Psyllid ID: psy16493

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MPFVFVDFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRKGT
Secondary Structure (PSIPRED)
ccccccccccccHHHHccccccccccccHHHccccccccccccHHHHHHHHHHcccccccHHHHHHccccHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccccccccccccccccEEEccccccHHHHHHEEccccccccHHHHHEHccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mpfvfvdfpeEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKllgtlrppgliggskpkvatpAVVSKIEqykrenptiFAWEIRERLIsedvgvnglalqtpprnaieEIKYSTLRKGT
Flexible Loop (DISEMBL)
MPFVFVDFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGliggskpkvatpavvskieqykrenptiFAWEIRERLISEDVGVnglalqtpprnaieeikystlrkgt
Low Complexity Region (SEG)
MPFVFVDFPEEQYWILRHLTLFNKLIGSLRElyalaasqqplaslVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRKGT
Disordered region (IsUnstruct)
**FVFVDFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQ*******************
Disordered Region (DISOPRED)
*******FPEEQYWIL****************YALAASQQPLASLVNQ*********D*****LHQ****V*********************TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEE***S******
Disordered Region (DISEMBL)
MPFVFVDFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRKGT
Disordered Region (DISPRO)
MPFVFVDFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYST*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPFVFVDFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRKGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
P47240	459	Paired box protein Pax-8	no	N/A	0.655	0.215	0.477	8e-17
P51974	457	Paired box protein Pax-8	yes	N/A	0.655	0.216	0.477	8e-17
Q00288	457	Paired box protein Pax-8	yes	N/A	0.655	0.216	0.477	9e-17
Q06710	450	Paired box protein Pax-8	no	N/A	0.655	0.22	0.477	9e-17
Q02650	391	Paired box protein Pax-5	no	N/A	0.814	0.314	0.378	1e-16
Q5R9M8	457	Paired box protein Pax-8	no	N/A	0.655	0.216	0.473	1e-16
Q02548	391	Paired box protein Pax-5	no	N/A	0.814	0.314	0.378	1e-16
Q02962	417	Paired box protein Pax-2	no	N/A	0.662	0.239	0.454	1e-16
P32114	414	Paired box protein Pax-2	no	N/A	0.662	0.241	0.454	1e-16
Q90268	410	Paired box protein Pax-2a	no	N/A	0.655	0.241	0.459	1e-16

>sp|P47240|PAX8_CANFA Paired box protein Pax-8 OS=Canis familiaris GN=PAX8 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 12/111 (10%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G L +L     + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 11  GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 69

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
           ++RP G+IGGSKPKVATP VV KI  YKR+NPT+FAWEIR+RL++E V  N
Sbjct: 70  SIRP-GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 119

Thought to encode a transcription factor. It may have a role in kidney cell differentiation. May play a regulatory role in mammalian development.
Canis familiaris (taxid: 9615)

>sp|P51974|PAX8_RAT Paired box protein Pax-8 OS=Rattus norvegicus GN=Pax8 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 12/111 (10%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G L +L     + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 11  GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 69

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
           ++RP G+IGGSKPKVATP VV KI  YKR+NPT+FAWEIR+RL++E V  N
Sbjct: 70  SIRP-GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 119

Thought to encode a transcription factor. It may have a role in kidney cell differentiation. May play a regulatory role in mammalian development.

Rattus norvegicus (taxid: 10116)

>sp|Q00288|PAX8_MOUSE Paired box protein Pax-8 OS=Mus musculus GN=Pax8 PE=2 SV=3

 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 12/111 (10%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G L +L     + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 11  GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 69

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
           ++RP G+IGGSKPKVATP VV KI  YKR+NPT+FAWEIR+RL++E V  N
Sbjct: 70  SIRP-GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 119

Thought to encode a transcription factor. It may have a role in kidney cell differentiation. May play a regulatory role in mammalian development.

Mus musculus (taxid: 10090)

>sp|Q06710|PAX8_HUMAN Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 12/111 (10%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G L +L     + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 11  GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 69

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
           ++RP G+IGGSKPKVATP VV KI  YKR+NPT+FAWEIR+RL++E V  N
Sbjct: 70  SIRP-GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 119

Transcription factor for the thyroid-specific expression of the genes exclusively expressed in the thyroid cell type, maintaining the functional differentiation of such cells.

Homo sapiens (taxid: 9606)

>sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus GN=Pax5 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 25/148 (16%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G + +L  +  + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 18  GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 76

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA------ 130
           +++P G+IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E V  N         
Sbjct: 77  SIKP-GVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135

Query: 131 -------LQTPPRNAIEEIKYSTLRKGT 151
                  +Q PP   +    +S +  G+
Sbjct: 136 NRIIRTKVQQPPNQPVPASSHSIVSTGS 163

May play an important role in B-cell differentiation as well as neural development and spermatogenesis. Involved in the regulation of the CD19 gene, a B-lymphoid-specific target gene.

Mus musculus (taxid: 10090)

>sp|Q5R9M8|PAX8_PONAB Paired box protein Pax-8 OS=Pongo abelii GN=PAX8 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 69/112 (61%), Gaps = 13/112 (11%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLGT----- 77
           G L +L     + +PL  +V Q+   L     R  DI++  L    G VSK+LG+     
Sbjct: 11  GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQ-LRVSHGCVSKILGSRYYET 69

Query: 78  --LRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
             +RP G+IGGSKPKVATP VV KI  YKR+NPT+FAWEIR+RL++E V  N
Sbjct: 70  GSIRP-GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDN 120

Thought to encode a transcription factor. It may have a role in kidney cell differentiation. May play a regulatory role in mammalian development.

Pongo abelii (taxid: 9601)

>sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 OS=Homo sapiens GN=PAX5 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 25/148 (16%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G + +L  +  + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 18  GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 76

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA------ 130
           +++P G+IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E V  N         
Sbjct: 77  SIKP-GVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135

Query: 131 -------LQTPPRNAIEEIKYSTLRKGT 151
                  +Q PP   +    +S +  G+
Sbjct: 136 NRIIRTKVQQPPNQPVPASSHSIVSTGS 163

May play an important role in B-cell differentiation as well as neural development and spermatogenesis. Involved in the regulation of the CD19 gene, a B-lymphoid-specific target gene.

Homo sapiens (taxid: 9606)

>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens GN=PAX2 PE=1 SV=4

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 10/110 (9%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLGTLR--- 79
           G + +L  +  + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 18  GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 76

Query: 80  --PPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
              PG+IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E +  N
Sbjct: 77  SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126

Probable transcription factor that may have a role in kidney cell differentiation. Has a critical role in the development of the urogenital tract, the eyes, and the CNS.

Homo sapiens (taxid: 9606)

>sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus GN=Pax2 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 10/110 (9%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLGTLR--- 79
           G + +L  +  + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 17  GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 75

Query: 80  --PPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
              PG+IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E +  N
Sbjct: 76  SIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 125

Probable transcription factor that may have a role in kidney cell differentiation.

Mus musculus (taxid: 10090)

>sp|Q90268|PAX2A_DANRE Paired box protein Pax-2a OS=Danio rerio GN=pax2a PE=2 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 12/111 (10%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL----FRHYDIAQHVLHQQQGAVSKLLG------ 76
           G + +L  +  + +PL  +V Q+   L     R  DI++  L    G VSK+LG      
Sbjct: 21  GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQ-LRVSHGCVSKILGRYYETG 79

Query: 77  TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN 127
           +++P G+IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E V  N
Sbjct: 80  SIKP-GVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDN 129

Probable transcription factor involved in the development of the midbrain/hindbrain boundary (MHB) organizer and specification of neuronal cell fates. Required for establishment of eng2 and eng3 gene expression in the midbrain and MHB primordium during late gastrulation.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
167234388	506	eyegone [Tribolium castaneum]	0.675	0.201	0.745	2e-35
270006363	572	eyegone [Tribolium castaneum]	0.675	0.178	0.745	2e-35
357615710	491	hypothetical protein KGM_15291 [Danaus p	0.668	0.205	0.724	2e-33
242017688	535	Paired box protein Pax-6, putative [Pedi	0.728	0.205	0.637	2e-33
328718969	691	PREDICTED: hypothetical protein LOC10016	0.708	0.154	0.672	1e-30
158297703	603	AGAP011417-PA [Anopheles gambiae str. PE	0.582	0.145	0.765	3e-30
195376715	594	GJ13266 [Drosophila virilis] gi|19415429	0.635	0.161	0.696	4e-30
195126164	593	GI12329 [Drosophila mojavensis] gi|19391	0.649	0.165	0.682	4e-30
195439912	605	GK12629 [Drosophila willistoni] gi|19416	0.708	0.176	0.654	1e-29
194747105	670	GF24979 [Drosophila ananassae] gi|190623	0.615	0.138	0.72	1e-29

>gi|167234388|ref|NP_001107817.1| eyegone [Tribolium castaneum]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 89/110 (80%), Gaps = 8/110 (7%)

Query: 28  SLRELYALAASQ--QPLASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRP 80
           +LRELY  AA+    PLASLV+QQ+     R   RHYD+AQH+L  QQGAV+KLLGTLRP
Sbjct: 94  ALRELYGNAATAPGHPLASLVSQQRFLELSRFGLRHYDLAQHML-TQQGAVTKLLGTLRP 152

Query: 81  PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 153 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 202

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006363|gb|EFA02811.1| eyegone [Tribolium castaneum]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 89/110 (80%), Gaps = 8/110 (7%)

Query: 28  SLRELYALAASQ--QPLASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRP 80
           +LRELY  AA+    PLASLV+QQ+     R   RHYD+AQH+L  QQGAV+KLLGTLRP
Sbjct: 160 ALRELYGNAATAPGHPLASLVSQQRFLELSRFGLRHYDLAQHML-TQQGAVTKLLGTLRP 218

Query: 81  PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 219 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 268

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357615710|gb|EHJ69793.1| hypothetical protein KGM_15291 [Danaus plexippus]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 85/109 (77%), Gaps = 8/109 (7%)

Query: 27  GSLRELYALAASQQPLASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPP 81
           G    LYA A+   PL+SL++QQ+     R   RHYDIA HVL  QQGAV+KLLGTLRPP
Sbjct: 50  GGTNTLYAGAS--HPLSSLLSQQRLLELSRFGLRHYDIAHHVL-SQQGAVTKLLGTLRPP 106

Query: 82  GLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           GLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 107 GLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 155

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017688|ref|XP_002429319.1| Paired box protein Pax-6, putative [Pediculus humanus corporis] gi|212514222|gb|EEB16581.1| Paired box protein Pax-6, putative [Pediculus humanus corporis]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 89/127 (70%), Gaps = 17/127 (13%)

Query: 20  TLFNKLIGSLRELYALA---------ASQQPLASLVNQQQRLL-------FRHYDIAQHV 63
            + N    SLR+LY            +   PLA+L +QQQRLL        RHYD+AQH+
Sbjct: 25  NVLNAPSTSLRDLYVSTLGAPPLTSISPGHPLANLASQQQRLLELSRFGLGRHYDLAQHM 84

Query: 64  LHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISED 123
           L  QQGAV+K LGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 
Sbjct: 85  L-TQQGAVTKFLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEG 143

Query: 124 VGVNGLA 130
           V  N  A
Sbjct: 144 VCTNATA 150

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718969|ref|XP_001942532.2| PREDICTED: hypothetical protein LOC100165522 [Acyrthosiphon pisum]

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/119 (67%), Positives = 87/119 (73%), Gaps = 12/119 (10%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLL-----FRHY-DIAQHVLHQQQGAVSKLLGTLRP 80
            +LRELYA+AASQQ       Q  RLL     +R Y +IA HV +QQ GAV+KLLGTLRP
Sbjct: 83  ATLRELYAMAASQQH-----QQHSRLLELSNRYRGYPEIAHHVFNQQ-GAVTKLLGTLRP 136

Query: 81  PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAI 139
           PGLIGGSKPKVATPAVVSKIE YKRENPTIFAWEIRE+LISE V  NG A      N I
Sbjct: 137 PGLIGGSKPKVATPAVVSKIEFYKRENPTIFAWEIREKLISEGVCTNGTAPSVSSINRI 195

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297703|ref|XP_317892.4| AGAP011417-PA [Anopheles gambiae str. PEST] gi|157014704|gb|EAA12932.5| AGAP011417-PA [Anopheles gambiae str. PEST]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 76/94 (80%), Gaps = 6/94 (6%)

Query: 42  LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAV 96
           LA LV+Q +     R   R YD+AQH+L  QQGAVSKLLGTLRPPGLIGGSKPKVATPAV
Sbjct: 65  LAGLVSQHRLLELSRFGLRGYDLAQHML-TQQGAVSKLLGTLRPPGLIGGSKPKVATPAV 123

Query: 97  VSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           VSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 124 VSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 157

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376715|ref|XP_002047138.1| GJ13266 [Drosophila virilis] gi|194154296|gb|EDW69480.1| GJ13266 [Drosophila virilis]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 78/102 (76%), Gaps = 6/102 (5%)

Query: 34  ALAASQQPLASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSK 88
           A  A+   L++L +Q +     R   R YD+AQH+L  QQGAVSKLLGTLRPPGLIGGSK
Sbjct: 128 ATTAAATNLSALASQHRLLELSRFGLRGYDLAQHML-SQQGAVSKLLGTLRPPGLIGGSK 186

Query: 89  PKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           PKVATP VVSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 187 PKVATPTVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 228

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126164|ref|XP_002007544.1| GI12329 [Drosophila mojavensis] gi|193919153|gb|EDW18020.1| GI12329 [Drosophila mojavensis]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 80/107 (74%), Gaps = 9/107 (8%)

Query: 32  LYALAASQQP---LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGL 83
           L+  A S  P   L++L +Q +     R   R YD+AQH+L  QQGAVSKLLGTLRPPGL
Sbjct: 120 LFGNAGSSPPGTNLSALASQHRLLELSRFGLRGYDLAQHML-SQQGAVSKLLGTLRPPGL 178

Query: 84  IGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           IGGSKPKVATP VVSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 179 IGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 225

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439912|ref|XP_002067803.1| GK12629 [Drosophila willistoni] gi|194163888|gb|EDW78789.1| GK12629 [Drosophila willistoni]

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/113 (65%), Positives = 82/113 (72%), Gaps = 6/113 (5%)

Query: 27  GSLRELYALAASQQPLASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG 86
           G+   L ALA+  + L     +  R   R YD+AQH+L  QQGAVSKLLGTLRPPGLIGG
Sbjct: 87  GAATNLSALASQHRLL-----ELSRFGLRGYDLAQHML-SQQGAVSKLLGTLRPPGLIGG 140

Query: 87  SKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAI 139
           SKPKVATPAVVSKIEQYKRENPTIFAWEIRERLI+E+V  N  A      N I
Sbjct: 141 SKPKVATPAVVSKIEQYKRENPTIFAWEIRERLITEEVCTNATAPSVSSINRI 193

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747105|ref|XP_001955993.1| GF24979 [Drosophila ananassae] gi|190623275|gb|EDV38799.1| GF24979 [Drosophila ananassae]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 78/100 (78%), Gaps = 7/100 (7%)

Query: 37  ASQQPLASLVNQQQRLLF------RHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPK 90
           A+   L SL++Q + L F      R YDIAQH+L  QQGAVSKLLG+LRPPGLIGGSKPK
Sbjct: 104 AAGSTLNSLMSQHRLLEFSRFGGLRGYDIAQHML-TQQGAVSKLLGSLRPPGLIGGSKPK 162

Query: 91  VATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLA 130
           VATP VVSKIEQYKRENPTIFAWEIRERLISE V  N  A
Sbjct: 163 VATPTVVSKIEQYKRENPTIFAWEIRERLISEGVCTNATA 202

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
FB|FBgn0036285	640	toe "twin of eyg" [Drosophila	0.582	0.137	0.752	9.2e-28
FB|FBgn0000625	675	eyg "eyegone" [Drosophila mela	0.556	0.124	0.788	1.4e-27
UNIPROTKB|F1NXF7	186	PAX6 "Paired box protein Pax-6	0.609	0.494	0.495	3.7e-16
UNIPROTKB|F1M5I1	305	Pax6 "Paired box protein Pax-6	0.503	0.249	0.558	6.3e-16
UNIPROTKB|F1MWQ4	261	PAX5 "Uncharacterized protein"	0.456	0.264	0.573	9.8e-16
UNIPROTKB|J9P1P0	288	PAX5 "Uncharacterized protein"	0.456	0.239	0.573	9.8e-16
UNIPROTKB|E7ERW5	295	PAX5 "Paired box protein Pax-5	0.456	0.233	0.573	9.8e-16
UNIPROTKB|Q5SZP1	214	PAX2 "Paired box protein Pax-2	0.456	0.322	0.56	9.8e-16
UNIPROTKB|F1ST83	260	PAX5 "Uncharacterized protein"	0.456	0.265	0.573	9.8e-16
UNIPROTKB|G3V5S4	303	PAX2 "Paired box protein Pax-2	0.456	0.227	0.56	1e-15

FB|FBgn0036285 toe "twin of eyg" [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 9.2e-28, P = 9.2e-28
 Identities = 67/89 (75%), Positives = 70/89 (78%)

Query:    51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTI 110
             R   R YD+AQH+L  QQGAVSKLLGTLRPPGLIGGSKPKVATP VVSKIEQYKRENPTI
Sbjct:   141 RFGLRGYDLAQHML-SQQGAVSKLLGTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTI 199

Query:   111 FAWEIRERLISEDVGVNGLALQTPPRNAI 139
             FAWEIRERLI+E V  N  A      N I
Sbjct:   200 FAWEIRERLITEGVCTNATAPSVSSINRI 228

GO:0005667 "transcription factor complex" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

FB|FBgn0000625 eyg "eyegone" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 67/85 (78%), Positives = 69/85 (81%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWE 114
             R YDIAQH+L  QQGAVSKLLG+LRPPGLIGGSKPKVATP VVSKIEQYKRENPTIFAWE
Sbjct:   137 RGYDIAQHML-TQQGAVSKLLGSLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWE 195

Query:   115 IRERLISEDVGVNGLALQTPPRNAI 139
             IRERLISE V  N  A      N I
Sbjct:   196 IRERLISEGVCTNATAPSVSSINRI 220

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005667 "transcription factor complex" evidence=ISS

GO:0007435 "salivary gland morphogenesis" evidence=TAS

GO:0001654 "eye development" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007477 "notum development" evidence=IMP

GO:0007469 "antennal development" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0035214 "eye-antennal disc development" evidence=IMP

UNIPROTKB|F1NXF7 PAX6 "Paired box protein Pax-6" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 51/103 (49%), Positives = 64/103 (62%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLG------TLRPPGLIGGSKPKVATPAVVSKIEQYKRENP 108
             R  DI++ +L    G VSK+LG      ++RP   IGGSKP+VATP VVSKI QYKRE P
Sbjct:    34 RPCDISR-ILQVSNGCVSKILGRYYETGSIRPRA-IGGSKPRVATPEVVSKIAQYKRECP 91

Query:   109 TIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRKGT 151
             +IFAWEIR+RL+SE V  N      P  ++I  +K    R  T
Sbjct:    92 SIFAWEIRDRLLSEGVCTND---NIPSVSSINRLKRKLQRNRT 131

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1M5I1 Pax6 "Paired box protein Pax-6" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 48/86 (55%), Positives = 57/86 (66%)

Query:    51 RLLFRHYDIAQHVLHQQQ---GAVSKLLG------TLRPPGLIGGSKPKVATPAVVSKIE 101
             R+L  H D    VL  +    G VSK+LG      ++RP   IGGSKP+VATP VVSKI 
Sbjct:    95 RILQTHADAKVQVLDSENVSNGCVSKILGRYYETGSIRPRA-IGGSKPRVATPEVVSKIA 153

Query:   102 QYKRENPTIFAWEIRERLISEDVGVN 127
             QYKRE P+IFAWEIR+RL+SE V  N
Sbjct:   154 QYKRECPSIFAWEIRDRLLSEGVCTN 179

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1MWQ4 PAX5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKIEQYKRENPT 109
             R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct:    51 RPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPT 109

Query:   110 IFAWEIRERLISEDV 124
             +FAWEIR+RL++E V
Sbjct:   110 MFAWEIRDRLLAERV 124

GO:0005634 "nucleus" evidence=IEA

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|J9P1P0 PAX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKIEQYKRENPT 109
             R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct:    50 RPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPT 108

Query:   110 IFAWEIRERLISEDV 124
             +FAWEIR+RL++E V
Sbjct:   109 MFAWEIRDRLLAERV 123

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E7ERW5 PAX5 "Paired box protein Pax-5" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKIEQYKRENPT 109
             R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct:    50 RPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPT 108

Query:   110 IFAWEIRERLISEDV 124
             +FAWEIR+RL++E V
Sbjct:   109 MFAWEIRDRLLAERV 123

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5SZP1 PAX2 "Paired box protein Pax-2" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKIEQYKRENPT 109
             R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct:    50 RPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPT 108

Query:   110 IFAWEIRERLISEDV 124
             +FAWEIR+RL++E +
Sbjct:   109 MFAWEIRDRLLAEGI 123

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IEA

GO:0003337 "mesenchymal to epithelial transition involved in metanephros morphogenesis" evidence=IEA

GO:0003406 "retinal pigment epithelium development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0007501 "mesodermal cell fate specification" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0010001 "glial cell differentiation" evidence=IEA

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=IEA

GO:0021633 "optic nerve structural organization" evidence=IEA

GO:0021650 "vestibulocochlear nerve formation" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0031667 "response to nutrient levels" evidence=IEA

GO:0032993 "protein-DNA complex" evidence=IEA

GO:0035566 "regulation of metanephros size" evidence=IEA

GO:0035799 "ureter maturation" evidence=IEA

GO:0039003 "pronephric field specification" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043491 "protein kinase B signaling cascade" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0048863 "stem cell differentiation" evidence=IEA

GO:0061205 "paramesonephric duct development" evidence=IEA

GO:0061360 "optic chiasma development" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0071260 "cellular response to mechanical stimulus" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0072108 "positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis" evidence=IEA

GO:0072162 "metanephric mesenchymal cell differentiation" evidence=IEA

GO:0072172 "mesonephric tubule formation" evidence=IEA

GO:0072177 "mesonephric duct development" evidence=IEA

GO:0072179 "nephric duct formation" evidence=IEA

GO:0072197 "ureter morphogenesis" evidence=IEA

GO:0072205 "metanephric collecting duct development" evidence=IEA

GO:0072221 "metanephric distal convoluted tubule development" evidence=IEA

GO:0072289 "metanephric nephron tubule formation" evidence=IEA

GO:0072300 "positive regulation of metanephric glomerulus development" evidence=IEA

GO:0072305 "negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis" evidence=IEA

GO:0072307 "regulation of metanephric nephron tubule epithelial cell differentiation" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0090103 "cochlea morphogenesis" evidence=IEA

GO:0090190 "positive regulation of branching involved in ureteric bud morphogenesis" evidence=IEA

GO:1900215 "negative regulation of apoptotic process involved in metanephric collecting duct development" evidence=IEA

GO:1900218 "negative regulation of apoptotic process involved in metanephric nephron tubule development" evidence=IEA

GO:2000594 "positive regulation of metanephric DCT cell differentiation" evidence=IEA

GO:2000597 "positive regulation of optic nerve formation" evidence=IEA

UNIPROTKB|F1ST83 PAX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKIEQYKRENPT 109
             R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct:    50 RPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPT 108

Query:   110 IFAWEIRERLISEDV 124
             +FAWEIR+RL++E V
Sbjct:   109 MFAWEIRDRLLAERV 123

GO:0005634 "nucleus" evidence=IEA

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|G3V5S4 PAX2 "Paired box protein Pax-2" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query:    55 RHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKIEQYKRENPT 109
             R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct:    54 RPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPT 112

Query:   110 IFAWEIRERLISEDV 124
             +FAWEIR+RL++E +
Sbjct:   113 MFAWEIRDRLLAEGI 127

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P26367	PAX6_HUMAN	No assigned EC number	0.5822	0.4701	0.1682	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
smart00351	125	smart00351, PAX, Paired Box domain	3e-25
cd00131	128	cd00131, PAX, Paired Box domain	3e-24
pfam00292	125	pfam00292, PAX, 'Paired box' domain	2e-23

>gnl|CDD|128645 smart00351, PAX, Paired Box domain

 Score = 92.8 bits (231), Expect = 3e-25
 Identities = 41/62 (66%), Positives = 47/62 (75%), Gaps = 7/62 (11%)

Query: 69  GAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 122
           G VSK+L      G++RP G IGGSKPKVATP VV KI  YK+ENP IFAWEIR+RL+SE
Sbjct: 48  GCVSKILGRYYETGSIRP-GAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLSE 106

Query: 123 DV 124
            V
Sbjct: 107 GV 108

Length = 125

>gnl|CDD|238076 cd00131, PAX, Paired Box domain

 Score = 90.2 bits (224), Expect = 3e-24
 Identities = 39/62 (62%), Positives = 47/62 (75%), Gaps = 7/62 (11%)

Query: 69  GAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 122
           G VSK+L      G++RP G IGGSKP+VATP VV KIE YK+ENP +FAWEIR+RL+ E
Sbjct: 48  GCVSKILNRYYETGSIRP-GAIGGSKPRVATPEVVKKIEIYKQENPGMFAWEIRDRLLQE 106

Query: 123 DV 124
            V
Sbjct: 107 GV 108

Length = 128

>gnl|CDD|109353 pfam00292, PAX, 'Paired box' domain

 Score = 88.3 bits (219), Expect = 2e-23
 Identities = 44/78 (56%), Positives = 52/78 (66%), Gaps = 11/78 (14%)

Query: 64  LHQQQGAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRE 117
           L    G VSK+L      G++RP G+IGGSKPKVATP VV KI +YKRENP IFAWEIR+
Sbjct: 43  LRVSHGCVSKILGRYQETGSIRP-GVIGGSKPKVATPEVVKKIAEYKRENPGIFAWEIRD 101

Query: 118 RLISEDVGVNGLALQTPP 135
           RL++E V  N       P
Sbjct: 102 RLLAEGVCDN----DNVP 115

Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PF00292	125	PAX: 'Paired box' domain; InterPro: IPR001523 The	100.0
KOG3517|consensus	334		100.0
KOG3862|consensus	327		100.0
KOG0849|consensus	354		100.0
cd00131	128	PAX Paired Box domain	99.96
smart00351	125	PAX Paired Box domain.	99.94
PF13551	112	HTH_29: Winged helix-turn helix	97.53
PF13565	77	HTH_32: Homeodomain-like domain	96.61
PF01710	119	HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Tr	94.01
PF13011	85	LZ_Tnp_IS481: leucine-zipper of insertion element	92.89
PF11427	50	HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C	91.33
COG3415	138	Transposase and inactivated derivatives [DNA repli	89.22
PF13384	50	HTH_23: Homeodomain-like domain; PDB: 2X48_C.	86.79
KOG3862|consensus	327		83.25

>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]

Probab=100.00  E-value=1e-61  Score=372.45  Aligned_cols=116  Identities=45%  Similarity=0.652  Sum_probs=91.7

Q ss_pred             ccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc-----CCCccCCCCCcccChH
Q psy16493         25 LIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPA   95 (151)
Q Consensus        25 ~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r-----~pG~IGGSKPkvatp~   95 (151)
                      +++++|||||+|+||||||+++|+||    ++|+|||||||+|.| |||||||||+||+     .||+|||||||++||+
T Consensus         1 g~~~~NqlGg~~~nGrPLp~~~R~rIvela~~G~rp~~Isr~l~V-s~gcVsKIl~Ry~eTGsi~Pg~iGGskprv~tp~   79 (125)
T PF00292_consen    1 GQGRVNQLGGVFINGRPLPNELRQRIVELAKEGVRPCDISRQLRV-SHGCVSKILSRYRETGSIRPGPIGGSKPRVATPE   79 (125)
T ss_dssp             S-EEE-TTS-EEETTSSS-HHHHHHHHHHHHTT--HHHHHHHHT---HHHHHHHHHHHHHHS-SS----S----SSS-HC
T ss_pred             CCccccccCceeeCCccCcHHHHHHHHHHhhhcCCHHHHHHHHcc-chhHHHHHHHHHHHhcccCcccccCCCCCCCChH
Confidence            58999999999999999999999998    789999999999985 9999999999987     6999999999999999


Q ss_pred             HHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHh
Q psy16493         96 VVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEE  141 (151)
Q Consensus        96 V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR  141 (151)
                      |+++|++||+|||+||||||||+|++||+|+++++|||||||||||
T Consensus        80 v~~~I~~~k~enP~ifawEiR~~L~~~gvc~~~~~PsvssInRilr  125 (125)
T PF00292_consen   80 VVEKIEQYKRENPTIFAWEIRDRLIADGVCDRSNVPSVSSINRILR  125 (125)
T ss_dssp             HHHHHHHHHHH-TTS-HHHHHHHHHHTTSS-TTTS--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHcCCCCCCCCCCHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999997

Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.

>KOG3517|consensus

Probab=100.00  E-value=3.1e-61  Score=410.25  Aligned_cols=123  Identities=35%  Similarity=0.549  Sum_probs=117.8

Q ss_pred             ccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccC-----CCccCCCCCcccChH
Q psy16493         25 LIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPA   95 (151)
Q Consensus        25 ~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~-----pG~IGGSKPkvatp~   95 (151)
                      ..|.|||||||||||||||+.+|.||    +.|+|||||||||+| |||||||||.||.+     ||+||||||||+||.
T Consensus         4 ~~GEVNQLGGVFVNGRPLPna~RlrIVELarlGiRPCDISRQLrv-SHGCVSKILaRy~EtGsIlPGaIGGSkPRVTTP~   82 (334)
T KOG3517|consen    4 SYGEVNQLGGVFVNGRPLPNAIRLRIVELARLGIRPCDISRQLRV-SHGCVSKILARYNETGSILPGAIGGSKPRVTTPK   82 (334)
T ss_pred             cccchhhccceeEcCccCcchhhhhHHHHHHcCCCccchhhhhhh-ccchHHHHHHHhccCCcccccccCCCCCccCChh
Confidence            45799999999999999999999999    789999999999995 99999999999874     899999999999999


Q ss_pred             HHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhcccc
Q psy16493         96 VVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLR  148 (151)
Q Consensus        96 V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~~~~  148 (151)
                      ||+.|.+||+..|+|||||||||||+|||||+.||||||||+||||||++.+.
T Consensus        83 VV~~IR~~Kq~DPGIFAWEIRDRLlsdgiCDk~NvPSVSSISRILRNKiGsLa  135 (334)
T KOG3517|consen   83 VVKYIRSLKQRDPGIFAWEIRDRLLSDGICDKYNVPSVSSISRILRNKIGSLA  135 (334)
T ss_pred             HHHHHHHhhccCCceeeehhhhhhhhcccccccCCcchHHHHHHHHhhhcccc
Confidence            99999999999999999999999999999999999999999999999988764

>KOG3862|consensus

Probab=100.00  E-value=3.2e-55  Score=374.89  Aligned_cols=126  Identities=41%  Similarity=0.620  Sum_probs=120.5

Q ss_pred             cccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc-----CCCccCCCCCcccCh
Q psy16493         24 KLIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATP   94 (151)
Q Consensus        24 ~~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r-----~pG~IGGSKPkvatp   94 (151)
                      .+||||||||||||||||||+.+|++|    |.|+|||||||||+| |||||||||+||.     .||+|||||||||||
T Consensus         8 ~ghgGvNQLGGvFVNGRPlpd~Vr~rIv~La~~gvrpcdisrQl~v-ShGcvSkil~r~yEtgS~~pg~iggsk~KvAtp   86 (327)
T KOG3862|consen    8 SGHGGVNQLGGVFVNGRPLPDVVRQRIVELAQNGVRPCDISRQLRV-SHGCVSKILGRYYETGSIRPGVIGGSKPKVATP   86 (327)
T ss_pred             CCccchhhccceeecCccCchHHHHHHHHHHHcCCcchhHHHHHhh-ccCCchhHHHHHHHhcCcccCCCCCCccccccc
Confidence            489999999999999999999999999    899999999999995 9999999999876     499999999999999


Q ss_pred             HHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhcccccC
Q psy16493         95 AVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRKG  150 (151)
Q Consensus        95 ~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~~~~~g  150 (151)
                      .|+++|..||++||+||||||||+|+.+++|+.+++|||||||||+|++..+.-+|
T Consensus        87 ~Vvk~i~~~k~~n~~mfaweiR~~l~~~~ic~~d~vpsVssinri~r~~~~~~~~~  142 (327)
T KOG3862|consen   87 KVVKKIALYKRQNPTMFAWEIRDRLLAEPICDNDTVPSVSSINRIIRTKVQQKQLG  142 (327)
T ss_pred             hHHHHHHHHhhcCcchhhhhhhhhhhcccccCCCCCchHHHHHHHHHHhhhhcccC
Confidence            99999999999999999999999999999999999999999999999998876555

>KOG0849|consensus

Probab=100.00  E-value=4.3e-39  Score=278.37  Aligned_cols=122  Identities=36%  Similarity=0.531  Sum_probs=115.0

Q ss_pred             chhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc-----CCCccCCCCCc-ccChHH
Q psy16493         27 GSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPK-VATPAV   96 (151)
Q Consensus        27 ~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r-----~pG~IGGSKPk-vatp~V   96 (151)
                      +++|||||+|+||||||+++|++|    +.|.|||+|+|+|.| |||||||||+||.     .||.|||+||+ ++||+|
T Consensus         1 ~~~n~~~~~f~~~~~~~~~~r~~~~~~a~~~~~~~~~~~~l~v-s~~~~~~il~r~~~~~~i~p~~i~~~~~~~~~t~~~   79 (354)
T KOG0849|consen    1 GRVNQLGGVFINGRPLPNHTRQKIVEMAHKGIRPCVISRQLKV-SHGCVSKILNRYYRTGSIRPGGIGGSKPRIVATPEV   79 (354)
T ss_pred             CCcccCCcccccCCCCCCchhhccccccccccCcccchhhhhh-hhHHHHhhhcccccccccccccccccccCCCCCchh
Confidence            579999999999999999999998    789999999999995 9999999999886     37889999999 999999


Q ss_pred             HHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhccccc
Q psy16493         97 VSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLRK  149 (151)
Q Consensus        97 ~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~~~~~  149 (151)
                      +.+|++||++||+||+||||++|+.+++|+..++||+++|+|++|+.....-+
T Consensus        80 ~~~i~~~k~~~P~~~~~~ir~~l~~~~~~~~~t~Ps~ssi~r~~r~~~~~~d~  132 (354)
T KOG0849|consen   80 EAKIEQYKRENPAMFAWEIRDQLLHEGLCTQATLPSVSSINRVLRNGALGKDQ  132 (354)
T ss_pred             HHHHHHHHhcCCcccchhhhhcccCcccccCCCCCChhhhhHHhhcccccccc
Confidence            99999999999999999999999999999999999999999999998765543

>cd00131 PAX Paired Box domain

Probab=99.96  E-value=3.1e-29  Score=189.76  Aligned_cols=119  Identities=40%  Similarity=0.587  Sum_probs=111.5

Q ss_pred             ccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc-----CCCccCCCCCcccChH
Q psy16493         25 LIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPA   95 (151)
Q Consensus        25 ~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r-----~pG~IGGSKPkvatp~   95 (151)
                      +++++|||||+|+||+||+.+.|++|    +.|..+.+||+++.| |.+||+|++.+|+     .|...||.+|+..+++
T Consensus         1 ~~~~~~~~~~~~~m~~~lS~d~R~rIv~~~~~G~s~~~iA~~~~V-s~~tV~r~i~r~~e~G~v~pk~~gg~rpr~~~~~   79 (128)
T cd00131           1 GQGGVNQLGGVFVNGRPLPDSIRQRIVELAQSGIRPCDISRQLRV-SHGCVSKILNRYYETGSIRPGAIGGSKPRVATPE   79 (128)
T ss_pred             CCccccCCCccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHcCCcCCCCCCCCCCCcCCHH
Confidence            46899999999999999999999998    789999999999985 9999999999887     3677789899999999


Q ss_pred             HHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhh
Q psy16493         96 VVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKY  144 (151)
Q Consensus        96 V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~  144 (151)
                      .+..|+.+..+||.+++|||+++|..+|+|.+++.||+|+|+|+|++|+
T Consensus        80 ~~~~i~~~v~~~p~~Tl~El~~~L~~~gv~~~~~~~s~stI~R~L~~~~  128 (128)
T cd00131          80 VVKKIEIYKQENPGMFAWEIRDRLLQEGVCDKSNVPSVSSINRILRNKA  128 (128)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCcccCCCCCHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999874

>smart00351 PAX Paired Box domain

Probab=99.94  E-value=7.6e-27  Score=175.29  Aligned_cols=116  Identities=43%  Similarity=0.612  Sum_probs=108.7

Q ss_pred             ccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc-----CCCccCCCCCcccChH
Q psy16493         25 LIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPA   95 (151)
Q Consensus        25 ~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r-----~pG~IGGSKPkvatp~   95 (151)
                      ++.++|||||+|++|+||+.+.|++|    +.|....+||+++.+ |..||+|++.+|+     .|...||.+|+..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~s~~~R~riv~~~~~G~s~~~iA~~~gv-s~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~   79 (125)
T smart00351        1 GHGGVNQLGGVFVNGRPLPDEERQRIVELAQNGVRPCDISRQLCV-SHGCVSKILGRYYETGSIRPGAIGGSKPKVATPK   79 (125)
T ss_pred             CCCccccCCCeecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHH
Confidence            36899999999999999999999998    689999999999985 9999999999886     3666788999999999


Q ss_pred             HHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHh
Q psy16493         96 VVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEE  141 (151)
Q Consensus        96 V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR  141 (151)
                      .+..|+++..+||.+++|||++.|.++|+|...++||+|+|+|+||
T Consensus        80 ~~~~I~~~~~~~p~~t~~el~~~L~~~gv~~~~~~Ps~sti~~~l~  125 (125)
T smart00351       80 VVKKIADYKQENPGIFAWEIRDRLLSEGVCDKDNVPSVSSINRILR  125 (125)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCcCCCCCChhhHHHhhC
Confidence            9999999999999999999999999999999999999999999996

>PF13551 HTH_29: Winged helix-turn helix

Probab=97.53  E-value=0.00028  Score=49.25  Aligned_cols=88  Identities=22%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             HhhCC-ccchhhhhhhhhhhhhhhhhhhccCCC-------ccCCCCCcc-cChHHHHHHHHHhhhCCC-----cchHHHH
Q psy16493         51 RLLFR-HYDIAQHVLHQQQGAVSKLLGTLRPPG-------LIGGSKPKV-ATPAVVSKIEQYKRENPT-----IFAWEIR  116 (151)
Q Consensus        51 ~~GvR-pcdISrqL~vVSHGCVSKIL~r~r~pG-------~IGGSKPkv-atp~V~~kI~~yk~enP~-----iFaWEIR  116 (151)
                      .+|+. +.+|++.+.+ |..=|.+.+.+|+.-|       .-++-+|+. .|++.++.|.++-.++|.     ...=+++
T Consensus         9 ~~g~~~~~~ia~~lg~-s~~Tv~r~~~~~~~~G~~~l~~~~~~~g~~~~~l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~   87 (112)
T PF13551_consen    9 AEGVSTIAEIARRLGI-SRRTVYRWLKRYREGGIEGLLPRKPRGGRPRKRLSEEQRAQLIELLRENPPEGRSRWTLEELA   87 (112)
T ss_pred             HcCCCcHHHHHHHHCc-CHHHHHHHHHHHHcccHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCcccHHHHH
Confidence            68994 9999999985 9999999999987444       112334554 799999999999999993     3445678


Q ss_pred             hhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493        117 ERLISEDVGVNGLALQTPPRNAIEEI  142 (151)
Q Consensus       117 drLi~~gvC~~~~vPSVSSInRilR~  142 (151)
                      +.|+++..   .--+|.++|.|+|+.
T Consensus        88 ~~l~~~~~---~~~~s~~ti~r~L~~  110 (112)
T PF13551_consen   88 EWLIEEEF---GIDVSPSTIRRILKR  110 (112)
T ss_pred             HHHHHhcc---CccCCHHHHHHHHHH
Confidence            87866654   234799999999975

>PF13565 HTH_32: Homeodomain-like domain

Probab=96.61  E-value=0.0052  Score=41.18  Aligned_cols=67  Identities=24%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             hhhhhhhccCCCcc---------CCCCCcccChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHH
Q psy16493         71 VSKLLGTLRPPGLI---------GGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIE  140 (151)
Q Consensus        71 VSKIL~r~r~pG~I---------GGSKPkvatp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRil  140 (151)
                      |++.+.+|+.-|.-         .+-+|+. ++++++.|.++..++|..-..+|.+.|..+.-..-  -||.|.|+|+|
T Consensus         2 v~rw~~ry~~~G~~gL~~~~~~~~~Grp~~-~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~--~~S~~tv~R~L   77 (77)
T PF13565_consen    2 VYRWLKRYREEGLEGLKDRKRRPRPGRPRK-DPEQRERIIALIEEHPRWTPREIAEYLEEEFGISV--RVSRSTVYRIL   77 (77)
T ss_pred             HHHHHHHHHhhCchhhhcccccCCCCCCCC-cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCC--CccHhHHHHhC
Confidence            56677777643411         1124445 78999999999999999999999999988732221  57999999986

>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition

Probab=94.01  E-value=0.17  Score=37.61  Aligned_cols=85  Identities=18%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             chhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCCCcccCh---HHHHHHHHHhhhCCCcchHHH
Q psy16493         43 ASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATP---AVVSKIEQYKRENPTIFAWEI  115 (151)
Q Consensus        43 p~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSKPkvatp---~V~~kI~~yk~enP~iFaWEI  115 (151)
                      +.+.|+++    ..|....++|+...| |-.-|-..+.+.+ +|   ..+|+....   + .+.+.++-.++|.+.-+||
T Consensus         4 S~DlR~rVl~~~~~g~s~~eaa~~F~V-S~~Tv~~W~k~~~-~G---~~~~k~r~~~Kid-~~~L~~~v~~~pd~tl~El   77 (119)
T PF01710_consen    4 SLDLRQRVLAYIEKGKSIREAAKRFGV-SRNTVYRWLKRKE-TG---DLEPKPRGRKKID-RDELKALVEENPDATLREL   77 (119)
T ss_pred             CHHHHHHHHHHHHccchHHHHHHHhCc-HHHHHHHHHHhcc-cc---ccccccccccccc-HHHHHHHHHHCCCcCHHHH
Confidence            45789997    679999999999875 9889999888554 33   222222211   2 3457888889999999999


Q ss_pred             HhhhhhcCCCCCCCCCCCChhhHHHhhh
Q psy16493        116 RERLISEDVGVNGLALQTPPRNAIEEIK  143 (151)
Q Consensus       116 RdrLi~~gvC~~~~vPSVSSInRilR~k  143 (151)
                      .++|   ||       |.++|++.|+..
T Consensus        78 a~~l---~V-------s~~ti~~~Lkrl   95 (119)
T PF01710_consen   78 AERL---GV-------SPSTIWRALKRL   95 (119)
T ss_pred             HHHc---CC-------CHHHHHHHHHHc
Confidence            9887   43       788999998643

This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481

Probab=92.89  E-value=0.16  Score=37.39  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             CcchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC----CCCCc----ccChHHHHHHHHHhh
Q psy16493         41 PLASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG----GSKPK----VATPAVVSKIEQYKR  105 (151)
Q Consensus        41 PLp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG----GSKPk----vatp~V~~kI~~yk~  105 (151)
                      +|...-|..+     ..|....+.++...| |.-|+.|-+.||+.-|.-|    .|+|+    -+.+++|..|.+.++
T Consensus         8 ~Lt~~gR~~lv~~vv~~g~~~a~aA~~~gV-S~~Ta~kW~~Ryra~G~~GL~DRSSRP~~sP~~t~~~~~~~I~~lRr   84 (85)
T PF13011_consen    8 RLTPRGRLRLVRRVVEQGWPVAHAAAEFGV-SRRTAYKWLARYRAEGEAGLQDRSSRPHRSPRRTPPEVERRIIELRR   84 (85)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHhCC-CHHHHHHHHHHHHHcCcccccccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            4555555554     578999999999985 9999999999999544443    34555    456789999988875

>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C

Probab=91.33  E-value=0.13  Score=34.35  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             CCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhh
Q psy16493         39 QQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLG   76 (151)
Q Consensus        39 GRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~   76 (151)
                      |.+|.+.++-+|    +.|+.-.+|||++.. |+-||.+.|.
T Consensus         2 G~~Lt~~Eqaqid~m~qlG~s~~~isr~i~R-Sr~~Ir~yl~   42 (50)
T PF11427_consen    2 GKTLTDAEQAQIDVMHQLGMSLREISRRIGR-SRTCIRRYLK   42 (50)
T ss_dssp             S----HHHHHHHHHHHHTT--HHHHHHHHT---HHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhchhHHHHHHHhCc-cHHHHHHHhc
Confidence            789999999998    689999999999997 9999998874

>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=89.22  E-value=0.86  Score=35.89  Aligned_cols=93  Identities=12%  Similarity=0.185  Sum_probs=63.8

Q ss_pred             CCCcchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccC-----CCccCCCCCcccChHHHHHH-HHHhhhC
Q psy16493         39 QQPLASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRP-----PGLIGGSKPKVATPAVVSKI-EQYKREN  107 (151)
Q Consensus        39 GRPLp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~-----pG~IGGSKPkvatp~V~~kI-~~yk~en  107 (151)
                      .+|..+..|+++     ..|.+-.+||..+.| |-+=|=+-++||++     |...||.+|+..+.+-++-+ +..+..+
T Consensus         2 ~k~~s~~~R~~~~~~~~~~G~S~re~Ak~~gv-s~sTvy~wv~r~~e~G~~l~~~~~~GrP~kl~~~q~~~l~e~~~~k~   80 (138)
T COG3415           2 AKPFSNDLRERVVDAVVGEGLSCREAAKRFGV-SISTVYRWVRRYRETGLDLPPKPRKGRPRKLSEEQLEILLERLREKD   80 (138)
T ss_pred             CchhhHHHHHHHHHHHHHcCccHHHHHHHhCc-cHHHHHHHHHHhccccccccCccCCCCCcccCHHHHHHHHHHHhccc
Confidence            367777888886     579999999999985 98888889999985     44558888987776644444 4444444


Q ss_pred             CCcchHHHH---hhhh-hcCCCCCCCCCCCChhhHHHhh
Q psy16493        108 PTIFAWEIR---ERLI-SEDVGVNGLALQTPPRNAIEEI  142 (151)
Q Consensus       108 P~iFaWEIR---drLi-~~gvC~~~~vPSVSSInRilR~  142 (151)
                           |+..   +.|- +-||=     =+-+++.++|+.
T Consensus        81 -----wTl~~~~~~l~~e~gv~-----y~~~~v~~~l~~  109 (138)
T COG3415          81 -----WTLKELVEELGLEFGVW-----YHASAVRRLLHE  109 (138)
T ss_pred             -----chHHHHHHHHhhhcCeE-----EeHHHHHHHHHH
Confidence                 7754   4433 45551     123477777764

>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C

Probab=86.79  E-value=0.31  Score=30.25  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=20.4

Q ss_pred             HhhCCccchhhhhhhhhhhhhhhhhhhccCCC
Q psy16493         51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPG   82 (151)
Q Consensus        51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG   82 (151)
                      ..|....+||+.|.+ |..-|++++.+|++-|
T Consensus        15 ~~G~s~~~ia~~lgv-s~~Tv~~w~kr~~~~G   45 (50)
T PF13384_consen   15 REGWSIREIAKRLGV-SRSTVYRWIKRYREEG   45 (50)
T ss_dssp             HHT--HHHHHHHHTS--HHHHHHHHT------
T ss_pred             HCCCCHHHHHHHHCc-CHHHHHHHHHHccccc
Confidence            569999999999985 9999999999998644

>KOG3862|consensus

Probab=83.25  E-value=0.26  Score=43.70  Aligned_cols=53  Identities=9%  Similarity=-0.011  Sum_probs=47.1

Q ss_pred             cccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhh
Q psy16493         24 KLIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGT   77 (151)
Q Consensus        24 ~~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r   77 (151)
                      +.....|-.+.-++-|+||.+..++++    ..++|--.|..|+.. +|+||||.|.+
T Consensus        98 ~n~~mfaweiR~~l~~~~ic~~d~vpsVssinri~r~~~~~~~~~~-~~s~vsk~l~~  154 (327)
T KOG3862|consen   98 QNPTMFAWEIRDRLLAEPICDNDTVPSVSSINRIIRTKVQQKQLGI-THSCVTKVLAR  154 (327)
T ss_pred             cCcchhhhhhhhhhhcccccCCCCCchHHHHHHHHHHhhhhcccCC-ccchhhccccC
Confidence            456677888899999999999999997    689999999999986 99999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
2k27_A	159	Solution Structure Of Human Pax8 Paired Box Domain		1e-16
1k78_A	149	Pax5(1-149)+ets-1(331-440)+dna Length = 149		1e-16
6pax_A	133	Crystal Structure Of The Human Pax-6 Paired Domain-		1e-16
1pdn_C	128	Crystal Structure Of A Paired Domain-Dna Complex At		1e-13

>pdb|2K27|A Chain A, Solution Structure Of Human Pax8 Paired Box Domain Length = 159

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 8/80 (10%)
Query: 54  FRHYDIAQHVLHQQQGAVSKLLG------TLRPPGLIGGSKPKVATPAVVSKIEQYKREN 107
            R  DI++  L    G VSK+LG      ++RP G+IGGSKPKVATP VV KI  YKR+N
Sbjct: 42  VRPCDISRQ-LRVSHGCVSKILGRYYETGSIRP-GVIGGSKPKVATPKVVEKIGDYKRQN 99
Query: 108 PTIFAWEIRERLISEDVGVN 127
           PT+FAWEIR+RL++E V  N
Sbjct: 100 PTMFAWEIRDRLLAEGVCDN 119

>pdb|1K78|A Chain A, Pax5(1-149)+ets-1(331-440)+dna Length = 149

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 6/79 (7%)
Query: 54  FRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPAVVSKIEQYKRENP 108
            R  DI++  L    G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NP
Sbjct: 49  VRPCDISRQ-LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNP 107
Query: 109 TIFAWEIRERLISEDVGVN 127
           T+FAWEIR+RL++E V  N
Sbjct: 108 TMFAWEIRDRLLAERVCDN 126

>pdb|6PAX|A Chain A, Crystal Structure Of The Human Pax-6 Paired Domain-Dna Complex Reveals A General Model For Pax Protein-Dna Interactions Length = 133

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 56/79 (70%), Gaps = 8/79 (10%)
Query: 55  RHYDIAQHVLHQQQGAVSKLLG------TLRPPGLIGGSKPKVATPAVVSKIEQYKRENP 108
           R  DI++ +L    G VSK+LG      ++RP   IGGSKP+VATP VVSKI QYK+E P
Sbjct: 35  RPCDISR-ILQVSNGCVSKILGRYYATGSIRPRA-IGGSKPRVATPEVVSKIAQYKQECP 92
Query: 109 TIFAWEIRERLISEDVGVN 127
           +IFAWEIR+RL+SE V  N
Sbjct: 93  SIFAWEIRDRLLSEGVCTN 111

>pdb|1PDN|C Chain C, Crystal Structure Of A Paired Domain-Dna Complex At 2.5 Angstroms Resolution Reveals Structural Basis For Pax Developmental Mutations Length = 128

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 7/67 (10%)
Query: 64  LHQQQGAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRE 117
           L    G VSK+L      G++RP G+IGGSKP++ATP + ++IE+YKR +P +F+WEIRE
Sbjct: 43  LRVSHGCVSKILNRYQETGSIRP-GVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIRE 101
Query: 118 RLISEDV 124
           +LI E V
Sbjct: 102 KLIREGV 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1pdn_C	128	Protein (PRD paired); protein-DNA complex, double	2e-16
1k78_A	149	Paired box protein PAX5; paired domain, ETS domain	9e-16
2k27_A	159	Paired box protein PAX-8; paired domain, solution	8e-15
1ic8_A	194	Hepatocyte nuclear factor 1-alpha; transcription r	4e-05
2h8r_A	221	Hepatocyte nuclear factor 1-beta; trasncription fa	4e-04

>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Length = 128

 Score = 70.1 bits (171), Expect = 2e-16
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 10/93 (10%)

Query: 41  PLASLVNQQQRLLF----RHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKV 91
           PL + +  +   +     R   I++  L    G VSK+L   +      PG+IGGSKP++
Sbjct: 17  PLPNNIRLKIVEMAADGIRPCVISRQ-LRVSHGCVSKILNRYQETGSIRPGVIGGSKPRI 75

Query: 92  ATPAVVSKIEQYKRENPTIFAWEIRERLISEDV 124
           ATP + ++IE+YKR +P +F+WEIRE+LI E V
Sbjct: 76  ATPEIENRIEEYKRSSPGMFSWEIREKLIREGV 108

>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Length = 149

 Score = 68.7 bits (167), Expect = 9e-16
 Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 6/75 (8%)

Query: 55  RHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPAVVSKIEQYKRENPT 109
           R  DI++ +     G VSK+LG         PG+IGGSKPKVATP VV KI +YKR+NPT
Sbjct: 50  RPCDISRQLR-VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPT 108

Query: 110 IFAWEIRERLISEDV 124
           +FAWEIR+RL++E V
Sbjct: 109 MFAWEIRDRLLAERV 123

>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Length = 159

 Score = 66.4 bits (161), Expect = 8e-15
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 6/75 (8%)

Query: 55  RHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPAVVSKIEQYKRENPT 109
           R  DI++ +     G VSK+LG         PG+IGGSKPKVATP VV KI  YKR+NPT
Sbjct: 43  RPCDISRQLR-VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPT 101

Query: 110 IFAWEIRERLISEDV 124
           +FAWEIR+RL++E V
Sbjct: 102 MFAWEIRDRLLAEGV 116

>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 98  SKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPR 136
           + +E   +E+P   A  ++  L   ++    +   T   
Sbjct: 18  AVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLN 56

>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 5/39 (12%), Positives = 16/39 (41%)

Query: 98  SKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPR 136
           +++++   E+P   A  I+  +   ++    +   T   
Sbjct: 19  AEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLN 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1pdn_C	128	Protein (PRD paired); protein-DNA complex, double	99.65
1k78_A	149	Paired box protein PAX5; paired domain, ETS domain	99.59
2k27_A	159	Paired box protein PAX-8; paired domain, solution	99.4
1ic8_A	194	Hepatocyte nuclear factor 1-alpha; transcription r	98.22
1u78_A	141	TC3 transposase, transposable element TC3 transpos	98.11
2h8r_A	221	Hepatocyte nuclear factor 1-beta; trasncription fa	97.46
3hot_A	345	Transposable element mariner, complete CDS; protei	96.05
1tc3_C	51	Protein (TC3 transposase); DNA binding, helix-turn	95.74
2jn6_A	97	Protein CGL2762, transposase; GFT PSI-2, protein s	85.68
1jko_C	52	HIN recombinase, DNA-invertase HIN; water-mediated	81.55

>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5

Probab=99.65  E-value=1.3e-16  Score=110.60  Aligned_cols=117  Identities=32%  Similarity=0.518  Sum_probs=99.0

Q ss_pred             ccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCC-----ccCCCCCcccChH
Q psy16493         25 LIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPG-----LIGGSKPKVATPA   95 (151)
Q Consensus        25 ~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG-----~IGGSKPkvatp~   95 (151)
                      ++|++|++||+|.++++++.+.|.+|    ..|....+||+.|.+ |+..|++.+.+|+..|     .-+|.+|+..+++
T Consensus         1 ~~~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgi-s~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~   79 (128)
T 1pdn_C            1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQETGSIRPGVIGGSKPRIATPE   79 (128)
T ss_dssp             -CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCST
T ss_pred             CCchHhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHH
Confidence            57999999999999999999999998    579999999999985 9999999998875322     2244467777888


Q ss_pred             HHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493         96 VVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEI  142 (151)
Q Consensus        96 V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~  142 (151)
                      ..+.|.++..++|....|||.++|.++|++.....+|.++|+|+|+.
T Consensus        80 ~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~  126 (128)
T 1pdn_C           80 IENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG  126 (128)
T ss_dssp             HHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence            99999999999999999999999988888765666899999999975

>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A

Probab=99.59  E-value=3e-15  Score=109.39  Aligned_cols=124  Identities=41%  Similarity=0.606  Sum_probs=101.2

Q ss_pred             hccccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCC-----ccCCCCCccc
Q psy16493         22 FNKLIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPG-----LIGGSKPKVA   92 (151)
Q Consensus        22 ~~~~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG-----~IGGSKPkva   92 (151)
                      ..++++++|+|||+|.+++.++.+.|.+|    ..|....+||+.|.+ |...|++.+.+|+..|     .-+|.+|+..
T Consensus        13 ~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgi-s~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~   91 (149)
T 1k78_A           13 SRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV-SHGCVSKILGRYYETGSIKPGVIGGSKPKVA   91 (149)
T ss_dssp             ------CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHSCCCCCCCCCCCCSSS
T ss_pred             ccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCccCCCCCCCCCC
Confidence            45799999999999999999999999998    579999999999985 9999999998876322     2345557777


Q ss_pred             ChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhcc
Q psy16493         93 TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYST  146 (151)
Q Consensus        93 tp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~~  146 (151)
                      +++.++.|.++..++|...+|||.++|..+++|.....+|.++|.|+|+....+
T Consensus        92 ~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~  145 (149)
T 1k78_A           92 TPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQ  145 (149)
T ss_dssp             CHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC---
T ss_pred             CHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999988776678999999999876654

>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}

Probab=99.40  E-value=9.1e-13  Score=97.60  Aligned_cols=123  Identities=42%  Similarity=0.605  Sum_probs=106.4

Q ss_pred             hccccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCc-----cCCCCCccc
Q psy16493         22 FNKLIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGL-----IGGSKPKVA   92 (151)
Q Consensus        22 ~~~~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~-----IGGSKPkva   92 (151)
                      ..++.+.++++||.|..++.++.+.|.+|    ..|....+||++|.+ |...|++.+.+|+..|.     -+|.+|+..
T Consensus         6 ~~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgi-s~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~   84 (159)
T 2k27_A            6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRV-SHGCVSKILGRYYETGSIRPGVIGGSKPKVA   84 (159)
T ss_dssp             CCCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTC-CSHHHHHHHCCSSTTSCCCCCCCCCCCCCCC
T ss_pred             hhhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHhcCCccCCCCCCCCCCCC
Confidence            35688999999999999999999999998    579999999999985 99999999999875443     244446667


Q ss_pred             ChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhc
Q psy16493         93 TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYS  145 (151)
Q Consensus        93 tp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~  145 (151)
                      +++..+.|.++..++|....|||.++|.++++|.....+|.++|+|+|+....
T Consensus        85 ~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~  137 (159)
T 2k27_A           85 TPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ  137 (159)
T ss_dssp             CTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence            88889999999999999999999999999999987777899999999986544

>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1

Probab=98.22  E-value=1e-07  Score=76.35  Aligned_cols=51  Identities=12%  Similarity=0.065  Sum_probs=45.5

Q ss_pred             ChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCC----CCCCCCChhhHHHhhh
Q psy16493         93 TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN----GLALQTPPRNAIEEIK  143 (151)
Q Consensus        93 tp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~----~~vPSVSSInRilR~k  143 (151)
                      .++|+++|++|++++|.+|+|+|++.|.+.|++..    ...+|.|+|+++++..
T Consensus        13 ~~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~   67 (194)
T 1ic8_A           13 AAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKG   67 (194)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSB
T ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcC
Confidence            46899999999999999999999999999999755    4459999999999754

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=98.11  E-value=7.1e-06  Score=57.81  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=74.8

Q ss_pred             CCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-CCCCcccChHHHHHHHHHhhhCCCcchH
Q psy16493         39 QQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-GSKPKVATPAVVSKIEQYKRENPTIFAW  113 (151)
Q Consensus        39 GRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-GSKPkvatp~V~~kI~~yk~enP~iFaW  113 (151)
                      ++.|..+.|.+|    ..|....+||+.|.+ |...|.+.+.++...|..+ ..+|+..+++....|.++ .++|..-+.
T Consensus         4 ~~~~s~~~r~~i~~~~~~G~s~~~ia~~lgi-s~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s~~   81 (141)
T 1u78_A            4 GSALSDTERAQLDVMKLLNVSLHEMSRKISR-SRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKTAR   81 (141)
T ss_dssp             SCCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCCHH
T ss_pred             cccCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCCHH
Confidence            356888888887    579999999999985 9999999999987555332 124566788888888888 778888888


Q ss_pred             HHHhhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493        114 EIRERLISEDVGVNGLALQTPPRNAIEEI  142 (151)
Q Consensus       114 EIRdrLi~~gvC~~~~vPSVSSInRilR~  142 (151)
                      ||.++|   |+     ..|.++|.|+|+.
T Consensus        82 ~i~~~l---g~-----~~s~~tV~r~l~~  102 (141)
T 1u78_A           82 DIRNEL---QL-----SASKRTILNVIKR  102 (141)
T ss_dssp             HHHHHT---TC-----CSCHHHHHHHHHH
T ss_pred             HHHHHH---CC-----CccHHHHHHHHHH
Confidence            999888   33     2688999999975

>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}

Probab=97.46  E-value=1.2e-05  Score=66.21  Aligned_cols=51  Identities=10%  Similarity=0.064  Sum_probs=45.9

Q ss_pred             cChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCC----CCCCCChhhHHHhh
Q psy16493         92 ATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNG----LALQTPPRNAIEEI  142 (151)
Q Consensus        92 atp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~----~vPSVSSInRilR~  142 (151)
                      ..++|+..|++|.+++|.+|+|+||+.++..|+|...    +.+|.|+|+++++.
T Consensus        13 ~~~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~   67 (221)
T 2h8r_A           13 EAAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNK   67 (221)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhC
Confidence            4578999999999999999999999999999998664    56999999999974

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=96.05  E-value=0.013  Score=46.67  Aligned_cols=86  Identities=10%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             CcchhhHHHH----HhhCCccchhhhhh-------hhhhhhhhhhhhhccCCCc-------cCCCCCcccChHHHHHHHH
Q psy16493         41 PLASLVNQQQ----RLLFRHYDIAQHVL-------HQQQGAVSKLLGTLRPPGL-------IGGSKPKVATPAVVSKIEQ  102 (151)
Q Consensus        41 PLp~~~R~ki----~~GvRpcdISrqL~-------vVSHGCVSKIL~r~r~pG~-------IGGSKPkvatp~V~~kI~~  102 (151)
                      |-..+.|.+|    ..|....+|++.|.       + |..-|.+++.+|+. |.       -+| +|+..++   +.|.+
T Consensus         6 ~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~v-s~~tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~   79 (345)
T 3hot_A            6 PNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVP-TVKTCERWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQA   79 (345)
T ss_dssp             CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSC-CHHHHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHH
Confidence            3445677777    68999999999987       6 88899999999874 42       244 5666665   34555


Q ss_pred             HhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493        103 YKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEI  142 (151)
Q Consensus       103 yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~  142 (151)
                      +-.++|..-.-||.+.|   +       -|.++|.|+|+.
T Consensus        80 ~v~~~~~~t~~~ia~~l---~-------vs~~tV~r~L~~  109 (345)
T 3hot_A           80 LLDEDDAQTQKQLAEQL---E-------VSQQAVSNRLRE  109 (345)
T ss_dssp             HHHHCSCCCHHHHHHHT---T-------SCHHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHH---C-------CCHHHHHHHHHH
Confidence            66889999999999988   2       378999999985

>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2

Probab=95.74  E-value=0.0071  Score=34.65  Aligned_cols=42  Identities=10%  Similarity=0.048  Sum_probs=34.8

Q ss_pred             CCC--cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCC
Q psy16493         39 QQP--LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPP   81 (151)
Q Consensus        39 GRP--Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~p   81 (151)
                      |||  |+...+.+|    ..|....+||++|-+ |..-|.+++.+++.-
T Consensus         1 GR~~~l~~~~~~~i~~~~~~g~s~~~IA~~lgi-s~~Tv~~~~~~~~~~   48 (51)
T 1tc3_C            1 PRGSALSDTERAQLDVMKLLNVSLHEMSRKISR-SRHCIRVYLKDPVSY   48 (51)
T ss_dssp             CCSCCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHCSTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHhhHHhc
Confidence            565  777777776    579999999999985 999999999988743

>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19

Probab=85.68  E-value=0.79  Score=30.71  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             CcchhhHHHH-----Hh-hCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCCCcccChHHHHHHHHHhhhC
Q psy16493         41 PLASLVNQQQ-----RL-LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKREN  107 (151)
Q Consensus        41 PLp~~~R~ki-----~~-GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSKPkvatp~V~~kI~~yk~en  107 (151)
                      ..+.+.+.++     .. |....+|++.+-+ |.+.|.+.+.+|+.-|.-+. .+.....+-.+.|.++++||
T Consensus         5 ~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gI-s~~tl~rW~~~~~~~g~~~~-~~~~~~~~~~~ei~~L~~e~   75 (97)
T 2jn6_A            5 TYSEEFKRDAVALYENSDGASLQQIANDLGI-NRVTLKNWIIKYGSNHNVQG-TTPSAAVSEAEQIRQLKKEN   75 (97)
T ss_dssp             CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTS-CHHHHHHHHHHHCCCSTTCS-CCCCHHHHTHHHHHHHHHCG
T ss_pred             CCCHHHHHHHHHHHHHcCCChHHHHHHHHCc-CHHHHHHHHHHHhhcCcccC-CCCCCCCChHHHHHHHHHHH
Confidence            4556666665     24 8888999999985 99999999999984333222 22222334456677887776

>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C

Probab=81.55  E-value=0.71  Score=26.46  Aligned_cols=40  Identities=8%  Similarity=-0.021  Sum_probs=29.1

Q ss_pred             CCC--cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc
Q psy16493         39 QQP--LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR   79 (151)
Q Consensus        39 GRP--Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r   79 (151)
                      |||  |..+..+.|    ..|....+|++.+-+ |..-|.++|.++.
T Consensus         1 GRp~~~~~~~~~~i~~l~~~g~s~~~ia~~lgv-s~~Tv~r~l~~~~   46 (52)
T 1jko_C            1 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPASS   46 (52)
T ss_dssp             CCCCSSCTTHHHHHHHHHHTTCCHHHHHHTTSC-CHHHHHHHSCTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCC-CHHHHHHHHHHcc
Confidence            455  344444444    578889999999985 9999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1k78a2	61	a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [Ta	2e-24
d6paxa2	65	a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [Ta	4e-23
d1pdnc_	123	a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Dros	8e-13

>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (217), Expect = 2e-24
 Identities = 31/42 (73%), Positives = 38/42 (90%)

Query: 83  LIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDV 124
           +IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E V
Sbjct: 1   VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERV 42

>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (209), Expect = 4e-23
 Identities = 31/40 (77%), Positives = 36/40 (90%)

Query: 85  GGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDV 124
           GGSKP+VATP VVSKI QYK+E P+IFAWEIR+RL+SE V
Sbjct: 1   GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGV 40

>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Paired protein (prd)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.2 bits (143), Expect = 8e-13
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 55  RHYDIAQHVLHQQQGAVSKLLGTLRPPGLI-----GGSKPKVATPAVVSKIEQYKRENPT 109
           R   I++  L    G VSK+L   +  G I     GGSKP++ATP + ++IE+YKR +P 
Sbjct: 34  RPCVISRQ-LRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPG 92

Query: 110 IFAWEIRERLISEDVGVNG 128
           +F+WEIRE+LI E V    
Sbjct: 93  MFSWEIREKLIREGVCDRS 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1pdnc_	123	Paired protein (prd) {Fruit fly (Drosophila melano	100.0
d1k78a2	61	Pax-5 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d6paxa2	65	Pax-6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1k78a1	63	Pax-5 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1uxda_	59	Fructose repressor (FruR), N-terminal domain {Esch	80.56

>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Paired protein (prd)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6e-41  Score=248.94  Aligned_cols=114  Identities=34%  Similarity=0.577  Sum_probs=108.8

Q ss_pred             cchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc-----CCCccCCCCCcccChHH
Q psy16493         26 IGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR-----PPGLIGGSKPKVATPAV   96 (151)
Q Consensus        26 ~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r-----~pG~IGGSKPkvatp~V   96 (151)
                      +|++|||||+|+||||||.++|+||    +.|+++|+||+++.| |++||+|||.+|+     .|+..||.+|+..||++
T Consensus         1 ~~~~n~~gg~~~~GrpLs~dlR~rIv~~~~~G~s~r~iA~~~~V-S~~tV~k~l~r~~~~G~~~~~~~~~~rpr~~t~~~   79 (123)
T d1pdnc_           1 QGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEI   79 (123)
T ss_dssp             CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTH
T ss_pred             CcCcccCCCcccCCcCCCHHHHHHHHHHHHhcCCHHHHHHHHCc-CHHHHHHHHHHHHccCCcCcCCCCCCCCCCCCHHH
Confidence            5899999999999999999999998    789999999999985 9999999999987     36667999999999999


Q ss_pred             HHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHH
Q psy16493         97 VSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIE  140 (151)
Q Consensus        97 ~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRil  140 (151)
                      ++.|.+++.+||.+++|||+|+|..+|+|+.+++||+|+|+|+|
T Consensus        80 ~~~I~~~~~~~P~~t~~El~~~L~~egv~~~~~~pSvStI~RiL  123 (123)
T d1pdnc_          80 ENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLV  123 (123)
T ss_dssp             HHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC
T ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHcCCCCCCCCCChhhHhhcC
Confidence            99999999999999999999999999999999999999999997

>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=219.14  Aligned_cols=61  Identities=57%  Similarity=0.873  Sum_probs=59.9

Q ss_pred             ccCCCCCcccChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhh
Q psy16493         83 LIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIK  143 (151)
Q Consensus        83 ~IGGSKPkvatp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k  143 (151)
                      +|||||||+|||+||++|++||+|||+||||||||+|++||+|+++|+|||||||||||+|
T Consensus         1 vIGGSKPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~nvPSvSsInRilR~k   61 (61)
T d1k78a2           1 VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK   61 (61)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCCCCCchHHHHHHhhcC
Confidence            5999999999999999999999999999999999999999999999999999999999986

>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-38  Score=216.64  Aligned_cols=64  Identities=53%  Similarity=0.746  Sum_probs=62.4

Q ss_pred             CCCCCcccChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhcccc
Q psy16493         85 GGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYSTLR  148 (151)
Q Consensus        85 GGSKPkvatp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~~~~  148 (151)
                      ||||||||||+||++|++||+|||+||||||||+|++||+|+++|||||||||||||+++++..
T Consensus         1 GGSKPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~~vPSvSsInRilR~~~~~~~   64 (65)
T d6paxa2           1 GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ   64 (65)
T ss_dssp             SCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCcCcCCHHHHHHHHHHHHhCCccchHHHHHHHHHcCCCCCCCCCchHHHHHHHHHhhhhhc
Confidence            8999999999999999999999999999999999999999999999999999999999998764

>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.7e-22  Score=136.13  Aligned_cols=56  Identities=29%  Similarity=0.421  Sum_probs=52.0

Q ss_pred             hhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493         28 SLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI   84 (151)
Q Consensus        28 ~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I   84 (151)
                      |+|||||.|+||||||.++|+||    ++|+++|+||+++.| ||+||+|+|.+|++.|.|
T Consensus         1 ~~n~~gg~~~~GrPls~DLR~Riv~~~~~G~s~r~aA~rf~V-S~s~v~k~l~r~reTG~i   60 (63)
T d1k78a1           1 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV-SHGCVSKILGRYYETGSI   60 (63)
T ss_dssp             CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHSCC
T ss_pred             CcCCCCccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHhCC-CHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999998    789999999999995 999999999999966554

>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: GalR/LacI-like bacterial regulator
domain: Fructose repressor (FruR), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.56  E-value=0.16  Score=31.95  Aligned_cols=29  Identities=3%  Similarity=0.045  Sum_probs=24.6

Q ss_pred             ccCCCC----cchhhHHHH-----HhhCCccchhhhhh
Q psy16493         36 AASQQP----LASLVNQQQ-----RLLFRHYDIAQHVL   64 (151)
Q Consensus        36 f~nGRP----Lp~~~R~ki-----~~GvRpcdISrqL~   64 (151)
                      ++||+|    +++++|+||     ..|.+|..++|.|+
T Consensus        20 vLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~Ar~Lr   57 (59)
T d1uxda_          20 VINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR   57 (59)
T ss_dssp             HHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCSCCSCSS
T ss_pred             HHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCHHHHHhc
Confidence            467776    799999998     68999999999886