Psyllid ID: psy16395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MRLLNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIKI
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccEEEEEccccccccccEEEccccEEEEEccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHccccccccHHccccccccHHHHHHHHHHHHHHHccEEEccccccccccEEEccccEEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MRLLNKLivvkpglfyshfispFRQVFMDEVNQQKMLPTIRSYLKLYTtlplsklatfmgnaragqdseierDVDKETKSLITHLLAFKHKMKNvvwtrgpsglegtfqsgseldfyidnemIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIKI
Flexible Loop (DISEMBL)
MRLLNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNAragqdseierdvDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIKI
Low Complexity Region (SEG)
MRLLNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIKI
Disordered region (IsUnstruct)
***LNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGN*****************KSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELN********
Disordered Region (DISOPRED)
****NKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARA*********VDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAI**
Disordered Region (DISEMBL)
MRLLNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIKI
Disordered Region (DISPRO)
*RLLNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNA*AG*****ERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLLNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q7Q5Y8	539	Eukaryotic translation in	yes	N/A	0.789	0.230	0.712	1e-47
B0WR18	537	Eukaryotic translation in	N/A	N/A	0.796	0.232	0.687	2e-47
Q16FL6	537	Eukaryotic translation in	N/A	N/A	0.796	0.232	0.687	2e-47
Q9VTU4	539	Eukaryotic translation in	yes	N/A	0.783	0.228	0.684	1e-46
B4GR63	541	Eukaryotic translation in	N/A	N/A	0.777	0.225	0.664	2e-46
Q2M0S3	541	Eukaryotic translation in	yes	N/A	0.777	0.225	0.664	3e-46
B4PG99	539	Eukaryotic translation in	N/A	N/A	0.777	0.226	0.681	6e-46
B3NH71	539	Eukaryotic translation in	N/A	N/A	0.777	0.226	0.681	6e-46
B4QR64	539	Eukaryotic translation in	N/A	N/A	0.777	0.226	0.681	7e-46
B4HFJ3	539	Eukaryotic translation in	N/A	N/A	0.777	0.226	0.681	7e-46

>sp|Q7Q5Y8|EIF3L_ANOGA Eukaryotic translation initiation factor 3 subunit L OS=Anopheles gambiae GN=AGAP006130 PE=3 SV=3

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 111/132 (84%), Gaps = 8/132 (6%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKET-KSLITH 84
           VFMDEV QQ+ LPTIRSYLKLYTTLP+ KLA+FM   R  QD     +VD++  ++L+T 
Sbjct: 414 VFMDEVKQQQELPTIRSYLKLYTTLPIMKLASFMD--RKPQD-----EVDEQKLENLLTR 466

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LL FKHKMKNVVWT+G SGLEG FQSGSELDFYID +MIHIADTKV+HRYGDFFIRK++K
Sbjct: 467 LLCFKHKMKNVVWTKGSSGLEGKFQSGSELDFYIDKDMIHIADTKVSHRYGDFFIRKVMK 526

Query: 145 FEELNKKLQAIK 156
           FE+LN++L AIK
Sbjct: 527 FEDLNRRLHAIK 538

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Anopheles gambiae (taxid: 7165)

>sp|B0WR18|EIF3L_CULQU Eukaryotic translation initiation factor 3 subunit L OS=Culex quinquefasciatus GN=CPIJ009242 PE=3 SV=1

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 108/131 (82%), Gaps = 6/131 (4%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHL 85
           VFMDEV QQ+ LPTIRSYLKLYTTLPL KLA+FM +    +  E      ++ ++L+THL
Sbjct: 412 VFMDEVRQQQELPTIRSYLKLYTTLPLLKLASFMDHIPQDEIGE------QKIENLLTHL 465

Query: 86  LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 145
           L FKHKMKN+VWT+G SGLEG FQSGSELDFYID +MIHIADTKV+HRYGDFFIRKI+KF
Sbjct: 466 LCFKHKMKNIVWTKGASGLEGKFQSGSELDFYIDKDMIHIADTKVSHRYGDFFIRKILKF 525

Query: 146 EELNKKLQAIK 156
           E+LN++L  +K
Sbjct: 526 EDLNRRLHNLK 536

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|Q16FL6|EIF3L_AEDAE Eukaryotic translation initiation factor 3 subunit L OS=Aedes aegypti GN=AAEL009617 PE=3 SV=1

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 108/131 (82%), Gaps = 6/131 (4%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHL 85
           VFMDEV QQ+ LPTIRSYLKLYTTLPL KLA+FM +    +  E      ++ ++L+THL
Sbjct: 413 VFMDEVRQQQELPTIRSYLKLYTTLPLLKLASFMDHIPQDEIGE------QKIENLLTHL 466

Query: 86  LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 145
           L FKHKMKN+VWT+G SGLEG FQSGSELDFYID +MIHIADTKV+HRYGDFFIRKI+KF
Sbjct: 467 LCFKHKMKNIVWTKGASGLEGKFQSGSELDFYIDKDMIHIADTKVSHRYGDFFIRKIMKF 526

Query: 146 EELNKKLQAIK 156
           E+LN++L  +K
Sbjct: 527 EDLNRRLHNLK 537

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|Q9VTU4|EIF3L_DROME Eukaryotic translation initiation factor 3 subunit L OS=Drosophila melanogaster GN=CG5642 PE=2 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 110/133 (82%), Gaps = 10/133 (7%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
           QVFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+ +  A +D     DV K    L+  
Sbjct: 417 QVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFI-DPNASED-----DVSK----LLIR 466

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LL FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+K
Sbjct: 467 LLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILK 526

Query: 145 FEELNKKLQAIKI 157
           F +LN+KL+ I I
Sbjct: 527 FNDLNRKLKNINI 539

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

>sp|B4GR63|EIF3L_DROPE Eukaryotic translation initiation factor 3 subunit L OS=Drosophila persimilis GN=GL25016 PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 107/134 (79%), Gaps = 12/134 (8%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG-NARAGQDSEIERDVDKETKSLIT 83
           QVFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+  NA            D +   L+ 
Sbjct: 419 QVFMDEVRQQKDLPTTRSYLKLYTTLPLAKLASFIDPNAN-----------DDDVSKLLI 467

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
            LL FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+
Sbjct: 468 RLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKIL 527

Query: 144 KFEELNKKLQAIKI 157
           KF +LN+KL+ I I
Sbjct: 528 KFNDLNRKLKNINI 541

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila persimilis (taxid: 7234)

>sp|Q2M0S3|EIF3L_DROPS Eukaryotic translation initiation factor 3 subunit L OS=Drosophila pseudoobscura pseudoobscura GN=GA19025 PE=3 SV=1

 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 107/134 (79%), Gaps = 12/134 (8%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG-NARAGQDSEIERDVDKETKSLIT 83
           QVFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+  NA            D +   L+ 
Sbjct: 419 QVFMDEVRQQKDLPTTRSYLKLYTTLPLAKLASFIDPNAN-----------DDDVSKLLI 467

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
            LL FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+
Sbjct: 468 RLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKIM 527

Query: 144 KFEELNKKLQAIKI 157
           KF +LN+KL+ I I
Sbjct: 528 KFNDLNRKLKNINI 541

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4PG99|EIF3L_DROYA Eukaryotic translation initiation factor 3 subunit L OS=Drosophila yakuba GN=GE20146 PE=3 SV=1

 Score =  182 bits (463), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 109/132 (82%), Gaps = 10/132 (7%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHL 85
           VFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+ +  A +D     DV K    L+  L
Sbjct: 418 VFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFI-DPNASED-----DVSK----LLIRL 467

Query: 86  LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 145
           L FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+KF
Sbjct: 468 LCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILKF 527

Query: 146 EELNKKLQAIKI 157
            +LN+KL+ I I
Sbjct: 528 NDLNRKLKNINI 539

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila yakuba (taxid: 7245)

>sp|B3NH71|EIF3L_DROER Eukaryotic translation initiation factor 3 subunit L OS=Drosophila erecta GN=GG13851 PE=3 SV=1

 Score =  182 bits (463), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 109/132 (82%), Gaps = 10/132 (7%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHL 85
           VFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+ +  A +D     DV K    L+  L
Sbjct: 418 VFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFI-DPNASED-----DVSK----LLIRL 467

Query: 86  LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 145
           L FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+KF
Sbjct: 468 LCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILKF 527

Query: 146 EELNKKLQAIKI 157
            +LN+KL+ I I
Sbjct: 528 NDLNRKLKNINI 539

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

>sp|B4QR64|EIF3L_DROSI Eukaryotic translation initiation factor 3 subunit L OS=Drosophila simulans GN=GD12745 PE=3 SV=1

 Score =  182 bits (462), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 109/132 (82%), Gaps = 10/132 (7%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHL 85
           VFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+ +  A +D     DV K    L+  L
Sbjct: 418 VFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFI-DPNASED-----DVSK----LLIRL 467

Query: 86  LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 145
           L FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+KF
Sbjct: 468 LCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILKF 527

Query: 146 EELNKKLQAIKI 157
            +LN+KL+ I I
Sbjct: 528 NDLNRKLKNINI 539

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila simulans (taxid: 7240)

>sp|B4HFJ3|EIF3L_DROSE Eukaryotic translation initiation factor 3 subunit L OS=Drosophila sechellia GN=GM24677 PE=3 SV=1

 Score =  182 bits (462), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 109/132 (82%), Gaps = 10/132 (7%)

Query: 26  VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHL 85
           VFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+ +  A +D     DV K    L+  L
Sbjct: 418 VFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFI-DPNASED-----DVSK----LLIRL 467

Query: 86  LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 145
           L FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+KF
Sbjct: 468 LCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILKF 527

Query: 146 EELNKKLQAIKI 157
            +LN+KL+ I I
Sbjct: 528 NDLNRKLKNINI 539

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
332376454	548	unknown [Dendroctonus ponderosae]	0.821	0.235	0.791	3e-54
357606256	592	putative eukaryotic translation initiati	0.815	0.216	0.774	7e-54
389608829	542	eukaryotic translation initiation factor	0.910	0.263	0.711	8e-54
308512711	533	eukaryotic translation initiation factor	0.815	0.240	0.766	2e-53
332030226	530	Eukaryotic translation initiation factor	0.828	0.245	0.791	3e-53
307197884	535	Eukaryotic translation initiation factor	0.821	0.241	0.776	7e-53
307184430	554	Eukaryotic translation initiation factor	0.828	0.234	0.783	2e-52
91078690	550	PREDICTED: similar to eukaryotic transla	0.821	0.234	0.757	2e-52
66540009	538	PREDICTED: eukaryotic translation initia	0.821	0.239	0.768	5e-52
340720774	538	PREDICTED: eukaryotic translation initia	0.828	0.241	0.766	6e-52

>gi|332376454|gb|AEE63367.1| unknown [Dendroctonus ponderosae]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 118/134 (88%), Gaps = 5/134 (3%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG-NARAGQDSEIERDVDKETKSLIT 83
           QVFMDEV QQKMLPTIRSYLKLYTTLPLSKLATFM  N RA    + + D+DKET+SL+ 
Sbjct: 419 QVFMDEVQQQKMLPTIRSYLKLYTTLPLSKLATFMAQNTRA----DGQWDLDKETQSLLI 474

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
           HLL FKHKMKNVVW++G SGL+G FQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKI+
Sbjct: 475 HLLCFKHKMKNVVWSKGASGLDGKFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIL 534

Query: 144 KFEELNKKLQAIKI 157
           KFE+LN+KL  IK+
Sbjct: 535 KFEDLNRKLHMIKM 548

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606256|gb|EHJ64982.1| putative eukaryotic translation initiation factor 3 [Danaus plexippus]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 113/133 (84%), Gaps = 5/133 (3%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
           QVFMDEV QQKMLPTIRSYLKLYTTLPL+KLA FM  AR G     ERD  +E  +L  H
Sbjct: 465 QVFMDEVRQQKMLPTIRSYLKLYTTLPLAKLAAFMSAARGG-----ERDAVREHAALAIH 519

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LL FKHKMKNVVWT+GPSGL+G FQSGSELDF+IDN+MIHIADTKVAHRYGDFFIRK++K
Sbjct: 520 LLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFFIDNDMIHIADTKVAHRYGDFFIRKLLK 579

Query: 145 FEELNKKLQAIKI 157
           FEELN+KL  IKI
Sbjct: 580 FEELNRKLHHIKI 592

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608829|dbj|BAM18026.1| eukaryotic translation initiation factor 3 subunit L [Papilio xuthus]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 119/149 (79%), Gaps = 6/149 (4%)

Query: 10  VKPGLFYSH-FISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDS 68
           ++PG  YS   +    QVFMDEV QQKMLPTIRSYLKLYTTLPL+KLA FM  AR     
Sbjct: 399 IEPGSNYSRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPLAKLAAFMSAARGS--- 455

Query: 69  EIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADT 128
             +RD  +E  +L  HLL FKHKMKNVVWT+GPSGL+G FQSGSELDFYIDN+MIHIADT
Sbjct: 456 --DRDAAREHAALAIHLLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYIDNDMIHIADT 513

Query: 129 KVAHRYGDFFIRKIIKFEELNKKLQAIKI 157
           KVAHRYGDFFIRK++KFEELN+KL  IKI
Sbjct: 514 KVAHRYGDFFIRKLLKFEELNRKLHHIKI 542

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512711|gb|ADO33009.1| eukaryotic translation initiation factor 3 subunit L [Biston betularia]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 112/133 (84%), Gaps = 5/133 (3%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
           QVFMDEV QQKMLPTIRSYLKLYTTLPL+KLA FM  AR       ERD  +E  +L  H
Sbjct: 406 QVFMDEVRQQKMLPTIRSYLKLYTTLPLAKLAAFMSAARGS-----ERDATREHAALAIH 460

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LL FKHKMKNVVW++GPSGL+G FQSGSELDFYIDN+MIHIADTKVAHRYGDFFIRK++K
Sbjct: 461 LLCFKHKMKNVVWSKGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAHRYGDFFIRKLLK 520

Query: 145 FEELNKKLQAIKI 157
           FEELN+KL  IKI
Sbjct: 521 FEELNRKLHHIKI 533

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030226|gb|EGI70009.1| Eukaryotic translation initiation factor 3 subunit L [Acromyrmex echinatior]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 116/134 (86%), Gaps = 4/134 (2%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIE-RDVDKETKSLIT 83
           QVFMDEV QQKMLPTIRSYLKLYTTLPLSKLATFMGN      S+IE  D+DKE  +L  
Sbjct: 400 QVFMDEVIQQKMLPTIRSYLKLYTTLPLSKLATFMGN---NTRSDIEGWDLDKEVNALTI 456

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
           HLL FKHKMKN+VWT+G SGL+G FQSGSELDFYID++MIHIADTKVAHRYGDFFIRKI+
Sbjct: 457 HLLCFKHKMKNIVWTKGTSGLDGKFQSGSELDFYIDHDMIHIADTKVAHRYGDFFIRKIL 516

Query: 144 KFEELNKKLQAIKI 157
           KFEELN+KL  IKI
Sbjct: 517 KFEELNRKLHHIKI 530

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197884|gb|EFN78983.1| Eukaryotic translation initiation factor 3 subunit E-interacting protein [Harpegnathos saltator]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 116/134 (86%), Gaps = 5/134 (3%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG-NARAGQDSEIERDVDKETKSLIT 83
           QVFMDEV QQKMLPTIRSYLKLYTTLPLSKLATFMG N+R+ +      D+DKE  +L  
Sbjct: 406 QVFMDEVVQQKMLPTIRSYLKLYTTLPLSKLATFMGSNSRSDE----SWDLDKEVNALTI 461

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
           HLL FKHKMKN+VWT+G SGL+G FQSGSELDFYID++MIHIADTKVAHRYGDFFIRKI+
Sbjct: 462 HLLCFKHKMKNIVWTKGTSGLDGKFQSGSELDFYIDHDMIHIADTKVAHRYGDFFIRKIL 521

Query: 144 KFEELNKKLQAIKI 157
           KFEELN+KL  IKI
Sbjct: 522 KFEELNRKLHHIKI 535

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184430|gb|EFN70839.1| Eukaryotic translation initiation factor 3 subunit E-interacting protein [Camponotus floridanus]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 115/134 (85%), Gaps = 4/134 (2%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIE-RDVDKETKSLIT 83
           QVFMDEV QQKMLPTIRSYLKLYTTLPLSKLATFMGN      S+IE  D+ KE  +L  
Sbjct: 424 QVFMDEVVQQKMLPTIRSYLKLYTTLPLSKLATFMGN---NTRSDIEGWDLAKEVNALTI 480

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
           HLL FKHKMKN+VWT+G SGL+G FQSGSELDFYID++MIHIADTKVAHRYGDFFIRKI+
Sbjct: 481 HLLCFKHKMKNIVWTKGTSGLDGKFQSGSELDFYIDHDMIHIADTKVAHRYGDFFIRKIL 540

Query: 144 KFEELNKKLQAIKI 157
           KFEELN+KL  IKI
Sbjct: 541 KFEELNRKLHHIKI 554

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078690|ref|XP_971137.1| PREDICTED: similar to eukaryotic translation initiation factor 3 [Tribolium castaneum] gi|270003761|gb|EFA00209.1| hypothetical protein TcasGA2_TC003034 [Tribolium castaneum]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 116/132 (87%), Gaps = 3/132 (2%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
           QVFMDEV QQKMLPTIRSYLKLYTTLP++KLATFM   +   +SE + DVDKET++L+ H
Sbjct: 421 QVFMDEVQQQKMLPTIRSYLKLYTTLPIAKLATFMAQNK---NSEGKFDVDKETQNLLIH 477

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LL FKHKMKNVVW++G SGLEG  +SGSELDFYIDN+MIHIADTKVAHRYGDFFIRKI+K
Sbjct: 478 LLCFKHKMKNVVWSKGSSGLEGKLESGSELDFYIDNDMIHIADTKVAHRYGDFFIRKILK 537

Query: 145 FEELNKKLQAIK 156
           FE+LN+KL  +K
Sbjct: 538 FEDLNRKLHNLK 549

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66540009|ref|XP_624438.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Apis mellifera] gi|380028992|ref|XP_003698167.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Apis florea]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 114/134 (85%), Gaps = 5/134 (3%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFM-GNARAGQDSEIERDVDKETKSLIT 83
           QVFMDEV QQKMLPTIRSYLKLYTTLPLSKLATFM  N R  ++     D+DKE  +L  
Sbjct: 409 QVFMDEVVQQKMLPTIRSYLKLYTTLPLSKLATFMCSNTRPDEN----WDLDKEVSALTI 464

Query: 84  HLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKII 143
           HLL FKHKMKN+VWT+G SGL+G FQSGSELDFYID++MIHIADTKVAHRYGDFFIRKI+
Sbjct: 465 HLLCFKHKMKNIVWTKGASGLDGKFQSGSELDFYIDHDMIHIADTKVAHRYGDFFIRKIL 524

Query: 144 KFEELNKKLQAIKI 157
           KFEELN+KL  IKI
Sbjct: 525 KFEELNRKLHHIKI 538

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720774|ref|XP_003398805.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Bombus terrestris] gi|350398064|ref|XP_003485076.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Bombus impatiens]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 113/133 (84%), Gaps = 3/133 (2%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
           QVFMDEV QQKMLPTIRSYLKLYTTLPLSKLATFM +     +S    D+DKE  +L  H
Sbjct: 409 QVFMDEVVQQKMLPTIRSYLKLYTTLPLSKLATFMCSNTRPDES---WDLDKEVSALTIH 465

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LL FKHKMKN+VWT+G SGL+G FQSGSELDFYID++MIHIADTKVAHRYGDFFIRKI+K
Sbjct: 466 LLCFKHKMKNIVWTKGASGLDGKFQSGSELDFYIDHDMIHIADTKVAHRYGDFFIRKILK 525

Query: 145 FEELNKKLQAIKI 157
           FEELN+KL  IKI
Sbjct: 526 FEELNRKLHHIKI 538

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
FB|FBgn0036258	539	CG5642 [Drosophila melanogaste	0.783	0.228	0.684	4.5e-43
UNIPROTKB|Q8AVJ0	562	eif3l "Eukaryotic translation	0.815	0.227	0.562	3.1e-33
UNIPROTKB|Q6P878	562	eif3l "Eukaryotic translation	0.726	0.202	0.612	4e-33
UNIPROTKB|B0QY90	466	EIF3L "Eukaryotic translation	0.815	0.274	0.555	6.7e-33
ZFIN|ZDB-GENE-040426-2138	576	eif3s6ip "eukaryotic translati	0.770	0.210	0.568	1.4e-32
UNIPROTKB|Q5F428	564	EIF3L "Eukaryotic translation	0.815	0.226	0.555	1.5e-32
UNIPROTKB|Q3ZCK1	564	EIF3L "Eukaryotic translation	0.815	0.226	0.555	1.5e-32
UNIPROTKB|F1PHR6	564	EIF3L "Uncharacterized protein	0.815	0.226	0.555	1.5e-32
UNIPROTKB|Q9Y262	564	EIF3L "Eukaryotic translation	0.815	0.226	0.555	1.5e-32
UNIPROTKB|F1SKN5	564	EIF3L "Uncharacterized protein	0.815	0.226	0.555	1.5e-32

FB|FBgn0036258 CG5642 [Drosophila melanogaster (taxid:7227)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 91/133 (68%), Positives = 110/133 (82%)

Query:    25 QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
             QVFMDEV QQK LPT RSYLKLYTTLPL+KLA+F+ +  A +D     DV K    L+  
Sbjct:   417 QVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFI-DPNASED-----DVSK----LLIR 466

Query:    85 LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
             LL FKHKM+N+VW++GPSGLEGTF+SGSELDFYID++MIHIADTKV+HRYGDFF+RKI+K
Sbjct:   467 LLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILK 526

Query:   145 FEELNKKLQAIKI 157
             F +LN+KL+ I I
Sbjct:   527 FNDLNRKLKNINI 539

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|Q8AVJ0 eif3l "Eukaryotic translation initiation factor 3 subunit L" [Xenopus laevis (taxid:8355)]

 Score = 365 (133.5 bits), Expect = 3.1e-33, P = 3.1e-33
 Identities = 81/144 (56%), Positives = 97/144 (67%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      ++   + VF+DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   429 VNPNYHKEPYLQQLK-VFLDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLPE--QEFR 485

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S LEG FQS SE+DFYID +MIHIADTK
Sbjct:   486 IQ-------------LLVFKHKMKNLVWTSGISALEGEFQSASEVDFYIDKDMIHIADTK 532

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELNK L+
Sbjct:   533 VARRYGDFFIRQIHKFEELNKTLK 556

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q6P878 eif3l "Eukaryotic translation initiation factor 3 subunit L" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 364 (133.2 bits), Expect = 4.0e-33, P = 4.0e-33
 Identities = 79/129 (61%), Positives = 93/129 (72%)

Query:    25 QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
             +VF+DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  I+             
Sbjct:   443 KVFLDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLPE--QEFRIQ------------- 487

Query:    85 LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
             LL FKHKMKN+VWT G S LEG FQS SE+DFYID +MIHIADTKVA RYGDFFIR+I K
Sbjct:   488 LLVFKHKMKNLVWTSGISALEGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHK 547

Query:   145 FEELNKKLQ 153
             FEELNK L+
Sbjct:   548 FEELNKTLK 556

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|B0QY90 EIF3L "Eukaryotic translation initiation factor 3, subunit 6 interacting protein, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 80/144 (55%), Positives = 96/144 (66%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      F+   + VF DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   333 VHPNYHKEPFLQQLK-VFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTE--QEFR 389

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTK
Sbjct:   390 IQ-------------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTK 436

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELN+ L+
Sbjct:   437 VARRYGDFFIRQIHKFEELNRTLK 460

GO:0003743 "translation initiation factor activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2138 eif3s6ip "eukaryotic translation initiation factor 3, subunit 6 interacting protein" [Danio rerio (taxid:7955)]

 Score = 360 (131.8 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 79/139 (56%), Positives = 98/139 (70%)

Query:    22 PFRQ---VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKET 78
             PF+Q   VF +EV QQ  L TIRS+LKLYTT+P++KLA F+  +   Q+  I+       
Sbjct:   438 PFQQQLKVFAEEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDMSE--QEFRIQ------- 488

Query:    79 KSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFF 138
                   LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTKVA RYGDFF
Sbjct:   489 ------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFF 542

Query:   139 IRKIIKFEELNKKLQAIKI 157
             IR+I KFEELN+ L+ + +
Sbjct:   543 IRQIHKFEELNRTLKKMPL 561

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5F428 EIF3L "Eukaryotic translation initiation factor 3 subunit L" [Gallus gallus (taxid:9031)]

 Score = 359 (131.4 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 80/144 (55%), Positives = 96/144 (66%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      F+   + VF DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   431 VHPNYHKEPFLQQLK-VFADEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTE--QEFR 487

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTK
Sbjct:   488 IQ-------------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTK 534

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELN+ L+
Sbjct:   535 VARRYGDFFIRQIHKFEELNRTLK 558

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|Q3ZCK1 EIF3L "Eukaryotic translation initiation factor 3 subunit L" [Bos taurus (taxid:9913)]

 Score = 359 (131.4 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 80/144 (55%), Positives = 96/144 (66%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      F+   + VF DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   431 VHPNYHKEPFLQQLK-VFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTE--QEFR 487

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTK
Sbjct:   488 IQ-------------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTK 534

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELN+ L+
Sbjct:   535 VARRYGDFFIRQIHKFEELNRTLK 558

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

UNIPROTKB|F1PHR6 EIF3L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 80/144 (55%), Positives = 96/144 (66%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      F+   + VF DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   431 VHPNYHKEPFLQQLK-VFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTE--QEFR 487

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTK
Sbjct:   488 IQ-------------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTK 534

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELN+ L+
Sbjct:   535 VARRYGDFFIRQIHKFEELNRTLK 558

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

UNIPROTKB|Q9Y262 EIF3L "Eukaryotic translation initiation factor 3 subunit L" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 80/144 (55%), Positives = 96/144 (66%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      F+   + VF DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   431 VHPNYHKEPFLQQLK-VFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTE--QEFR 487

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTK
Sbjct:   488 IQ-------------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTK 534

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELN+ L+
Sbjct:   535 VARRYGDFFIRQIHKFEELNRTLK 558

GO:0001650 "fibrillar center" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0006413 "translational initiation" evidence=IC;IDA

UNIPROTKB|F1SKN5 EIF3L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 359 (131.4 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 80/144 (55%), Positives = 96/144 (66%)

Query:    10 VKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSE 69
             V P      F+   + VF DEV QQ  L TIRS+LKLYTT+P++KLA F+      Q+  
Sbjct:   431 VHPNYHKEPFLQQLK-VFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTE--QEFR 487

Query:    70 IERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTK 129
             I+             LL FKHKMKN+VWT G S L+G FQS SE+DFYID +MIHIADTK
Sbjct:   488 IQ-------------LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTK 534

Query:   130 VAHRYGDFFIRKIIKFEELNKKLQ 153
             VA RYGDFFIR+I KFEELN+ L+
Sbjct:   535 VARRYGDFFIRQIHKFEELNRTLK 558

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5F428	EIF3L_CHICK	No assigned EC number	0.5766	0.7579	0.2109	yes	N/A
A5A6M4	EIF3L_PANTR	No assigned EC number	0.5766	0.7579	0.2109	yes	N/A
Q7Q5Y8	EIF3L_ANOGA	No assigned EC number	0.7121	0.7898	0.2300	yes	N/A
Q9VTU4	EIF3L_DROME	No assigned EC number	0.6842	0.7834	0.2282	yes	N/A
Q2M0S3	EIF3L_DROPS	No assigned EC number	0.6641	0.7770	0.2255	yes	N/A
Q7T2A5	EIF3L_DANRE	No assigned EC number	0.5611	0.7707	0.2100	yes	N/A
Q8QZY1	EIF3L_MOUSE	No assigned EC number	0.5766	0.7579	0.2109	yes	N/A
Q3ZCK1	EIF3L_BOVIN	No assigned EC number	0.5766	0.7579	0.2109	yes	N/A
Q6P878	EIF3L_XENTR	No assigned EC number	0.5954	0.7388	0.2064	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
pfam10255	402	pfam10255, Paf67, RNA polymerase I-associated fact	9e-44

>gnl|CDD|220655 pfam10255, Paf67, RNA polymerase I-associated factor PAF67

 Score =  148 bits (375), Expect = 9e-44
 Identities = 61/122 (50%), Positives = 79/122 (64%), Gaps = 15/122 (12%)

Query: 25  QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITH 84
           Q+F+ EV QQ+ +  +RSYLKLYTT+ L KLA+ +             DVD E   L + 
Sbjct: 296 QLFLKEVKQQQDINKLRSYLKLYTTITLEKLASLL-------------DVDDEE--LRSQ 340

Query: 85  LLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIK 144
           LLA+KHK + + W+ G S L G F S S+LDFYID +MIHI +TKV  RYGDFFIR+I K
Sbjct: 341 LLAYKHKSRQLEWSSGASLLSGEFVSSSDLDFYIDGDMIHIKETKVQKRYGDFFIRQINK 400

Query: 145 FE 146
            +
Sbjct: 401 CK 402

RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans. Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	100.0
KOG3677|consensus	525		100.0
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	89.29
smart00753	88	PAM PCI/PINT associated module.	87.52
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	87.52
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	84.81

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=100.00  E-value=4e-50  Score=356.74  Aligned_cols=128  Identities=56%  Similarity=0.941  Sum_probs=122.9

Q ss_pred             cccccccc-CCCCCC----CCchHHH---HHHHHHHHhhhhchhhHhHHhhhccCChHHHHHHhhccccCCCcccccccc
Q psy16395          4 LNKLIVVK-PGLFYS----HFISPFR---QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVD   75 (157)
Q Consensus         4 ~~~fi~~~-~~~f~n----~~~ep~~---~~Fl~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv~~~~~~~~~~~~~~   75 (157)
                      -||||||+ ||.+.+    .+.||++   ++||+||++|+.+|+|||||||||||+++|||+||++              
T Consensus       268 cPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~v--------------  333 (404)
T PF10255_consen  268 CPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDV--------------  333 (404)
T ss_pred             CCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCC--------------
Confidence            49999999 888777    3448999   9999999999999999999999999999999999999              


Q ss_pred             CChHHHHHHHHHhhhcceee-eecCCCCCCCcceeeccceeEEEeCCeEEEeeccchhhhhhHHHHHHHHHH
Q psy16395         76 KETKSLITHLLAFKHKMKNV-VWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFE  146 (157)
Q Consensus        76 ~d~e~lr~~Ll~~K~k~rql-~w~~G~~~l~Ge~~~~sDlDFyID~DmIhIaetk~~rrygd~Fir~I~K~e  146 (157)
                       |+++||++|||+|||+||+ +|++|+++++|++++++|+|||||+|||||+|+|++|||||||+|||+|||
T Consensus       334 -d~~~lr~~Ll~~K~k~~ql~~w~~g~sll~G~~~~~~dlDf~Id~D~IhI~e~k~~r~~~d~F~r~i~k~e  404 (404)
T PF10255_consen  334 -DEEELRSQLLCFKHKSRQLVRWSGGASLLDGEFQSSSDLDFYIDGDMIHIAETKVARRYGDFFIRQINKFE  404 (404)
T ss_pred             -CHHHHHHHHHHHHHHHHHHhhccCCCcccccceeecCceEEEEeCCEEEEeeccccchhHHHHHHHHHhcC
Confidence             9999999999999999999 999999999999999999999999999999999999999999999999985

>KOG3677|consensus

Probab=100.00  E-value=1.4e-43  Score=317.38  Aligned_cols=142  Identities=58%  Similarity=0.889  Sum_probs=132.5

Q ss_pred             cccccccccCCCCCC----CCchHHH---HHHHHHHHhhhhchhhHhHHhhhccCChHHHHHHhhccccCCCcccccccc
Q psy16395          3 LLNKLIVVKPGLFYS----HFISPFR---QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVD   75 (157)
Q Consensus         3 ~~~~fi~~~~~~f~n----~~~ep~~---~~Fl~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv~~~~~~~~~~~~~~   75 (157)
                      +-|||.||++|..++    +..||+.   ++||+||.||..+|++|||||||||+|++|||+|||+...           
T Consensus       375 ~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsylklyTt~P~kkla~F~D~~d~-----------  443 (525)
T KOG3677|consen  375 LCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKLYTTLPVKKLASFLDLTDQ-----------  443 (525)
T ss_pred             cCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHHHHHHHhccHHHhhhccCCchh-----------
Confidence            458999999999887    6789998   8999999999999999999999999999999999999211           


Q ss_pred             CChHHHHHHHHHhhhcceeeeecCCCCCCCcceeeccceeEEEeCCeEEEeeccchhhhhhHHHHHHHHHHHHHHHHhhc
Q psy16395         76 KETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAI  155 (157)
Q Consensus        76 ~d~e~lr~~Ll~~K~k~rql~w~~G~~~l~Ge~~~~sDlDFyID~DmIhIaetk~~rrygd~Fir~I~K~e~l~~~L~~~  155 (157)
                       ..+.++.+|+|||||++|++|+.|++.++|++.+++++|||||.|||||+|||++|||||+|||+|+||+|++|.|+.+
T Consensus       444 -~~dk~li~Ll~~khkm~nlv~~sg~s~~d~~f~~~s~idfyid~dmi~iaDtkv~r~~gd~fir~i~kf~El~~vLK~i  522 (525)
T KOG3677|consen  444 -ERDKFLIQLLVFKHKMKNLVWTSGPSDLDDAFFSRSEIDFYIDKDMIHIADTKVARRYGDIFIRQIHKFEELNRVLKLI  522 (525)
T ss_pred             -hhhhhHHHHHHHHHHHHHHHHhcCCccccccccCcceeeEEechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             2335999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q psy16395        156 K  156 (157)
Q Consensus       156 ~  156 (157)
                      .
T Consensus       523 ~  523 (525)
T KOG3677|consen  523 T  523 (525)
T ss_pred             c
Confidence            4

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=89.29  E-value=0.76  Score=31.69  Aligned_cols=48  Identities=13%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             HHHHHHHhhhhchhhHhHHhhhccCChHHHHHHhhccccCCCccccccccCChHHHHHHHHHh
Q psy16395         26 VFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAF   88 (157)
Q Consensus        26 ~Fl~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv~~~~~~~~~~~~~~~d~e~lr~~Ll~~   88 (157)
                      .-.+.+......-.|++|.+-|++++++.+|..+++               +++++...|+.+
T Consensus        37 ~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~---------------~~~~vE~~l~~~   84 (105)
T PF01399_consen   37 EYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQL---------------SEEEVESILIDL   84 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTC---------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhcc---------------chHHHHHHHHHH
Confidence            344667777777889999999999999999999999               777777777655

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>smart00753 PAM PCI/PINT associated module

Probab=87.52  E-value=1.4  Score=30.25  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             HHHHhhhhchhhHhHHhhhccCChHHHHHHhhc
Q psy16395         29 DEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGN   61 (157)
Q Consensus        29 ~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv   61 (157)
                      +.+......-.|++|.+-|++++++.||..+++
T Consensus         4 ~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l   36 (88)
T smart00753        4 ERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGL   36 (88)
T ss_pred             HHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCc
Confidence            445566667789999999999999999999999

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=87.52  E-value=1.4  Score=30.25  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             HHHHhhhhchhhHhHHhhhccCChHHHHHHhhc
Q psy16395         29 DEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGN   61 (157)
Q Consensus        29 ~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv   61 (157)
                      +.+......-.|++|.+-|++++++.||..+++
T Consensus         4 ~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l   36 (88)
T smart00088        4 ERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGL   36 (88)
T ss_pred             HHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCc
Confidence            445566667789999999999999999999999

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=84.81  E-value=1.4  Score=29.75  Aligned_cols=45  Identities=27%  Similarity=0.278  Sum_probs=36.5

Q ss_pred             hchhhHhHHhhhccCChHHHHHHhhccccCCCccccccccCChHHHHHHHHHhhhcceee
Q psy16395         36 MLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAFKHKMKNV   95 (157)
Q Consensus        36 ~lp~iRSYLKLYtti~l~KLAsfmdv~~~~~~~~~~~~~~~d~e~lr~~Ll~~K~k~rql   95 (157)
                      +|-.||.|++.-.+++++-||.-+++               +++.++..|-...++++--
T Consensus         1 ~L~~i~~~l~~~~~~S~~eLa~~~~~---------------s~~~ve~mL~~l~~kG~I~   45 (69)
T PF09012_consen    1 MLQEIRDYLRERGRVSLAELAREFGI---------------SPEAVEAMLEQLIRKGYIR   45 (69)
T ss_dssp             -CHHHHHHHHHS-SEEHHHHHHHTT-----------------HHHHHHHHHHHHCCTSCE
T ss_pred             CHHHHHHHHHHcCCcCHHHHHHHHCc---------------CHHHHHHHHHHHHHCCcEE
Confidence            35689999999999999999999999               9999999998888876543

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
1ufm_A	84	COP9 complex subunit 4; helix-turn-helix, structur	93.91
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.04
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	83.62
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	83.5

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47

Probab=93.91  E-value=0.039  Score=38.61  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             hhHhHHhhhccCChHHHHHHhhc
Q psy16395         39 TIRSYLKLYTTLPLSKLATFMGN   61 (157)
Q Consensus        39 ~iRSYLKLYtti~l~KLAsfmdv   61 (157)
                      .||.|.|.|++|+++.||..+++
T Consensus        20 nl~~is~~Y~~Isl~~La~ll~l   42 (84)
T 1ufm_A           20 NLLSASKLYNNITFEELGALLEI   42 (84)
T ss_dssp             HHHHHHHSCSEEEHHHHHHHTTS
T ss_pred             HHHHHHHhcCeeeHHHHHHHHCc
Confidence            46789999999999999999999

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.04  E-value=0.15  Score=43.86  Aligned_cols=87  Identities=22%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhhhchhhHhHHhhhccCChHHHHHHhhccccCCCccccccccCChHHHHHHHHHhhhcceeeeecCCCCCC
Q psy16395         25 QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGL  104 (157)
Q Consensus        25 ~~Fl~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv~~~~~~~~~~~~~~~d~e~lr~~Ll~~K~k~rql~w~~G~~~l  104 (157)
                      ..|.++|..    -.++.|++.|++++++.||..+++               +++.+-..|..+=               
T Consensus       327 ~~l~~~ir~----~~l~q~~~~Ys~I~l~~mA~~l~~---------------s~~~~E~~L~~lI---------------  372 (429)
T 4b4t_R          327 DFFVREMRR----KVYAQLLESYKTLSLKSMASAFGV---------------SVAFLDNDLGKFI---------------  372 (429)
T ss_dssp             HHHHHHHHH----HHHHHHHHTCSEEEHHHHHHHHTS---------------CHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHH----HHHHHHhHHhceeeHHHHHHHhCc---------------CHHHHHHHHHHHH---------------
Confidence            344444443    457899999999999999999999               6776666655441               


Q ss_pred             CcceeeccceeEEEeC--CeEEEeeccc-hhh------hhhHHHHHHHHHHHHHH
Q psy16395        105 EGTFQSGSELDFYIDN--EMIHIADTKV-AHR------YGDFFIRKIIKFEELNK  150 (157)
Q Consensus       105 ~Ge~~~~sDlDFyID~--DmIhIaetk~-~rr------ygd~Fir~I~K~e~l~~  150 (157)
                           ..+.++.-||.  .+|+...... ...      -||-++..|+|+..+++
T Consensus       373 -----~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~  422 (429)
T 4b4t_R          373 -----PNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR  422 (429)
T ss_dssp             -----HHTSSCEEEETTTTEEEECC------------------------------
T ss_pred             -----HcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 11223555653  5676654322 123      36667777887766654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.62  E-value=3  Score=35.98  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=26.6

Q ss_pred             HHHHHHHHhhhhchhhHhHHhhhccCChHHHHHHhhc
Q psy16395         25 QVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGN   61 (157)
Q Consensus        25 ~~Fl~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv   61 (157)
                      ..+...|..    -.||.+.|.|++|+++.||.++++
T Consensus       339 ~~L~~~v~e----hnl~~i~k~Ys~I~l~~la~lL~l  371 (445)
T 4b4t_P          339 EDLQKRVIE----HNLRVISEYYSRITLLRLNELLDL  371 (445)
T ss_dssp             HHHHHHHHH----HHHHHHHHHEEEEEHHHHHHHHTS
T ss_pred             HHHHHHHHH----HHHHHHHHHhceeeHHHHHHHhCc
Confidence            444444444    458999999999999999999999

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=83.50  E-value=2.8  Score=36.46  Aligned_cols=41  Identities=7%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHhhhhchhhHhHHhhhccCChHHHHHHhhc
Q psy16395         21 SPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGN   61 (157)
Q Consensus        21 ep~~~~Fl~eV~~Q~~lp~iRSYLKLYtti~l~KLAsfmdv   61 (157)
                      ||+-+.....+.+....-.|+.|++-|++|+++.+|..+++
T Consensus       288 D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l  328 (394)
T 3txn_A          288 DVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQL  328 (394)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCc
Confidence            55544445666677777888999999999999999999999

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1ufma_	84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	93.21

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.028  Score=37.63  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             hhhHhHHhhhccCChHHHHHHhhc
Q psy16395         38 PTIRSYLKLYTTLPLSKLATFMGN   61 (157)
Q Consensus        38 p~iRSYLKLYtti~l~KLAsfmdv   61 (157)
                      -.|+.|-|.|++|+++.||..+++
T Consensus        19 hni~~is~~Y~~Isl~~la~~l~l   42 (84)
T d1ufma_          19 HNLLSASKLYNNITFEELGALLEI   42 (84)
T ss_dssp             HHHHHHHHSCSEEEHHHHHHHTTS
T ss_pred             HHHHHHHHhhceeeHHHHHHHHCC
Confidence            368899999999999999999999