Psyllid ID: psy16544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60---
Protein Sequence
MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLEPN
Secondary Structure (PSIPRED)
ccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEcccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccEEcccEEcccHHHHccccc
Coil and Loop (DISEMBL)
MKIQYIHSILSDQALFEKYEDFMVRRVLsiepdarwcptpdcgkvfdgqflvpkhvlrslepn
Flexible Loop (DISEMBL)
MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLEPN
Low Complexity Region (SEG)
MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLEPN
Disordered region (IsUnstruct)
**IQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVL******
Disordered Region (DISOPRED)
****YIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSL***
Disordered Region (DISEMBL)
MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLEPN
Disordered Region (DISPRO)
MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLEPN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	63	2.2.26 [Sep-21-2011]
Q2VJ60	838	E3 ubiquitin-protein liga	yes	N/A	0.603	0.045	0.657	5e-10
P50636	840	E3 ubiquitin-protein liga	yes	N/A	0.603	0.045	0.657	5e-10
Q9NV58	838	E3 ubiquitin-protein liga	yes	N/A	0.603	0.045	0.657	5e-10
Q08B84	687	E3 ubiquitin-protein liga	N/A	N/A	0.634	0.058	0.55	4e-09
Q1L8L6	701	E3 ubiquitin-protein liga	no	N/A	0.555	0.049	0.628	9e-09
Q6ZMZ0	732	E3 ubiquitin-protein liga	no	N/A	0.603	0.051	0.578	2e-08
A2A7Q9	732	E3 ubiquitin-protein liga	no	N/A	0.603	0.051	0.578	2e-08

>sp|Q2VJ60|RN19A_PIG E3 ubiquitin-protein ligase RNF19A OS=Sus scrofa GN=RNF19A PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form of a thioester and then directly transfers the ubiquitin to targeted substrates, such as SNCAIP or CASR.
Sus scrofa (taxid: 9823)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P50636|RN19A_MOUSE E3 ubiquitin-protein ligase RNF19A OS=Mus musculus GN=Rnf19a PE=1 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form of a thioester and then directly transfers the ubiquitin to targeted substrates, such as SNCAIP or CASR.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NV58|RN19A_HUMAN E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens GN=RNF19A PE=1 SV=3

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form of a thioester and then directly transfers the ubiquitin to targeted substrates, such as SNCAIP or CASR. Specifically ubiquitinates pathogenic SOD1 variants, which leads to their proteasomal degradation and to neuronal protection.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q08B84|RN19B_XENLA E3 ubiquitin-protein ligase RNF19B OS=Xenopus laevis GN=rnf19b PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 4   QYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           Q++ +IL D  L  KYE+F++RR L+ +PD RWCP PDCG
Sbjct: 149 QHVRAILRDPLLTRKYEEFLLRRCLAADPDCRWCPAPDCG 188

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q1L8L6|RN19B_DANRE E3 ubiquitin-protein ligase RNF19B OS=Danio rerio GN=rnf19b PE=3 SV=2

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 9   ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           IL D  L EKYE+F++RR L+ +PD RWCP PDCG
Sbjct: 166 ILDDPNLMEKYEEFLLRRCLASDPDCRWCPAPDCG 200

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6ZMZ0|RN19B_HUMAN E3 ubiquitin-protein ligase RNF19B OS=Homo sapiens GN=RNF19B PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  +L+D  L  KYE+FM+RR L+ +PD RWCP PDCG
Sbjct: 175 IRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 212

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form of a thioester and then directly transfers the ubiquitin to targeted substrates, such as UCKL1. Involved in the cytolytic activity of natural killer cells and cytotoxic T-cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2A7Q9|RN19B_MOUSE E3 ubiquitin-protein ligase RNF19B OS=Mus musculus GN=Rnf19b PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  +L+D  L  KYE+FM+RR L+ +PD RWCP PDCG
Sbjct: 172 IRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 209

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form of a thioester and then directly transfers the ubiquitin to targeted substrates, such as UCKL1. Involved in the cytolytic activity of natural killer cells and cytotoxic T-cells.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
189241739	646	PREDICTED: similar to ring finger protei	0.603	0.058	0.789	3e-12
270000789	697	hypothetical protein TcasGA2_TC011034 [T	0.603	0.054	0.789	3e-12
332017491	792	E3 ubiquitin-protein ligase RNF19A [Acro	0.587	0.046	0.783	3e-11
383859728	785	PREDICTED: E3 ubiquitin-protein ligase R	0.587	0.047	0.756	5e-11
350404007	788	PREDICTED: E3 ubiquitin-protein ligase R	0.587	0.046	0.756	5e-11
340725476	788	PREDICTED: e3 ubiquitin-protein ligase R	0.587	0.046	0.756	5e-11
328783698	780	PREDICTED: e3 ubiquitin-protein ligase R	0.587	0.047	0.756	5e-11
307202313	796	E3 ubiquitin-protein ligase RNF19A [Harp	0.587	0.046	0.756	5e-11
307180807	791	E3 ubiquitin-protein ligase RNF19A [Camp	0.587	0.046	0.756	5e-11
345482712	746	PREDICTED: E3 ubiquitin-protein ligase R	0.587	0.049	0.756	1e-10

>gi|189241739|ref|XP_001810496.1| PREDICTED: similar to ring finger protein 19 (dorfin) (double ring-finger protein) [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  I+ D +LFEKYEDFMVRRVL+IEPDARWCP PDCG
Sbjct: 112 IRGIIDDVSLFEKYEDFMVRRVLAIEPDARWCPAPDCG 149

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270000789|gb|EEZ97236.1| hypothetical protein TcasGA2_TC011034 [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
           I  I+ D +LFEKYEDFMVRRVL+IEPDARWCP PDCG
Sbjct: 163 IRGIIDDVSLFEKYEDFMVRRVLAIEPDARWCPAPDCG 200

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017491|gb|EGI58212.1| E3 ubiquitin-protein ligase RNF19A [Acromyrmex echinatior]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/37 (78%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL+IEPDARWCP PDC
Sbjct: 167 IRMILNDQTQLEKYEDFMVRRVLAIEPDARWCPAPDC 203

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859728|ref|XP_003705344.1| PREDICTED: E3 ubiquitin-protein ligase RNF19A-like [Megachile rotundata]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 167 IRMILNDQTQLEKYEDFMVRRVLAVEPDARWCPAPDC 203

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404007|ref|XP_003486979.1| PREDICTED: E3 ubiquitin-protein ligase RNF19A-like [Bombus impatiens]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 167 IRMILNDQTQLEKYEDFMVRRVLAVEPDARWCPAPDC 203

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725476|ref|XP_003401095.1| PREDICTED: e3 ubiquitin-protein ligase RNF19A-like [Bombus terrestris]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 167 IRMILNDQTQLEKYEDFMVRRVLAVEPDARWCPAPDC 203

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783698|ref|XP_623728.3| PREDICTED: e3 ubiquitin-protein ligase RNF19A isoform 2 [Apis mellifera]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 167 IRMILNDQTQLEKYEDFMVRRVLAVEPDARWCPAPDC 203

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202313|gb|EFN81777.1| E3 ubiquitin-protein ligase RNF19A [Harpegnathos saltator]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 171 IRMILNDQTQLEKYEDFMVRRVLAVEPDARWCPAPDC 207

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180807|gb|EFN68671.1| E3 ubiquitin-protein ligase RNF19A [Camponotus floridanus]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 167 IRMILNDQTQLEKYEDFMVRRVLAVEPDARWCPAPDC 203

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482712|ref|XP_001608205.2| PREDICTED: E3 ubiquitin-protein ligase RNF19A-like [Nasonia vitripennis]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 6   IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDC 42
           I  IL+DQ   EKYEDFMVRRVL++EPDARWCP PDC
Sbjct: 136 IRMILNDQVQLEKYEDFMVRRVLAVEPDARWCPAPDC 172

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
UNIPROTKB|E1BIP5	838	RNF19A "Uncharacterized protei	0.603	0.045	0.657	1e-08
UNIPROTKB|E2QTG7	838	RNF19A "Uncharacterized protei	0.603	0.045	0.657	1e-08
UNIPROTKB|Q9NV58	838	RNF19A "E3 ubiquitin-protein l	0.603	0.045	0.657	1e-08
UNIPROTKB|Q2VJ60	838	RNF19A "E3 ubiquitin-protein l	0.603	0.045	0.657	1e-08
MGI|MGI:1353623	840	Rnf19a "ring finger protein 19	0.603	0.045	0.657	1e-08
RGD|1307807	840	Rnf19a "ring finger protein 19	0.603	0.045	0.657	1e-08
UNIPROTKB|F1P2D8	822	RNF19A "Uncharacterized protei	0.603	0.046	0.631	2.6e-08
UNIPROTKB|E9PAW6	587	RNF19B "E3 ubiquitin-protein l	0.603	0.064	0.578	4.4e-08
ZFIN|ZDB-GENE-060503-281	701	rnf19b "ring finger protein 19	0.555	0.049	0.628	5.7e-08
UNIPROTKB|G3XA82	731	RNF19B "IBR domain containing	0.603	0.051	0.578	6e-08

UNIPROTKB|E1BIP5 RNF19A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QTG7 RNF19A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9NV58 RNF19A "E3 ubiquitin-protein ligase RNF19A" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005813 "centrosome" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=NAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0008134 "transcription factor binding" evidence=TAS

UNIPROTKB|Q2VJ60 RNF19A "E3 ubiquitin-protein ligase RNF19A" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1353623 Rnf19a "ring finger protein 19A" [Mus musculus (taxid:10090)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1307807 Rnf19a "ring finger protein 19A, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  ILSD  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P2D8 RNF19A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 24/38 (63%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  IL+D  L EKYE+FM+RR L  +PD RWCP PDCG
Sbjct:   172 IRLILNDDILMEKYEEFMLRRWLVADPDCRWCPAPDCG 209

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PAW6 RNF19B "E3 ubiquitin-protein ligase RNF19B" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  +L+D  L  KYE+FM+RR L+ +PD RWCP PDCG
Sbjct:   175 IRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 212

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-060503-281 rnf19b "ring finger protein 19B" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query:     9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             IL D  L EKYE+F++RR L+ +PD RWCP PDCG
Sbjct:   166 ILDDPNLMEKYEEFLLRRCLASDPDCRWCPAPDCG 200

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G3XA82 RNF19B "IBR domain containing 3, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query:     6 IHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCG 43
             I  +L+D  L  KYE+FM+RR L+ +PD RWCP PDCG
Sbjct:   175 IRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 212

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50636	RN19A_MOUSE	6, ., 3, ., 2, ., -	0.6578	0.6031	0.0452	yes	N/A
Q9NV58	RN19A_HUMAN	6, ., 3, ., 2, ., -	0.6578	0.6031	0.0453	yes	N/A
Q2VJ60	RN19A_PIG	6, ., 3, ., 2, ., -	0.6578	0.6031	0.0453	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	63
pfam01485	63	pfam01485, IBR, IBR domain	6e-07
smart00647	64	smart00647, IBR, In Between Ring fingers	8e-07

>gnl|CDD|216524 pfam01485, IBR, IBR domain

 Score = 41.4 bits (97), Expect = 6e-07
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVF 46
          EKY    +++ +    + +WCPTPDCG + 
Sbjct: 1  EKYLKLSLKKYVESPKNLKWCPTPDCGNII 30

The IBR (In Between Ring fingers) domain is often found to occur between pairs of ring fingers (pfam00097). This domain has also been called the C6HC domain and DRIL (for double RING finger linked) domain. Proteins that contain two Ring fingers and an IBR domain (these proteins are also termed RBR family proteins) are thought to exist in all eukaryotic organisms. RBR family members play roles in protein quality control and can indirectly regulate transcription. Evidence suggests that RBR proteins are often parts of cullin-containing ubiquitin ligase complexes. The ubiquitin ligase Parkin is an RBR family protein whose mutations are involved in forms of familial Parkinson's disease. Length = 63

>gnl|CDD|214763 smart00647, IBR, In Between Ring fingers

 Score = 40.9 bits (96), Expect = 8e-07
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVF 46
          EKYE  ++   +   PD +WCP PDC    
Sbjct: 1  EKYERLLLESYVESNPDLKWCPAPDCSAAI 30

the domains occurs between pairs og RING fingers. Length = 64

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	63
smart00647	64	IBR In Between Ring fingers. the domains occurs be	99.42
PF01485	64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	99.25
KOG1815|consensus	444		99.19
KOG1814|consensus	445		98.34
KOG0006|consensus	446		97.3
KOG1812|consensus	384		95.88
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	87.69

>smart00647 IBR In Between Ring fingers

Probab=99.42  E-value=2e-13  Score=73.80  Aligned_cols=45  Identities=29%  Similarity=0.565  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhHHhhCCCeeEeCCCCCcceEEcc-CCCceeeEe-cCC
Q psy16544         17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQ-FLVPKHVLR-SLE   61 (63)
Q Consensus        17 ~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~-~~~~~~V~c-~~~   61 (63)
                      +||++|+++++|+.+++++|||+|+|+.++... ......|.| .|.
T Consensus         1 ~~y~~~~~~~~i~~~~~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~   47 (64)
T smart00647        1 EKYERLLLESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCG   47 (64)
T ss_pred             ChHHHHHHHHHHhcCCCccCCCCCCCcceEEecCCCCCCeeECCCCC
Confidence            489999999999999999999999999999997 457788999 553

the domains occurs between pairs og RING fingers

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.25  E-value=6.2e-13  Score=71.71  Aligned_cols=43  Identities=35%  Similarity=0.808  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCcee-eEec
Q psy16544         17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKH-VLRS   59 (63)
Q Consensus        17 ~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~-V~c~   59 (63)
                      +||++|++++||+.+++++|||+|+|+.++......... |+|+
T Consensus         1 eky~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~   44 (64)
T PF01485_consen    1 EKYQKFLLKRYLESDPNIRWCPNPDCEYIIEKDDGCNSPIVTCP   44 (64)
T ss_dssp             HCHHHCCCHS---S---CC--TTSST---ECS-SSTTS--CCTT
T ss_pred             ChHHHHHHHHHHHCCCCccCCCCCCCcccEEecCCCCCCeeECC
Confidence            589999999999999999999999999999998887664 8888

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.

>KOG1815|consensus

Probab=99.19  E-value=2e-11  Score=87.31  Aligned_cols=60  Identities=23%  Similarity=0.430  Sum_probs=52.8

Q ss_pred             ChhHHhhhcCChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEecCC
Q psy16544          2 KIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSLE   61 (63)
Q Consensus         2 ~~~~I~~ll~d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~~~   61 (63)
                      .+++|..++++.+..+||+++++++||+.+..++|||+|||++++.........|.|++.
T Consensus       126 ~~~~i~~~~s~~~~~~ky~~~i~~syve~~~~lkwCP~~~C~~av~~~~~~~~~v~C~~g  185 (444)
T KOG1815|consen  126 GEDTVEKLVSDKEDKEKYQRYILRSYVEDNVPLKWCPAPGCGLAVKFGSLESVEVDCGCG  185 (444)
T ss_pred             CCceeeeecCCHHHHHHHHHHHHHHHHhcCCccccCCCCCCCceeeccCCCccceeCCCC
Confidence            456777788654589999999999999999999999999999999988888899999874

>KOG1814|consensus

Probab=98.34  E-value=3.9e-07  Score=65.89  Aligned_cols=56  Identities=21%  Similarity=0.406  Sum_probs=48.6

Q ss_pred             ChhHHhhhcCChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEec
Q psy16544          2 KIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRS   59 (63)
Q Consensus         2 ~~~~I~~ll~d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~   59 (63)
                      ++.+++++|. .++++||+++++++.++.+.++.+||++.|+..+ ...++...++||
T Consensus       242 ~~g~vKelvg-~EL~arYe~l~lqk~l~~msdv~yCPr~~Cq~p~-~~d~~~~l~~Cs  297 (445)
T KOG1814|consen  242 PPGQVKELVG-DELFARYEKLMLQKTLELMSDVVYCPRACCQLPV-KQDPGRALAICS  297 (445)
T ss_pred             CchHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCChhhccCcc-ccCchhhhhhhc
Confidence            4668899996 5799999999999999999999999999999999 455555777776

>KOG0006|consensus

Probab=97.30  E-value=0.00022  Score=51.03  Aligned_cols=51  Identities=18%  Similarity=0.355  Sum_probs=42.8

Q ss_pred             hhhcCChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEecC
Q psy16544          7 HSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRSL   60 (63)
Q Consensus         7 ~~ll~d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~~   60 (63)
                      .++|. ++.+++||+|..+.+|-...- .-||+||||..+..++ +-|.|+|.-
T Consensus       290 F~ilg-~e~Y~rYQr~atEe~vlq~gG-VlCP~pgCG~gll~EP-D~rkvtC~~  340 (446)
T KOG0006|consen  290 FRILG-EEQYNRYQRYATEECVLQMGG-VLCPRPGCGAGLLPEP-DQRKVTCEG  340 (446)
T ss_pred             heecc-hhHHHHHHHhhhhhheeecCC-EecCCCCCCcccccCC-CCCcccCCC
Confidence            45665 678999999999999998774 4899999999999888 458899863

>KOG1812|consensus

Probab=95.88  E-value=0.0085  Score=42.90  Aligned_cols=47  Identities=19%  Similarity=0.433  Sum_probs=40.2

Q ss_pred             ChhHHhhhcCChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccC
Q psy16544          2 KIQYIHSILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQF   50 (63)
Q Consensus         2 ~~~~I~~ll~d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~   50 (63)
                      +.+....+|. +.+.++|++++.+.++...+.+ +||.|+|...+....
T Consensus       203 ~~~~c~~llt-~kl~e~~e~~~~e~~i~~~~~~-ycp~~~C~~l~~~~e  249 (384)
T KOG1812|consen  203 TLESCRKLLT-PKLREMWEQRLKEEVIPSLDRV-YCPYPRCSSLMSKTE  249 (384)
T ss_pred             CHHHHhhhcC-HHHHHHHHHHHHHHhhhhhhcc-cCCCCCchHhhhhhh
Confidence            4566778885 6899999999999999999999 999999998877644

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=87.69  E-value=0.3  Score=23.88  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=16.3

Q ss_pred             eeEeCCCCCcceEEccCCCceeeEec
Q psy16544         34 ARWCPTPDCGKVFDGQFLVPKHVLRS   59 (63)
Q Consensus        34 ~rWCP~p~C~~av~~~~~~~~~V~c~   59 (63)
                      |+|||.  |++......+....+.|.
T Consensus         1 m~FCp~--C~nlL~p~~~~~~~~~C~   24 (35)
T PF02150_consen    1 MRFCPE--CGNLLYPKEDKEKRVACR   24 (35)
T ss_dssp             --BETT--TTSBEEEEEETTTTEEES
T ss_pred             CeeCCC--CCccceEcCCCccCcCCC
Confidence            578986  999988876665555664

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	63
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	5e-04

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Length = 86

 Score = 33.8 bits (77), Expect = 5e-04
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 11 SDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVF 46
          S  +    +   +   VL  +P   WC    C   F
Sbjct: 2  SSGSSGALFHKKLTEGVLMRDPKFLWC--AQCSFGF 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	63
2jmo_A	80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	99.35
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	99.05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	96.73

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-15  Score=85.75  Aligned_cols=48  Identities=15%  Similarity=0.351  Sum_probs=42.0

Q ss_pred             hcCChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEec
Q psy16544          9 ILSDQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRS   59 (63)
Q Consensus         9 ll~d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~   59 (63)
                      +|+ +++++||++|++++||+.++ ++|||+|+|+++|+.++ +.+.|+|+
T Consensus         2 ~l~-~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~-~~~~v~C~   49 (80)
T 2jmo_A            2 HMG-EEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP-DQRKVTCE   49 (80)
T ss_dssp             CCC-CCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS-CTTSBCTT
T ss_pred             CCC-HHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC-CCCcCCCC
Confidence            353 56899999999999999997 99999999999999886 56779994

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=99.05  E-value=1.6e-12  Score=74.51  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEec
Q psy16544         12 DQALFEKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLRS   59 (63)
Q Consensus        12 d~~~~~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c~   59 (63)
                      +++++++|++++++++|+.+++++|||  +|+++++.++. ...|+|+
T Consensus         3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~-~~~v~C~   47 (86)
T 2ct7_A            3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE-QLEATCP   47 (86)
T ss_dssp             CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS-CSCEECT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC-CCceEeC
Confidence            456889999999999999999999999  99999998765 5679996

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.73  E-value=0.0007  Score=37.98  Aligned_cols=29  Identities=10%  Similarity=0.282  Sum_probs=25.3

Q ss_pred             ChhHHhhhcCChHHHHHHHHHHHHhHHhhC
Q psy16544          2 KIQYIHSILSDQALFEKYEDFMVRRVLSIE   31 (63)
Q Consensus         2 ~~~~I~~ll~d~~~~~kY~~~~~~~~V~~~   31 (63)
                      ++++|..+|. +++++||+++++++||+++
T Consensus        65 ~~~~i~~ll~-~~~~~ky~~~~~~~~v~~~   93 (94)
T 1wim_A           65 QENEIECMVA-AEIMQRYKKLQFERSGPSS   93 (94)
T ss_dssp             CHHHHHHHSC-HHHHHHHHHHHHHSSCSSC
T ss_pred             CHHHHHHHCC-HHHHHHHHHHHHHhhhccC
Confidence            5778999985 7899999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	63
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	98.51
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.67

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.2e-10  Score=59.99  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhHHhhCCCeeEeCCCCCcceEEccCCCceeeEe
Q psy16544         17 EKYEDFMVRRVLSIEPDARWCPTPDCGKVFDGQFLVPKHVLR   58 (63)
Q Consensus        17 ~kY~~~~~~~~V~~~~~~rWCP~p~C~~av~~~~~~~~~V~c   58 (63)
                      ++|++++++++|+.+|+++|||  +|+++|+.+++. ..++|
T Consensus         1 a~Y~~~l~~~~l~~~~~~k~CP--~C~~~~~~~~~~-~~~~C   39 (73)
T d2ct7a1           1 ALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYEREQ-LEATC   39 (73)
T ss_dssp             CSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCSC-SCEEC
T ss_pred             ChHHHHHHHHHHHHCCCCCCCC--CCCCEeEECCCC-CEEEc
Confidence            3689999999999999999996  699999998765 56778

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00038  Score=37.76  Aligned_cols=29  Identities=10%  Similarity=0.266  Sum_probs=23.9

Q ss_pred             ChhHHhhhcCChHHHHHHHHHHHHhHHhhC
Q psy16544          2 KIQYIHSILSDQALFEKYEDFMVRRVLSIE   31 (63)
Q Consensus         2 ~~~~I~~ll~d~~~~~kY~~~~~~~~V~~~   31 (63)
                      .+++|..+| ++++++||++|++++.+.++
T Consensus        65 ~~~~i~~ll-~~~~~~ky~~~~l~~~~~ss   93 (94)
T d1wima_          65 QENEIECMV-AAEIMQRYKKLQFERSGPSS   93 (94)
T ss_dssp             CHHHHHHHS-CHHHHHHHHHHHHHSSCSSC
T ss_pred             CHHHHHHhC-CHHHHHHHHHHHHHhccccC
Confidence            467888888 57899999999999887543