCeEEEEECC
Q psy16316 150 SRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY-I-L-ISTNGSIIRTFDAY 225 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l-~-~~~~~~~i~i~d~~ 225 (335)
....+.++|+++++.++. .+..+.+++..+... ..... ............+.+++.. + + ....++.+.+|+..
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~ 284 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVD-VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 284 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEE--EEEEE-CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred ccEeeeECCCCcEEEeeeecccceeeeecccccE--EEEec-cCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence 233568999998877665 556788888875321 11111 1111111223334333332 2 2 23356778888764
Q ss_pred C-------CeeeeeecccccCCCCceEEEEcCCCcEEE-------EEeCCCcEEEEECCCCeeEEEe--------CCCCC
Q psy16316 226 N-------GQCLQTLAGFLNNKGCPLEASFTPDSKYVI-------SGSTDGRIHIWNAEKGFKVCVL--------DADHP 283 (335)
Q Consensus 226 ~-------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-------tgs~dg~v~iwd~~~~~~~~~~--------~~~h~ 283 (335)
. ++....+.+ +...+..++|+||+++|+ +++.|++|++||+.++.....+ ...|.
T Consensus 285 ~~~~~~~~~~~~~~l~g---~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~ 361 (426)
T d1hzua2 285 PKNHPQYAWKKVAELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 361 (426)
T ss_dssp TTTCTTTBTSEEEEEEC---SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred ccccccccceEeEEEec---CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCC
Confidence 3 355566655 344567799999999999 4667899999999887654332 12466
Q ss_pred CCeEEEEeCCCCcEE-Eee------eceeEEeccc
Q psy16316 284 SPVQTIQFNPKFNMM-ASA------CTNLAFWIPT 311 (335)
Q Consensus 284 ~~v~~v~~sp~~~~~-~s~------~~~~~~w~~~ 311 (335)
..|..++|||+|+++ +|+ ++.|.+|...
T Consensus 362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence 789999999999865 342 2458999653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=1.2e-20 Score=160.53 Aligned_cols=260 Identities=13% Similarity=0.149 Sum_probs=194.7
Q ss_pred EEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEE
Q psy16316 36 LISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115 (335)
Q Consensus 36 lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~ 115 (335)
.++++.|++|.+||+++++..+.+... ..+..++|++++...+ +++..++.|++||+.+++.+..++.|.. +..+.+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~-v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVY-VANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE-EEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEE-EEECCCCEEEEEECCCCceeeeeecccc-cccccc
Confidence 467889999999999999888776543 3467789998876554 4455689999999999999999987764 688999
Q ss_pred CCCCCE-EEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEEeccC
Q psy16316 116 SPIDDT-FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 116 ~~~~~~-l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
++++.. ++++..++.+++||..+++....+..........++|++..++ ++..++.+.+|+..... ......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---- 155 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVS---- 155 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE----
T ss_pred ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc--eeeecc----
Confidence 999875 5566778899999999887777666655566788999998765 45567889999987532 111111
Q ss_pred CCccceEEEEccCCCEEEEEeCC-CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC---CCcEEEEEC
Q psy16316 194 KECDWTGIKFSADGKYILISTNG-SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST---DGRIHIWNA 269 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~---dg~v~iwd~ 269 (335)
.......++++|++..++++..+ ..+.+|+....+....+.. ...+..++|+|+++.++.++. ++.|++||.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred cCCCceEEEeeccccceeeecccccccccccccceeeeecccc----cCCcceeeccccccccccccccceeeeeeeeec
Confidence 12234678999999998887765 5677888877766655433 233567899999998766543 467999999
Q ss_pred CCCeeEEEeCCCCCCCeEEEEeCCCCcEE-Eeee--ceeEEecc
Q psy16316 270 EKGFKVCVLDADHPSPVQTIQFNPKFNMM-ASAC--TNLAFWIP 310 (335)
Q Consensus 270 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~-~s~~--~~~~~w~~ 310 (335)
.++.....++. ...+..++|+|+|+++ +++. +.|++|.+
T Consensus 232 ~t~~~~~~~~~--~~~~~~va~spdg~~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 232 GTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273 (301)
T ss_dssp TTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEEcC--CCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 99987776653 3567999999999865 5553 56888864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=9.3e-23 Score=184.14 Aligned_cols=284 Identities=9% Similarity=-0.020 Sum_probs=184.3
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee--ee---cccccceEEEEecCCCeeEEeec
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT--VF---SKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
+.+++.+.+..|. .+..++|||||++|++++.|+++++||+.+++.... +. .+...+....|++++.. +++++
T Consensus 50 ~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~ 127 (432)
T d1qksa2 50 STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGA 127 (432)
T ss_dssp TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEE
T ss_pred CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEc
Confidence 5678888898884 699999999999999999999999999988764332 22 12222233344555543 34566
Q ss_pred CCCCeEEEEEcCCCceEeeecCCC-----------CCeEEEEECCCCCE-EEEeeCCCcEEEeecCCCCceeEE--EecC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHT-----------KKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGIM--HVSG 149 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~-----------~~V~~~~~~~~~~~-l~s~s~D~~i~vWd~~~~~~~~~~--~~~~ 149 (335)
..++++++||..++++++.+.+|. .....+.++|++.. +++.+.++.|.+||..+.+...+. ....
T Consensus 128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~ 207 (432)
T d1qksa2 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 207 (432)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC
Confidence 679999999999999988776543 44567888998875 567778899999999887655433 3334
Q ss_pred CcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEec--cCCCc------------------------------
Q psy16316 150 SRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFA--AEKEC------------------------------ 196 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~------------------------------ 196 (335)
....+.++|+|+++++++ .++.+.++|...... ....... ..+..
T Consensus 208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~ 285 (432)
T d1qksa2 208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 285 (432)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ccccceECCCCCEEEEeccccceEEEeecccceE--EEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence 445678999999776665 456888888764211 0000000 00000
Q ss_pred ---------cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEE
Q psy16316 197 ---------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267 (335)
Q Consensus 197 ---------~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iw 267 (335)
.+....++|++..+++++.+...++|+..+..... .....+++ ||++.|++++.|+.+++|
T Consensus 286 ~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~---------~~~~sv~v-pDg~~la~~s~d~~~k~w 355 (432)
T d1qksa2 286 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA---------EISGSVAV-FDIKAMTGDGSDPEFKTL 355 (432)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH---------HHHTCEEE-EEGGGCCCSSSCCCEEEE
T ss_pred cccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC---------CeeeEEEE-EechhhcccccCCceEec
Confidence 11223344444444444444444444332221100 00112444 899999999999999999
Q ss_pred ECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-------ceeEEecc
Q psy16316 268 NAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-------TNLAFWIP 310 (335)
Q Consensus 268 d~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-------~~~~~w~~ 310 (335)
+..++.+ + ..|...|..++|||+|++++.+. +.|.+|..
T Consensus 356 ~~~~~~~---l-~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~ 401 (432)
T d1qksa2 356 PIAEWAG---I-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 401 (432)
T ss_dssp CHHHHHT---C-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ccccccc---c-CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence 9765432 2 24677899999999998765442 45888865
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=4.1e-20 Score=159.45 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=176.1
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeeccc--ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCC----
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKK--YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT---- 107 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~---- 107 (335)
.||++++.|++|+|||+++++....+..+. ..+..+++++++...++ ++..++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v-~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYA-TVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEE-EETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEE-EECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence 489999999999999999999888776543 44678999998765443 45568999999999999988876554
Q ss_pred -CCeEEEEECCCCCEEEEee------------CCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 108 -KKVNSLCLSPIDDTFISGS------------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 108 -~~V~~~~~~~~~~~l~s~s------------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
..+..++++|+++.++.++ .+..+.+||..++.....+........++++|+|.++++++. .+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 3456889999999888776 467888999998877766665555667899999999888754 4667
Q ss_pred EEccCCCCC-------------------c----------eeeEE--------------------------------eccC
Q psy16316 175 YDVRSFDKG-------------------P----------FSNFK--------------------------------FAAE 193 (335)
Q Consensus 175 wd~~~~~~~-------------------~----------~~~~~--------------------------------~~~~ 193 (335)
||....... . ..... ....
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 876532100 0 00000 0000
Q ss_pred CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
.......++++|++.+++.+ ++.+++||+.+++.+..+.. ...+.+++|+|||++|++++.|++|++||..+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 11112346677888877665 47899999999998887642 3456789999999999999999999999999988
Q ss_pred eEEEeC
Q psy16316 274 KVCVLD 279 (335)
Q Consensus 274 ~~~~~~ 279 (335)
++..+.
T Consensus 313 ~v~~i~ 318 (337)
T d1pbyb_ 313 KKGQVD 318 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777664
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2.8e-20 Score=161.07 Aligned_cols=270 Identities=11% Similarity=0.033 Sum_probs=187.6
Q ss_pred EEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC
Q psy16316 27 IDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG 105 (335)
Q Consensus 27 v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 105 (335)
++|+++|++|++++.|++|.+||+++++..+++.. +...+..++|++++...+ +++..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~-v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY-VLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE-EEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEE-EEECCCCcEEEEeCccCeeeeeecc
Confidence 46899999999999999999999999998887753 456678999999876544 4555689999999999988876653
Q ss_pred C------CCCeEEEEECCCCCEEEEee------------CCCcEEEeecCCCCceeE---EEecCCcceEEECCCCCEEE
Q psy16316 106 H------TKKVNSLCLSPIDDTFISGS------------YDKTVRLWDLRSPNCQGI---MHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 106 H------~~~V~~~~~~~~~~~l~s~s------------~D~~i~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 164 (335)
. ...+..++++|+|++++.++ .+..+.+||..+++.... ...........+++++.+++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 2 23467899999999887665 478889999877654332 22233345566778887766
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC--------------------------EEEEEeCCCe
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK--------------------------YILISTNGSI 218 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--------------------------~l~~~~~~~~ 218 (335)
.+ ..+.+|++.+.. ....+.... ....+.++|++. .++.+..+..
T Consensus 161 ~~---~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (346)
T d1jmxb_ 161 AG---PDIYKMDVKTGK--YTVALPLRN----WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231 (346)
T ss_dssp ES---SSEEEECTTTCC--EEEEECSTT----CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred eC---CcceEEEccCCC--EEEEEecCC----CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence 43 568888876532 111111100 011122333332 2233334456
Q ss_pred EEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
+.+|+..++........ .+...+..+.++|++.+++.++. +.|++||..++.....+.. ...+.+++|+|+|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG~~l 306 (346)
T d1jmxb_ 232 YLSVDLKTGKTHTQEFA--DLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKL 306 (346)
T ss_dssp EEEEETTTCCEEEEEEE--ECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCE
T ss_pred EEEEECCCCceEEEEee--cccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC--CCCEEEEEEcCCCCEE
Confidence 88888888765443322 23445677899999888887765 5799999999988777654 3468899999999998
Q ss_pred Eeee--ceeEEeccc
Q psy16316 299 ASAC--TNLAFWIPT 311 (335)
Q Consensus 299 ~s~~--~~~~~w~~~ 311 (335)
++++ ++|++|.+.
T Consensus 307 ~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 307 YLGGTFNDLAVFNPD 321 (346)
T ss_dssp EEESBSSEEEEEETT
T ss_pred EEEeCCCcEEEEECc
Confidence 8875 678999763
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=5.5e-19 Score=158.79 Aligned_cols=273 Identities=13% Similarity=0.089 Sum_probs=184.4
Q ss_pred ECCCCC--EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe-----
Q psy16316 29 YSADGL--LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR----- 101 (335)
Q Consensus 29 ~s~~g~--~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~----- 101 (335)
++.|.+ ++++++.||+|+|||+.+++.+..+..+ ..+..++|+|++...+ +++.|+++++||+.+++...
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~--~~~~d~~v~vwd~~t~~~~~~~~i~ 102 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLL--VIGRDARIDMIDLWAKEPTKVAEIK 102 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEE--EEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEE--EEeCCCCEEEEEccCCceeEEEEEe
Confidence 555543 6788999999999999999999888765 4588899999887543 44568999999999887443
Q ss_pred eecCCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEe------------cCCcceEEECCCCCEEEEEEc
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHV------------SGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 168 (335)
...+|...+.+++|+|+|++| +++..|+++++||..++.+...... .+....+..++++..+.....
T Consensus 103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~ 182 (426)
T d1hzua2 103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182 (426)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence 234677888899999999976 5556899999999998876654421 111223455666655554433
Q ss_pred -CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 169 -SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 169 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.+.+.+++........... .........++|+|++++++++.. +..+.+++..+++.......... .......
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 257 (426)
T d1hzua2 183 ETGKVLLVNYKDIDNLTVTS----IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGRGA 257 (426)
T ss_dssp TTTEEEEEECSSSSSCEEEE----EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC-CCCSCCE
T ss_pred CCCeEEEEEeccccceeeEE----eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc-cccccee
Confidence 3455555544322111111 112234567999999999888765 46799999999988766643211 1112223
Q ss_pred EEcCCCc---EEEEEeCCCcEEEEECCC-------CeeEEEeCCCCCCCeEEEEeCCCCcEEEe-------e--eceeEE
Q psy16316 247 SFTPDSK---YVISGSTDGRIHIWNAEK-------GFKVCVLDADHPSPVQTIQFNPKFNMMAS-------A--CTNLAF 307 (335)
Q Consensus 247 ~~sp~~~---~l~tgs~dg~v~iwd~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s-------~--~~~~~~ 307 (335)
.+.+.+. ..++.+.|+.+.+|+... +.....++ +|...+..++|||++.+++. + +.++++
T Consensus 258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v 336 (426)
T d1hzua2 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 336 (426)
T ss_dssp EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE
T ss_pred eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe-cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEE
Confidence 3333322 233445678888887653 24455554 58899999999999999994 2 357999
Q ss_pred ecc
Q psy16316 308 WIP 310 (335)
Q Consensus 308 w~~ 310 (335)
|..
T Consensus 337 wd~ 339 (426)
T d1hzua2 337 FDL 339 (426)
T ss_dssp EET
T ss_pred EEC
Confidence 975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.1e-18 Score=157.05 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=178.4
Q ss_pred CCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce-----Eeeec
Q psy16316 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-----IRYFP 104 (335)
Q Consensus 30 s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-----~~~~~ 104 (335)
+++.-++++.+.||+|+|||.++++.+..+..+ ..+..++|+|++...+. ++.|+++++||+.+++. +....
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~--~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFV--IGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEE--EETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEE--EcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 334445799999999999999999999988765 46889999998876554 44689999999987653 23344
Q ss_pred CCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEe------------cCCcceEEECCCCCEEE-EEEcCC
Q psy16316 105 GHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHV------------SGSRPIAAFDPEGLIFG-VGVNSD 170 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~d~ 170 (335)
+|.+.+.+..|+|||++| ++++.|++|++||..++++...... ......+.++|++..++ +...++
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence 677888888999999975 7888999999999999887655421 12222457888887654 455678
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccc--cCCCCceEEE
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFL--NNKGCPLEAS 247 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~ 247 (335)
.+.+||...........+. .......++|+|+|+++++++. +..+.++|..+++....+.... .+........
T Consensus 186 ~i~~~d~~~~~~~~~~~i~----~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 261 (432)
T d1qksa2 186 KILLVDYTDLNNLKTTEIS----AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261 (432)
T ss_dssp EEEEEETTCSSEEEEEEEE----CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE
T ss_pred eEEEEEccCCCcceEEEEc----ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccccee
Confidence 9999998653321111111 1123467999999998887765 4679999999888766553221 1222233344
Q ss_pred EcCCCcEEEEEe-CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 248 FTPDSKYVISGS-TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 248 ~sp~~~~l~tgs-~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
+.+.+...++.. .|+.|.+|+..... . ..|...|....++|++..+++++ ...++|.
T Consensus 262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~----~-~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~ 321 (432)
T d1qksa2 262 HPTFGPVWATSHMGDDSVALIGTDPEG----H-PDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 321 (432)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTT----C-TTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred cCCCCceecccccCCceEEeccccccc----c-cccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence 444555555554 37778888765431 1 22444555555555554443332 3344553
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=4e-18 Score=146.75 Aligned_cols=223 Identities=12% Similarity=0.086 Sum_probs=159.8
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCC--CCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecC------
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGH--TKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSG------ 149 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H--~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~------ 149 (335)
++++++.|++|.+||+.+++.+..++.+ ...+.+++|+|+|+++ ++++.|+.|.+||+.+++.........
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 3455667999999999999999888643 4567899999999876 677889999999999988776554321
Q ss_pred CcceEEECCCCCEEEEEEc------------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC
Q psy16316 150 SRPIAAFDPEGLIFGVGVN------------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS 217 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~ 217 (335)
....++++|+++.++++.. +..+.+||..... ....+. ....+.+++|+|+++++++++.
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~----~~~~~~~~~~s~dg~~l~~~~~-- 154 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFE----APRQITMLAWARDGSKLYGLGR-- 154 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEE----CCSSCCCEEECTTSSCEEEESS--
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe--EEEecc----ccCCceEEEEcCCCCEEEEEcC--
Confidence 1235789999998877753 5678888876532 111111 1223467899999999998764
Q ss_pred eEEEEECCCCeeeeeeccc-------------------------------------------------------------
Q psy16316 218 IIRTFDAYNGQCLQTLAGF------------------------------------------------------------- 236 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~------------------------------------------------------------- 236 (335)
.+.+||..+++....+...
T Consensus 155 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
T d1pbyb_ 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence 4677888776544333110
Q ss_pred --ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 237 --LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 237 --~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
..+...+..++++|++.+++.+ ++.|++||..++.....+. +...+.+++|+|+|+++++++ +++++|.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 0111223345677888887766 4789999999998887765 456789999999999888775 5689997644
Q ss_pred c
Q psy16316 313 L 313 (335)
Q Consensus 313 ~ 313 (335)
.
T Consensus 311 ~ 311 (337)
T d1pbyb_ 311 L 311 (337)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=8.2e-19 Score=151.69 Aligned_cols=259 Identities=9% Similarity=-0.019 Sum_probs=174.4
Q ss_pred hcccceeeec-cCCccEEEEEECCCCCEE-EEecCCCeEEEEEccCCcceeeeeccc------ccceEEEEecCCCeeEE
Q psy16316 9 RSYKVAKLFR-ENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCELGTNKRTVFSKK------YGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 9 ~~~~~~~~~~-~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 80 (335)
+..++.++++ .|...+.++.|+|||+++ ++++.++.|++||+++++....+.... ..+..+++++++...+.
T Consensus 26 ~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v 105 (346)
T d1jmxb_ 26 ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 105 (346)
T ss_dssp TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred CCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEE
Confidence 4456667776 467778999999999976 677789999999999998776554322 23556888888776554
Q ss_pred eec----------CCCCeEEEEEcCCCceEeeecCCC--CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec
Q psy16316 81 AST----------KIDDTVRYLSLHDNKYIRYFPGHT--KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS 148 (335)
Q Consensus 81 ~~~----------~~d~~i~~~~~~~~~~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 148 (335)
+.. ..+..+.+|+..+++....+..|. ..+..+.+++++..++++ ..+.+||+.+++....+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 182 (346)
T d1jmxb_ 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLR 182 (346)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECST
T ss_pred EecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecC
Confidence 431 247788999998887665554332 456667777777666553 45889999887766554332
Q ss_pred CCcceEEECCCCCE--------------------------EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEE
Q psy16316 149 GSRPIAAFDPEGLI--------------------------FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK 202 (335)
Q Consensus 149 ~~~~~~~~~~~~~~--------------------------~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (335)
.......++|++.. +.++..+..+.+||..... ... .........+..+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 258 (346)
T d1jmxb_ 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK---THT-QEFADLTELYFTGL 258 (346)
T ss_dssp TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC---EEE-EEEEECSSCEEEEE
T ss_pred CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc---eEE-EEeecccceeEEEE
Confidence 22112223333221 2222334456777765422 111 11112233445678
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 203 ~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
+++++.+++.... +.|.+||..+++.++.+.. ...+.+++|+|||++|++++.|+.|++||..+++.+..++
T Consensus 259 ~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 259 RSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp ECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 8888888776654 5799999999988776642 2347789999999999999999999999999998876664
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=2.7e-17 Score=144.27 Aligned_cols=273 Identities=11% Similarity=-0.020 Sum_probs=181.3
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeeccccc-------ceEEEE
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSKKYG-------VDLIRF 71 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~~~~-------~~~~~~ 71 (335)
...++...+..+..+ .+.|+|||++|++++ .++.|++||..+++....+..+... ...+.|
T Consensus 55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (373)
T d2madh_ 55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence 345666677766654 799999999998875 4688999999999887766554332 234667
Q ss_pred ecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEec--
Q psy16316 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVS-- 148 (335)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~-- 148 (335)
+++.....+.....++.+.+|+....+... |.....++.++|+++ .+++.+.|+++.+||...+.........
T Consensus 133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~ 208 (373)
T d2madh_ 133 TPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred EeCCCcEEEEEEcCCCceEEeeccCCeEEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc
Confidence 777766666555557788888887766544 334566888999986 4578899999999999877655433211
Q ss_pred --CC---cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec-------cCCCccceEEEEccCCCEEE-----
Q psy16316 149 --GS---RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-------AEKECDWTGIKFSADGKYIL----- 211 (335)
Q Consensus 149 --~~---~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~----- 211 (335)
+. .....+.+++.+ +..+.++.+.+|+............... .........++++|++..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 287 (373)
T d2madh_ 209 TAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred ccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence 11 112344555544 4455778888888765321111110000 00011223456666666544
Q ss_pred -----EEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc--EEEEEeCCCcEEEEECCCCeeEEEeCCCCCC
Q psy16316 212 -----ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK--YVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284 (335)
Q Consensus 212 -----~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~ 284 (335)
....++.+.+||..+++.+..+.. ...+..++|+|||+ ++++++.|+.|++||..+++++..+.. +..
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~-~g~ 362 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE-LGS 362 (373)
T ss_pred CceEEeecCCCeEEEEECCCCcEEEEecC----CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC-CCC
Confidence 445567899999999988877642 34467899999998 457899999999999999999888863 444
Q ss_pred CeEEEEeCC
Q psy16316 285 PVQTIQFNP 293 (335)
Q Consensus 285 ~v~~v~~sp 293 (335)
.-+.|++-+
T Consensus 363 ~P~~l~~~~ 371 (373)
T d2madh_ 363 GPQVLSVMN 371 (373)
T ss_pred CCcEEEEec
Confidence 445666544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=6.4e-17 Score=139.15 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=181.9
Q ss_pred EEEEecCCCeEEEEEccCCccee--eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee---cCCCCC
Q psy16316 35 LLISCSEDDQIVIYDCELGTNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF---PGHTKK 109 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~---~~H~~~ 109 (335)
.+++++.|++|++||++....+. ....+...+..++|+|++...+ +++..|+.|++|++........+ ..+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~-v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLY-VGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEE-EEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEE-EEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 46788999999999997665433 3335667789999999977654 55567899999999765433322 234456
Q ss_pred eEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCc
Q psy16316 110 VNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGP 184 (335)
Q Consensus 110 V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~ 184 (335)
+..++|+|+|++|+.++. ++++++|+........... .......+.++|+++.++++. .+..+.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence 778999999999888875 7789999887655433332 222334568999999877765 45689999986533221
Q ss_pred eeeEE-eccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCee----eeeec---ccccCCCCceEEEEcCCCcEE
Q psy16316 185 FSNFK-FAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQC----LQTLA---GFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~----~~~~~---~~~~~~~~v~~~~~sp~~~~l 255 (335)
..... ...........++|++++.+++... ..+...+++...... ...+. ........+..++++|+++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 11111 1112223346799999999887665 445677777543221 11111 111223345678899999865
Q ss_pred E-EEeCCCcEEEEECCCCeeEEEe--CCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccccc
Q psy16316 256 I-SGSTDGRIHIWNAEKGFKVCVL--DADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 256 ~-tgs~dg~v~iwd~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~ 315 (335)
+ ++..++.+.+|+.......... ...+......++|+|+|++|+.++ +++++|..+..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG 310 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 310 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCC
Confidence 4 4556788999987654221111 112334567899999999876663 5699997766544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.80 E-value=3.6e-16 Score=136.96 Aligned_cols=286 Identities=12% Similarity=-0.044 Sum_probs=186.6
Q ss_pred eccCCccEEEEEECCCCCEEEEe-----cCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------
Q psy16316 17 FRENTDKITSIDYSADGLLLISC-----SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST-------- 83 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasg-----s~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 83 (335)
...|.+++..++++|||+.++.. +.++.+.+||.++++....+..+. ...+.|+|++.....+..
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--CccEEEcCCCCEEEEEeecCCccccc
Confidence 34689999999999999987654 345679999999999888765443 336889998887665542
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCe-------EEEEECCCCCEEEEe--eCCCcEEEeecCCCCceeEEEecCCcceE
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKV-------NSLCLSPIDDTFISG--SYDKTVRLWDLRSPNCQGIMHVSGSRPIA 154 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V-------~~~~~~~~~~~l~s~--s~D~~i~vWd~~~~~~~~~~~~~~~~~~~ 154 (335)
..++.+++||..+++.+..+..+.... ..+.|+++++.++.. ..++.+.+|+....+..... ......
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 170 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCY 170 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeE
Confidence 357889999999999988887666544 346777887755444 44678888988765543222 223356
Q ss_pred EECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEEec-cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 155 AFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 155 ~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
.++|++. .+++.+.|+++.+||............... ...........+++++.++ ..+.++.+.+|+..+......
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEE
Confidence 6788875 456788899999999875332111111111 1111112345566666554 445678888888876643211
Q ss_pred e--ccc-------ccCCCCceEEEEcCCCcE----------EEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 233 L--AGF-------LNNKGCPLEASFTPDSKY----------VISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 233 ~--~~~-------~~~~~~v~~~~~sp~~~~----------l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
. ... .........++++|++.. +++...++.+.+||..++.....+. +...+..++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~sp 327 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQ 327 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEECC
Confidence 1 100 001112233556666544 4556677789999999998877764 556789999999
Q ss_pred CCcE--EEeee--ceeEEecc
Q psy16316 294 KFNM--MASAC--TNLAFWIP 310 (335)
Q Consensus 294 ~~~~--~~s~~--~~~~~w~~ 310 (335)
+|+. +++++ +.+++|..
T Consensus 328 DG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 328 DGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCCEEEEEEeCCCCeEEEEEC
Confidence 9974 45554 56888865
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4.5e-16 Score=133.75 Aligned_cols=254 Identities=13% Similarity=0.158 Sum_probs=170.5
Q ss_pred cCCccEEEEEECCCCCEE-EEecCCCeEEEEEccCCcceeeeec---ccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 19 ENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.|.+.|+.++|+|||++| ++++.|++|++|++........... ....+..+++++++...+.+ ...++.+.+|+.
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~-~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG-SYNAGNVSVTRL 112 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE-ETTTTEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeec-ccCCCceeeecc
Confidence 688999999999999988 5556799999999987654433322 23446678999987765443 445788999988
Q ss_pred CCCceEe--eecCCCCCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCceeEEEe-------cCCcceEEECCCCCEEE
Q psy16316 95 HDNKYIR--YFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 95 ~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 164 (335)
....... ....|...+.++.++|+++.++.++ .+..|.+|+............ ......+++++++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence 7665433 3445777888999999999877776 456799999876543322111 11123567888887765
Q ss_pred EE-EcCCeEEEEEccCCCCCcee--eEEecc---CCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccc
Q psy16316 165 VG-VNSDTIKLYDVRSFDKGPFS--NFKFAA---EKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 165 ~~-~~d~~v~iwd~~~~~~~~~~--~~~~~~---~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
.. ...+...+++.......... ...... ........+++++++++++... .++.+.+|++........+..+.
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 272 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence 54 45567888886542221111 111111 1112235688999999877654 56789999987665555555444
Q ss_pred cCCCCceEEEEcCCCcEEEEEe-CCCcEEEE--ECCCCe
Q psy16316 238 NNKGCPLEASFTPDSKYVISGS-TDGRIHIW--NAEKGF 273 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iw--d~~~~~ 273 (335)
.....+..++|+|||++|++++ .++.|++| |..+|.
T Consensus 273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence 4445677899999999876665 46889999 455664
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=1.1e-16 Score=139.24 Aligned_cols=260 Identities=11% Similarity=0.031 Sum_probs=169.8
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEe----------cCCCeEEEEEccCCcceeeeeccc-------ccceEEEEe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISC----------SEDDQIVIYDCELGTNKRTVFSKK-------YGVDLIRFT 72 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasg----------s~Dg~i~lwd~~~~~~~~~~~~~~-------~~~~~~~~~ 72 (335)
..++..++..+..+ .++|||||++|+.+ +.|+.|++||+++++....+..+. .....+.|+
T Consensus 37 tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s 114 (355)
T d2bbkh_ 37 AGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 114 (355)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe
Confidence 45556666655444 68999999988764 348899999999998877664332 224567899
Q ss_pred cCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCe-------EEEEECCCCCEEEE-eeCCCcEEEeecCCCCceeE
Q psy16316 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKV-------NSLCLSPIDDTFIS-GSYDKTVRLWDLRSPNCQGI 144 (335)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V-------~~~~~~~~~~~l~s-~s~D~~i~vWd~~~~~~~~~ 144 (335)
+++...+++....+..+.+|+..+++.+..+..+.... ..+.+++++..++. ...++.+.+++........
T Consensus 115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~- 193 (355)
T d2bbkh_ 115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED- 193 (355)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT-
T ss_pred cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee-
Confidence 99888887777778899999999999888776544321 22334444433222 2233333444333221110
Q ss_pred EEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccCCCEEEEEeCC-
Q psy16316 145 MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSADGKYILISTNG- 216 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~~~- 216 (335)
........+.+++..++.++.++.+.+|++................ .......++++|++..++....+
T Consensus 194 ---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~ 270 (355)
T d2bbkh_ 194 ---EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 270 (355)
T ss_dssp ---SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ---cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccC
Confidence 0111223455667777888899999999987532211111110000 00112348899999988776433
Q ss_pred ---------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc--EEEEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 217 ---------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK--YVISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 217 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
..|.+||..+++.+.++... ..+.+++|+|||+ ++++++.|+.|++||..+++.+..+.
T Consensus 271 ~~~~~~~~~~~v~v~d~~t~~~~~~~~~~----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 271 DEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CceeecCCCCeEEEEeCCCCcEEEEecCC----CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence 46999999999887776532 2356799999997 56788889999999999999888875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=5e-16 Score=134.92 Aligned_cols=273 Identities=13% Similarity=0.049 Sum_probs=177.6
Q ss_pred EEEEEECCCCCEEEEe-----cCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEee--------cCCCCeEE
Q psy16316 24 ITSIDYSADGLLLISC-----SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS--------TKIDDTVR 90 (335)
Q Consensus 24 V~~v~~s~~g~~lasg-----s~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d~~i~ 90 (335)
+...+.+|||++++.. +.+.++.+||..+++.+..+..+ ....++|+|++....+++ +..|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 3344568999987754 35678999999999888777544 344689999988665543 23478999
Q ss_pred EEEcCCCceEeeecCCC-------CCeEEEEECCCCCEEEEe--eCCCcEEEeecCCCCceeEEEecCC--------cce
Q psy16316 91 YLSLHDNKYIRYFPGHT-------KKVNSLCLSPIDDTFISG--SYDKTVRLWDLRSPNCQGIMHVSGS--------RPI 153 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~-------~~V~~~~~~~~~~~l~s~--s~D~~i~vWd~~~~~~~~~~~~~~~--------~~~ 153 (335)
+||+.+++.+..+..+. .....++|+|+++.++.+ +.+..+.+||..+++....+..... ...
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 161 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence 99999999887765432 234568999999877665 4578899999988776554432221 122
Q ss_pred EEECCCCCEEEEE-EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee-
Q psy16316 154 AAFDPEGLIFGVG-VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ- 231 (335)
Q Consensus 154 ~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~- 231 (335)
+.+.+++..+... ..++.+.+++..... ......+....+++++..++.++.++.+++|+...++...
T Consensus 162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 231 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFH----------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231 (355)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCS----------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC
T ss_pred EEEcCCCCEEEEEecCCCeEEEEeccccc----------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEE
Confidence 3445555444332 222333333332211 1111223445778888889999999999999998765321
Q ss_pred -eecccc-------cCCCCceEEEEcCCCcEEEEEeCC----------CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 232 -TLAGFL-------NNKGCPLEASFTPDSKYVISGSTD----------GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 232 -~~~~~~-------~~~~~v~~~~~sp~~~~l~tgs~d----------g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
....+. ........++++|++..++..+.+ ..|.+||..++.....++ +...+.+++|+|
T Consensus 232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~sp 309 (355)
T d2bbkh_ 232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQ 309 (355)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECC
T ss_pred eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcC
Confidence 111100 001122348899999887766544 369999999988777664 335678999999
Q ss_pred CCc--EEEeee--ceeEEecc
Q psy16316 294 KFN--MMASAC--TNLAFWIP 310 (335)
Q Consensus 294 ~~~--~~~s~~--~~~~~w~~ 310 (335)
+|+ +++++. +.|.+|.+
T Consensus 310 DG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 310 DEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp SSSCEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEEECCCCEEEEEEC
Confidence 997 445554 56788864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=2.9e-13 Score=118.36 Aligned_cols=260 Identities=11% Similarity=-0.044 Sum_probs=164.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeeccc-------ccceEEEEe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSKK-------YGVDLIRFT 72 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~~-------~~~~~~~~~ 72 (335)
..++.....++... .+.|+|||+.|+.++ .|++|++||..+++....+..+. .....++|+
T Consensus 55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S 132 (368)
T d1mdah_ 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC
Confidence 34455556666554 588999999888654 48899999999998877664332 123468899
Q ss_pred cCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-----
Q psy16316 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV----- 147 (335)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~----- 147 (335)
+++...+++ ...++.+.+||+.+++.+..+..+...... ......++..+.||++.+|++...........
T Consensus 133 pDGk~l~va-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~ 208 (368)
T d1mdah_ 133 ASSACLLFF-LFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp TTSSCEEEE-ECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred CCCCEEEEE-eCCCCeEEEEECCCCcEeEEeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccc
Confidence 988776554 345789999999999998888766543211 12235677788889888888765443222110
Q ss_pred --cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc-------CCCccceEEEEccCCCEEEEEeCC--
Q psy16316 148 --SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA-------EKECDWTGIKFSADGKYILISTNG-- 216 (335)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~~~~~-- 216 (335)
..........+++..+.. ..+.+.+++................ ........++++|++..++....+
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~ 286 (368)
T d1mdah_ 209 AQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp TSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred ccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC
Confidence 011112344555544433 2344555554331110000000000 000112347899999887765322
Q ss_pred -------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc--EEEEEeCCCcEEEEECCCCeeEEEeCCC
Q psy16316 217 -------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK--YVISGSTDGRIHIWNAEKGFKVCVLDAD 281 (335)
Q Consensus 217 -------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~tgs~dg~v~iwd~~~~~~~~~~~~~ 281 (335)
..|.+||..+++.+.++... ..+..++|+|||+ .+++++.|+.|++||..+++.+..++.+
T Consensus 287 ~~~~~~~~~v~v~D~~t~~~~~~~~~~----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 287 RSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ceeecCCceEEEEECCCCcEeEEecCC----CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence 35999999999887766532 2356799999997 4678888999999999999988887643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=1e-13 Score=121.24 Aligned_cols=284 Identities=9% Similarity=-0.062 Sum_probs=171.2
Q ss_pred cCCccEEEEEECCCCCE---EEEecCCCe--EEEEEccCCcceeeeecccccceEEEEecCCCeeEEee--------cCC
Q psy16316 19 ENTDKITSIDYSADGLL---LISCSEDDQ--IVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS--------TKI 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~---lasgs~Dg~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 85 (335)
.+.+....+...++|+. .+++..+++ +.+||..+++....+..+.. ..+++++++....+++ +..
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCcccccccc
Confidence 34555566677888874 334555555 55669999988777665443 3688999877665543 345
Q ss_pred CCeEEEEEcCCCceEeeecCCCC-------CeEEEEECCCCCEEEEee-CCCcEEEeecCCCCceeEEEecCCcceEEEC
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTK-------KVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFD 157 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~-------~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~ 157 (335)
|+.|++||..+++.+..+..|.. ....++|+|+|++|+.++ .++.+.+||+.+++............. ..
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~ 172 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HP 172 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EE
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--cc
Confidence 78899999999998887764432 234689999999887775 579999999998877665543332211 11
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEE-eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee--c
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL--A 234 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~ 234 (335)
.....++..+.|+++..+++............ .............+++++..+.. .++.+++++.......... .
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 250 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCC
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecc
Confidence 22344555566677777766543221111000 00111122234667777765543 3455666665544322111 0
Q ss_pred ccc-------cCCCCceEEEEcCCCcEEEEEeCC---------CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE-
Q psy16316 235 GFL-------NNKGCPLEASFTPDSKYVISGSTD---------GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM- 297 (335)
Q Consensus 235 ~~~-------~~~~~v~~~~~sp~~~~l~tgs~d---------g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~- 297 (335)
... ........++++|++..+.....+ .+|.+||..++.....+. +...+..++|+|+|+.
T Consensus 251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ 328 (368)
T d1mdah_ 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASD 328 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCE
T ss_pred cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEE
Confidence 000 000112347899998876554322 358999999988776554 3457889999999963
Q ss_pred -EEeee--ceeEEecc
Q psy16316 298 -MASAC--TNLAFWIP 310 (335)
Q Consensus 298 -~~s~~--~~~~~w~~ 310 (335)
++++. +.+.+|.+
T Consensus 329 ly~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEEETTTTEEEEEES
T ss_pred EEEEeCCCCeEEEEEC
Confidence 45543 45777854
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.56 E-value=4.7e-13 Score=118.18 Aligned_cols=262 Identities=12% Similarity=0.074 Sum_probs=166.5
Q ss_pred EEEEecCCCeEEEEEccCCcceeeeecc--c----cc---------------------ceEEEE---ecCCCeeEEeecC
Q psy16316 35 LLISCSEDDQIVIYDCELGTNKRTVFSK--K----YG---------------------VDLIRF---THAKQAAIHASTK 84 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~~~~~~~--~----~~---------------------~~~~~~---~~~~~~~~~~~~~ 84 (335)
.++||+.+|.|++||+.+++.++.+..- . .+ .....+ .+++. -+++...
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr-~lfV~d~ 91 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGK-YLFINDK 91 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEE-EEEEEET
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCC-EEEEEcC
Confidence 3789999999999999988877664220 0 00 011222 23332 2345556
Q ss_pred CCCeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCC--EEEEeeCCC-----------------cEEEeecCCCCceeE
Q psy16316 85 IDDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDD--TFISGSYDK-----------------TVRLWDLRSPNCQGI 144 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~--~l~s~s~D~-----------------~i~vWd~~~~~~~~~ 144 (335)
.++.|.++|+.+.+..+.++ .+...+..++|+|+++ +++..+.+. .+..+|..+......
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q 171 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ 171 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence 78999999999998877654 4567899999999987 444444432 224577777666555
Q ss_pred EEecCCcceEEECCCCCEEEEEEcCC---------------eEEEEE--------------------------ccCCCCC
Q psy16316 145 MHVSGSRPIAAFDPEGLIFGVGVNSD---------------TIKLYD--------------------------VRSFDKG 183 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~---------------~v~iwd--------------------------~~~~~~~ 183 (335)
+...+....+.++|+|+++.+.+.+. .+.+.+ ... ..
T Consensus 172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~--~~ 249 (441)
T d1qnia2 172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE--SE 249 (441)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS--CS
T ss_pred EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC--Cc
Confidence 55556566788999999887765332 122222 110 00
Q ss_pred ceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeee--------eeecccccCCCCceEEEEcCCCcE
Q psy16316 184 PFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCL--------QTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
.. ....... ...++.++|||++++++ ..+++|.+||+.+.+.. ..+.+.....-.++...|+++|..
T Consensus 250 v~---~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 250 FT---RYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp SE---EEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred eE---EEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 00 0111111 12469999999998765 56789999998754321 111111111122455689999999
Q ss_pred EEEEeCCCcEEEEECCC---------Ce-eEEEeC----CCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 255 VISGSTDGRIHIWNAEK---------GF-KVCVLD----ADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~---------~~-~~~~~~----~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+.+...|..|..|++.. .. ....++ .+|...+.+.+|+|+|++|+++++
T Consensus 326 yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred EEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 99999999999999741 11 222221 357777888899999999999964
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.42 E-value=3e-11 Score=108.78 Aligned_cols=140 Identities=9% Similarity=0.124 Sum_probs=105.6
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc-----cccceEEEEecCCCeeEEeec-------CCCCeEEEEE
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-----KYGVDLIRFTHAKQAAIHAST-------KIDDTVRYLS 93 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------~~d~~i~~~~ 93 (335)
.+.|.+++.++.. .|+.+.+||+.+++....+..+ ...+..+.|+|++...++++. +.++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 5779999988764 4789999999999876544333 356889999999887666543 3356788999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-------------------cCCcceE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-------------------SGSRPIA 154 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------------------~~~~~~~ 154 (335)
+.+++ +..+..|...+..+.|+|+|+.++.. .|+.+.+|+..++........ .+....+
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 176 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence 99887 45578899999999999999999986 578899999988765432211 1122346
Q ss_pred EECCCCCEEEEEEcC
Q psy16316 155 AFDPEGLIFGVGVNS 169 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d 169 (335)
.|+|+|+.++....|
T Consensus 177 ~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 177 WWSPNGTFLAYAQFN 191 (470)
T ss_dssp EECTTSSEEEEEEEE
T ss_pred EECCCCCccceeEec
Confidence 799999999887544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=8e-11 Score=105.97 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=88.1
Q ss_pred eeccCCccEEEEEECCCCCEEEEecC---------CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSE---------DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~---------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
.|..|...|.++.|||||++||.++. ++.+.|||+++++. ..+..+...+..+.|+|++...... .+
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~---~~ 131 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV---WN 131 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE---ET
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe---ec
Confidence 45677788999999999999998853 67889999998864 4456667778899999998876654 37
Q ss_pred CeEEEEEcCCCceEeeecCC------------------CCCeEEEEECCCCCEEEEeeCCCc-EEEee
Q psy16316 87 DTVRYLSLHDNKYIRYFPGH------------------TKKVNSLCLSPIDDTFISGSYDKT-VRLWD 135 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H------------------~~~V~~~~~~~~~~~l~s~s~D~~-i~vWd 135 (335)
+.+.++++.+++..+....+ .+....+.|+|+|+.|+....|.+ ++.|+
T Consensus 132 ~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 132 NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence 78999999988776654322 233456889999999999877644 44443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.36 E-value=2.5e-11 Score=106.95 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=152.1
Q ss_pred cCCccEEEEEECCCCCEEE-EecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCC----------
Q psy16316 19 ENTDKITSIDYSADGLLLI-SCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKID---------- 86 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~la-sgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d---------- 86 (335)
.|-.......++|||++|. +...+..|.++|+++.+..+.+.. .......++|+++++..+++..+.+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 4666788888899999874 556889999999999988776543 3456778899988776655443322
Q ss_pred -------CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC------------------------------
Q psy16316 87 -------DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK------------------------------ 129 (335)
Q Consensus 87 -------~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~------------------------------ 129 (335)
..+..+|..+.+....+... .....+.++|+|++++..+.+.
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~ 227 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK 227 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence 12345777777766655533 3567899999999888776542
Q ss_pred -----------cEEEeecCCCCceeEEEecCCcceEEECCCCCEEE-EEEcCCeEEEEEccCCCC------CceeeEEec
Q psy16316 130 -----------TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDK------GPFSNFKFA 191 (335)
Q Consensus 130 -----------~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~------~~~~~~~~~ 191 (335)
.+.+++.........+.....-.-+.++|+|+++. ++..+++|.+||+.+... .........
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~ 307 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE 307 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred CCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence 23333333323333332222334578999999764 566789999999875321 000011111
Q ss_pred cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC------Ce----eeeeeccc--ccCCCCceEEEEcCCCcEEEEEe
Q psy16316 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN------GQ----CLQTLAGF--LNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 192 ~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~------~~----~~~~~~~~--~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.+..-.....+|+++|....+..-|..|..|++.. +. ....+..| .+|...+.+.+|+|||++|++++
T Consensus 308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 11111113358999998777778899999999741 11 22223222 23333445578999999999994
Q ss_pred C
Q psy16316 260 T 260 (335)
Q Consensus 260 ~ 260 (335)
.
T Consensus 388 k 388 (441)
T d1qnia2 388 K 388 (441)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.27 E-value=1.6e-08 Score=84.22 Aligned_cols=239 Identities=12% Similarity=0.159 Sum_probs=157.2
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc------cccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK------KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
....|+++++|+++++-.....|++||.+ ++.+..+... ......+++.......+......++.+.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 47899999999998888888999999965 5544443211 112334455555455555555556677777754
Q ss_pred CceEeee-cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC---CcceEEECCCCCEEEEEEcCCeE
Q psy16316 97 NKYIRYF-PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG---SRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 97 ~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
++....+ .........+++.++++.+++....+.+.++|... +....+.... ....+++.++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccce
Confidence 4444444 33456678999999999888888888888888543 3333332111 12346788999999999889999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
++||... .....+.. ...-....+++++|+|+.+++-.. ++.|.+|+. +++.++.+.... ....+..+++.|+
T Consensus 181 ~~~d~~G---~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~-~~~~p~~vav~~d 254 (279)
T d1q7fa_ 181 KVFNYEG---QYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-KHAQCFDVALMDD 254 (279)
T ss_dssp EEEETTC---CEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-CCSCEEEEEEETT
T ss_pred eeeecCC---ceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCC-CCCCEeEEEEeCC
Confidence 9999753 12222211 111223468999999997766543 456999984 577666664322 2235788999999
Q ss_pred CcEEEEEeCCCcEEEEECCC
Q psy16316 252 SKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~ 271 (335)
|.++++ +.+.+|++|....
T Consensus 255 G~l~V~-~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 255 GSVVLA-SKDYRLYIYRYVQ 273 (279)
T ss_dssp TEEEEE-ETTTEEEEEECSC
T ss_pred CcEEEE-eCCCeEEEEEeee
Confidence 976655 5789999998754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=6.4e-09 Score=85.79 Aligned_cols=240 Identities=11% Similarity=0.074 Sum_probs=146.7
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE-eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI-RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI 144 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~ 144 (335)
...+++.+++. ..++.....+.+..++....... ....+ ......+++.++++.+++....+.+++++-........
T Consensus 16 P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 16 PSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp EEEEEECTTCC-EEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence 34455554433 22333344455555544433222 22222 23456889999999888888888888877555433221
Q ss_pred EEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC
Q psy16316 145 MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~ 224 (335)
.........++++++++++++-..+..+..++...... . . ..........+++++|+++.+++...++.|..++.
T Consensus 94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~---~-~-~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---T-V-LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC---E-E-CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeeeecccccccccceeEeecccccccccccccccee---e-e-eeecccCCcceeeecCCCCEeeecccccccccccc
Confidence 11112234567889999988877777777777643211 1 1 11111123367999999998888888888999997
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
....... +. ......+..++++|+|.++++....++|..++....... .........-..++++++|.++++-..+
T Consensus 169 ~~~~~~~-~~--~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 169 ESNNQVV-LP--FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp TTCCEEE-CC--CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred ccceeee-ee--ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence 7553322 11 122345678999999999999988999999987554332 2222233455799999999988876666
Q ss_pred eEEecccccccc
Q psy16316 305 LAFWIPTYLSNH 316 (335)
Q Consensus 305 ~~~w~~~~~~~~ 316 (335)
-+|+..+...+|
T Consensus 245 ~rI~~i~~~~~~ 256 (260)
T d1rwia_ 245 DRVVKLTSLEHH 256 (260)
T ss_dssp TEEEEECCCGGG
T ss_pred CEEEEEeCCCCc
Confidence 677766555554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=5.1e-08 Score=84.44 Aligned_cols=253 Identities=11% Similarity=0.110 Sum_probs=138.7
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc--cccceEEEEecCCCeeEEeecC-CCCeEE-----
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQAAIHASTK-IDDTVR----- 90 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~d~~i~----- 90 (335)
.+...++.+.|+|++++|.++.. +.+..|.+...........+ ......+.+.+++...+++.+. ..+.+.
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 35556778999999999887765 56778877643322222111 1223334444444433333221 123333
Q ss_pred -------EEEcCCC-ce---Eee-ecCCCCCeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEE-Ee-----cCCc
Q psy16316 91 -------YLSLHDN-KY---IRY-FPGHTKKVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIM-HV-----SGSR 151 (335)
Q Consensus 91 -------~~~~~~~-~~---~~~-~~~H~~~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~-~~-----~~~~ 151 (335)
+..+... +. ... -+.....+.++.|+|+|++++.+.. ...|.+|+.......... .. ....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 3332211 11 111 1112234789999999998777653 457888876543322211 11 1122
Q ss_pred ceEEECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEEec---c-----------CCCccceEEEEccCCCEEEEEeCC
Q psy16316 152 PIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKFA---A-----------EKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
.-+.|+|+++++. +...+++|.+|++.............. . ........+.++|+|++|+++..+
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 3478999998764 455678999999875432222211110 0 000112468899999999887431
Q ss_pred ------CeEEEEECCCCeeeeee---cccccCCCCceEEEEcC-CCcEEEEE-eCCCcEEEEECCCC
Q psy16316 217 ------SIIRTFDAYNGQCLQTL---AGFLNNKGCPLEASFTP-DSKYVISG-STDGRIHIWNAEKG 272 (335)
Q Consensus 217 ------~~i~i~d~~~~~~~~~~---~~~~~~~~~v~~~~~sp-~~~~l~tg-s~dg~v~iwd~~~~ 272 (335)
..|..|++.....+... .........+..++|+| +|++|+++ ..++.|.+|+....
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 23777776543222211 11111223466799998 78977655 56788999987544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.16 E-value=2.3e-08 Score=84.24 Aligned_cols=235 Identities=11% Similarity=0.045 Sum_probs=143.8
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+++..|.... .+..++++|||+++++...+++|..||.+... ..
T Consensus 19 ~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~--------------------------------- 62 (302)
T d2p4oa1 19 KIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QI--------------------------------- 62 (302)
T ss_dssp EEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EE---------------------------------
T ss_pred cEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EE---------------------------------
Confidence 3344454332 58899999999999999999988877753211 00
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce--eEEEecC--CcceEEECCCCCEEEEEE
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ--GIMHVSG--SRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~ 167 (335)
+......+.++++.++|+++++...++.+..|+....... ....... ....+.+.++++++++.+
T Consensus 63 -----------~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~ 131 (302)
T d2p4oa1 63 -----------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS 131 (302)
T ss_dssp -----------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET
T ss_pred -----------EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecc
Confidence 0012345789999999999999888888888887543322 1222211 223467889999998888
Q ss_pred cCCeEEEEEccCCCCCceeeEEec--------cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFA--------AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
.++.+..+|..... ....... ........++.++. +...++.+..+.|..++.............. .
T Consensus 132 ~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~ 206 (302)
T d2p4oa1 132 YRGAIWLIDVVQPS---GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-E 206 (302)
T ss_dssp TTTEEEEEETTTTE---EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-E
T ss_pred ccccceeeeccCCc---ceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-C
Confidence 88888888765421 1111100 01111224555543 2334455667888888876543322221111 1
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-CCCCCCeEEEEe---CCCCcEEE
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQF---NPKFNMMA 299 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~---sp~~~~~~ 299 (335)
...+..++|+++|+++++...+++|..++.. +....... .......+.++| +|+++.|.
T Consensus 207 ~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly 269 (302)
T d2p4oa1 207 QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY 269 (302)
T ss_dssp SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred CCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence 2335679999999999998889999999875 33322222 112345789999 66776543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.13 E-value=1.7e-07 Score=79.23 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=143.8
Q ss_pred EEEEEECCCCCEEEEecC-------CCeEEEEEccCCcceeeeecc----cccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 24 ITSIDYSADGLLLISCSE-------DDQIVIYDCELGTNKRTVFSK----KYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~-------Dg~i~lwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.-.++|+++|++.++... +|+|..||.+++......... ......+++.++....+++.. .+.+...
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~--~~~i~~~ 97 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM--RLGLLVV 97 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET--TTEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC--CCeEEEE
Confidence 456789999997766433 467889998877543322111 112445777777665554432 3567777
Q ss_pred EcCCCceEeeec---CCC-CCeEEEEECCCCCEEEEeeC---------------CCcEEEeecCCCCceeEEEecCCcce
Q psy16316 93 SLHDNKYIRYFP---GHT-KKVNSLCLSPIDDTFISGSY---------------DKTVRLWDLRSPNCQGIMHVSGSRPI 153 (335)
Q Consensus 93 ~~~~~~~~~~~~---~H~-~~V~~~~~~~~~~~l~s~s~---------------D~~i~vWd~~~~~~~~~~~~~~~~~~ 153 (335)
+.+......... +.. ...+.+.+.++|++.+|-.. ++.|..++.. ++.......-....-
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG 176 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG 176 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence 776554322111 111 13578999999998887432 2234344332 222222111111223
Q ss_pred EEECCCCC-----EEEEEEcCCeEEEEEccCCCCCceeeEE----eccCCCccceEEEEccCCCEEEEEeCCCeEEEEEC
Q psy16316 154 AAFDPEGL-----IFGVGVNSDTIKLYDVRSFDKGPFSNFK----FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224 (335)
Q Consensus 154 ~~~~~~~~-----~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~ 224 (335)
++++|++. ++++.+..+.|..||+... ....... ..........+++++++|++.++....+.|..||.
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~--g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCc--cccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 56766653 5666677788988887642 1111111 11111222357999999998888888899999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECC
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAE 270 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~ 270 (335)
+.++....+.. ....+.+++|.|+++ +++|.+.+++|...++.
T Consensus 255 ~~g~~~~~i~~---p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 255 DGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCEEEEEEEC---CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 87765555432 224567899999986 66888888988888865
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=7.4e-08 Score=79.22 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=145.7
Q ss_pred cEEEEEECCCCCEEEE-ecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 23 KITSIDYSADGLLLIS-CSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 23 ~V~~v~~s~~g~~las-gs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
....|+++++|.+.++ .+..+.+..++...................+++.+++. +..+....+.+++++..+...+.
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~--i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC--EEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC--EEEeeeeeceeeeeeeccceeee
Confidence 3579999999996554 55667777776554432222222223455667766543 44444445566665544444443
Q ss_pred eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
...+ ......+++.++++++++-.....+..++.......... ........++++++++++++...++.+..+|....
T Consensus 93 ~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 93 PFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence 3332 356789999999998888777777888876553322111 11112245788899999888888889999987642
Q ss_pred CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
. .. ......-....+++++++|+++++....+.|..++...... ..+. ......+..++++++|.++++-..
T Consensus 172 ~---~~--~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~--~~~~~~P~~i~~d~~g~l~vad~~ 243 (260)
T d1rwia_ 172 N---QV--VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP--FTGLNTPLAVAVDSDRTVYVADRG 243 (260)
T ss_dssp C---EE--ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC--CCSCCCEEEEEECTTCCEEEEEGG
T ss_pred e---ee--eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc--cCCCCCeEEEEEeCCCCEEEEECC
Confidence 1 11 11111112346799999999888777778888887654422 1111 112245678999999998888777
Q ss_pred CCcEEEEECC
Q psy16316 261 DGRIHIWNAE 270 (335)
Q Consensus 261 dg~v~iwd~~ 270 (335)
+++|+.++..
T Consensus 244 ~~rI~~i~~~ 253 (260)
T d1rwia_ 244 NDRVVKLTSL 253 (260)
T ss_dssp GTEEEEECCC
T ss_pred CCEEEEEeCC
Confidence 7878777643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=4.5e-07 Score=74.25 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=135.1
Q ss_pred eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC-CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE
Q psy16316 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122 (335)
Q Consensus 44 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l 122 (335)
.|.|-|.+ |...+.+......+...+|+|++....+..... ...+.+.+...+... .+..+........|+|++..+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence 57777765 555566666666677889999988766554332 234555555555443 344567888899999999987
Q ss_pred EEeeC-CCcEEEeecCCCC--ceeEEEecCCcceEEECCCCCEEEE-EEcCCeEEE--EEccCCCCCceeeEEeccCCCc
Q psy16316 123 ISGSY-DKTVRLWDLRSPN--CQGIMHVSGSRPIAAFDPEGLIFGV-GVNSDTIKL--YDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 123 ~s~s~-D~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~v~i--wd~~~~~~~~~~~~~~~~~~~~ 196 (335)
+..+. ++...++...... ...............+.+++..+.. ...++...+ .++.... .. .......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~---~~---~~~~~~~ 171 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQ---RITWEGS 171 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CE---ECCCSSS
T ss_pred eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc---ce---eeecccc
Confidence 76553 3333333322211 1111111222223345666554433 334444444 4443211 11 1112223
Q ss_pred cceEEEEccCCCEEEEEeCCC---eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC---CCcEEEEECC
Q psy16316 197 DWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST---DGRIHIWNAE 270 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~---dg~v~iwd~~ 270 (335)
......++|++..++..+.++ .+.+.+...+... .+. .........|||||+.||-.+. ...|+++++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccccccccceeEEEeecCCceeeeEeecccccce-Eee----cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 345578999999988765543 4666666655432 221 1223456789999998875554 3468899987
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
.+... .+.. ..+.+...+|||-
T Consensus 247 g~~~~-~lt~-~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 247 GRFKA-RLPA-TDGQVKFPAWSPY 268 (269)
T ss_dssp SCCEE-ECCC-SSSEEEEEEECCC
T ss_pred CCCEE-EEeC-CCCcEEeEEeCCC
Confidence 65543 3433 4567888999993
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.08 E-value=9.3e-07 Score=74.76 Aligned_cols=239 Identities=8% Similarity=0.053 Sum_probs=147.2
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--CCeEEEEEcCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI--DDTVRYLSLHDN 97 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~ 97 (335)
....+-.+.|+++|++.++-...+.|..||.++++....+.........+++.+++...+...+.. .+.+...+....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 344456899999999888888899999999887765555544555667788877765433323322 233444454444
Q ss_pred ceEeeecCC--CCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCcceEEECCCCCE-EEEEEc
Q psy16316 98 KYIRYFPGH--TKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI-FGVGVN 168 (335)
Q Consensus 98 ~~~~~~~~H--~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 168 (335)
......... ....+.+.+.++|++.++.... +.+..++........+...-....-++++|+++. +++-+.
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~ 197 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 197 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence 443333221 2357889999999977774321 2355555443333322222222345789999974 566677
Q ss_pred CCeEEEEEccCCCCCceeeE----EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc---cCCC
Q psy16316 169 SDTIKLYDVRSFDKGPFSNF----KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL---NNKG 241 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~~~ 241 (335)
.+.|..||+..... ..... ...........+++++++|++.++...++.|.+||. .++.+.++.... .+..
T Consensus 198 ~~~I~~~d~~~~g~-~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 198 ANRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp GTEEEEEEECTTSS-SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred CCceEEEEEcCCCc-eeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence 88999999864221 11111 111111112357999999998888888999999996 677777664322 2233
Q ss_pred CceEEEEcCCCcEEEEEeC
Q psy16316 242 CPLEASFTPDSKYVISGST 260 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~ 260 (335)
.+.+++|.|+...+++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 276 RSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp BCCEEEECTTSCEEEEEEE
T ss_pred eeeeEEEeCCCCEEEEEcC
Confidence 4668999998776655443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.96 E-value=8.8e-07 Score=76.40 Aligned_cols=246 Identities=10% Similarity=-0.010 Sum_probs=134.1
Q ss_pred ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC--CCCCeEEEEECCCCCE--EEEee-CCCcEEEeecCC
Q psy16316 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG--HTKKVNSLCLSPIDDT--FISGS-YDKTVRLWDLRS 138 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~--l~s~s-~D~~i~vWd~~~ 138 (335)
..+..+++++++.....+. .+.+..|.+.....+..... .......+.++++++. ++++. ..++|..+.+..
T Consensus 40 ~~~s~la~s~d~~~ly~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAA---MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEE---BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCEEEEcCCCCEEEEEe---CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 3456788888876655543 35677776654322222211 1234557778888863 44433 245555554422
Q ss_pred CC------------ce-eEE-E----ecCCcceEEECCCCCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccCCCccce
Q psy16316 139 PN------------CQ-GIM-H----VSGSRPIAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199 (335)
Q Consensus 139 ~~------------~~-~~~-~----~~~~~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (335)
.. .. ... . .......+.++|+|+++.++.. ...|.+|+.......................
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence 11 00 000 0 0112346789999997776653 4588888765422111111111112223457
Q ss_pred EEEEccCCCEEEEEeC-CCeEEEEECCCCeee--eeeccc--------------ccCCCCceEEEEcCCCcEEEEEeC--
Q psy16316 200 GIKFSADGKYILISTN-GSIIRTFDAYNGQCL--QTLAGF--------------LNNKGCPLEASFTPDSKYVISGST-- 260 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~--~~~~~~--------------~~~~~~v~~~~~sp~~~~l~tgs~-- 260 (335)
.++|+|+++++.+..+ ++.|.+|+....+.. ...... .........+.++|||++|+++..
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence 7999999999877654 678999998654322 111100 001112346889999999877642
Q ss_pred ----CCcEEEEECCCCeeE----EEeC-CCCCCCeEEEEeCC-CCcEEEeee---ceeEEecccc
Q psy16316 261 ----DGRIHIWNAEKGFKV----CVLD-ADHPSPVQTIQFNP-KFNMMASAC---TNLAFWIPTY 312 (335)
Q Consensus 261 ----dg~v~iwd~~~~~~~----~~~~-~~h~~~v~~v~~sp-~~~~~~s~~---~~~~~w~~~~ 312 (335)
.+.|..|+......+ .... ......-..++|+| +|++|+.+. ++|.+|..+.
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 223777776543111 1111 11223446789998 788776663 5689886543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.95 E-value=7e-07 Score=75.36 Aligned_cols=218 Identities=11% Similarity=0.108 Sum_probs=129.7
Q ss_pred CCeEEEEEcCCCceEeeecCC----CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cC----CcceEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGH----TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SG----SRPIAAF 156 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H----~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~----~~~~~~~ 156 (335)
++.|..||..++......... ...-..+.+.++++.++.+...+.|...|............ .+ ...-+.+
T Consensus 45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~ 124 (314)
T d1pjxa_ 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF 124 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence 456777888776554333221 12356899999998888887777788888765432211111 11 1134678
Q ss_pred CCCCCEEEEEEcC---------------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC----EEE-EEeCC
Q psy16316 157 DPEGLIFGVGVNS---------------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK----YIL-ISTNG 216 (335)
Q Consensus 157 ~~~~~~~~~~~~d---------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l~-~~~~~ 216 (335)
+++|+++++.... +.+..++.. +....... . -..-++++|+|++. .|+ +-+..
T Consensus 125 d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d----g~~~~~~~--~-~~~pNGi~~~~d~d~~~~~lyv~d~~~ 197 (314)
T d1pjxa_ 125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVDT--A-FQFPNGIAVRHMNDGRPYQLIVAETPT 197 (314)
T ss_dssp CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEEE--E-ESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCCCCEEEecCccCcccccccceeccCCceEEEEeec----CceeEeeC--C-cceeeeeEECCCCCcceeEEEEEeecc
Confidence 9999988875321 223333221 11111110 0 01125789999875 444 45667
Q ss_pred CeEEEEECCCCeeeee---ecccc-cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 217 SIIRTFDAYNGQCLQT---LAGFL-NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~---~~~~~-~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
+.|..|++.....+.. +.... .....+-.+++.++|+++++....+.|.+||...+.....+.. +....++++|.
T Consensus 198 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg 276 (314)
T d1pjxa_ 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFK 276 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEEC
T ss_pred cceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-CCCCEEEEEEe
Confidence 8888888653322221 11111 1122355789999999988888889999999876654444433 33567899999
Q ss_pred CCCc-EEEeeeceeEEeccc
Q psy16316 293 PKFN-MMASACTNLAFWIPT 311 (335)
Q Consensus 293 p~~~-~~~s~~~~~~~w~~~ 311 (335)
|+++ +.++...+.+||..+
T Consensus 277 ~d~~~lyVt~~~~g~i~~~~ 296 (314)
T d1pjxa_ 277 PQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEE
Confidence 9986 556666666777653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.4e-06 Score=68.78 Aligned_cols=224 Identities=13% Similarity=0.121 Sum_probs=122.4
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCC---eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE-
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDD---QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY- 91 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~- 91 (335)
.+..+.+.+..-+|||||++||-.+.+. .+.+.+...+... .+...........|++++...++.....+.....
T Consensus 33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 111 (269)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence 3445567788999999999988654332 4555566555433 3344455667788888877666554433332222
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCCE-EEEeeCCCcEEEe--ecCCCCceeEEEecCCcceEEECCCCCEEEEEEc
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLW--DLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D~~i~vW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+......... ...+........+++++.. +++...++...+| ++...................++|++..++....
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 190 (269)
T d2hqsa1 112 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 190 (269)
T ss_dssp EETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred ccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence 2222222222 2233444455567776654 4444455554444 4444332222222222334578999988776654
Q ss_pred C-CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---CCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 169 S-DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---GSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 169 d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+ +...+|...... .... . .. .........|||||+.|+..+. ...++++++..+.. +.+.. ....+.
T Consensus 191 ~~~~~~i~~~~~~~-~~~~-~--~~-~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~---~~g~~~ 261 (269)
T d2hqsa1 191 NGGQQHIAKQDLAT-GGVQ-V--LS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPA---TDGQVK 261 (269)
T ss_dssp CSSCEEEEEEETTT-CCEE-E--CC-CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCC---SSSEEE
T ss_pred cCCceeeeEeeccc-ccce-E--ee-cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeC---CCCcEE
Confidence 4 444444443221 1111 1 11 1222345789999999876543 34688999987654 33432 223445
Q ss_pred EEEEcC
Q psy16316 245 EASFTP 250 (335)
Q Consensus 245 ~~~~sp 250 (335)
..+|||
T Consensus 262 ~p~WSP 267 (269)
T d2hqsa1 262 FPAWSP 267 (269)
T ss_dssp EEEECC
T ss_pred eEEeCC
Confidence 678888
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.83 E-value=6.7e-06 Score=69.30 Aligned_cols=227 Identities=14% Similarity=0.166 Sum_probs=135.8
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCc
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNC 141 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~ 141 (335)
+..++|.++++ ++.+....+.|..++.+.++....+.........+++.++|+++++...+ +.+...|......
T Consensus 42 lEG~~~D~~G~--Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 42 LEGLNFDRQGQ--LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp EEEEEECTTSC--EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cEeCEECCCCC--EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 34566655443 44444457788888887776666655556678899999999988775433 2344444444433
Q ss_pred eeEEEecC---CcceEEECCCCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE
Q psy16316 142 QGIMHVSG---SRPIAAFDPEGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 142 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
........ ...-+.++++|+++++.... +.+..++... ........ .-...++++|+|+++.|.+
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~---~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQ---NISVANGIALSTDEKVLWV 193 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEE---EESSEEEEEECTTSSEEEE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc---ceeEEEee---ccceeeeeeeccccceEEE
Confidence 33222111 12346789999988765332 2233333321 11111111 1112367999999997755
Q ss_pred E-eCCCeEEEEECCCC-eeeeee----cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC-----C
Q psy16316 213 S-TNGSIIRTFDAYNG-QCLQTL----AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA-----D 281 (335)
Q Consensus 213 ~-~~~~~i~i~d~~~~-~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~-----~ 281 (335)
+ +..+.|+.|++... ...... .........+-.++++++|++.++...+++|.+||. +|..+..+.. +
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG 272 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCC
Confidence 5 55688999987532 211111 111111223567999999999999999999999996 6776655532 2
Q ss_pred CCCCeEEEEeCCCCcEEEee
Q psy16316 282 HPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 282 h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+++++|.|....+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEE
T ss_pred cCceeeeEEEeCCCCEEEEE
Confidence 34467899999987655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=1.5e-05 Score=65.58 Aligned_cols=232 Identities=10% Similarity=0.163 Sum_probs=138.5
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC------CCCCeEEEEECCCC-CEEEE-eeCCCcEEEeecCC
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG------HTKKVNSLCLSPID-DTFIS-GSYDKTVRLWDLRS 138 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~------H~~~V~~~~~~~~~-~~l~s-~s~D~~i~vWd~~~ 138 (335)
..+++.++++ ++.+-...+.|++||.+ ++.+..+.. ....-..+++.++. ..++. .+.++.|..++..
T Consensus 26 ~gvavd~dg~--i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 26 SGVAVNAQND--IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp EEEEECTTCC--EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred cEEEEcCCCC--EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 4455555433 33333345677777754 455544421 11223455555543 33433 4456678788754
Q ss_pred CCceeEEEecC--CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 139 PNCQGIMHVSG--SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
+.....+.... ....+++.+++.++++....+.+.+++... .....+.. .........++++++++.+++....
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g---~~~~~~g~-~~~~~~~~~i~~d~~g~i~v~d~~~ 177 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRA 177 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC---ceeecccc-cccccccceeeeccceeEEeeeccc
Confidence 33333332211 123467888999888887778888887542 22222221 1222334678999999988888888
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC-CCcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCC
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPK 294 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~ 294 (335)
+.|++||.. ++.+.++.. ......+..++++|+|+++++-+. +++|.+|+. +|.....+. .........|++.|+
T Consensus 178 ~~V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 178 HCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp TEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred cceeeeecC-Cceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 999999964 455555532 223445788999999998887654 457999985 465444332 222335689999999
Q ss_pred CcEEEeee-ceeEEec
Q psy16316 295 FNMMASAC-TNLAFWI 309 (335)
Q Consensus 295 ~~~~~s~~-~~~~~w~ 309 (335)
|.++++.. ..|++|.
T Consensus 255 G~l~V~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVLASKDYRLYIYR 270 (279)
T ss_dssp TEEEEEETTTEEEEEE
T ss_pred CcEEEEeCCCeEEEEE
Confidence 98766543 3466664
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.79 E-value=3.2e-07 Score=77.00 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=129.9
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
.+..+... ..+..+++.|+|+++++...+++|..||... .........+....++++++|+++++...++.+..++..
T Consensus 20 v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 20 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 34444422 2578999999999999999999999998653 333333444455678899999999999888888888876
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-------ccCCCCceEEEEcCC
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-------LNNKGCPLEASFTPD 251 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~~~~sp~ 251 (335)
.... ....+.... .....+.+++.++++++++.+.++.+..++...+......... ......+..+.++.
T Consensus 98 ~~~~-~~~~~~~~~-~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~- 174 (302)
T d2p4oa1 98 KSDG-TVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG- 174 (302)
T ss_dssp CTTS-CEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-
T ss_pred cccc-ceeeccccC-CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-
Confidence 5322 222222211 1223578999999999888888888999998876533222110 01111233455543
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeE--EEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKV--CVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~--~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+.++++.+..++|+.++....... ..... +......++|.++|.+.++.. +.+..+.+
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p 236 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP 236 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence 346677778888998887643211 00101 122345789999998877654 34555544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.4e-06 Score=75.09 Aligned_cols=256 Identities=6% Similarity=0.043 Sum_probs=147.4
Q ss_pred EEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc---cccceEEEEecCCCeeEEeec-------CCCCeEEEEEcCC
Q psy16316 27 IDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK---KYGVDLIRFTHAKQAAIHAST-------KIDDTVRYLSLHD 96 (335)
Q Consensus 27 v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~d~~i~~~~~~~ 96 (335)
..|.+++.++.. ..||.|.+||+.+++....+... ...+....++++....++... +..+...++|+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 358888887654 56789999999988764333332 234667788898877665542 2356788999998
Q ss_pred CceEeee--cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------------------CCcceEE
Q psy16316 97 NKYIRYF--PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------------------GSRPIAA 155 (335)
Q Consensus 97 ~~~~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------------------~~~~~~~ 155 (335)
+...... ......+....|+|+|+.|+-.. ++.|.+.+...+......... +......
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~ 179 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence 8754432 23345566789999999988775 677888887765544332111 1123467
Q ss_pred ECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 156 FDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 156 ~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
|+|+|+.++... ++..+..+.+....... .-....+.+..-|.. .....+.++|+.++.......
T Consensus 180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~----------~p~~~~~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~ 245 (465)
T d1xfda1 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSI----------YPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMM 245 (465)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSS----------SCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECC
T ss_pred ECCCCCeEEEEEecccccceeecccccccc----------cceeeeeeccccCCC----CCceeEEEEecCCCcEEEEEe
Confidence 999999988765 33445555443211000 001111222211111 011247788887654322111
Q ss_pred c---cccCCCCceEEEEcCCCcEEEEEeC-C---CcEEEEECCCCeeEEEeCCCCCCCe----EEEEeCCCCcEE
Q psy16316 235 G---FLNNKGCPLEASFTPDSKYVISGST-D---GRIHIWNAEKGFKVCVLDADHPSPV----QTIQFNPKFNMM 298 (335)
Q Consensus 235 ~---~~~~~~~v~~~~~sp~~~~l~tgs~-d---g~v~iwd~~~~~~~~~~~~~h~~~v----~~v~~sp~~~~~ 298 (335)
. .......+..+.|+|++++++.-.. + ..+.++|..++...........++| ....|+|+|..+
T Consensus 246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred ccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 1 1112223567899999987665432 2 2578889888865444322223333 346789998743
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=0.00011 Score=64.89 Aligned_cols=272 Identities=13% Similarity=0.152 Sum_probs=140.5
Q ss_pred cEEEEEECCCCCEEEEe---------cCCCeEEEEEccCCcceeee--ecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 23 KITSIDYSADGLLLISC---------SEDDQIVIYDCELGTNKRTV--FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasg---------s~Dg~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+....|||||++++.. +..+.+.++|+.++....-. ......+....|+|++....+.. ++.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~---~~nl~~ 138 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF---ENNIYY 138 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE---TTEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe---cceEEE
Confidence 46677899999987765 34678899999988653221 11223345578899888765554 567777
Q ss_pred EEcCCCceEeeec-CCCCCe-----------------EEEEECCCCCEEEEeeC-CCcEEEeecCCC--C----c-----
Q psy16316 92 LSLHDNKYIRYFP-GHTKKV-----------------NSLCLSPIDDTFISGSY-DKTVRLWDLRSP--N----C----- 141 (335)
Q Consensus 92 ~~~~~~~~~~~~~-~H~~~V-----------------~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~--~----~----- 141 (335)
.+...+..++... |-.+.| .++.|+|+|+.|+.... +..|..+.+... . .
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y 218 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence 7777666554432 211112 46779999999888764 344555443210 0 0
Q ss_pred -----------eeEEEecCC------------------cceEEECCCCCEEEEEEc-C---CeEEEEEccCCCCCceeeE
Q psy16316 142 -----------QGIMHVSGS------------------RPIAAFDPEGLIFGVGVN-S---DTIKLYDVRSFDKGPFSNF 188 (335)
Q Consensus 142 -----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-d---~~v~iwd~~~~~~~~~~~~ 188 (335)
..++..... ...+.|.+++.+++.... + ..+.++|..+.... ...
T Consensus 219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~--~~~ 296 (465)
T d1xfda1 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT--KKH 296 (465)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE--EEE
T ss_pred cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE--EEE
Confidence 001111000 122467788776555432 1 25777777653221 111
Q ss_pred EeccCC--CccceEEEEccCCCEEE---EEeCC--CeEEEEECC------CCeeeeeecccccCCCCceE-EEEcCCCcE
Q psy16316 189 KFAAEK--ECDWTGIKFSADGKYIL---ISTNG--SIIRTFDAY------NGQCLQTLAGFLNNKGCPLE-ASFTPDSKY 254 (335)
Q Consensus 189 ~~~~~~--~~~~~~~~~s~~~~~l~---~~~~~--~~i~i~d~~------~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~ 254 (335)
....+. ........|+|+|+.++ ....+ +.++.+.+. .++..+.+.. ..-.|.. ++|+++++.
T Consensus 297 ~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~---G~w~V~~i~~~d~~~~~ 373 (465)
T d1xfda1 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS---GDWDVTKILAYDEKGNK 373 (465)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC---SSSCEEEEEEEETTTTE
T ss_pred EEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEecc---CCceEEEEEEEcCCCCE
Confidence 111100 00112357999998543 22223 234444332 2222222321 1112333 468887765
Q ss_pred E-EEEeCCC--cEEEEECC--CCeeEEEe--CCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 255 V-ISGSTDG--RIHIWNAE--KGFKVCVL--DADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 255 l-~tgs~dg--~v~iwd~~--~~~~~~~~--~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
| .++..++ .-++|.+. .+.....+ ...+.....++.|||++++++-.+
T Consensus 374 vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 374 IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 4 4555442 33455443 22221111 122334567899999999988443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.26 E-value=0.00072 Score=55.71 Aligned_cols=224 Identities=10% Similarity=0.073 Sum_probs=137.2
Q ss_pred EEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 26 SIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 26 ~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
+..|++ +|.+..+=-..+.|..||.++++.. .......+..+++..++. .++++ .+.+.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~--~~~~~~~~~~i~~~~dg~-l~va~---~~gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT--VHALPFMGSALAKISDSK-QLIAS---DDGLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEECSSCEEEEEEEETTE-EEEEE---TTEEEEEETTTCCEEEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE--EEECCCCcEEEEEecCCC-EEEEE---eCccEEeecccceeeEEee
Confidence 456776 4555555556789999999887643 223334556666665543 33333 3568889998887544322
Q ss_pred --CC--CCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEEcCCeEEEE
Q psy16316 105 --GH--TKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGVNSDTIKLY 175 (335)
Q Consensus 105 --~H--~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~v~iw 175 (335)
.. ...++.+.+.|+|++.++...+ +.-.+|.+..++...+...-.....+.++++++.+ ++.+..+.|..|
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEe
Confidence 11 2357899999999877665432 23456666555444433333334557889998754 555667888888
Q ss_pred EccCCCCC---ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc-CC
Q psy16316 176 DVRSFDKG---PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT-PD 251 (335)
Q Consensus 176 d~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s-p~ 251 (335)
++...... ....+....+......+++++++|++.++.-.++.|..||. .++.+..+.-. ...+++++|- ||
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP---~~~~T~~~FGG~d 251 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---GKQTTCPAFIGPD 251 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS---CSBEEEEEEESTT
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC---CCceEEEEEeCCC
Confidence 87532111 11111112222334568999999998888778889999995 57777766432 2347889995 66
Q ss_pred Cc-EEEEEe
Q psy16316 252 SK-YVISGS 259 (335)
Q Consensus 252 ~~-~l~tgs 259 (335)
.+ +++|.+
T Consensus 252 ~~~LyvTta 260 (295)
T d2ghsa1 252 ASRLLVTSA 260 (295)
T ss_dssp SCEEEEEEB
T ss_pred CCEEEEEEC
Confidence 55 445544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.0011 Score=54.53 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=122.7
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC-----cceEEECCCC
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS-----RPIAAFDPEG 160 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-----~~~~~~~~~~ 160 (335)
.+.|..||+.+++.. .+. ....+.++++.+++.+++++ .+ .+..+|..+++.......... .....++|+|
T Consensus 39 ~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G 114 (295)
T d2ghsa1 39 ERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 114 (295)
T ss_dssp GTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred CCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence 466777787776543 222 23567889998888777654 44 588999988775443322211 1235788999
Q ss_pred CEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCC--ee---e
Q psy16316 161 LIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNG--QC---L 230 (335)
Q Consensus 161 ~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~--~~---~ 230 (335)
++.++.... +.-.+|.+... ....... ....-++++++++++.+..+ +..+.|..|++... .. .
T Consensus 115 ~iw~~~~~~~~~~~~g~l~~~~~g---~~~~~~~---~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~ 188 (295)
T d2ghsa1 115 ALWIGTMGRKAETGAGSIYHVAKG---KVTKLFA---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188 (295)
T ss_dssp CEEEEEEETTCCTTCEEEEEEETT---EEEEEEE---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CEEEEeccccccccceeEeeecCC---cEEEEee---ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccce
Confidence 887765432 23445554321 1111111 11123689999999977655 45678888886421 11 1
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeC-CCCcE
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN-PKFNM 297 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~ 297 (335)
..+.........+-.++++.+|.+.++.-..+.|..||. ++.....+.. ....+++++|- |+...
T Consensus 189 ~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l-P~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 189 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASR 254 (295)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCE
T ss_pred EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC-CCCceEEEEEeCCCCCE
Confidence 111111223345678999999998888777889999995 5777766654 23468999995 66543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.99 E-value=0.0013 Score=52.92 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=62.5
Q ss_pred ECCC--CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--CCCC--eEEEEEcCCCceEee
Q psy16316 29 YSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--KIDD--TVRYLSLHDNKYIRY 102 (335)
Q Consensus 29 ~s~~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~--~i~~~~~~~~~~~~~ 102 (335)
.+|| |+.+|-.+ ++.|.+.|+..++. +.+..........+|+|++....+... +.+. .+.+.+..+++..+.
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence 4788 98877554 45688889987764 445555566778899999876655432 2222 366667777766543
Q ss_pred ec------CCCCCeEEEEECCCCCEEEEee
Q psy16316 103 FP------GHTKKVNSLCLSPIDDTFISGS 126 (335)
Q Consensus 103 ~~------~H~~~V~~~~~~~~~~~l~s~s 126 (335)
.. +.........|+|+++.|+...
T Consensus 84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eecCCCccCccccccccccCCCCCEEEEEE
Confidence 22 1223456788999999887643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.74 E-value=0.0085 Score=50.51 Aligned_cols=274 Identities=11% Similarity=0.006 Sum_probs=133.3
Q ss_pred EEEEEECCCCCEEEEecCCC-----------eEEEEEccCCcceeee--e-cccccceEEEEecCCCeeEEeec-CCCCe
Q psy16316 24 ITSIDYSADGLLLISCSEDD-----------QIVIYDCELGTNKRTV--F-SKKYGVDLIRFTHAKQAAIHAST-KIDDT 88 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg-----------~i~lwd~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 88 (335)
+.......+|++++-|+.+. .+.+||..++.-.... . .+........+..++. ++..+ ...+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--i~v~Gg~~~~~ 99 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 99 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc--EEEeecCCCcc
Confidence 33444567889888887531 3678999887643211 1 1111122334444443 33333 34468
Q ss_pred EEEEEcCCCceEeeecCC-CCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEe--------------
Q psy16316 89 VRYLSLHDNKYIRYFPGH-TKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHV-------------- 147 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H-~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~-------------- 147 (335)
+.+||..+..-...-... ...-.+++..+++..++.|+.+ ..+.+||..+......-..
T Consensus 100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence 999999877654321111 1122356677889988888753 4688999877543211000
Q ss_pred -cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCC------CccceEEEE-ccCCCEEEEEeCC---
Q psy16316 148 -SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK------ECDWTGIKF-SADGKYILISTNG--- 216 (335)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~-s~~~~~l~~~~~~--- 216 (335)
......+...+++.++..+.....+.++|.... ........... ...-..+.+ ..+++.++.+...
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~ 256 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG---DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 256 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC---EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccC---cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCC
Confidence 001112233445666666666666666665432 11111110000 000012222 3355566655421
Q ss_pred -----CeEEEEECCCCe---eeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----------cEEEEECCCCeeEEE
Q psy16316 217 -----SIIRTFDAYNGQ---CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----------RIHIWNAEKGFKVCV 277 (335)
Q Consensus 217 -----~~i~i~d~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----------~v~iwd~~~~~~~~~ 277 (335)
....+.+..... ..............-......||+++++.|+.+. .+.+||..+..=...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~ 336 (387)
T d1k3ia3 257 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 336 (387)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC
Confidence 123333332211 1111111111111122456678999999998541 478999876532111
Q ss_pred eCCCCCCCe-EEEEeCCCCcEEEeee
Q psy16316 278 LDADHPSPV-QTIQFNPKFNMMASAC 302 (335)
Q Consensus 278 ~~~~h~~~v-~~v~~sp~~~~~~s~~ 302 (335)
-...++..- ......|+|++++.|+
T Consensus 337 ~~~~~~R~~Hs~a~l~~dG~v~v~GG 362 (387)
T d1k3ia3 337 NPNSIVRVYHSISLLLPDGRVFNGGG 362 (387)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCCCcccceEEEEECCCCEEEEEeC
Confidence 112111111 1234579999999886
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.48 E-value=0.023 Score=48.23 Aligned_cols=189 Identities=16% Similarity=0.123 Sum_probs=114.3
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecC-CCCCeEEEEECCC--CCEEEEeeCCC------------------cEEEeecC
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPG-HTKKVNSLCLSPI--DDTFISGSYDK------------------TVRLWDLR 137 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-H~~~V~~~~~~~~--~~~l~s~s~D~------------------~i~vWd~~ 137 (335)
++.....+..|-+.|++..++.+.++- -...+..+...++ ..+++..+.+. .+.++|..
T Consensus 102 lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~ 181 (459)
T d1fwxa2 102 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 181 (459)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETT
T ss_pred EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecC
Confidence 334455688899999988887554332 2345666666544 45777766643 25678887
Q ss_pred CCCceeEEEecCCcceEEECCCCCEEEEEEcC-C--------------eE-----------------------EEEEccC
Q psy16316 138 SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS-D--------------TI-----------------------KLYDVRS 179 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--------------~v-----------------------~iwd~~~ 179 (335)
+.+....+...+....+.++++|+++++.+.+ . .+ .+.|.+.
T Consensus 182 tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~ 261 (459)
T d1fwxa2 182 KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 261 (459)
T ss_dssp TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccc
Confidence 76666555666666678899999988776532 1 12 3333332
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeee--------eeecccccCCCCceEEEEcC
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCL--------QTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~--------~~~~~~~~~~~~v~~~~~sp 250 (335)
........+ ..... ...++.++|||+++++++. +.++-++|++..+.. ..+.+.....--++.-+|+.
T Consensus 262 ~~~~~v~~y--IPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~ 338 (459)
T d1fwxa2 262 EASSLFTRY--IPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG 338 (459)
T ss_dssp G--CSSEEE--EEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT
T ss_pred cCCcceeEE--EecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC
Confidence 111111100 00000 1236899999999988765 578999998643211 11111111122356678999
Q ss_pred CCcEEEEEeCCCcEEEEECC
Q psy16316 251 DSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~ 270 (335)
.|.-..|--.|..|--||+.
T Consensus 339 ~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 339 RGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp TSEEEEEETTTTEEEEEEHH
T ss_pred CceEEEEeeccceEEEEecc
Confidence 98777888889999999984
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.30 E-value=0.026 Score=44.75 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC-CC-----cEEEeecCCCCceeEEEe-------cCCcc
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-DK-----TVRLWDLRSPNCQGIMHV-------SGSRP 152 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~-----~i~vWd~~~~~~~~~~~~-------~~~~~ 152 (335)
++.+.+.|+.+++..+ +..+.+.+....|+|||+.|+-... ++ .|.+.+..++....+... .....
T Consensus 20 ~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~ 98 (281)
T d1k32a2 20 CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTD 98 (281)
T ss_dssp TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSE
T ss_pred CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccc
Confidence 4567777998887654 4456677889999999998875432 22 366666666544332111 11223
Q ss_pred eEEECCCCCEEEEEE
Q psy16316 153 IAAFDPEGLIFGVGV 167 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (335)
...++|+|+.++...
T Consensus 99 ~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 99 VAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEECTTCCEEEEEC
T ss_pred ccccCCCCCEEEEEE
Confidence 467899998877653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.25 E-value=0.041 Score=46.08 Aligned_cols=233 Identities=9% Similarity=0.033 Sum_probs=112.8
Q ss_pred EEEEECCCCCEEEEecCC-CeEEEEEccCCcceeeeeccccc-ceEEEEecCCCeeEEeecC-----CCCeEEEEEcCCC
Q psy16316 25 TSIDYSADGLLLISCSED-DQIVIYDCELGTNKRTVFSKKYG-VDLIRFTHAKQAAIHASTK-----IDDTVRYLSLHDN 97 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~D-g~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~ 97 (335)
....+.++|++++.|+.+ .++.+||..+..-...-...... -...+...++.. ++..+. .-+.+.+||..+.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v-~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce-eeeccccccccccceeeeecCCCC
Confidence 356788999999999765 68999999876543211111111 122333333332 222221 1246889998876
Q ss_pred ceEeeec---------CCCC-----CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------C---Ccce
Q psy16316 98 KYIRYFP---------GHTK-----KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------G---SRPI 153 (335)
Q Consensus 98 ~~~~~~~---------~H~~-----~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------~---~~~~ 153 (335)
+-...-. .|.. .-.-+...++++.++.++.+..+.+.|..+.......... . ...+
T Consensus 158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (387)
T d1k3ia3 158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 237 (387)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence 5322110 0110 0011223345677777777777777776655432211110 0 0011
Q ss_pred EEECCCCCEEEEEEcCC--------eEEEEEccCCCCCceeeEEecc--CCCccceEEEEccCCCEEEEEeCC-------
Q psy16316 154 AAFDPEGLIFGVGVNSD--------TIKLYDVRSFDKGPFSNFKFAA--EKECDWTGIKFSADGKYILISTNG------- 216 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d~--------~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~~------- 216 (335)
.....++++++.|+... ...+.++....... ....... .......+....+++++++.++.+
T Consensus 238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~ 316 (387)
T d1k3ia3 238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 316 (387)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EeeccCCceEEEEeccCCCCCcccceeecccccccccCC-CceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence 22234566666665321 23333332211110 0011110 011112345667899988887632
Q ss_pred ----CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 217 ----SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 217 ----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
..+.+||..+.+-.. +.........-....+.|||+.|+.|+.
T Consensus 317 ~~~~~~ve~Ydp~~~~W~~-~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 317 STPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcEeceEEEEECCCCeEEE-CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 147789988775422 2111111111123456899999999984
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.02 E-value=0.053 Score=43.16 Aligned_cols=214 Identities=7% Similarity=0.019 Sum_probs=123.3
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEE-ecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLIS-CSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~las-gs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.....+..+.+.+.+++|++.++.+.- -..++.|+..+++.+.....+......+..+++........ .+....+.|.
T Consensus 26 ~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY-~~d~~~~~I~ 104 (263)
T d1npea_ 26 EAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIF-WTDSQLDRIE 104 (263)
T ss_dssp GCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEE-EEETTTTEEE
T ss_pred ccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEE-EeccCCCEEE
Confidence 333445566667889999987765554 45678888888876554433333334566777765444443 3444567899
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCCCc--EEEeecCCCCceeEEEecCCc-ceEEECCCCC-EEEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKT--VRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGL-IFGV 165 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~ 165 (335)
+.++........+.........+++.|...++. +-...+. |..-++............-.. ..+++++.+. ++.+
T Consensus 105 ~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~ 184 (263)
T d1npea_ 105 VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV 184 (263)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred EEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEE
Confidence 999876654444444456788999998766554 4322223 433455443333322211112 3467776655 4455
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeec
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~ 234 (335)
-...+.|...|+.... ..... .... ...++++. +..|..+. ..+.|...|..+++....+.
T Consensus 185 d~~~~~I~~~~~~g~~---~~~v~--~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 185 DAGTHRAECLNPAQPG---RRKVL--EGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp ETTTTEEEEEETTEEE---EEEEE--ECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred eCCCCEEEEEECCCCC---eEEEE--CCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 5566788888876421 11111 1111 12356664 55565554 56789999998887766553
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.92 E-value=0.13 Score=45.91 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=48.7
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+.+.-+|+.+++.+-+....... .+-.+...+.++.+|+.||.++.+|.++|+++.....+....-.=+.|..+|+
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~----~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk 519 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAA----WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC----CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccEEEeccCCCceeeEcCCCCCC----CcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence 45777888888766544321111 11122334667888999999999999999998777544333222356666886
Q ss_pred E
Q psy16316 297 M 297 (335)
Q Consensus 297 ~ 297 (335)
+
T Consensus 520 q 520 (571)
T d2ad6a1 520 Q 520 (571)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.85 E-value=0.075 Score=42.24 Aligned_cols=216 Identities=9% Similarity=0.066 Sum_probs=124.8
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeE
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGI 144 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~ 144 (335)
+..++|....+..+. +...++.|+..++........+..-...+.++++...+. +.++-...+.|.+.++....+..+
T Consensus 38 ~~~ld~D~~~~~iyw-sd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 38 IIGLAFDCVDKVVYW-TDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEETTTTEEEE-EETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEEEEEeCCCEEEE-EECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence 445666665554443 344567888888876655555554456788999986554 445666788999999886654433
Q ss_pred EEec-CCcceEEECCCCC-EEEEEEcCCeEEEE--EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeE
Q psy16316 145 MHVS-GSRPIAAFDPEGL-IFGVGVNSDTIKLY--DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSII 219 (335)
Q Consensus 145 ~~~~-~~~~~~~~~~~~~-~~~~~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i 219 (335)
.... .....++++|... ++.+-...+..+|+ ++... . ...+ .........++++++.++.|..+. ..+.|
T Consensus 117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~--~-~~~i--~~~~~~~P~glaiD~~~~~lYw~d~~~~~I 191 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--N-RRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191 (263)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--C-CEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC--C-ceee--eeecccccceEEEeecCcEEEEEeCCCCEE
Confidence 3221 2223456776554 44443322333344 44321 1 1111 111222346899998888886664 45789
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
...++........+.+ ...+..+++. ++.++.|-...++|...|..++.....+..........++..
T Consensus 192 ~~~~~~g~~~~~v~~~----~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 192 ECLNPAQPGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (263)
T ss_dssp EEEETTEEEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred EEEECCCCCeEEEECC----CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence 8888876544333322 2235677775 455666666778899999988877665532222233345443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.83 E-value=0.11 Score=43.98 Aligned_cols=234 Identities=12% Similarity=0.095 Sum_probs=124.2
Q ss_pred EEEECC---CCCEEEEec-CCCeEEEEEccCCcceeeeecc-cccceEEEEecCCCeeEEeecCC---------------
Q psy16316 26 SIDYSA---DGLLLISCS-EDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTKI--------------- 85 (335)
Q Consensus 26 ~v~~s~---~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------- 85 (335)
.++|.. ||+||.... .+..|-+-|+++-++.+.+... ......++....++...++..+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 556654 899866654 7899999999988876544332 12233344433333333322111
Q ss_pred ---CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC---------------------------------
Q psy16316 86 ---DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--------------------------------- 129 (335)
Q Consensus 86 ---d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--------------------------------- 129 (335)
.+.+.+.|.++.+......- ......++++++|+++++.+.+.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 12356678888776654432 23456889999999988877542
Q ss_pred -----cEEEeecCCC---CceeEEEecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCC------CceeeEEeccCC
Q psy16316 130 -----TVRLWDLRSP---NCQGIMHVSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDK------GPFSNFKFAAEK 194 (335)
Q Consensus 130 -----~i~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~------~~~~~~~~~~~~ 194 (335)
-+.+-|.+.. .....+.....-.-+.++|||+++++++ -+.++.++|++.... .+.....-..+.
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 2233333321 1111122222333467899999887765 578999999875221 000000000011
Q ss_pred CccceEEEEccCCCEEEEEeCCCeEEEEECCCC----------eeeeeeccccc--CCCCceEEEEcCCCcEEEEEeC
Q psy16316 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNG----------QCLQTLAGFLN--NKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
-..-..-+|+.+|.--.+---|..|.-|++... ..+.++..|.. |......-...|+|++|++...
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 111123578888743333336888999997422 22223322111 1000001135689999998863
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.65 E-value=0.11 Score=46.42 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=47.3
Q ss_pred eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE
Q psy16316 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 297 (335)
.+.-||+.+++.+-+........+ -..+..+.++.+|+.||.++.+|..+|+++...+......-.=+.|.-+|++
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~g----g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNG----GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCC----ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 566778888876655432211111 1234457788899999999999999999987765432111111445557863
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.33 E-value=0.32 Score=43.10 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=48.5
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+.+.-+|+.+++.+-+....... ..-.+.-.+.++..|+.||.++.+|..+|+++...+......-.=+.+.-+|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~----~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHW----NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSC----CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEeCCCCeEeeeccCCCCC----CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 45777888888876554321111 11123344678888999999999999999998776543222211245556775
Q ss_pred E
Q psy16316 297 M 297 (335)
Q Consensus 297 ~ 297 (335)
+
T Consensus 514 q 514 (560)
T d1kv9a2 514 Q 514 (560)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.31 E-value=0.34 Score=43.24 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=47.6
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+.+.-||+.+++..-+..... ....-.++..+.++..|+.||.++.+|..+|+++...+......-.=+.|.-+|+
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~----~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk 528 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ceEEEEeCCCCceecccCCCC----CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence 467778888887654432111 1111223345778888999999999999999998776543222112244555776
Q ss_pred E
Q psy16316 297 M 297 (335)
Q Consensus 297 ~ 297 (335)
+
T Consensus 529 Q 529 (596)
T d1w6sa_ 529 Q 529 (596)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.32 Score=38.40 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=121.1
Q ss_pred eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc----eEeeecCCCCCeEEEEECCCC
Q psy16316 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK----YIRYFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 44 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~H~~~V~~~~~~~~~ 119 (335)
.|+..++++.... .+......+..+.|.+..+..+.+. ..++.|.-.++.... ....+......+..+++.+.+
T Consensus 11 ~I~~~~l~~~~~~-~~~~~~~~~~~id~d~~~~~lYw~D-~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 11 EVRKMTLDRSEYT-SLIPNLRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SEEEEETTSCCCE-EEECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred eEEEEECCCCcce-eeeCCCCceEEEEEEeCCCEEEEEE-CCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 4777777654432 2222223344566665544444332 335566655554311 122233334556778887654
Q ss_pred -CEEEEeeCCCcEEEeecCCCCceeEEEecCC-cceEEECCC-CCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 120 -DTFISGSYDKTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPE-GLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 120 -~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
++.++-...+.|.+.++.............. ...++++|. |.++.+.. ..+.|...++.. .....+ ..+..
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG---s~~~~l--~~~~~ 163 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIYSL--VTENI 163 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CCEEEE--ECSSC
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC---Cceecc--ccccc
Confidence 4566667778999999887654443333222 234566664 44554432 233455555532 111111 11222
Q ss_pred ccceEEEEccCCCEEEEE-eCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 196 CDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
....++++++.+..|..+ ...+.|...++........+.. ......+..+++. ++.++.+-..++.|+..+..++..
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~-~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC-CCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence 334789999988877766 4457899888865543222222 1222345667766 345666666778888888777654
Q ss_pred EEEe
Q psy16316 275 VCVL 278 (335)
Q Consensus 275 ~~~~ 278 (335)
...+
T Consensus 242 ~~~~ 245 (266)
T d1ijqa1 242 VNLL 245 (266)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.41 E-value=0.8 Score=40.45 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCCEEEEecCCCeEEEEEc-cCCcceeeeecccc-c---c-------eEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 32 DGLLLISCSEDDQIVIYDC-ELGTNKRTVFSKKY-G---V-------DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~-~~~~~~~~~~~~~~-~---~-------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
+|.++++.+.++.|.--|. ++|+.+..+..... . . ..+++. .. .+ ..+..|+.+.-.|.++++.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~-~i-~~~~~~g~l~alda~tG~~ 137 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AG-QI-VKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TT-EE-EEECTTSEEEEEETTTCCE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CC-eE-EEEeCCCcEEeeehhhhhh
Confidence 5666666556788888887 47887765432110 0 0 011221 11 22 2334578888889999887
Q ss_pred EeeecCC---C-CCeEEEEECCCCCEEEEee------CCCcEEEeecCCCCceeEE
Q psy16316 100 IRYFPGH---T-KKVNSLCLSPIDDTFISGS------YDKTVRLWDLRSPNCQGIM 145 (335)
Q Consensus 100 ~~~~~~H---~-~~V~~~~~~~~~~~l~s~s------~D~~i~vWd~~~~~~~~~~ 145 (335)
+-...-. . ..+++--.-.++ .++.+. .+|.|+-+|+++++..-..
T Consensus 138 ~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 138 NWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred hccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence 6544211 1 112111111123 344433 3788999999999876554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.19 E-value=0.64 Score=38.09 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=82.0
Q ss_pred eEEEEECCCCCEEEEeeC------------CCcEEEeecCCCCcee-EEEec-CCc-------ceE--EECCCCCE-EEE
Q psy16316 110 VNSLCLSPIDDTFISGSY------------DKTVRLWDLRSPNCQG-IMHVS-GSR-------PIA--AFDPEGLI-FGV 165 (335)
Q Consensus 110 V~~~~~~~~~~~l~s~s~------------D~~i~vWd~~~~~~~~-~~~~~-~~~-------~~~--~~~~~~~~-~~~ 165 (335)
...+...|+|..+++++. .|.|.++|+.+..... .+... ... .-+ .-.+++.. +++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 446777788766665532 3889999987654322 11111 110 011 12344542 333
Q ss_pred E---EcCCeEEEEEccCCCCCceeeEEe-ccCCCccceEEEEccCCCEEEEEeC---------------CCeEEEEECCC
Q psy16316 166 G---VNSDTIKLYDVRSFDKGPFSNFKF-AAEKECDWTGIKFSADGKYILISTN---------------GSIIRTFDAYN 226 (335)
Q Consensus 166 ~---~~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~---------------~~~i~i~d~~~ 226 (335)
. ....+|.+|++..... ...-... ........+.+++..++.+.++-.. -....+|....
T Consensus 117 vnH~~~~~~ieif~~~~~~~-~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEK-SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EECSTTCCEEEEEEEETTTT-EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EeccCCCceeEEEEEeCCCC-eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 3 2346788888764221 1111111 1122223477888888887766321 12223333333
Q ss_pred CeeeeeecccccCCCCceEEEEcCCCcEE-EEEeCCCcEEEEECCCC
Q psy16316 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYV-ISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~tgs~dg~v~iwd~~~~ 272 (335)
++. +.+.. ....+..++++||+++| ++-+..++|++|++...
T Consensus 196 ~~~-~~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 196 NDV-RVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp SCE-EEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred Cce-EEEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 332 22211 22346779999999865 55556788999988643
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.06 E-value=1.4 Score=37.04 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=71.1
Q ss_pred ceEEEEccCCCEEEEEeC-C----CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----------
Q psy16316 198 WTGIKFSADGKYILISTN-G----SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD----------- 261 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~-~----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d----------- 261 (335)
+.+.++||++++++.+-+ + ..++++|+.+++.+....... . ...++|++|++.|.-...|
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~--~--~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--K--FSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--C--SCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc--c--ccceEEcCCCCEEEEEEeccccCccccccc
Confidence 345788999999986532 2 369999999998764321111 1 1348899999876543322
Q ss_pred -----CcEEEEECCCCee--EEEeC-CCCCCCeEEEEeCCCCcEEEee--e---ceeEEecccccccc
Q psy16316 262 -----GRIHIWNAEKGFK--VCVLD-ADHPSPVQTIQFNPKFNMMASA--C---TNLAFWIPTYLSNH 316 (335)
Q Consensus 262 -----g~v~iwd~~~~~~--~~~~~-~~h~~~v~~v~~sp~~~~~~s~--~---~~~~~w~~~~~~~~ 316 (335)
..|+.|.+.++.. ..... ...+..+..+..++++.+++.. . ....+|..+.....
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~ 270 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence 2588888776522 22232 2334567788889999886532 1 23567766554433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.44 E-value=1.5 Score=35.07 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=116.1
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeec
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFP 104 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~ 104 (335)
+.-.+|..+.+|-=+ ..++.++|+++.+.++...-.+ .+--=.|..+....++ + +..|..|+++. ..+.+.+.
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lV-T---~taVYHW~~~g~s~P~k~fd 140 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-T---DNAVYHWSMEGESQPVKMFD 140 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEE-C---SSEEEEEESSSSCCCEEEEE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEE-c---CCceEEEcccCCCCchhhhh
Confidence 344688888887665 5699999999988776654333 3322334333333332 2 56899999954 34666666
Q ss_pred CCC----CCeEEEEECCCCCEEEEee---C----CCcEEEeecCCCCceeEEEecCCcceEEECCCC-----CEEEEEE-
Q psy16316 105 GHT----KKVNSLCLSPIDDTFISGS---Y----DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-----LIFGVGV- 167 (335)
Q Consensus 105 ~H~----~~V~~~~~~~~~~~l~s~s---~----D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~- 167 (335)
-|. ..|-.-..+++.++++-.+ . .|.+.++.......+... ++......+..+| ++++.+.
T Consensus 141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r 218 (327)
T d1utca2 141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE--GHAASFAQFKMEGNAEESTLFCFAVR 218 (327)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC--CSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc--ceeeeeEEEEcCCCCCCceEEEEEEC
Confidence 553 4577777788888754422 2 355678877654322111 1111112222221 2333332
Q ss_pred --cCCeEEEEEccCCCCC-cee-----eEEeccCCCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 168 --NSDTIKLYDVRSFDKG-PFS-----NFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 168 --~d~~v~iwd~~~~~~~-~~~-----~~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
..+.+++.++.....+ +.. ...+..+...++ -++..|+....+..-+..|.+.+||++++.++..
T Consensus 219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~ 292 (327)
T d1utca2 219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 292 (327)
T ss_dssp ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence 2368899998763321 111 111122222222 3578899999999999999999999999988654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.83 E-value=2.7 Score=34.29 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=104.5
Q ss_pred CCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEe----cCCC-e-eEEeecCCC--CeEEEEEcCC-CceE
Q psy16316 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT----HAKQ-A-AIHASTKID--DTVRYLSLHD-NKYI 100 (335)
Q Consensus 30 s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~d--~~i~~~~~~~-~~~~ 100 (335)
.|+.++++...+.+-|.+||++ |+.+..+.. ..++.+..- .... . .++++...+ .++.+|.+.. ...+
T Consensus 37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp CGGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred CcCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 3456787777888889999985 666554432 223322221 1122 1 233343332 4677887753 3333
Q ss_pred eeecCC-------CCCeEEEEE--CCC-CC-EEEEeeCCCcEEEeecCC---CCc----eeEEEecCCcceEEECCCCCE
Q psy16316 101 RYFPGH-------TKKVNSLCL--SPI-DD-TFISGSYDKTVRLWDLRS---PNC----QGIMHVSGSRPIAAFDPEGLI 162 (335)
Q Consensus 101 ~~~~~H-------~~~V~~~~~--~~~-~~-~l~s~s~D~~i~vWd~~~---~~~----~~~~~~~~~~~~~~~~~~~~~ 162 (335)
..+... ...+..+|+ ++. +. +++....+|.+..|.+.. +.. .+.+........+.++.+...
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence 333221 123566666 665 43 466677889999887742 221 223344444555677887777
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEec--cCCCccceEEEEc--cCCC-EEEEEeC-CCeEEEEECCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFA--AEKECDWTGIKFS--ADGK-YILISTN-GSIIRTFDAYN 226 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~s--~~~~-~l~~~~~-~~~i~i~d~~~ 226 (335)
+..+-.+.-+..++............... ......+.++++- +++. ||+++++ +.+..+||..+
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 77787776665555543211111111111 1223456677653 3333 6666654 47799999765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.79 E-value=4.8 Score=33.58 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=68.4
Q ss_pred cCCccEEEEEECCCCCEEE-----EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec----------
Q psy16316 19 ENTDKITSIDYSADGLLLI-----SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST---------- 83 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~la-----sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 83 (335)
++.-.+....+||||+++| .|+.-.++++.|+++++....... ......+.|.+++...+...-
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccc
Confidence 4444456778899999887 233446789999999986543221 122356778887776554321
Q ss_pred ----CCCCeEEEEEcCCCc--eEeeecCCC--CCeEEEEECCCCCEEEEe---eCCCcEEEe
Q psy16316 84 ----KIDDTVRYLSLHDNK--YIRYFPGHT--KKVNSLCLSPIDDTFISG---SYDKTVRLW 134 (335)
Q Consensus 84 ----~~d~~i~~~~~~~~~--~~~~~~~H~--~~V~~~~~~~~~~~l~s~---s~D~~i~vW 134 (335)
.....+.++.+.+.. -...++... ..+..+..++++++++.. +.+....+|
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~ 262 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence 112356677776542 233444433 346677888998876532 234444555
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.49 E-value=4.1 Score=32.37 Aligned_cols=201 Identities=10% Similarity=0.175 Sum_probs=106.1
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
...+.+.|+..+..+..-+ -..-+.-.+|..+.|+--+ ..++.++|+++.+......+...+-.=.|-. .+.++.
T Consensus 44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~l 118 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVAL 118 (327)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEE
T ss_pred CceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEE
Confidence 3466777776544221111 1122445678777665554 5689999999887776665544332222222 233333
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccC-CCccceEEEEccCCCEEEEEe---CC----CeEEEEECCCCee--------
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAE-KECDWTGIKFSADGKYILIST---NG----SIIRTFDAYNGQC-------- 229 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~---~~----~~i~i~d~~~~~~-------- 229 (335)
. ++..|.=|++.. ...|..-+..... ..+++-.-..+++.++++..+ .+ |.+.+|..+....
T Consensus 119 V-T~taVYHW~~~g-~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa 196 (327)
T d1utca2 119 V-TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA 196 (327)
T ss_dssp E-CSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE
T ss_pred E-cCCceEEEcccC-CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceee
Confidence 3 345788888854 2334433322211 223444455666676665321 11 3456666543310
Q ss_pred ----------------------------e-----------------eeec---ccccCCCCceEEEEcCCCcEEEEEeCC
Q psy16316 230 ----------------------------L-----------------QTLA---GFLNNKGCPLEASFTPDSKYVISGSTD 261 (335)
Q Consensus 230 ----------------------------~-----------------~~~~---~~~~~~~~v~~~~~sp~~~~l~tgs~d 261 (335)
+ +... ........+.++-.|+....+..-+.-
T Consensus 197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~ 276 (327)
T d1utca2 197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 276 (327)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecC
Confidence 0 0000 000112344556666666788888899
Q ss_pred CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 262 g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
|.|++||++++..+..-.- -.++|...+-+.+
T Consensus 277 G~i~lyDleTgt~i~~nRI-s~~~iF~~a~~~~ 308 (327)
T d1utca2 277 GYIHLYDLETGTCIYMNRI-SGETIFVTAPHEA 308 (327)
T ss_dssp SEEEEEETTTCCEEEEEEC-CSSCEEEEEEETT
T ss_pred cEEEEEEcccccEEEEeec-CCCceEEeccCCC
Confidence 9999999999987654332 2455554444444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=88.12 E-value=7.6 Score=33.71 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=57.8
Q ss_pred EEEEecCCCeEEEEEccCCcceeeeecccc----cc-------eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee
Q psy16316 35 LLISCSEDDQIVIYDCELGTNKRTVFSKKY----GV-------DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 103 (335)
.|..++.++.|.-.|.++|+.+........ .. ..+... .. .+..+..|+.+.-.|..+++.+-..
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD--KVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT--EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CC--eEEEEeCCCEEEEEECCCCcEEecc
Confidence 455566788888899999988776421110 00 001110 11 1223345777887888888877655
Q ss_pred cCCCC-CeEEEEECC--CCCEEEEeeC------CCcEEEeecCCCCceeEEE
Q psy16316 104 PGHTK-KVNSLCLSP--IDDTFISGSY------DKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 104 ~~H~~-~V~~~~~~~--~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~ 146 (335)
..+.. .-..+.-.| .+..++.++. .|.|+-+|.++++..-.++
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 42211 101111111 1223444332 3679999999998776553
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=87.31 E-value=8.8 Score=33.59 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCeEEEEEc-cCCcceeeeecccc----c-------ceEEEEecCC--CeeEEeecCCCCeEEEEEcCCC
Q psy16316 32 DGLLLISCSEDDQIVIYDC-ELGTNKRTVFSKKY----G-------VDLIRFTHAK--QAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~-~~~~~~~~~~~~~~----~-------~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+|.++++.+.++.+..-|. ++|+.+........ . -..+++.... ....+..+..|+.+.-.|.+++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 5666666776777777776 57877665421110 0 0123332221 1223444556888888899999
Q ss_pred ceEeeecCCC-CCeEEEEECC--CCCEEEEeeC------CCcEEEeecCCCCceeEEE
Q psy16316 98 KYIRYFPGHT-KKVNSLCLSP--IDDTFISGSY------DKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 98 ~~~~~~~~H~-~~V~~~~~~~--~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~ 146 (335)
+.+..+.... ..-..+.-.| .+..++.++. .|.|+-+|+++++..-.++
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 8877654211 0000111112 1345555543 4889999999998775543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.63 E-value=5.7 Score=30.68 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=116.0
Q ss_pred cCCccEEEEEECCCCCEEEEe-cCCCeEEEEEccCCc---ceeee-ecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISC-SEDDQIVIYDCELGT---NKRTV-FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasg-s~Dg~i~lwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.....+.+++|++.++.|.-. ..++.|+.-++.... ....+ ......+..+++......... +....+.|.+.+
T Consensus 27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~-~d~~~~~I~v~~ 105 (266)
T d1ijqa1 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVAD 105 (266)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEE
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEE-EecCCCEEEeEe
Confidence 345567889999877655544 456777766654321 11222 222234556776655554444 444567899999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCC-EEEEe-eCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCC-EEEEEEcC
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISG-SYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGL-IFGVGVNS 169 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~-s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~d 169 (335)
++.......+.........++++|... ++++- +..+.|..-++............ .....+++++.+. ++.+-...
T Consensus 106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~ 185 (266)
T d1ijqa1 106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (266)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred cCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence 987766555666667788999998654 44443 33456766666544333332221 1123466777655 45555566
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeec
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~ 234 (335)
+.|...|+..... ..............++++. +..|..+. .++.|...+..+++....+.
T Consensus 186 ~~I~~~~~dG~~~---~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 186 HSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp TEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CEEEEEECCCCCE---EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 7888888764221 1111111111122345554 45555553 55678777877776555443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=84.23 E-value=12 Score=32.40 Aligned_cols=82 Identities=11% Similarity=0.172 Sum_probs=41.6
Q ss_pred cEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-
Q psy16316 130 TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK- 208 (335)
Q Consensus 130 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 208 (335)
.+.-||+.+++..-..........-.+.-.+.++.+|+.|+.++.+|.++.+. +-.+........ ..+.+..+|+
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~--LW~~~~~~~~~~--~P~ty~~~GkQ 533 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK--LWEAPTGTGVVA--APSTYMVDGRQ 533 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCS--CCEEEEETTEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcE--eEEEECCCCccc--cCEEEEECCEE
Confidence 34455555554443332222111111222456777788999999999987542 223332221111 2366667776
Q ss_pred EEEEEeC
Q psy16316 209 YILISTN 215 (335)
Q Consensus 209 ~l~~~~~ 215 (335)
|+++.+.
T Consensus 534 Yv~v~~G 540 (573)
T d1kb0a2 534 YVSVAVG 540 (573)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 4454443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.01 E-value=13 Score=32.38 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=50.9
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+.+.-+|+.+++..-+....... ..-.++..+.++.+|+.||+++.+|.++|+++...+......-.=+.|..+|+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~----~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPL----WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC----CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CeEEEEcCCCCcEEeecCCCCCC----ccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 45777888888776655432211 11223456778888999999999999999998776543322222256777885
Q ss_pred E
Q psy16316 297 M 297 (335)
Q Consensus 297 ~ 297 (335)
+
T Consensus 542 q 542 (582)
T d1flga_ 542 Q 542 (582)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.37 E-value=7 Score=32.90 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=43.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee--e------cccccceEEEEecC
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV--F------SKKYGVDLIRFTHA 74 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~--~------~~~~~~~~~~~~~~ 74 (335)
.|++.....+- +...+++|.|||++|++--.+|.|++++.+++...... . ..+.+...+++.++
T Consensus 16 ~f~~~~ia~~L-~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 16 NFDKKVILSNL-NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp TSCEEEEECCC-SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CcEEEEEECCC-CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 36666655554 56779999999999988866899999988776543211 1 11234556777764
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.42 E-value=15 Score=31.95 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=38.7
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEE
Q psy16316 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISG 258 (335)
Q Consensus 203 ~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tg 258 (335)
++-.+.++++++.|+.++-+|.++|+.+-++.........+ +.|..+|+ |+|..
T Consensus 493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGVT 547 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEE
Confidence 34467788889999999999999999988776433333333 67778885 55443
|