Psyllid ID: psy1652


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80------
MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIMH
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccEEEEEccccccc
cccEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHEEccccccc
miqsltsggsrDKKLLAEAQQMLADSKAKIEFLRMRILKvkqsknhhhhhssgdlnsngdqhshkgkllESQHYRAIVFQGNSIMH
miqsltsggsrdkKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHhhhssgdlnsngdQHSHKGKLLESQHYRAIVFQGNSIMH
MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNhhhhhssGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIMH
*****************************IEFLRMRIL************************************************
**************LLAEAQQMLADSKAKIEFLRMRI*****************************KLLESQHYRAIVFQGN****
***********DKKLLAEAQQMLADSKAKIEFLRMRILKV*************************GKLLESQHYRAIVFQGNSIMH
*IQ**TSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKN********************GKLLESQHYRAIVFQGN****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MIQSLTSGGSRDKKLxxxxxxxxxxxxxxxxxxxxxILKVKQSKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIMH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query86 2.2.26 [Sep-21-2011]
A1Z7T0 1190 Serine/threonine-protein no N/A 0.511 0.036 0.739 6e-10
A7MBL8 977 Serine/threonine-protein no N/A 0.5 0.044 0.651 5e-09
Q16512 942 Serine/threonine-protein yes N/A 0.860 0.078 0.337 4e-07
P70268 946 Serine/threonine-protein yes N/A 0.5 0.045 0.511 2e-06
A1A4I4 944 Serine/threonine-protein yes N/A 0.5 0.045 0.488 4e-06
Q63433 946 Serine/threonine-protein yes N/A 0.5 0.045 0.488 5e-06
Q8BWW9 983 Serine/threonine-protein no N/A 0.5 0.043 0.534 6e-06
Q16513 984 Serine/threonine-protein no N/A 0.5 0.043 0.534 6e-06
Q8K045 878 Serine/threonine-protein no N/A 0.5 0.048 0.488 4e-05
O08874 985 Serine/threonine-protein no N/A 0.453 0.039 0.538 9e-05
>sp|A1Z7T0|PKN_DROME Serine/threonine-protein kinase N OS=Drosophila melanogaster GN=Pkn PE=1 SV=1 Back     alignment and function desciption
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 38/46 (82%), Gaps = 2/46 (4%)

Query: 1   MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNH 46
           MIQSL  G   DKKLLAEA QMLADSKAKIEFLR+RI+KVKQ++  
Sbjct: 176 MIQSLGIGC--DKKLLAEAHQMLADSKAKIEFLRLRIIKVKQNREQ 219




Pkc-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. May play a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion and transcription activation signaling processes (By similarity). Plays a role in regulating Rho-mediated dorsal closure during embryogenesis.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|A7MBL8|PKN2_DANRE Serine/threonine-protein kinase N2 OS=Danio rerio GN=pkn2 PE=2 SV=1 Back     alignment and function description
>sp|Q16512|PKN1_HUMAN Serine/threonine-protein kinase N1 OS=Homo sapiens GN=PKN1 PE=1 SV=2 Back     alignment and function description
>sp|P70268|PKN1_MOUSE Serine/threonine-protein kinase N1 OS=Mus musculus GN=Pkn1 PE=1 SV=3 Back     alignment and function description
>sp|A1A4I4|PKN1_BOVIN Serine/threonine-protein kinase N1 OS=Bos taurus GN=PKN1 PE=2 SV=1 Back     alignment and function description
>sp|Q63433|PKN1_RAT Serine/threonine-protein kinase N1 OS=Rattus norvegicus GN=Pkn1 PE=1 SV=2 Back     alignment and function description
>sp|Q8BWW9|PKN2_MOUSE Serine/threonine-protein kinase N2 OS=Mus musculus GN=Pkn2 PE=1 SV=3 Back     alignment and function description
>sp|Q16513|PKN2_HUMAN Serine/threonine-protein kinase N2 OS=Homo sapiens GN=PKN2 PE=1 SV=1 Back     alignment and function description
>sp|Q8K045|PKN3_MOUSE Serine/threonine-protein kinase N3 OS=Mus musculus GN=Pkn3 PE=1 SV=1 Back     alignment and function description
>sp|O08874|PKN2_RAT Serine/threonine-protein kinase N2 OS=Rattus norvegicus GN=Pkn2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
345488814 1831 PREDICTED: hypothetical protein LOC10011 0.732 0.034 0.615 1e-11
350404415 1689 PREDICTED: hypothetical protein LOC10074 0.697 0.035 0.606 1e-11
380014132 1775 PREDICTED: LOW QUALITY PROTEIN: serine/t 0.697 0.033 0.597 1e-11
340716554 1712 PREDICTED: hypothetical protein LOC10064 0.697 0.035 0.606 1e-11
383860305 1758 PREDICTED: serine/threonine-protein kina 0.697 0.034 0.597 3e-11
328714740 1065 PREDICTED: serine/threonine-protein kina 0.837 0.067 0.555 3e-11
328714738 1122 PREDICTED: serine/threonine-protein kina 0.837 0.064 0.555 4e-11
328777943 1556 PREDICTED: hypothetical protein LOC72592 0.697 0.038 0.597 4e-11
170028210165 conserved hypothetical protein [Culex qu 0.511 0.266 0.8 6e-10
347965283 1201 AGAP007587-PB [Anopheles gambiae str. PE 0.720 0.051 0.573 7e-10
>gi|345488814|ref|XP_001599463.2| PREDICTED: hypothetical protein LOC100114442 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 1   MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHHSSGDLNSNGD 60
           MIQSLTSG  RDKKLL EAQQML DS+AKIEFLRMRI+K+ Q++   H    G    NGD
Sbjct: 161 MIQSLTSG-HRDKKLLQEAQQMLDDSRAKIEFLRMRIMKLNQAREQQHARGDGPA-PNGD 218

Query: 61  QHSHK 65
              +K
Sbjct: 219 ATGNK 223




Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404415|ref|XP_003487097.1| PREDICTED: hypothetical protein LOC100743934 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380014132|ref|XP_003691095.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase N-like [Apis florea] Back     alignment and taxonomy information
>gi|340716554|ref|XP_003396762.1| PREDICTED: hypothetical protein LOC100648635 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383860305|ref|XP_003705631.1| PREDICTED: serine/threonine-protein kinase N-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328714740|ref|XP_003245439.1| PREDICTED: serine/threonine-protein kinase N2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328714738|ref|XP_003245438.1| PREDICTED: serine/threonine-protein kinase N2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328777943|ref|XP_001121710.2| PREDICTED: hypothetical protein LOC725923 [Apis mellifera] Back     alignment and taxonomy information
>gi|170028210|ref|XP_001841989.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167871814|gb|EDS35197.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|347965283|ref|XP_001687882.2| AGAP007587-PB [Anopheles gambiae str. PEST] gi|333466432|gb|EDO64531.2| AGAP007587-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
FB|FBgn0020621 1190 Pkn "Protein kinase related to 0.488 0.035 0.772 4.5e-09
ZFIN|ZDB-GENE-061013-393 977 zgc:153916 "zgc:153916" [Danio 0.5 0.044 0.651 3.2e-08
ZFIN|ZDB-GENE-061207-42 983 pkn2 "protein kinase N2" [Dani 0.5 0.043 0.651 3.3e-08
UNIPROTKB|E1BYS6 316 PKN2 "Uncharacterized protein" 0.5 0.136 0.604 1.4e-07
UNIPROTKB|O44393 963 PRK2 "Protein kinase C-related 0.476 0.042 0.666 2.3e-07
UNIPROTKB|K7EM57263 PKN1 "Serine/threonine-protein 0.860 0.281 0.337 7.1e-07
UNIPROTKB|F1NF33 941 PKN3 "Uncharacterized protein" 0.5 0.045 0.604 1.6e-06
UNIPROTKB|K7EKY9256 PKN1 "Serine/threonine-protein 0.5 0.167 0.488 4e-06
ZFIN|ZDB-GENE-030131-1902 940 pkn3 "protein kinase N3" [Dani 0.511 0.046 0.522 4.2e-06
UNIPROTKB|Q16512 942 PKN1 "Serine/threonine-protein 0.860 0.078 0.337 5.4e-06
FB|FBgn0020621 Pkn "Protein kinase related to protein kinase N" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 148 (57.2 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 34/44 (77%), Positives = 38/44 (86%)

Query:     1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSK 44
             MIQSL  G   DKKLLAEA QMLADSKAKIEFLR+RI+KVKQ++
Sbjct:   176 MIQSLGIGC--DKKLLAEAHQMLADSKAKIEFLRLRIIKVKQNR 217




GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;NAS
GO:0006468 "protein phosphorylation" evidence=ISS;NAS
GO:0004697 "protein kinase C activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0004672 "protein kinase activity" evidence=IDA
GO:0007391 "dorsal closure" evidence=IMP;TAS
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0007472 "wing disc morphogenesis" evidence=IMP
ZFIN|ZDB-GENE-061013-393 zgc:153916 "zgc:153916" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061207-42 pkn2 "protein kinase N2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYS6 PKN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O44393 PRK2 "Protein kinase C-related kinase" [Pisaster ochraceus (taxid:7612)] Back     alignment and assigned GO terms
UNIPROTKB|K7EM57 PKN1 "Serine/threonine-protein kinase N1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF33 PKN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K7EKY9 PKN1 "Serine/threonine-protein kinase N1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1902 pkn3 "protein kinase N3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q16512 PKN1 "Serine/threonine-protein kinase N1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P70268PKN1_MOUSE2, ., 7, ., 1, 1, ., 1, 30.51160.50.0454yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
cd1162371 cd11623, HR1_PKN_2, Second Protein kinase C-relate 8e-18
cd1163274 cd11632, HR1_PKN3_2, Second Protein kinase C-relat 2e-11
cd1163174 cd11631, HR1_PKN2_2, Second Protein kinase C-relat 1e-09
cd1163078 cd11630, HR1_PKN1_2, Second Protein kinase C-relat 5e-08
pfam0218560 pfam02185, HR1, Hr1 repeat 0.002
>gnl|CDD|212013 cd11623, HR1_PKN_2, Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N Back     alignment and domain information
 Score = 70.0 bits (172), Expect = 8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 1  MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSK 44
          MIQ  ++G S+D+KLLAEAQQML DSKAKIEFLRM+IL+ KQ  
Sbjct: 28 MIQMYSNGKSKDRKLLAEAQQMLEDSKAKIEFLRMQILRAKQQA 71


PKN, also called Protein-kinase C-related kinase (PRK), is a serine/threonine protein kinase that can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytoskeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. In some vertebrates, there are three PKN isoforms from different genes (designated PKN1, PKN2, and PKN3), which show different enzymatic properties, tissue distribution, and varied functions. PKN proteins contain three HR1 domains, a C2 domain, and a kinase domain. This model characterizes the second HR1 domain of PKN. HR1 domains are anti-parallel coiled-coil (ACC) domains that bind small GTPases from the Rho family. Length = 71

>gnl|CDD|212022 cd11632, HR1_PKN3_2, Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N3 Back     alignment and domain information
>gnl|CDD|212021 cd11631, HR1_PKN2_2, Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N2 Back     alignment and domain information
>gnl|CDD|212020 cd11630, HR1_PKN1_2, Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N1 Back     alignment and domain information
>gnl|CDD|216921 pfam02185, HR1, Hr1 repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 86
cd0008972 HR1 Protein kinase C-related kinase homology regio 98.32
smart0074257 Hr1 Rho effector or protein kinase C-related kinas 97.99
PF0218570 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repea 97.65
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain Back     alignment and domain information
Probab=98.32  E-value=3.8e-07  Score=56.75  Aligned_cols=38  Identities=42%  Similarity=0.672  Sum_probs=33.5

Q ss_pred             CcccccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy1652           1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKV   40 (86)
Q Consensus         1 Miq~ys~gssKDRKLLatAQQMLqDSKtKIE~IRMqI~k~   40 (86)
                      |+++|++++.+  +.+++|+++|.||..||++||++|-..
T Consensus        31 m~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr~~L~k~   68 (72)
T cd00089          31 LLRLYSDEKKK--KLLAEAEQMLRESKQKLELLKMQLEKL   68 (72)
T ss_pred             HHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889988544  899999999999999999999999654



Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.

>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues Back     alignment and domain information
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
1urf_A81 Hr1b Domain From Prk1 Length = 81 3e-06
>pdb|1URF|A Chain A, Hr1b Domain From Prk1 Length = 81 Back     alignment and structure

Iteration: 1

Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 33/43 (76%) Query: 1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQS 43 MIQ+ ++G ++D+KLL AQQML DSK KI+ +RM++ + Q+ Sbjct: 30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQA 72 Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
1urf_A81 Protein kinase C-like 1; transferase, G-protein, H 1e-12
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B* Length = 81 Back     alignment and structure
 Score = 57.0 bits (137), Expect = 1e-12
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 1  MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHH 49
          MIQ+ ++G ++D+KLL  AQQML DSK KI+ +RM++ +  Q+    + 
Sbjct: 30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQADQLENQ 78


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
1urf_A81 Protein kinase C-like 1; transferase, G-protein, H 99.83
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B* Back     alignment and structure
Probab=99.83  E-value=1.4e-21  Score=130.22  Aligned_cols=41  Identities=49%  Similarity=0.776  Sum_probs=39.0

Q ss_pred             CcccccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q psy1652           1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVK   41 (86)
Q Consensus         1 Miq~ys~gssKDRKLLatAQQMLqDSKtKIE~IRMqI~k~~   41 (86)
                      ||++|++|+++|||||+||||||+|||+|||+|||||+...
T Consensus        30 mi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k~~   70 (81)
T 1urf_A           30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRAL   70 (81)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999998743




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 86
d1urfa_81 a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Hu 4e-09
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: HR1 repeat
family: HR1 repeat
domain: Protein kinase c-like 1, pkn/prk1
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 46.7 bits (111), Expect = 4e-09
 Identities = 21/43 (48%), Positives = 33/43 (76%)

Query: 1  MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQS 43
          MIQ+ ++G ++D+KLL  AQQML DSK KI+ +RM++ +  Q+
Sbjct: 30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQA 72


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
d1urfa_81 Protein kinase c-like 1, pkn/prk1 {Human (Homo sap 99.23
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: HR1 repeat
family: HR1 repeat
domain: Protein kinase c-like 1, pkn/prk1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23  E-value=1.2e-12  Score=84.13  Aligned_cols=43  Identities=49%  Similarity=0.770  Sum_probs=39.4

Q ss_pred             CcccccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q psy1652           1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQS   43 (86)
Q Consensus         1 Miq~ys~gssKDRKLLatAQQMLqDSKtKIE~IRMqI~k~~q~   43 (86)
                      |+++|+++.++|||.+++||+||.||+.||++|||+|......
T Consensus        30 m~k~~~~~~~~DrK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~   72 (81)
T d1urfa_          30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQA   72 (81)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999999999999999999875443