Psyllid ID: psy16513

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNKPKD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNKPKD
Flexible Loop (DISEMBL)
mqariyeleeeveverqsrakaeKQRADLARELEELGerleeaggatsaqielnKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLktkldeanrtindldvarkkliiensdlvrqlskvtadarmwkikyetnkpkd
Low Complexity Region (SEG)
MQARIYeleeeveveRQSRAKAEKQradlareleelgerleeaggaTSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNKPKD
Disordered region (IsUnstruct)
****************************************************************************************************************TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKY*******
Disordered Region (DISOPRED)
MQARIYELEEEVE***************LARELEE*************************************************************************************************************************
Disordered Region (DISEMBL)
MQARIYELE******************DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNKPKD
Disordered Region (DISPRO)
MQ**IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSAQIELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSDLVRQLSKVTADARMWKIKYETNKPKD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
P05661	1962	Myosin heavy chain, muscl	yes	N/A	0.865	0.068	0.651	4e-41
P13535	1937	Myosin-8 OS=Homo sapiens	yes	N/A	0.660	0.053	0.722	2e-33
Q9TV62	1937	Myosin-4 OS=Sus scrofa GN	yes	N/A	0.692	0.055	0.731	4e-33
Q9BE40	1938	Myosin-1 OS=Bos taurus GN	yes	N/A	0.756	0.060	0.506	4e-33
P24733	1938	Myosin heavy chain, stria	N/A	N/A	0.865	0.069	0.497	7e-33
P02563	1938	Myosin-6 OS=Rattus norveg	yes	N/A	0.923	0.074	0.479	7e-33
P13533	1939	Myosin-6 OS=Homo sapiens	no	N/A	0.858	0.069	0.5	1e-32
Q02566	1938	Myosin-6 OS=Mus musculus	yes	N/A	0.858	0.069	0.5	1e-32
Q9TV61	1939	Myosin-1 OS=Sus scrofa GN	yes	N/A	0.641	0.051	0.692	1e-32
Q5SX40	1942	Myosin-1 OS=Mus musculus	no	N/A	0.641	0.051	0.692	2e-32

>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1 SV=4

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 128/181 (70%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1110 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1169

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
            +SKLRRDLEEANIQHESTLANLRKKHNDAV+EM EQ+DQLNKLK                
Sbjct: 1170 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQ 1229

Query: 105  ------------------------------TKLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                          +KLDE NRT+ND D ++KKL IENSDL+RQ
Sbjct: 1230 TRTACDQLGRDKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQ 1289

Query: 135  L 135
            L
Sbjct: 1290 L 1290

Muscle contraction.
Drosophila melanogaster (taxid: 7227)

>sp|P13535|MYH8_HUMAN Myosin-8 OS=Homo sapiens GN=MYH8 PE=1 SV=3

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 94/108 (87%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI EL EE+E ER SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQ+ELNKKREAE
Sbjct: 1114 LQARIEELGEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQVELNKKREAE 1173

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD 108
              KLRRDLEEA +QHE+ +A LRKKH D+++E+GEQID L ++K KL+
Sbjct: 1174 FQKLRRDLEEATLQHEAMVAALRKKHADSMAELGEQIDNLQRVKQKLE 1221

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|Q9TV62|MYH4_PIG Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1

 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 94/108 (87%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QAR  ELEEE+E ER SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE
Sbjct: 1113 LQARTEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1172

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD 108
              K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+
Sbjct: 1173 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLE 1220

Muscle contraction.

Sus scrofa (taxid: 9823)

>sp|Q9BE40|MYH1_BOVIN Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2

 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 98/164 (59%), Gaps = 46/164 (28%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1131 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1190

Query: 78   TLANLRKKHNDAVSEMGEQI---------------------------------------- 97
            T A LRKKH D+V+E+GEQI                                        
Sbjct: 1191 TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEK 1250

Query: 98   ------DQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQL 135
                  DQL++LKTK DE  R INDL   R +L  E+ +  RQL
Sbjct: 1251 MCRALEDQLSELKTKEDEQQRLINDLTTQRARLQTESGEFSRQL 1294

Muscle contraction.

Bos taurus (taxid: 9913)

>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEE+E ER +RAK EKQRA+L RELEELGERL+EAGGATSAQIELNKKREAE
Sbjct: 1108 LQARIEELEEELEAERNARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAE 1167

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            + K+RRDLEEA++QHE+ ++ LRKKH DA +EM +Q+DQL K+K+               
Sbjct: 1168 LLKIRRDLEEASLQHEAQISALRKKHQDAANEMADQVDQLQKVKSKLEKDKKDLKREMDD 1227

Query: 106  -------------------------------KLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                           +L+++ R+IN+L   + +L  ENSDL RQ
Sbjct: 1228 LESQMTHNMKNKGCSEKVMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQ 1287

Query: 135  L 135
            L
Sbjct: 1288 L 1288

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.

Aequipecten irradians (taxid: 31199)

>sp|P02563|MYH6_RAT Myosin-6 OS=Rattus norvegicus GN=Myh6 PE=2 SV=2

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 114/192 (59%), Gaps = 48/192 (25%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
            QARI ELEEE+E ER +RAK EK R+DL RELEE+ ERLEEAGGATS QIE+NKKREAE 
Sbjct: 1113 QARIEELEEELEAERTARAKVEKLRSDLTRELEEISERLEEAGGATSVQIEMNKKREAEF 1172

Query: 62   SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL--------------------- 100
             K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L                     
Sbjct: 1173 QKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDV 1232

Query: 101  -------------------------NKLKTKLDEANRTINDLDVARKKLIIENSDLVRQL 135
                                     N+ + KL+EA R++ND    R KL  EN +L RQL
Sbjct: 1233 TSHMEQIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQL 1292

Query: 136  SKVTADARMWKI 147
             +   +A +W++
Sbjct: 1293 EE--KEALIWQL 1302

Muscle contraction.

Rattus norvegicus (taxid: 10116)

>sp|P13533|MYH6_HUMAN Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=5

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 108/180 (60%), Gaps = 46/180 (25%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
            QARI ELEEE+E ER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE 
Sbjct: 1114 QARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEF 1173

Query: 62   SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL--------------------- 100
             K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L                     
Sbjct: 1174 QKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDV 1233

Query: 101  -------------------------NKLKTKLDEANRTINDLDVARKKLIIENSDLVRQL 135
                                     N+ + KL+EA R++ND    R KL  EN +L RQL
Sbjct: 1234 TSNMEQIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQL 1293

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|Q02566|MYH6_MOUSE Myosin-6 OS=Mus musculus GN=Myh6 PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 108/180 (60%), Gaps = 46/180 (25%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
            QARI ELEEE+E ER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE 
Sbjct: 1114 QARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEF 1173

Query: 62   SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL--------------------- 100
             K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L                     
Sbjct: 1174 QKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDV 1233

Query: 101  -------------------------NKLKTKLDEANRTINDLDVARKKLIIENSDLVRQL 135
                                     N+ + KL+EA R++ND    R KL  EN +L RQL
Sbjct: 1234 TSNMEQIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQL 1293

Muscle contraction.

Mus musculus (taxid: 10090)

>sp|Q9TV61|MYH1_PIG Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 86/104 (82%), Gaps = 4/104 (3%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1132 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1191

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTINDL 117
            T A LRKKH D+V+E+GEQID L ++K KL+    E    I+DL
Sbjct: 1192 TAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDL 1235

Muscle contraction.

Sus scrofa (taxid: 9823)

>sp|Q5SX40|MYH1_MOUSE Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 86/104 (82%), Gaps = 4/104 (3%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1135 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1194

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTINDL 117
            T A LRKKH D+V+E+GEQID L ++K KL+    E    I+DL
Sbjct: 1195 TAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDL 1238

Muscle contraction.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
229472621	836	myosin heavy chain [Bombyx mandarina]	0.955	0.178	0.622	1e-47
170029180	1946	myosin-2 heavy chain [Culex quinquefasci	0.865	0.069	0.569	3e-45
328702403	1969	PREDICTED: myosin heavy chain, muscle is	0.865	0.068	0.662	1e-40
189239927	1960	PREDICTED: similar to Myosin heavy chain	0.865	0.068	0.662	2e-40
189239937	1960	PREDICTED: similar to Myosin heavy chain	0.865	0.068	0.662	2e-40
183979376	1965	muscle myosin heavy chain [Papilio xuthu	0.865	0.068	0.668	3e-40
197322818	836	myosin heavy chain [Bombyx mori]	0.955	0.178	0.627	3e-40
189239931	1960	PREDICTED: similar to Myosin heavy chain	0.865	0.068	0.657	7e-40
270011842	2287	hypothetical protein TcasGA2_TC005924 [T	0.865	0.059	0.657	7e-40
189239935	1960	PREDICTED: similar to Myosin heavy chain	0.865	0.068	0.657	8e-40

>gi|229472621|gb|ACQ72825.1| myosin heavy chain [Bombyx mandarina]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 136/196 (69%), Gaps = 47/196 (23%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +Q RI ELEEEVE ERQ+RAKAEKQRADLARE EELGERLEEAGGATSAQIELNKKREAE
Sbjct: 86  LQGRIEELEEEVESERQARAKAEKQRADLAREPEELGERLEEAGGATSAQIELNKKREAE 145

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
           +SKLRRDLEEANIQHE+TLANLRKKHNDAVSEMGEQ+DQLNKLK                
Sbjct: 146 LSKLRRDLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVND 205

Query: 105 ------------------------------TKLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                         +K DEANRT+NDLD A+KKL IENSDL+RQ
Sbjct: 206 LRAGLDHLSNEKAAQEKIVKQPQHQLNEVQSKADEANRTLNDLDAAKKKLSIENSDLLRQ 265

Query: 135 LSKVTAD-ARMWKIKY 149
           L +  +  +++ KIK 
Sbjct: 266 LEEAESQVSQLSKIKV 281

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029180|ref|XP_001842471.1| myosin-2 heavy chain [Culex quinquefasciatus] gi|167881574|gb|EDS44957.1| myosin-2 heavy chain [Culex quinquefasciatus]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 123/181 (67%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q RI EL++EVE ERQ+RAKAEKQRADLARELE+ GERLEEAGGATSAQI+LN+KR+ E
Sbjct: 1118 LQGRIDELQDEVESERQARAKAEKQRADLARELEDFGERLEEAGGATSAQIDLNRKRDVE 1177

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKL------------- 107
            ++KLRRDLEEANIQHESTLA+LRKKHNDAV+EM EQ++QLNKLK K              
Sbjct: 1178 LTKLRRDLEEANIQHESTLASLRKKHNDAVAEMAEQVEQLNKLKMKAEHDRANMYNELNK 1237

Query: 108  ---------------------------------DEANRTINDLDVARKKLIIENSDLVRQ 134
                                             DE NRT+ND D ++KKL +ENSDL+R+
Sbjct: 1238 TRSSCDQLARDKAGQEKIAKQLQHSLNHIHGKHDETNRTLNDFDASKKKLSVENSDLLRR 1297

Query: 135  L 135
            L
Sbjct: 1298 L 1298

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702403|ref|XP_001952092.2| PREDICTED: myosin heavy chain, muscle isoform 1 [Acyrthosiphon pisum]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 129/181 (71%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q+RI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1117 LQSRIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1176

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            MSKLRRDLEEANIQHE+TLANLRKKHNDAV+EMG+QIDQLNKLKT               
Sbjct: 1177 MSKLRRDLEEANIQHEATLANLRKKHNDAVAEMGDQIDQLNKLKTKAEKDKCQFLCELND 1236

Query: 106  -------------------------------KLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                           KLDE NRT+ND D A+KKL IENSDL+RQ
Sbjct: 1237 TRASLDHISNEKAQTEKIYKQVQHQLNEVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQ 1296

Query: 135  L 135
            L
Sbjct: 1297 L 1297

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239927|ref|XP_001814139.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 7 [Tribolium castaneum]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 128/181 (70%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1111 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1170

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK                
Sbjct: 1171 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAERDRASIYTELQQ 1230

Query: 106  -------------------------------KLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                           KLDE NRT+ND D A+KKL IENSDL+RQ
Sbjct: 1231 TRSAVEQVGREKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQ 1290

Query: 135  L 135
            L
Sbjct: 1291 L 1291

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239937|ref|XP_001814083.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 6 [Tribolium castaneum]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 128/181 (70%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1111 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1170

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK                
Sbjct: 1171 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAERDRASIYTELQQ 1230

Query: 106  -------------------------------KLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                           KLDE NRT+ND D A+KKL IENSDL+RQ
Sbjct: 1231 TRSAVEQVGREKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQ 1290

Query: 135  L 135
            L
Sbjct: 1291 L 1291

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979376|dbj|BAG30740.1| muscle myosin heavy chain [Papilio xuthus]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/181 (66%), Positives = 129/181 (71%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1114 LQARIEELEEEVESERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1173

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            +SKLRRDLEEANIQHESTLANLRKKHNDAV+EMGEQ+DQLNKLK                
Sbjct: 1174 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMGEQLDQLNKLKAKAEKERSQYFSEVND 1233

Query: 106  -------------------------------KLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                           K DEANRT+NDLD A+KKL IENSDL+RQ
Sbjct: 1234 LRAGLDHLSNEKAAQEKVVKQLQHNLNEVQNKADEANRTLNDLDAAKKKLSIENSDLLRQ 1293

Query: 135  L 135
            L
Sbjct: 1294 L 1294

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197322818|gb|ACH69160.1| myosin heavy chain [Bombyx mori]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/196 (62%), Positives = 137/196 (69%), Gaps = 47/196 (23%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +Q RI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 86  LQGRIEELEEEVESERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 145

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
           +SKLRRDLEEANIQHE+TLANLRKKHNDAVSEMGEQ+DQLNKLK                
Sbjct: 146 LSKLRRDLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVND 205

Query: 105 ------------------------------TKLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                         +K DEANRT+NDLD A+KKL IENSDL+RQ
Sbjct: 206 LRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKADEANRTLNDLDAAKKKLSIENSDLLRQ 265

Query: 135 LSKVTAD-ARMWKIKY 149
           L +  +  +++ KIK 
Sbjct: 266 LEEAESQVSQLSKIKV 281

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239931|ref|XP_001813815.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 5 [Tribolium castaneum]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 128/181 (70%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1111 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1170

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL----------------- 103
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKL                 
Sbjct: 1171 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAEKEKAAYFGELND 1230

Query: 104  -----------------------------KTKLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                         + KLDE NRT+ND D A+KKL IENSDL+RQ
Sbjct: 1231 LRASVDHLANEKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQ 1290

Query: 135  L 135
            L
Sbjct: 1291 L 1291

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011842|gb|EFA08290.1| hypothetical protein TcasGA2_TC005924 [Tribolium castaneum]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 128/181 (70%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1438 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1497

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL----------------- 103
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKL                 
Sbjct: 1498 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAEKEKAAYFGELND 1557

Query: 104  -----------------------------KTKLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                         + KLDE NRT+ND D A+KKL IENSDL+RQ
Sbjct: 1558 LRASVDHLANEKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQ 1617

Query: 135  L 135
            L
Sbjct: 1618 L 1618

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239935|ref|XP_001813466.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 2 [Tribolium castaneum]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 128/181 (70%), Gaps = 46/181 (25%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1111 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1170

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL----------------- 103
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKL                 
Sbjct: 1171 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAEKEKAAYFGELND 1230

Query: 104  -----------------------------KTKLDEANRTINDLDVARKKLIIENSDLVRQ 134
                                         + KLDE NRT+ND D A+KKL IENSDL+RQ
Sbjct: 1231 LRASVDHLANEKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQ 1290

Query: 135  L 135
            L
Sbjct: 1291 L 1291

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0264695	1962	Mhc "Myosin heavy chain" [Dros	0.775	0.061	0.590	1.2e-27
MGI|MGI:1339711	1942	Myh1 "myosin, heavy polypeptid	0.897	0.072	0.427	2.9e-21
UNIPROTKB|F1LRV9	1942	Myh4 "Myosin-4" [Rattus norveg	0.897	0.072	0.427	2.9e-21
UNIPROTKB|F1SS62	1470	MYH1 "Myosin-1" [Sus scrofa (t	0.75	0.079	0.495	3.3e-21
UNIPROTKB|F1PQU7	1938	MYH13 "Myosin-13" [Canis lupus	0.897	0.072	0.427	3.7e-21
UNIPROTKB|Q076A5	1939	MYH4 "Myosin-4" [Canis lupus f	0.993	0.079	0.425	3.7e-21
UNIPROTKB|Q076A3	1940	MYH13 "Myosin-13" [Canis lupus	0.897	0.072	0.427	3.7e-21
UNIPROTKB|F1PMJ2	1859	MYH2 "Myosin-2" [Canis lupus f	0.75	0.062	0.495	4.5e-21
UNIPROTKB|Q076A4	1939	MYH8 "Myosin-8" [Canis lupus f	0.75	0.060	0.495	4.7e-21
UNIPROTKB|Q076A6	1939	MYH1 "Myosin-1" [Canis lupus f	0.75	0.060	0.495	4.7e-21

FB|FBgn0264695 Mhc "Myosin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 72/122 (59%), Positives = 81/122 (66%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          RQ+RAKAEKQ                     TSAQIELNKKREAE
Sbjct:  1110 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1169

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTI-NDLDV 119
             +SKLRRDLEEANIQHESTLANLRKKHNDAV+EM EQ+DQLNKLK K +   +T  N+L+ 
Sbjct:  1170 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQ 1229

Query:   120 AR 121
              R
Sbjct:  1230 TR 1231

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005859 "muscle myosin complex" evidence=ISS;IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0016459 "myosin complex" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0042692 "muscle cell differentiation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0060361 "flight" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0031033 "myosin filament organization" evidence=IMP

MGI|MGI:1339711 Myh1 "myosin, heavy polypeptide 1, skeletal muscle, adult" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 62/145 (42%), Positives = 83/145 (57%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1118 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1177

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1178 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 1237

Query:   117 LDVARKKLIIENSDLVRQLSKVTAD 141
             L  +  ++I ++   + ++ +   D
Sbjct:  1238 L-ASNMEVISKSKGNLEKMCRTLED 1261

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=ISO

GO:0006936 "muscle contraction" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0014704 "intercalated disc" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

GO:0031672 "A band" evidence=IDA

GO:0032982 "myosin filament" evidence=IEA

UNIPROTKB|F1LRV9 Myh4 "Myosin-4" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 62/145 (42%), Positives = 83/145 (57%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1118 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1177

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1178 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 1237

Query:   117 LDVARKKLIIENSDLVRQLSKVTAD 141
             L  +  ++I ++   + ++ +   D
Sbjct:  1238 L-ASNMEVISKSKGNLEKMCRTLED 1261

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0031672 "A band" evidence=IEA

UNIPROTKB|F1SS62 MYH1 "Myosin-1" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 60/121 (49%), Positives = 72/121 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:   646 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 705

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:   706 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 765

Query:   117 L 117
             L
Sbjct:   766 L 766

GO:0031672 "A band" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1PQU7 MYH13 "Myosin-13" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 62/145 (42%), Positives = 82/145 (56%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQ+E+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEASGVTSAQVEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               KLRRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1175 FQKLRRDLEEATLQHEATTAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDD 1234

Query:   117 LDVARKKLIIENSDLVRQLSKVTAD 141
             L  +  + + ++   V ++ +   D
Sbjct:  1235 L-ASNIETVSKSKSNVERMCRTVED 1258

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A5 MYH4 "Myosin-4" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 71/167 (42%), Positives = 92/167 (55%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1175 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDD 1234

Query:   117 L-----DVARKKLIIENS--DLVRQLSKV-TADARMWKIKYETNKPK 155
             L      V++ K  +E +   L  QLS+V T +    ++  E +  K
Sbjct:  1235 LASNMETVSKAKGNLEKTCRTLEDQLSEVKTKEEEQQRLINELSAQK 1281

GO:0030016 "myofibril" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A3 MYH13 "Myosin-13" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 62/145 (42%), Positives = 82/145 (56%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQ+E+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEASGVTSAQVEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               KLRRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1175 FQKLRRDLEEATLQHEATTAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDD 1234

Query:   117 LDVARKKLIIENSDLVRQLSKVTAD 141
             L  +  + + ++   V ++ +   D
Sbjct:  1235 L-ASNIETVSKSKSNVERMCRTVED 1258

GO:0030016 "myofibril" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1PMJ2 MYH2 "Myosin-2" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 4.5e-21, P = 4.5e-21
 Identities = 60/121 (49%), Positives = 72/121 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1117 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1176

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1177 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 1236

Query:   117 L 117
             L
Sbjct:  1237 L 1237

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A4 MYH8 "Myosin-8" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 60/121 (49%), Positives = 72/121 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1116 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1175

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1176 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 1235

Query:   117 L 117
             L
Sbjct:  1236 L 1236

GO:0030016 "myofibril" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A6 MYH1 "Myosin-1" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 60/121 (49%), Positives = 72/121 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLD----EANRTIND 116
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K KL+    E    I+D
Sbjct:  1175 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 1234

Query:   117 L 117
             L
Sbjct:  1235 L 1235

GO:0031672 "A band" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8MJV0	MYH1_HORSE	No assigned EC number	0.6923	0.6410	0.0515	yes	N/A
Q8MJV1	MYH2_HORSE	No assigned EC number	0.6923	0.6410	0.0516	yes	N/A
Q076A6	MYH1_CANFA	No assigned EC number	0.6923	0.6410	0.0515	yes	N/A
Q076A7	MYH2_CANFA	No assigned EC number	0.6923	0.6410	0.0515	yes	N/A
Q9TV61	MYH1_PIG	No assigned EC number	0.6923	0.6410	0.0515	yes	N/A
Q9TV62	MYH4_PIG	No assigned EC number	0.7314	0.6923	0.0557	yes	N/A
Q9TV63	MYH2_PIG	No assigned EC number	0.6923	0.6410	0.0515	yes	N/A
P05661	MYSA_DROME	No assigned EC number	0.6519	0.8653	0.0688	yes	N/A
Q9BE40	MYH1_BOVIN	No assigned EC number	0.5060	0.7564	0.0608	yes	N/A
P13535	MYH8_HUMAN	No assigned EC number	0.7222	0.6602	0.0531	yes	N/A
P13538	MYSS_CHICK	No assigned EC number	0.7252	0.5833	0.0469	yes	N/A
P02565	MYH3_CHICK	No assigned EC number	0.7032	0.5833	0.0469	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	9e-33
pfam04156	186	pfam04156, IncA, IncA protein	7e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score =  121 bits (306), Expect = 9e-33
 Identities = 79/109 (72%), Positives = 94/109 (86%)

Query: 2   QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
           +ARI ELEEE+E ER +RAKAEK RADL+RELEEL ERLEEAGGAT+AQIELNKKREAE+
Sbjct: 45  EARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAEL 104

Query: 62  SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
           +KLR+DLEEAN+QHE  LA LRKKH DA++E+ EQI+QL K K K ++ 
Sbjct: 105 AKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKE 153

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 25/116 (21%), Positives = 49/116 (42%)

Query: 9   EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
            +++E  +   ++ ++Q ++L  ELE+L ER+ E         E  +     +  L   L
Sbjct: 71  PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL 130

Query: 69  EEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKL 124
           E      +     LR+   D   E+ E  ++L +L+  L      I +L    ++L
Sbjct: 131 ESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +  +I ELEE  E         EK ++ L  ELE+L   LE A  A S   +  K  +  
Sbjct: 326 LNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKI 385

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDA------VSEMGEQIDQLNK-----------L 103
           +++ +R ++E   + ++     R    +       + E+ +Q++ L +           L
Sbjct: 386 LAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDL 445

Query: 104 KTKLDEANRTINDLDVARKKLIIENSDLVRQL 135
             +L E  R +++L+ AR++L  E  +L   L
Sbjct: 446 TDQLGEGGRNVHELEKARRRLEAEKDELQAAL 477

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           ++ RI   E  +E   +   +  +    LA E+EEL E +EE      +++E      A 
Sbjct: 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL----ESELEALLNERAS 884

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDL 117
           + +    L     +    L  L  K ++   E+ E  ++L +L+ +L+     I++L
Sbjct: 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 26/129 (20%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 3   ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
           AR+ E+E+++      +   EK+  +L  +  +L E+++        +IE    ++ E+ 
Sbjct: 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE----KEIENLNGKKEELE 867

Query: 63  KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARK 122
           +   +LE A    ES L +L+K+ ++  +++ E   ++ +L+ ++++  + +++L    +
Sbjct: 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927

Query: 123 KLIIENSDL 131
            L  E S++
Sbjct: 928 ALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 2   QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
              I  LE++ ++ R+  A  E+Q  +L  +LEEL  +L+E     +   E  ++ + E+
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 62  SKLRRDLEEANIQH---ESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLD 118
             L  +LEE   +    ES L  L ++     S++ +   Q+  L  +++     +  L+
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 119 VARKKLIIENSDLVRQLSKVTADA 142
             R++L  E  +L+++L +     
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKE 437

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 2   QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
           +A+I +L+EE++  R++  +   +   L  E   L ERLE      +A     +  E ++
Sbjct: 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847

Query: 62  SKLRRDLEEANIQHES---TLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLD 118
            +L  D+E    + E     +  L  +    ++E     + L  L+++L+E +  + +L+
Sbjct: 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907

Query: 119 VARKKL 124
             R +L
Sbjct: 908 SKRSEL 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 2   QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
           +  I ELEE++E   +  A+ EK  A+L +ELEEL E LE+       ++E   ++ + +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----RKELEELSRQISAL 731

Query: 62  SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVAR 121
            K    LE    Q E  +A L K+  +  +E+ E  ++L + + +L EA   I +L+   
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 122 KKLIIENSDLVRQLSKVTADARMWKIKY 149
           ++L  E   L   L ++ A+  +   + 
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEA 819

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 2   QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
           + R+  LE E+E   Q R + E++  +L  E+EEL E+L+E       ++E  +K   E+
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL----EEELEELEKELEEL 861

Query: 62  SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVAR 121
            +   +LE    + E  L  L ++  +   E+ E   +L +LK ++++    + +L+   
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921

Query: 122 KKLIIENSDLVRQL 135
           ++L +E  +L  +L
Sbjct: 922 ERLEVELPELEEEL 935

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +++R+ ELEE++E  R   A+ E Q A L  E+E L  RLE          +  ++   +
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429

Query: 61  MSKLRRDLEEANI-QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDL 117
           + +      +A + + E  L  L+++       + E  ++L + +  LD A R +  L
Sbjct: 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.83
KOG0161|consensus	1930		99.73
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.8
KOG0161|consensus	1930		98.54
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.28
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.0
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.94
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.61
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.43
PRK02224	880	chromosome segregation protein; Provisional	96.23
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.21
PRK11637	428	AmiB activator; Provisional	96.08
PRK04863	1486	mukB cell division protein MukB; Provisional	96.08
PRK09039	343	hypothetical protein; Validated	96.02
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.7
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.37
KOG0977|consensus	546		95.24
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.14
PRK02224	880	chromosome segregation protein; Provisional	94.92
PRK04778	569	septation ring formation regulator EzrA; Provision	94.9
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.85
KOG0612|consensus	1317		94.82
PHA02562	562	46 endonuclease subunit; Provisional	94.71
KOG0995|consensus	581		94.46
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.37
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.21
KOG0971|consensus	1243		94.03
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.99
PRK11637	428	AmiB activator; Provisional	93.96
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.86
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	93.79
KOG0996|consensus	1293		93.65
KOG4674|consensus	1822		93.61
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.61
KOG0977|consensus	546		93.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.13
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.93
KOG0996|consensus	1293		92.74
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.56
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	92.46
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.28
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	91.37
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	90.41
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.09
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	89.79
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.75
KOG0976|consensus	1265		89.07
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.44
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.35
KOG0250|consensus	1074		87.57
PRK04778	569	septation ring formation regulator EzrA; Provision	87.38
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.03
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	86.36
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	85.87
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	85.5
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.32
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	84.81
KOG0964|consensus	1200		84.43
KOG0980|consensus	980		84.16
KOG0250|consensus	1074		84.02
KOG4674|consensus	1822		83.67
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	83.64
KOG4643|consensus	1195		83.59
COG4942	420	Membrane-bound metallopeptidase [Cell division and	82.93
KOG0980|consensus	980		82.64
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	82.55
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	82.39
COG4026	290	Uncharacterized protein containing TOPRIM domain,	82.35
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	81.86
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	80.88
KOG1029|consensus	1118		80.76

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.83  E-value=4.6e-22  Score=179.79  Aligned_cols=105  Identities=77%  Similarity=1.008  Sum_probs=0.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16513          1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (156)
Q Consensus         1 l~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~   80 (156)
                      |+++|.+|+++|++++.+|+|+||.|++|..||++|..+|++.+++++++.++++++|.+|..|++.|++....++.++.
T Consensus        44 lq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~  123 (859)
T PF01576_consen   44 LQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLA  123 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513         81 NLRKKHNDAVSEMGEQIDQLNKLKT  105 (156)
Q Consensus        81 ~~k~k~~~~~~el~~q~~~l~r~k~  105 (156)
                      .+|+||++.+.+|+.++++++|.++
T Consensus       124 ~lrkkh~~~~~eL~eqle~lqk~k~  148 (859)
T PF01576_consen  124 ELRKKHQDAVAELNEQLEQLQKQKA  148 (859)
T ss_dssp             -------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0161|consensus

Probab=99.73  E-value=4.8e-16  Score=147.54  Aligned_cols=105  Identities=64%  Similarity=0.900  Sum_probs=102.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16513          1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (156)
Q Consensus         1 l~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~   80 (156)
                      |+++|.+|.++++.++..|+|++|.+++|..++++|..+|++..+.+.++.+++++++.++..+++.+++.+..++..+.
T Consensus      1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513         81 NLRKKHNDAVSEMGEQIDQLNKLKT  105 (156)
Q Consensus        81 ~~k~k~~~~~~el~~q~~~l~r~k~  105 (156)
                      .++.+|++.+.++..+++++++.|.
T Consensus      1182 ~lr~~~~~~~~el~~qle~l~~~k~ 1206 (1930)
T KOG0161|consen 1182 ELRKKHADSLAELQEQLEQLQKDKA 1206 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.80  E-value=8.2e-10  Score=100.66  Aligned_cols=142  Identities=31%  Similarity=0.472  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL   82 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~   82 (156)
                      ..|.+|.++|+++++.++++||.|+.|..++++|..+|+.+++.+...++.+++++.++.+++.++++..+.... +...
T Consensus       131 ~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~e-l~~~  209 (859)
T PF01576_consen  131 DAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNE-LTEQ  209 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999995 9999


Q ss_pred             HHhhHHHHHHHHHHH-------HHHHHHHH----HhHHHHhhHHH-------HHHHHHHHHHHHH--------------H
Q psy16513         83 RKKHNDAVSEMGEQI-------DQLNKLKT----KLDEANRTIND-------LDVARKKLIIENS--------------D  130 (156)
Q Consensus        83 k~k~~~~~~el~~q~-------~~l~r~k~----~lee~~r~~~e-------l~~~~~~l~~E~~--------------e  130 (156)
                      +.|+...+.+|..++       .++.|.+.    +++++++.+.+       |.+.++.++++++              +
T Consensus       210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~  289 (859)
T PF01576_consen  210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSE  289 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            999998666666654       66666665    66666665544       6666677776663              7


Q ss_pred             HHHHHHHHHHHHHHH
Q psy16513        131 LVRQLSKVTADARMW  145 (156)
Q Consensus       131 l~r~l~e~e~~~~~~  145 (156)
                      +.++|+.++.++.+|
T Consensus       290 l~~qlsk~~~El~~~  304 (859)
T PF01576_consen  290 LERQLSKLNAELEQW  304 (859)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHhhHHHHH
Confidence            777777788877777

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0161|consensus

Probab=98.54  E-value=1.1e-05  Score=78.31  Aligned_cols=140  Identities=27%  Similarity=0.428  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16513          2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN   81 (156)
Q Consensus         2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~   81 (156)
                      ...++++++.++.......++|+.+..|..|++++...++..........+..++++.-+++|++..+.....+.....+
T Consensus      1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e 1464 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRE 1464 (1930)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             HHHhhH------HHHHHHHHHHHHHHHHHH-----------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         82 LRKKHN------DAVSEMGEQIDQLNKLKT-----------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD  141 (156)
Q Consensus        82 ~k~k~~------~~~~el~~q~~~l~r~k~-----------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~  141 (156)
                      .+....      ..++++..+++++.|.+.           .+.++.+.+.++...++.+..++.+|+.+|.+++..
T Consensus      1465 ~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1465 LRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665544      377888888887777665           667777888889999999999999999999999985

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.28  E-value=0.038  Score=40.32  Aligned_cols=121  Identities=18%  Similarity=0.327  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHH-
Q psy16513         30 ARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMG---EQIDQLNKLKT-  105 (156)
Q Consensus        30 ~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~---~q~~~l~r~k~-  105 (156)
                      ..|.+......+.+-........-....+.++..|..++.-....++. +......+...+++..   ..+++|+|--. 
T Consensus         6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~-~~~~l~~~k~~lee~~~~~~~~E~l~rriq~   84 (143)
T PF12718_consen    6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK-LEEQLKEAKEKLEESEKRKSNAEQLNRRIQL   84 (143)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhHHHHHhhHHH
Confidence            334444444444444333333344444555555555555555544442 3222222222222222   22334443332 


Q ss_pred             ---HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513        106 ---KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET  151 (156)
Q Consensus       106 ---~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~  151 (156)
                         .++.+...+.+....++....-.+.+.|.+..++.....|-.||+.
T Consensus        85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence               6666777788888888888888899999999999999999999985

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.16  E-value=0.094  Score=42.47  Aligned_cols=64  Identities=30%  Similarity=0.498  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI   73 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~   73 (156)
                      ..|.++...|+....-+++++-....+..+++++...++..       ...+...+.++..++..+++.+.
T Consensus        54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-------~~~~~~le~el~~lrk~ld~~~~  117 (312)
T PF00038_consen   54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-------LAERKDLEEELESLRKDLDEETL  117 (312)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhhh
Confidence            34556666666666666777777777777777776666555       22333344444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.00  E-value=0.25  Score=46.41  Aligned_cols=20  Identities=35%  Similarity=0.456  Sum_probs=7.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHH
Q psy16513         21 KAEKQRADLARELEELGERL   40 (156)
Q Consensus        21 k~EK~k~~l~~Ele~l~~~l   40 (156)
                      ++++....+..+++.+..++
T Consensus       326 ~~~~~~~~l~~~~~~l~~~~  345 (1164)
T TIGR02169       326 KLEAEIDKLLAEIEELEREI  345 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.94  E-value=0.13  Score=40.42  Aligned_cols=44  Identities=9%  Similarity=0.176  Sum_probs=31.0

Q ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513        107 LDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus       107 lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e  150 (156)
                      +..+...+.+.......+...+..|.+.+..++..+..|+.+|.
T Consensus       178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~  221 (237)
T PF00261_consen  178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555667999999999999999999986

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.61  E-value=0.64  Score=43.68  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy16513        121 RKKLIIENSDLVRQLSKVTADA  142 (156)
Q Consensus       121 ~~~l~~E~~el~r~l~e~e~~~  142 (156)
                      +..+..++..+..++..+...+
T Consensus       471 l~~~~~~l~~l~~~l~~l~~~~  492 (1164)
T TIGR02169       471 LYDLKEEYDRVEKELSKLQREL  492 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.43  E-value=0.41  Score=39.29  Aligned_cols=26  Identities=23%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513        126 IENSDLVRQLSKVTADARMWKIKYET  151 (156)
Q Consensus       126 ~E~~el~r~l~e~e~~~~~~r~k~e~  151 (156)
                      .|.+.+.+.+..++.+...|++|||.
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~  269 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEK  269 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34468888888889999999999984

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK02224 chromosome segregation protein; Provisional

Probab=96.23  E-value=0.98  Score=41.68  Aligned_cols=49  Identities=20%  Similarity=0.189  Sum_probs=18.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE   70 (156)
Q Consensus        22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee   70 (156)
                      +......+..+++.+...+................++....+++..+.+
T Consensus       284 ~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~  332 (880)
T PRK02224        284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE  332 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444433222222222223344444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.21  E-value=0.51  Score=38.17  Aligned_cols=62  Identities=29%  Similarity=0.318  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q psy16513          8 LEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE   69 (156)
Q Consensus         8 L~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~le   69 (156)
                      +...++..+.-....-..+..+..++..|...++.........+.....+..++.+++...+
T Consensus        80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he  141 (312)
T PF00038_consen   80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE  141 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence            33444444433333444455555555555555555544444433333444444444444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=96.08  E-value=0.77  Score=39.07  Aligned_cols=74  Identities=14%  Similarity=0.271  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES   77 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~   77 (156)
                      .+.++..++.........+.+....+..++..+..+|..+...-.....-....+.++..++..+.........
T Consensus        48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~  121 (428)
T PRK11637         48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA  121 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555554444445555555555555555554444433333333344444555555554444444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.08  E-value=1.7  Score=42.88  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=43.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHH-------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513         82 LRKKHNDAVSEMGEQIDQLNKLKT-------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus        82 ~k~k~~~~~~el~~q~~~l~r~k~-------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e  150 (156)
                      ....++..+..+...+..+.+++.       -.+++...+..+......+..++.++...+..++..+.+.+..|.
T Consensus       405 el~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~  480 (1486)
T PRK04863        405 ALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ  480 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555555555       334566666667777777777777777777777777777766654

>PRK09039 hypothetical protein; Validated

Probab=96.02  E-value=0.73  Score=38.33  Aligned_cols=11  Identities=0%  Similarity=0.341  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHh
Q psy16513        139 TADARMWKIKY  149 (156)
Q Consensus       139 e~~~~~~r~k~  149 (156)
                      ..++..||..|
T Consensus       189 ~~~l~~~~~~~  199 (343)
T PRK09039        189 VQELNRYRSEF  199 (343)
T ss_pred             HHHHHHhHHHH
Confidence            44566777666

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.70  E-value=0.97  Score=37.21  Aligned_cols=132  Identities=19%  Similarity=0.287  Sum_probs=63.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513         18 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI   97 (156)
Q Consensus        18 ~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~   97 (156)
                      .+..++.....|..+...|...+..+.+...........+..++..++....+...--...+..++..+...-.++...-
T Consensus       150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k  229 (325)
T PF08317_consen  150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKK  229 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555556666666555555555555444445566666666666665543333346556555444333322222


Q ss_pred             HHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q psy16513         98 DQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKV----TADARMWKIKY  149 (156)
Q Consensus        98 ~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~----e~~~~~~r~k~  149 (156)
                      ..+...+.++..++..+.++...+..+..+..++.+.++..    ..++..++.+|
T Consensus       230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~  285 (325)
T PF08317_consen  230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV  285 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            22222233334444444445555555555554444444322    23344444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.37  E-value=2.7  Score=40.32  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=13.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513        111 NRTINDLDVARKKLIIENSDLVRQLSKVTAD  141 (156)
Q Consensus       111 ~r~~~el~~~~~~l~~E~~el~r~l~e~e~~  141 (156)
                      ...+.++...+..+..+..++.+++.++...
T Consensus       869 ~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~  899 (1163)
T COG1196         869 EAEKEELEDELKELEEEKEELEEELRELESE  899 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444443

>KOG0977|consensus

Probab=95.24  E-value=1.4  Score=38.91  Aligned_cols=82  Identities=22%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR   83 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k   83 (156)
                      .+..++-.+...++-...+|-+..+|..|..-|..+|..+-+..-.-.-++..++..+..|..+|+-....+...+.+.+
T Consensus       149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~  228 (546)
T KOG0977|consen  149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEER  228 (546)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence            44555555555555556666666666666666555555544433333333333444455555555555544444444443


Q ss_pred             Hh
Q psy16513         84 KK   85 (156)
Q Consensus        84 ~k   85 (156)
                      .+
T Consensus       229 ~~  230 (546)
T KOG0977|consen  229 RK  230 (546)
T ss_pred             HH
Confidence            33

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.14  E-value=1.1  Score=34.46  Aligned_cols=105  Identities=20%  Similarity=0.294  Sum_probs=74.6

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH
Q psy16513         45 GATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH-------NDAVSEMGEQIDQLNKLKTKLDEANRTINDL  117 (156)
Q Consensus        45 ~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~-------~~~~~el~~q~~~l~r~k~~lee~~r~~~el  117 (156)
                      +.+.....+.+.+-.++.+++...+.....+.. +..--.++       ...+.+|..++.+-.+-+..+..++..+..+
T Consensus        20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~e-i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~   98 (201)
T PF13851_consen   20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAE-ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKEL   98 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667777777777777766666555553 33333333       3466777777777667776777777788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513        118 DVARKKLIIENSDLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus       118 ~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e  150 (156)
                      ...+..|.-+...|...+...+.+...|..+|+
T Consensus        99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen   99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888887

>PRK02224 chromosome segregation protein; Provisional

Probab=94.92  E-value=3.1  Score=38.44  Aligned_cols=10  Identities=20%  Similarity=0.208  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q psy16513         89 AVSEMGEQID   98 (156)
Q Consensus        89 ~~~el~~q~~   98 (156)
                      .+.++..++.
T Consensus       628 ~l~~~r~~i~  637 (880)
T PRK02224        628 RLAEKRERKR  637 (880)
T ss_pred             HHHHHHHHHH
Confidence            3444444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.90  E-value=2.6  Score=37.38  Aligned_cols=39  Identities=31%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE   41 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le   41 (156)
                      .+|..|-+.++.+..++..+++....+..-+..+..+..
T Consensus       289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~  327 (569)
T PRK04778        289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK  327 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            356666666667777777776666665555555544443

>TIGR00606 rad50 rad50

Probab=94.85  E-value=4.2  Score=39.60  Aligned_cols=40  Identities=10%  Similarity=0.170  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513         57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI   97 (156)
Q Consensus        57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~   97 (156)
                      ++.++..+...++......+. +.....++...+..|...+
T Consensus       827 le~ei~~~~~el~~l~~~~e~-l~~e~e~~~~eI~~Lq~ki  866 (1311)
T TIGR00606       827 VNQEKQEKQHELDTVVSKIEL-NRKLIQDQQEQIQHLKSKT  866 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            444455555555555444442 4444444455555554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0612|consensus

Probab=94.82  E-value=4  Score=39.22  Aligned_cols=85  Identities=22%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL   82 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~   82 (156)
                      ..+.+..+.+..+...+.+++..-+++..+++++....+.+.+...-...+++.++.....++.+.++...-.. ...++
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~-~~~e~  572 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRK-HSKEL  572 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhh-hhhhh
Confidence            34556666677777777777777777777777776666666666666666666666666666655555544444 23444


Q ss_pred             HHhhHH
Q psy16513         83 RKKHND   88 (156)
Q Consensus        83 k~k~~~   88 (156)
                      ...++.
T Consensus       573 ~~~iq~  578 (1317)
T KOG0612|consen  573 SKQIQQ  578 (1317)
T ss_pred             hHHHHH
Confidence            444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.71  E-value=2.6  Score=36.67  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16513          7 ELEEEVEVERQSRAKAEKQRADLARELEEL   36 (156)
Q Consensus         7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l   36 (156)
                      ++..+++........++.+...+..++.++
T Consensus       217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l  246 (562)
T PHA02562        217 RKQNKYDELVEEAKTIKAEIEELTDELLNL  246 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>KOG0995|consensus

Probab=94.46  E-value=3.3  Score=36.66  Aligned_cols=130  Identities=16%  Similarity=0.272  Sum_probs=62.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH---HHHHH
Q psy16513         17 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND---AVSEM   93 (156)
Q Consensus        17 ~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~---~~~el   93 (156)
                      ..+.++++....+..++++|......+-.--.. .+....++.-+.+.++.|.....-+.+.+..++.|.+.   .++.+
T Consensus       221 Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e-~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l  299 (581)
T KOG0995|consen  221 ELKHRLEKYFTSIANEIEDLKKTNRELEEMINE-REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML  299 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            445677777777777777776654443221111 11112234444444444444444444455555544433   22222


Q ss_pred             HH----HHHHHHHHHHHhHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         94 GE----QIDQLNKLKTKLDEANRTIND---LDVARKKLIIENSDLVRQLSKVTADARMWKI  147 (156)
Q Consensus        94 ~~----q~~~l~r~k~~lee~~r~~~e---l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~  147 (156)
                      .+    ..+...+++.+.++++..+.-   -.....++.+|+..|.|.|.+.+.++..|..
T Consensus       300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k  360 (581)
T KOG0995|consen  300 KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK  360 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    223333444444444443322   2335556666666666666666666655543

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.37  E-value=3.7  Score=36.91  Aligned_cols=42  Identities=24%  Similarity=0.416  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG   44 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~   44 (156)
                      .++..|.+++..++.-+...-..-..|.+.|..|..++....
T Consensus        29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~   70 (617)
T PF15070_consen   29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP   70 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            456677777777777666666667777777777776665443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.21  E-value=3.7  Score=36.30  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy16513          2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG   44 (156)
Q Consensus         2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~   44 (156)
                      +..+++.....+.+......+++....|..+++.|..+|....
T Consensus       142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~  184 (546)
T PF07888_consen  142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE  184 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666667777777777777777777777777765443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0971|consensus

Probab=94.03  E-value=5.4  Score=37.45  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q psy16513         25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH   86 (156)
Q Consensus        25 ~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~   86 (156)
                      .+.....|++|....++-++-.+-..++..-.+..++.-++-+++++...++-.-+++-.+.
T Consensus       298 ~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG  359 (1243)
T KOG0971|consen  298 AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG  359 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34455556666666666666666666666666777777777778877777765444554443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.99  E-value=4.8  Score=36.74  Aligned_cols=144  Identities=26%  Similarity=0.255  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC----------ccHHH-HHHHHHHHHHHHHHHHHH---H
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG----------ATSAQ-IELNKKREAEMSKLRRDL---E   69 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~----------~~~~~-~~~~kk~E~el~~l~~~l---e   69 (156)
                      .+..|+-.|-.+++.|..+|++...-...--.   +=+.+..          ..+.+ -..++.+|.++..|+++|   +
T Consensus       489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~---ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke  565 (697)
T PF09726_consen  489 SLQQLEKRLAEERRQRASLEKQLQEERKARKE---EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE  565 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777777777754443322111   1011111          11111 112234788888888765   5


Q ss_pred             HHHHhhHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         70 EANIQHESTLANLRKK---HNDAVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADA  142 (156)
Q Consensus        70 e~~~~~e~~~~~~k~k---~~~~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~  142 (156)
                      +..+..+..+..++.-   .....+.|..-+..++.-..    -|..=+|-+.+|.+.+.....++.-++.++-.-+.++
T Consensus       566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei  645 (697)
T PF09726_consen  566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEI  645 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666556556553   12345555555555544433    3334456666777777777777777777777777777


Q ss_pred             HHHHHHhh
Q psy16513        143 RMWKIKYE  150 (156)
Q Consensus       143 ~~~r~k~e  150 (156)
                      .+++.|..
T Consensus       646 ~~lk~ki~  653 (697)
T PF09726_consen  646 EELKAKIA  653 (697)
T ss_pred             HHHHHHHH
Confidence            77777654

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=93.96  E-value=3.5  Score=35.08  Aligned_cols=73  Identities=16%  Similarity=0.148  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH   75 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~   75 (156)
                      ..|..+...+...+.....++.....+..++..+...|......-.....-....+.++..++..++.....+
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555554444444444444444444444444444444333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.86  E-value=4.4  Score=35.86  Aligned_cols=14  Identities=21%  Similarity=0.294  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHH
Q psy16513        129 SDLVRQLSKVTADA  142 (156)
Q Consensus       129 ~el~r~l~e~e~~~  142 (156)
                      ..|..+|.++..++
T Consensus       335 aql~~qLad~~l~l  348 (546)
T PF07888_consen  335 AQLKLQLADASLEL  348 (546)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45555555554444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=93.79  E-value=0.37  Score=33.10  Aligned_cols=33  Identities=42%  Similarity=0.601  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513         11 EVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus        11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      .|..++..|..++..+..+..|+++|++.|.+-
T Consensus         2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeE   34 (100)
T PF06428_consen    2 ELEEERERREEAEQEKEQIESELEELTASLFEE   34 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788999999999999999999999999443

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>KOG0996|consensus

Probab=93.65  E-value=7  Score=37.52  Aligned_cols=24  Identities=17%  Similarity=0.106  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH
Q psy16513         11 EVEVERQSRAKAEKQRADLARELE   34 (156)
Q Consensus        11 ~le~e~~~r~k~EK~k~~l~~Ele   34 (156)
                      .+.....-..|++|+.-....+.+
T Consensus       406 ~lK~~~~k~kKleke~ek~~~~~~  429 (1293)
T KOG0996|consen  406 KLKRLTSKIKKLEKEIEKARRKKS  429 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            333333333333333333333333

>KOG4674|consensus

Probab=93.61  E-value=8.8  Score=38.54  Aligned_cols=140  Identities=18%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHH
Q psy16513         11 EVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAV   90 (156)
Q Consensus        11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~   90 (156)
                      .+++++.-.--+-.....|..+++.|..+...++..-...+-....++......+..++.....+...++.++.+++..+
T Consensus       746 ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~  825 (1822)
T KOG4674|consen  746 ELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKS  825 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444433333333344566666666666666665555555566667777788888888777777777888888777655


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy16513         91 SEMGEQIDQLNKLKTKLDEANRTIND-------LDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNK  153 (156)
Q Consensus        91 ~el~~q~~~l~r~k~~lee~~r~~~e-------l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~~~  153 (156)
                      .++.+-...+.   ..+..+...+.+       +...+..++.....+.-.+.+++..+.-....|.+..
T Consensus       826 ~~~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~  892 (1822)
T KOG4674|consen  826 SDLRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLD  892 (1822)
T ss_pred             HHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence            54444332211   134444444444       4444444444555555555555555555555554443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.61  E-value=2.6  Score=32.42  Aligned_cols=127  Identities=23%  Similarity=0.322  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL   82 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~   82 (156)
                      .-|..|.+++...++.-...++.-.++..|...|..-|              ++.+.++.+|++.+........ .+..+
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL--------------~~a~~e~~eL~k~L~~y~kdK~-~L~~~   91 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL--------------KKAEEEVEELRKQLKNYEKDKQ-SLQNL   91 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            45788999999999988888888888888888887766              3455666677777777666666 36666


Q ss_pred             HHhhHH---HHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q psy16513         83 RKKHND---AVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLII---------------ENSDLVRQLSKVTADARM  144 (156)
Q Consensus        83 k~k~~~---~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~---------------E~~el~r~l~e~e~~~~~  144 (156)
                      +.++..   .+..+.-..+.|.   .++..+.+.+.+|.......-.               -+..+...|+..++++..
T Consensus        92 k~rl~~~ek~l~~Lk~e~evL~---qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e  168 (201)
T PF13851_consen   92 KARLKELEKELKDLKWEHEVLE---QRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE  168 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666543   2333332222211   1333333334443333333222               225777788888888887


Q ss_pred             HHH
Q psy16513        145 WKI  147 (156)
Q Consensus       145 ~r~  147 (156)
                      |-+
T Consensus       169 vl~  171 (201)
T PF13851_consen  169 VLA  171 (201)
T ss_pred             HHH
Confidence            744

>KOG0977|consensus

Probab=93.15  E-value=5.8  Score=35.11  Aligned_cols=47  Identities=26%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         26 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN   72 (156)
Q Consensus        26 k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~   72 (156)
                      +.-+..|+..+..-|+++....+..+.-.+++..++.+++..+++..
T Consensus        87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~  133 (546)
T KOG0977|consen   87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAE  133 (546)
T ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444445555555555555443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.13  E-value=3.6  Score=32.63  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513        114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIKY  149 (156)
Q Consensus       114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~  149 (156)
                      +.++......++.+...+...+...+..+...+...
T Consensus       112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~  147 (239)
T COG1579         112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL  147 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.93  E-value=7.3  Score=35.61  Aligned_cols=125  Identities=22%  Similarity=0.320  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHH----------------------HhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Q psy16513          6 YELEEEVEVERQSRAKAE----------------------KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSK   63 (156)
Q Consensus         6 ~EL~e~le~e~~~r~k~E----------------------K~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~   63 (156)
                      ..++-+|-++++.|...|                      .-+.+|..|+.-|..+|       ..-++.+..+|.++.+
T Consensus       505 ~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el-------k~kee~~~~~e~~~~~  577 (697)
T PF09726_consen  505 ASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL-------KQKEEQIRELESELQE  577 (697)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            467777878887765432                      23456666666666666       4445666778888877


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         64 LRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKV  138 (156)
Q Consensus        64 l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~  138 (156)
                      ++.-.-+.....+. +-.-..-+++...-|+..+..-.|+|.    -|.|++|++..+...+.+-..|+.+|..-+.+.
T Consensus       578 lr~~~~e~~~~~e~-L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  578 LRKYEKESEKDTEV-LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77652222223332 222223344556678888888889997    899999999999999999999988776655544

; GO: 0016021 integral to membrane

>KOG0996|consensus

Probab=92.74  E-value=9.8  Score=36.61  Aligned_cols=68  Identities=24%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy16513          5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIEL----------NKKREAEMSKLRRDLEEAN   72 (156)
Q Consensus         5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~----------~kk~E~el~~l~~~lee~~   72 (156)
                      +.++++.+-..+..-.-++-.+..+..++..+...+..+-......+..          -+-++..+.+++++++++.
T Consensus       801 ~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q  878 (1293)
T KOG0996|consen  801 LHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ  878 (1293)
T ss_pred             HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555556666666666666433333322222222          1224555666666666663

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.56  E-value=4.7  Score=32.47  Aligned_cols=76  Identities=17%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q psy16513         12 VEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN   87 (156)
Q Consensus        12 le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~   87 (156)
                      +.+-...=..+.+.+.++..++++|-.+++++++......+-..+...++..++.++++..-.....-..+..+..
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR  108 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR  108 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456778888999999999999999988777777777888888999999998888877765555555544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=92.46  E-value=11  Score=36.40  Aligned_cols=21  Identities=29%  Similarity=0.264  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHH
Q psy16513          9 EEEVEVERQSRAKAEKQRADL   29 (156)
Q Consensus         9 ~e~le~e~~~r~k~EK~k~~l   29 (156)
                      ..++......-.+.+.....+
T Consensus       673 ~~~l~~~~~~~~~~~~~~~~~  693 (1163)
T COG1196         673 EEELAELEAQLEKLEEELKSL  693 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.28  E-value=5.6  Score=32.74  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=33.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q psy16513         20 AKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDA   89 (156)
Q Consensus        20 ~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~   89 (156)
                      ..++.....|..+..-|...+.-+.+........-..+..++..|+...++...--...+..+|.++...
T Consensus       147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~  216 (312)
T smart00787      147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKL  216 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHH
Confidence            3344444445555555555554444444444444444555555555555554332222344455444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=91.37  E-value=15  Score=35.67  Aligned_cols=95  Identities=19%  Similarity=0.358  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR   83 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k   83 (156)
                      +++.+...+.........+|+........++.+...+..+       .-..+..+..+..++.............+..-+
T Consensus       608 ~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  680 (1201)
T PF12128_consen  608 RLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQA-------EQELKQAEQDLQRLKNEREQLKQEIEEAKEERK  680 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555444444555555555555555555544333       223344556667777777777777776677777


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHH
Q psy16513         84 KKHNDAVSEMGEQIDQLNKLKT  105 (156)
Q Consensus        84 ~k~~~~~~el~~q~~~l~r~k~  105 (156)
                      .++..++..+...+..+.....
T Consensus       681 ~~~~~~l~~l~~~l~~~~~e~~  702 (1201)
T PF12128_consen  681 EQIEEQLNELEEELKQLKQELE  702 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777766654433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=90.41  E-value=13  Score=33.49  Aligned_cols=48  Identities=29%  Similarity=0.424  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513         27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQ   74 (156)
Q Consensus        27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~   74 (156)
                      ..|..|++.|..++............++...+..+.++.+.+++....
T Consensus        90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~  137 (617)
T PF15070_consen   90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQ  137 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555554443333333444455566666666666555443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.09  E-value=6.7  Score=29.74  Aligned_cols=19  Identities=37%  Similarity=0.426  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q psy16513        113 TINDLDVARKKLIIENSDL  131 (156)
Q Consensus       113 ~~~el~~~~~~l~~E~~el  131 (156)
                      .++-+...+.+|+.|+.+|
T Consensus       159 ~~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  159 QLNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444666666677776655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=89.79  E-value=17  Score=33.75  Aligned_cols=71  Identities=23%  Similarity=0.295  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513          6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE   76 (156)
Q Consensus         6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e   76 (156)
                      .++..+|+.++-.=...+....-|..+++.|...|+.......-.....-....+.+.+...+.+..-.++
T Consensus       318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d  388 (775)
T PF10174_consen  318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD  388 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666665666777788888888888888777654444444444455555555555544444444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.75  E-value=5.6  Score=28.19  Aligned_cols=42  Identities=31%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513          2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus         2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      ++.|.-++.++-+++.--.+++..|..+..|+-.|....+.+
T Consensus        22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777888888888888888889999999988888888766

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0976|consensus

Probab=89.07  E-value=20  Score=33.57  Aligned_cols=41  Identities=24%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513          2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE   42 (156)
Q Consensus         2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~   42 (156)
                      |..+.+++-++-.++..++.++-++.+-.-|++.+.+++..
T Consensus       112 Qn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~  152 (1265)
T KOG0976|consen  112 QNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK  152 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            44555566666666666666666666666666666665533

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.44  E-value=20  Score=32.91  Aligned_cols=15  Identities=53%  Similarity=0.674  Sum_probs=9.1

Q ss_pred             hHHHHHHHHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQ   17 (156)
Q Consensus         3 ~~i~EL~e~le~e~~   17 (156)
                      .+|.+|+.++...+.
T Consensus        34 ~~i~~l~~elk~~~~   48 (717)
T PF09730_consen   34 QRILELENELKQLRQ   48 (717)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            466777777654443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.35  E-value=13  Score=30.58  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513          9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus         9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      ...++.......++...+..|..++..|.....+.
T Consensus       169 ~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~  203 (325)
T PF08317_consen  169 DKQLEQLDELLPKLRERKAELEEELENLKQLVEEI  203 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344444445555555555555555555544443

>KOG0250|consensus

Probab=87.57  E-value=27  Score=33.40  Aligned_cols=45  Identities=9%  Similarity=0.179  Sum_probs=23.5

Q ss_pred             HhHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513        106 KLDEANRTI-NDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus       106 ~lee~~r~~-~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e  150 (156)
                      ++.+++... .++...+...+.+...|.+++++++.+++..|.++.
T Consensus       380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~  425 (1074)
T KOG0250|consen  380 QIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN  425 (1074)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333 334445555555555666666666666555555543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=87.38  E-value=20  Score=31.76  Aligned_cols=52  Identities=10%  Similarity=0.098  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513         25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE   76 (156)
Q Consensus        25 ~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e   76 (156)
                      .-..+...++.|-..|+.-..+.....+...+....+..++...........
T Consensus       283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~  334 (569)
T PRK04778        283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID  334 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777777766666666666666666665555555554444444

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.03  E-value=7.2  Score=30.78  Aligned_cols=69  Identities=25%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513         28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI   97 (156)
Q Consensus        28 ~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~   97 (156)
                      ++...+++++..|++....+....+-...++.++.+++-.+........ .+..+++++-..+..|....
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s-~LeE~~~~l~~ev~~L~~r~  200 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS-RLEEMLKKLPGEVYDLKKRW  200 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhchhHHHHHHHHH
Confidence            5555555555555555554444444444455555555555555444444 34555555444444444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=86.36  E-value=22  Score=31.23  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL   40 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l   40 (156)
                      ..|..|.+.|+..+.....+++.+..+..+.+.....+
T Consensus       179 ~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~  216 (522)
T PF05701_consen  179 KEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEW  216 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666655555555444444

Several sequences in this family are described as being myosin heavy chain-like.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=85.87  E-value=36  Score=33.10  Aligned_cols=12  Identities=8%  Similarity=0.415  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHH
Q psy16513        130 DLVRQLSKVTAD  141 (156)
Q Consensus       130 el~r~l~e~e~~  141 (156)
                      .+..++..++.+
T Consensus       775 ~l~~~i~~L~~~  786 (1201)
T PF12128_consen  775 QLKQEIEQLEKE  786 (1201)
T ss_pred             HHHHHHHHHHHH
Confidence            334444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=85.50  E-value=17  Score=28.92  Aligned_cols=51  Identities=22%  Similarity=0.225  Sum_probs=19.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA   71 (156)
Q Consensus        21 k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~   71 (156)
                      ..-+.-..+..+++.+...+..+....-.......+.+.++.+++.++...
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~   78 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA   78 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444443333333333333333444444444443333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.32  E-value=15  Score=28.21  Aligned_cols=60  Identities=25%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q psy16513          6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE   69 (156)
Q Consensus         6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~le   69 (156)
                      ..|.++.-.+++.--.+|-.-+.|..++.+|+.++..++    -....-+-++.++.+|+..+-
T Consensus        18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~   77 (193)
T PF14662_consen   18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAK   77 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666666666777888888888888887663    222344556777777664433

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=84.81  E-value=31  Score=31.53  Aligned_cols=107  Identities=24%  Similarity=0.276  Sum_probs=63.5

Q ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHH
Q psy16513         40 LEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDV  119 (156)
Q Consensus        40 le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~  119 (156)
                      .+.+...-+-.+..++.+|..   .++.|++..+.|...+..+..-|+..+..|......|.+.-   ..+.-.+.....
T Consensus       117 ae~Lraala~ae~~R~~lEE~---~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r~~e~~  190 (739)
T PF07111_consen  117 AEELRAALAGAEVVRKNLEEG---SQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSL---ESLETRRAGEAK  190 (739)
T ss_pred             HHHHHHHHhhHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            333333334444455556533   48899999999999999999999999999988887664322   222222323344


Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHhhhcC
Q psy16513        120 ARKKLIIENSDLVRQLSKV----TAD---ARMWKIKYETNK  153 (156)
Q Consensus       120 ~~~~l~~E~~el~r~l~e~----e~~---~~~~r~k~e~~~  153 (156)
                      .+.-.+.+.+.|..+|++.    +++   +.+.| +|-++-
T Consensus       191 ~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR-~YvGeq  230 (739)
T PF07111_consen  191 ELAEAQREADLLREQLSKTQEELEAQVTLVEQLR-KYVGEQ  230 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhhh
Confidence            4444444555555555443    333   45554 455443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0964|consensus

Probab=84.43  E-value=39  Score=32.29  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Q psy16513          9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA   59 (156)
Q Consensus         9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~   59 (156)
                      .++.+....-..++=|.+..|.-.+.+|+.++..-........+...+...
T Consensus       285 ~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~  335 (1200)
T KOG0964|consen  285 REEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD  335 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence            333444444445555556667777777777665444443333333333333

>KOG0980|consensus

Probab=84.16  E-value=37  Score=31.89  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         89 AVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWK  146 (156)
Q Consensus        89 ~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r  146 (156)
                      ...+|+++++.++|...    +.++....+..+...+..+..+...+++.++-....-+.|-
T Consensus       467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~  528 (980)
T KOG0980|consen  467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQL  528 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44455555555555444    23333333333444444444444455555444444444443

>KOG0250|consensus

Probab=84.02  E-value=41  Score=32.25  Aligned_cols=64  Identities=28%  Similarity=0.370  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR   66 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~   66 (156)
                      ..|+.|+..++.+..--.-++..++.....++.+...+..+...........++...++.+|+.
T Consensus       661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666666655555555566666666666666666655554444444444445555555554

>KOG4674|consensus

Probab=83.67  E-value=54  Score=33.35  Aligned_cols=144  Identities=19%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy16513          6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK   85 (156)
Q Consensus         6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k   85 (156)
                      ..+.-.++.++.+..-+.++++.|...++....+|+............++..-..+.++...+.+....--. ......+
T Consensus       104 ~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs-~q~k~~r  182 (1822)
T KOG4674|consen  104 DALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVS-SQLKEER  182 (1822)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            344444555666666666667777766666666665554333333333333333333333333322221111 1111112


Q ss_pred             hHH--------------HHHHHHHHHHHHHHHHH--------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         86 HND--------------AVSEMGEQIDQLNKLKT--------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADAR  143 (156)
Q Consensus        86 ~~~--------------~~~el~~q~~~l~r~k~--------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~  143 (156)
                      +..              .+...++.+..+.|..+        +|.++...+..+......+...+.+|+.-+...+..+.
T Consensus       183 l~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls  262 (1822)
T KOG4674|consen  183 LEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELS  262 (1822)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211              22222233333333322        55566666666777777777777777777777777666


Q ss_pred             HHHHHhh
Q psy16513        144 MWKIKYE  150 (156)
Q Consensus       144 ~~r~k~e  150 (156)
                      .+|--|+
T Consensus       263 ~~k~t~~  269 (1822)
T KOG4674|consen  263 KLKDTAE  269 (1822)
T ss_pred             HHHhhhH
Confidence            6655444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=83.64  E-value=30  Score=30.42  Aligned_cols=41  Identities=32%  Similarity=0.410  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhc
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLAREL-------EELGERLEEAG   44 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~El-------e~l~~~le~~~   44 (156)
                      .+.-+++++...+.-...+|+.|.+.-.||       ++|...|+...
T Consensus        35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~   82 (522)
T PF05701_consen   35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQ   82 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555       45555554443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4643|consensus

Probab=83.59  E-value=43  Score=32.09  Aligned_cols=37  Identities=32%  Similarity=0.210  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16513          5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLE   41 (156)
Q Consensus         5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le   41 (156)
                      +++|++.+-.+....+.++-.--.|..|.+.|....+
T Consensus       417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~  453 (1195)
T KOG4643|consen  417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS  453 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=82.93  E-value=30  Score=29.79  Aligned_cols=62  Identities=26%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL   64 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l   64 (156)
                      ..|..++..+..-+..+.+++++..++..++..+..+|-.+.........-....+..+..|
T Consensus        45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l  106 (420)
T COG4942          45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL  106 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            34566666666666777777777777777777777777555544444333333333333333

>KOG0980|consensus

Probab=82.64  E-value=43  Score=31.50  Aligned_cols=48  Identities=21%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy16513        106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNK  153 (156)
Q Consensus       106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~~~  153 (156)
                      +..+...++..-....-.+..++.+|..+|++...+...|-+|||+.+
T Consensus       446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~  493 (980)
T KOG0980|consen  446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQA  493 (980)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            555555555554445556677778888888888888888888888653

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=82.55  E-value=15  Score=26.03  Aligned_cols=88  Identities=17%  Similarity=0.349  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16513         55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQ  134 (156)
Q Consensus        55 kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~  134 (156)
                      +++|.++..++..+........        .+..++-.+...++.+......+..+...+.++......+=.=+++=.-.
T Consensus        26 r~~E~E~~~l~~el~~l~~~r~--------~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~   97 (120)
T PF12325_consen   26 RRLEGELASLQEELARLEAERD--------ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE   97 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            4566666666666655554444        44555555666666555555566677777777777666666666666667


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy16513        135 LSKVTADARMWKIKYE  150 (156)
Q Consensus       135 l~e~e~~~~~~r~k~e  150 (156)
                      ++++...+.+.|.=|-
T Consensus        98 veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   98 VEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888877664

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=82.39  E-value=2.2  Score=38.79  Aligned_cols=43  Identities=26%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513          3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG   45 (156)
Q Consensus         3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~   45 (156)
                      ..+..+...+........++++.+.-+..|++-|+..|+.+-.
T Consensus       385 ~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~  427 (722)
T PF05557_consen  385 KEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK  427 (722)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566677777778888889999999999999999999877654

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=82.35  E-value=22  Score=28.14  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Q psy16513         87 NDAVSEMGEQIDQLNKLKTKLD  108 (156)
Q Consensus        87 ~~~~~el~~q~~~l~r~k~~le  108 (156)
                      ...+++.++.+..+...+++++
T Consensus       162 e~e~ee~~erlk~le~E~s~Le  183 (290)
T COG4026         162 EAEYEEVQERLKRLEVENSRLE  183 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445554444444444333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=81.86  E-value=39  Score=30.41  Aligned_cols=48  Identities=17%  Similarity=0.311  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16513         57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK  104 (156)
Q Consensus        57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k  104 (156)
                      ....+..|..+++....-+......++.++.....+....+..++..+
T Consensus       406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r  453 (594)
T PF05667_consen  406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELR  453 (594)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            455666677777777776666677777666654444444444444333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=80.88  E-value=32  Score=28.88  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513         10 EEVEVERQSRAKAEKQRADLARELEELGERLEE   42 (156)
Q Consensus        10 e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~   42 (156)
                      -+|+..+..+..++..-.+....|+-|..++..
T Consensus       220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~  252 (359)
T PF10498_consen  220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISK  252 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            345666666666666666666666666665533

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG1029|consensus

Probab=80.76  E-value=50  Score=30.92  Aligned_cols=18  Identities=33%  Similarity=0.538  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy16513         26 RADLARELEELGERLEEA   43 (156)
Q Consensus        26 k~~l~~Ele~l~~~le~~   43 (156)
                      +..|.-|++.|...+..+
T Consensus       439 ~~ql~~eletLn~k~qql  456 (1118)
T KOG1029|consen  439 KKQLQQELETLNFKLQQL  456 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	9e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +++ I +L+E++E E+ +R KAEKQ+ DL+ ELE L   LE+    T+ Q EL      +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

Query: 61   MS 62
              
Sbjct: 1181 DD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 28/137 (20%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            MQ ++ +LEE++E E  +R K + ++     +++++ +            I + + +  +
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED-----------DILIMEDQNNK 1001

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
            ++K R+ LEE      + LA   +K  +      +    +++L+ +L +  ++  +L+  
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 121  RKKLIIENSDLVRQLSK 137
            ++KL  E+SDL  Q+++
Sbjct: 1062 KRKLEGESSDLHEQIAE 1078

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q ++    E      + R +   ++ +L   L E+  R+EE    +       KK + +
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 61   MSKL----------RRDLEEANIQHESTLANLR-------KKHNDAVSEMGEQIDQLNKL 103
            M  L          R+ L+   +  +  +  +         ++N    E     ++++ L
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 104  KTKLDEANRTINDLDVARKKLIIENSDLVRQLSK 137
             T L E      +L   + K     S+L  +L K
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 10/151 (6%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            ++ R+ +L   +  E +      K +      + EL  RL++   +     ++ +K E E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 61   MSKLRR----------DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
             S L            +L+    + E  L     +  D  S+    + ++ +L++ + + 
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 111  NRTINDLDVARKKLIIENSDLVRQLSKVTAD 141
               +     AR K   +  DL  +L  +  +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
              +I ++E+++ +      K  K+R  L   + +L   L E         +L  K E+ +
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041

Query: 62   S----------KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEAN 111
            S          K R++LE+   + E   ++L ++  +  +++ E   QL K + +L  A 
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 112  RTINDLDVARKKLIIENSDLVRQLSKVTAD 141
              + D    +   + +  +L   +S +  D
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQED 1131

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 12/147 (8%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
             ++ I ELE  ++ E +SR + EK +  L  E  +L E++ E     +       K+E E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID-----------QLNKLKTKLDE 109
            +      LE+   Q  +      ++    +S++ E ++           Q   L  +L+ 
Sbjct: 1097 LQAALARLEDETSQK-NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 110  ANRTINDLDVARKKLIIENSDLVRQLS 136
                + D                +   
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 4/136 (2%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +      L+E+++ E +  A+AE+ R  LA + +EL E L E      A+IE  ++R  +
Sbjct: 890  LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM----EARIEEEEERSQQ 945

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
            +   ++ +++  +  E  L            E      ++ K++  +       N L   
Sbjct: 946  LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005

Query: 121  RKKLIIENSDLVRQLS 136
            RK L    SDL   L+
Sbjct: 1006 RKLLEERVSDLTTNLA 1021

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 10/147 (6%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLAR----------ELEELGERLEEAGGATSAQ 50
            +   + E EE+ +   + + K E   ++L            ELE++  +LE        Q
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 51   IELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
            I   + + AE+       EE      + L +   + N+A+ ++ E    ++ L+  L+  
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135

Query: 111  NRTINDLDVARKKLIIENSDLVRQLSK 137
                N  +  ++ L  E   L  +L  
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELED 1162

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 18/138 (13%), Positives = 51/138 (36%), Gaps = 4/138 (2%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
               +   +E  +       + E++   L  E   L E+L+    A +      ++    
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ----AETELYAEAEEMRVR 917

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
           ++  +++LEE   + E+ +    ++     +E  +   Q+  L+ +L+E       L + 
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 121 RKKLIIENSDLVRQLSKV 138
           +     +   +   +  +
Sbjct: 978 KVTADGKIKKMEDDILIM 995

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 2/150 (1%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q +I E  +E +   +     E   +    +L    ERL  +              + E
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
            ++KLR++L +   + ++      K  ++    + E  +Q   LKT+ +E NR I+D    
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052

Query: 121  RKKLIIENSDLVRQLSKVTADARMWKIKYE 150
              + +     LV +  ++  D    +++Y+
Sbjct: 1053 ITETM--EKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 9    EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
             +++++E +S  + +K    L  ++ +L  +++E       Q +  K    +M+ L    
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE-------QNKEYKSLLEKMNNLEITY 958

Query: 69   EEANIQHESTLANLRKKHND---AVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLI 125
                 +  S +  LR    +   A + +    +++ KL+ +L +       ++    K  
Sbjct: 959  STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 126  IENSDLVRQLSKVTADARMWKIKYE 150
             E   LV +L +     +  K +  
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELN 1043

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 19/135 (14%), Positives = 42/135 (31%)

Query: 7    ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
             L+  V ++   R    K+     +      ER ++       +I   +++  E +K  +
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945

Query: 67   DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLII 126
             L E     E T +   +K    V  +    ++      ++      I  L     +   
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Query: 127  ENSDLVRQLSKVTAD 141
            E   +     K   +
Sbjct: 1006 EKKTIEEWADKYKHE 1020

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 4/142 (2%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
            Q  +      V   R  +A    Q        +   ++L+    +     +L+   E ++
Sbjct: 871  QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930

Query: 62   SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVAR 121
             +L+R ++E          +L +K N+       + ++L     +L  +     +     
Sbjct: 931  MQLQRKIDEQ----NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986

Query: 122  KKLIIENSDLVRQLSKVTADAR 143
              L  E + L ++L +   + +
Sbjct: 987  LSLQEEIAKLRKELHQTQTEKK 1008

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 57/194 (29%)

Query: 2   QARIYE--LEEEVEVERQ---SRAKAE-KQRADLARELEELGERLEEAGGATSAQI--EL 53
           Q  + +  +EE + +  +   S  K E +Q + + R   E  +RL         Q+  + 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKY 129

Query: 54  NKKREAEMSKLRRDLEEAN-----IQH------ESTLAN-------LRKKHNDAV----- 90
           N  R     KLR+ L E       +        ++ +A        ++ K +  +     
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 91  ---SEMGEQIDQLNKLKTKLDEAN-----------RTINDLDVARKKLIIE----NSDLV 132
              +     ++ L KL  ++D                I+ +    ++L+      N  LV
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 133 RQLSKVTADARMWK 146
             L  V  +A+ W 
Sbjct: 250 --LLNV-QNAKAWN 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 40/158 (25%)

Query: 5   IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
           I      V  +    +  EKQ  +    +  +              +EL  K E E +  
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------------YLELKVKLENEYALH 446

Query: 65  RRDLEEANIQHESTLANLRKKHND-----------AVSEMGEQIDQLNK-------LKTK 106
           R  ++  NI       +L   + D              E  E++            L+ K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 107 L-------DEANRTINDLDVAR--KKLIIENSDLVRQL 135
           +       + +   +N L   +  K  I +N     +L
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 8/88 (9%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
               I  ++ +++       + +        +L  +  +L E     +   EL ++++  
Sbjct: 906 TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL--NYNGVPELTERKDTF 963

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHND 88
            ++    ++ +   +++TL    ++   
Sbjct: 964 FAQQWTGVKSSAETYKNTLLAELERLQK 991

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN--KKRE 58
            +    EL+E++E   +S  ++ K R  +  EL+       E           +  + R 
Sbjct: 178 YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRF 237

Query: 59  AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI-DQLNKLKTKLDEANRTINDL 117
             ++     L+    +  +    ++KK  +   +  + + D L+ +  +L +   +  +L
Sbjct: 238 EVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVEL 297

Query: 118 DVARKKLIIENSD 130
                 L IE+ D
Sbjct: 298 AGGNASLTIEDED 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.04
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	96.59
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.46
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.38
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	95.85
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.74
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.7
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.61
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	95.41
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.34
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.44
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.24
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	93.24
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.21
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.93
3bas_A	89	Myosin heavy chain, striated muscle/general contro	88.73
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.31
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.27
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.78
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	85.14
2wt7_B	90	Transcription factor MAFB; transcription, transcri	83.98
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	82.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.3
1nfn_A	191	Apolipoprotein E3; lipid transport, heparin-bindin	81.67
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	80.77

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.04  E-value=0.036  Score=38.63  Aligned_cols=60  Identities=13%  Similarity=0.250  Sum_probs=37.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD  141 (156)
Q Consensus        79 ~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~  141 (156)
                      ....+.++...-.+|...+..+   ..++++......+|...+++++.+|.+|..++++.+..
T Consensus        67 ~EE~~~~L~~~k~eLe~~l~el---~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~  126 (129)
T 2fxo_A           67 AEERCDQLIKNKIQLEAKVKEM---NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT  126 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444332   22445555567778888888888888888888887653

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.59  E-value=0.032  Score=37.11  Aligned_cols=40  Identities=30%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      .+..|...|..++..|..+|+.+..+..||++|++.|.+-
T Consensus        27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE   66 (97)
T 2eqb_B           27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE   66 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777888888888888888888888888887443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.46  E-value=0.12  Score=35.92  Aligned_cols=95  Identities=21%  Similarity=0.312  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK-------REAEMSKLRRDLEEANIQHE   76 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk-------~E~el~~l~~~lee~~~~~e   76 (156)
                      .|..|.+.+......|..++.....|..+..+|..+|..-.......++.+.+       ++..+.++...+++......
T Consensus        21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~  100 (129)
T 2fxo_A           21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA  100 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777777777788888888888877776666666666655       34455555555555554444


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Q psy16513         77 STLANLRKKHNDAVSEMGEQIDQ   99 (156)
Q Consensus        77 ~~~~~~k~k~~~~~~el~~q~~~   99 (156)
                       .+..-++|+...+.+|..+++.
T Consensus       101 -~L~~~kkkle~e~~~Lk~~led  122 (129)
T 2fxo_A          101 -ELTAKKRKLEDECSELKRDIDD  122 (129)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             3666666666666666666653

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.38  E-value=0.087  Score=37.92  Aligned_cols=40  Identities=30%  Similarity=0.484  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      .+..|.+.+..++..|..+|+.+..+..||++|++.|.+-
T Consensus        59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE   98 (154)
T 2ocy_A           59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE   98 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777788888888888888888888888888888443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=95.85  E-value=0.13  Score=33.43  Aligned_cols=83  Identities=27%  Similarity=0.436  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy16513          5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK   84 (156)
Q Consensus         5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~   84 (156)
                      |.+|..+++....-+++++-+...+...+++++..+++-.       .++...|..+..|++.+++.....-. +     
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~-------~~R~~~E~d~~~LrkdvD~a~l~r~d-L-----   68 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQDVDNASLARLD-L-----   68 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTHHHHHHHHHH-H-----
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHH-H-----
Confidence            6788999998888888888888888888888888776542       35556899999999999998876653 3     


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy16513         85 KHNDAVSEMGEQIDQLNK  102 (156)
Q Consensus        85 k~~~~~~el~~q~~~l~r  102 (156)
                        ...++.|.+.+..|++
T Consensus        69 --E~kvesL~eEl~fLkk   84 (86)
T 3swk_A           69 --ERKVESLQEEIAFLKK   84 (86)
T ss_dssp             --HHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHHHhh
Confidence              3456777777776643

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.74  E-value=0.38  Score=35.04  Aligned_cols=97  Identities=10%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16513          1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (156)
Q Consensus         1 l~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~   80 (156)
                      |+-++.|+++-|-++-..-.++-|.-.+++.-+..+-..+-++.+........+-.++.++..|+..|+...+... ..+
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~-q~s   89 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRG-HDS   89 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            4568999999999999999999999999999988888888887777777666667788888888888887776655 244


Q ss_pred             HHHHhhHHHHHHHHHHHH
Q psy16513         81 NLRKKHNDAVSEMGEQID   98 (156)
Q Consensus        81 ~~k~k~~~~~~el~~q~~   98 (156)
                      .+..-+...+..|...++
T Consensus        90 e~~~elq~ri~~L~~El~  107 (168)
T 3o0z_A           90 EMIGDLQARITSLQEEVK  107 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444333333444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.70  E-value=0.51  Score=36.28  Aligned_cols=71  Identities=11%  Similarity=0.068  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513          5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH   75 (156)
Q Consensus         5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~   75 (156)
                      ++.+-..++.....+..+-....+|..++..+...+..+.........-.++++..+..++..+.......
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666666666666666666666666666666665555555566666666666666666555444

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=95.41  E-value=0.33  Score=41.25  Aligned_cols=114  Identities=14%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16513         21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL  100 (156)
Q Consensus        21 k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l  100 (156)
                      -+.|+=.++..-|++|+.+|+++...........+..-..+..-.....+..-...+...+|+.++..--..+.+|+.  
T Consensus        54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls--  131 (562)
T 3ghg_A           54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ--  131 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--
T ss_pred             hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            344555677777777777777776555554444333222221111111111112221111444444443344444443  


Q ss_pred             HHHHHHhHHHHhhHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q psy16513        101 NKLKTKLDEANRTINDLDVARKKLIIENS------------------------DLVRQLSKVTAD  141 (156)
Q Consensus       101 ~r~k~~lee~~r~~~el~~~~~~l~~E~~------------------------el~r~l~e~e~~  141 (156)
                           ++.-++..|.++...+.+|+.+++                        ++++||+.+.+.
T Consensus       132 -----nIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~  191 (562)
T 3ghg_A          132 -----HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAK  191 (562)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhc
Confidence                 334455566777777777777663                        788888776553

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.34  E-value=0.59  Score=34.67  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513         29 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA---NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT  105 (156)
Q Consensus        29 l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~---~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~  105 (156)
                      +...+.+|..+|++++..+..   +-.-+|.++..+.+..-..   ...+...+...|.|+.....+...++..|++.  
T Consensus        22 ~~q~~~~le~El~EFqesSrE---LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e--   96 (189)
T 2v71_A           22 YKQSFQEARDELVEFQEGSRE---LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD--   96 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            344455555555555433332   3333444443333222222   22222234455666655555555555444332  


Q ss_pred             HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513        106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus       106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e  150 (156)
                       +..+......+...++.|+..+++|.|+.--..+.+.+...||.
T Consensus        97 -l~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln  140 (189)
T 2v71_A           97 -LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN  140 (189)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence             33344456667888888888888888888888888888887775

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.13  E-value=0.62  Score=43.07  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHhhHHHHHHHHHHHH
Q psy16513         26 RADLARELEELGERLEEAGGATSAQIE----LNKKREAEMSKLRRDLEEANIQHESTLANL---RKKHNDAVSEMGEQID   98 (156)
Q Consensus        26 k~~l~~Ele~l~~~le~~~~~~~~~~~----~~kk~E~el~~l~~~lee~~~~~e~~~~~~---k~k~~~~~~el~~q~~   98 (156)
                      ...|...+.+|...|++..........    +..+.+.++..|+..+++....... ....   ...+...+.++...+.
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e-~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-AKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555443322221111    2234566666676666665554332 3222   2333445666666666


Q ss_pred             HHHHHHHHhHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513         99 QLNKLKTKLDEA-NRTINDLDVARKKLIIENSDLVRQLSKVTAD  141 (156)
Q Consensus        99 ~l~r~k~~lee~-~r~~~el~~~~~~l~~E~~el~r~l~e~e~~  141 (156)
                      .+.+.+..+++. .....+|...+..|+.++..|..++++++..
T Consensus      1002 ~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A         1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555533332 2233456666666777776666666666644

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.00  E-value=0.59  Score=43.18  Aligned_cols=49  Identities=16%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513         53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT  105 (156)
Q Consensus        53 ~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~  105 (156)
                      ..+.++.++..++..+......... +   ..++....+++.+.+.+|.+.+.
T Consensus       985 ~v~~L~~e~~~l~~~~~~~~ke~~~-l---ee~~~~~~~~L~~kv~~L~~e~~ 1033 (1080)
T 2dfs_A          985 RVLSLQEEIAKLRKELHQTQTEKKT-I---EEWADKYKHETEQLVSELKEQNT 1033 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666665555543 3   22233333456666666665554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.44  E-value=0.16  Score=47.30  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513          5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL   40 (156)
Q Consensus         5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l   40 (156)
                      +.++...+.........++.....|..++..+..++
T Consensus       866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L  901 (1184)
T 1i84_S          866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL  901 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.24  E-value=0.15  Score=47.41  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513          6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus         6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      .++.+.++..+..-.+++....++...+..|..++..+
T Consensus       860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l  897 (1184)
T 1i84_S          860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL  897 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555444

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.24  E-value=0.13  Score=36.17  Aligned_cols=39  Identities=31%  Similarity=0.497  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513          4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE   42 (156)
Q Consensus         4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~   42 (156)
                      .+..|...+..++..|..+|..+..+..||++|++.|.+
T Consensus        47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe   85 (135)
T 2e7s_A           47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD   85 (135)
T ss_dssp             HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777777777777777777744

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.06  E-value=0.5  Score=30.53  Aligned_cols=18  Identities=11%  Similarity=0.132  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHhhhc
Q psy16513        135 LSKVTADARMWKIKYETN  152 (156)
Q Consensus       135 l~e~e~~~~~~r~k~e~~  152 (156)
                      +..+...+..||.|||++
T Consensus        23 ~dn~~~~~edfk~KyE~E   40 (86)
T 3swk_A           23 RDNLAEDIMRLREKLQEE   40 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444445555666666643

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.21  E-value=4  Score=29.56  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513          7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE   76 (156)
Q Consensus         7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e   76 (156)
                      .++.-+-.++.....++..|..|..++..|.+.|+.-.....-..++.+-++..+..|..+++.......
T Consensus        45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~  114 (168)
T 3o0z_A           45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE  114 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445556667777777777777777777665544444444444455455555544444443333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.93  E-value=3.5  Score=28.39  Aligned_cols=89  Identities=16%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH------
Q psy16513         56 KREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENS------  129 (156)
Q Consensus        56 k~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~------  129 (156)
                      ....++.++++.+.......+. +..++.-+...+.++....+.      .+.+++..+..+...+.++..+..      
T Consensus        35 ~~k~Ei~elrr~iq~L~~el~~-l~~~~~sLE~~l~e~e~~~~~------~l~~~q~~i~~lE~eL~~~r~em~~ql~EY  107 (131)
T 3tnu_A           35 SGKSEISELRRTMQNLEIELQS-QLSMKASLENSLEETKGRYCM------QLAQIQEMIGSVEEQLAQLRCEMEQQNQEY  107 (131)
T ss_dssp             ------CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777777777766663 555565566666666655542      344444444445555544444433      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhh
Q psy16513        130 -DLVRQLSKVTADARMWKIKYET  151 (156)
Q Consensus       130 -el~r~l~e~e~~~~~~r~k~e~  151 (156)
                       +|-.---.++.+++-+|+=.|+
T Consensus       108 q~Ll~vKl~Ld~EIatYRkLLEG  130 (131)
T 3tnu_A          108 KILLDVKTRLEQEIATYRRLLEG  130 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhHCc
Confidence             2222222456667777665553

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=88.73  E-value=3.1  Score=26.78  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16513          9 EEEVEVERQSRAKAEKQRADLARELEELGER   39 (156)
Q Consensus         9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~   39 (156)
                      .+.++.....|..++.....|..+..+|..+
T Consensus        27 ke~l~k~e~~rkele~~~~~l~~ek~~L~~q   57 (89)
T 3bas_A           27 KEDLAKTERIKKELEEQNVTLLEQKNDLFGS   57 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444444444444333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.31  E-value=4.6  Score=27.65  Aligned_cols=87  Identities=13%  Similarity=0.240  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH-------
Q psy16513         57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENS-------  129 (156)
Q Consensus        57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~-------  129 (156)
                      ...++.++++.+.......+. +..++.-+...+.++....+.      .+.+++..+..+...+.++..+..       
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~-l~~~~~~LE~~l~e~e~~~~~------~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq  106 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDN-VKKQCANLQNAIADAEQRGEL------ALKDARNKLAELEEALQKAKQDMARLLREYQ  106 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            445677777777766666663 555555555566665555442      344444444444444444444432       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy16513        130 DLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus       130 el~r~l~e~e~~~~~~r~k~e  150 (156)
                      +|-.---.++.+++-+|+=.|
T Consensus       107 ~LlnvKl~Ld~EIatYRkLLE  127 (129)
T 3tnu_B          107 ELMNTKLALDVEIATYRKLLE  127 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhHC
Confidence            222222244566666665444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.27  E-value=4  Score=26.91  Aligned_cols=32  Identities=13%  Similarity=0.220  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513         12 VEVERQSRAKAEKQRADLARELEELGERLEEA   43 (156)
Q Consensus        12 le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~   43 (156)
                      ++.++.--..++....+...++..|...|...
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE   38 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKE   38 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444455555555566666666555443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.78  E-value=5.5  Score=26.89  Aligned_cols=38  Identities=16%  Similarity=0.147  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513        113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE  150 (156)
Q Consensus       113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e  150 (156)
                      ....+...++.|+..+++|.|+---..+.+.++-+||.
T Consensus        50 ~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n   87 (111)
T 2v66_B           50 IKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN   87 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence            44457788888888888888888888888888888875

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=83.98  E-value=3.7  Score=26.67  Aligned_cols=38  Identities=21%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513        114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET  151 (156)
Q Consensus       114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~  151 (156)
                      +.+|......|..+...|...+.....++..|+.||+.
T Consensus        50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~   87 (90)
T 2wt7_B           50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK   87 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666777777777788888888999999984

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=82.78  E-value=20  Score=30.00  Aligned_cols=100  Identities=8%  Similarity=0.161  Sum_probs=43.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16513         22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN  101 (156)
Q Consensus        22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~  101 (156)
                      +.|+-.++..-+++|+..|++........-...+..-.-+..-.....+..........+|+.++..--.-+..++.   
T Consensus        56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~---  132 (491)
T 1m1j_A           56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVN---  132 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            44555566666666776776665544443333333222222222222222222222222222222221122222222   


Q ss_pred             HHHHHhHHHHhhHHHHHHHHHHHHHHH
Q psy16513        102 KLKTKLDEANRTINDLDVARKKLIIEN  128 (156)
Q Consensus       102 r~k~~lee~~r~~~el~~~~~~l~~E~  128 (156)
                          +|.-++..+.++...+.+|+.+.
T Consensus       133 ----~IrvLq~~l~~q~skIQRLE~dI  155 (491)
T 1m1j_A          133 ----RIKALQNSIQEQVVEMKRLEVDI  155 (491)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHH
Confidence                22333445666666777777666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.30  E-value=21  Score=29.90  Aligned_cols=23  Identities=4%  Similarity=0.024  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy16513        123 KLIIENSDLVRQLSKVTADARMW  145 (156)
Q Consensus       123 ~l~~E~~el~r~l~e~e~~~~~~  145 (156)
                      .++..+.+...++.+...+++.|
T Consensus       548 ~le~~~~~~~~~~~~l~~e~~~~  570 (597)
T 3oja_B          548 ALEKQLDNKRAKQAELRQETSLK  570 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHH
Confidence            33333333333333333333333

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A

Probab=81.67  E-value=13  Score=27.24  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513         65 RRDLEEANIQHESTLANLRKKHNDAVSEMGEQI   97 (156)
Q Consensus        65 ~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~   97 (156)
                      +..+++....+.....+++.+....++++..++
T Consensus       105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L  137 (191)
T 1nfn_A          105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRL  137 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            344555555555555555555554444444444

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=80.77  E-value=7.7  Score=23.87  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513        117 LDVARKKLIIENSDLVRQLSKVTADARMW  145 (156)
Q Consensus       117 l~~~~~~l~~E~~el~r~l~e~e~~~~~~  145 (156)
                      ....+.....|+.++.+.+..++.++...
T Consensus        47 ~~~~l~~~k~Ei~elrr~iq~L~~el~sl   75 (77)
T 3trt_A           47 NNDALRQAKQESTEYRRQVQSLTMEVDAL   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344445555555555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1gs9a_	144	Apolipoprotein E {Human (Homo sapiens), E4 [TaxId:	84.83

>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]

Probab=84.83  E-value=2.1  Score=28.05  Aligned_cols=20  Identities=10%  Similarity=0.204  Sum_probs=8.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHH
Q psy16513         78 TLANLRKKHNDAVSEMGEQI   97 (156)
Q Consensus        78 ~~~~~k~k~~~~~~el~~q~   97 (156)
                      .+.+++.++...++++...+
T Consensus        86 ~lee~r~kl~~~~eel~~~~  105 (144)
T d1gs9a_          86 DMEDVRGRLVQYRGEVQAML  105 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433