Psyllid ID: psy16592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MAKKSEPFHKKPKTPSAQTFSRSTWPIMRKLQIQELINEELQKMKEDRELNRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSIY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEEEEcccccccccccccHHcccHHHHccccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHcccccccccccEEEEEEEEEEEEEEEEEEEcccHHHHHHcHHHHHHHcccccccccccccEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
makksepfhkkpktpsaqtfsrstwpIMRKLQIQELINEELQKMKEDRELNRTYKKVLDLrseypdvprftVRKFNAVALWSWDMDMETCAICRNHLMDECILCqardaqdepppngctVAWAFSLKSSSIY
Flexible Loop (DISEMBL)
makksepfhkkpktpsaqtfsrstwpIMRKLQIQELINEELQKMKEDRELNRTYkkvldlrseypdvprftvRKFNAVALWSWDMDMETCAICRNHLMDECILCQArdaqdepppNGCTVAWAFSLKSSSIY
Low Complexity Region (SEG)
MAKKSEPFHKKPKTPSAQTFSRSTWPIMRKLQIQELINEELQKMKEDRELNRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSIY
Disordered region (IsUnstruct)
************************WPIMRKLQIQELIN************NRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQAR*********GCTVAWAFS*******
Disordered Region (DISOPRED)
************************WP**********************************************RKFNAVALWSWDMDMETCAICRNHLMDECIL*************GCTVAWAFSLKSSSIY
Disordered Region (DISEMBL)
********************SRSTWPIMRKLQIQELINEELQKMKEDRELNRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSIY
Disordered Region (DISPRO)
**********************STWPIMRKLQIQELINEELQKMKEDR*LNRT*KKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDA****PPNGCTVAWAFSLKSS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKSEPFHKKPKTPSAQTFSRSTWPIMRKLQIQELINEELQKMKEDRELNRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
O13959	107	RING-box protein pip1 OS=	yes	N/A	0.409	0.504	0.571	1e-12
Q9W5E1	108	RING-box protein 1A OS=Dr	yes	N/A	0.454	0.555	0.548	1e-12
Q8QG64	108	RING-box protein 1 OS=Sal	N/A	N/A	0.401	0.490	0.581	4e-12
P62878	108	E3 ubiquitin-protein liga	no	N/A	0.401	0.490	0.581	4e-12
P62877	108	E3 ubiquitin-protein liga	yes	N/A	0.401	0.490	0.581	4e-12
Q23457	110	RING-box protein 1 OS=Cae	yes	N/A	0.401	0.481	0.563	8e-12
Q54K33	104	RING-box protein 1 OS=Dic	yes	N/A	0.409	0.519	0.535	2e-11
Q940X7	118	RING-box protein 1a OS=Ar	yes	N/A	0.401	0.449	0.545	2e-11
Q9M2B0	115	RING-box protein 1b OS=Ar	no	N/A	0.401	0.460	0.527	3e-10
Q08273	121	RING-box protein HRT1 OS=	yes	N/A	0.409	0.446	0.482	9e-10

>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pip1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           PRF ++K+NAVALW WD+ ++ CAICRNH+MD CI CQA    D      CTVAW 
Sbjct: 19  PRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQAN--TDSAAAQECTVAWG 72

Component of E3 ubiquitin ligase SCF complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Seems to recruit the E2 ubiquitination enzyme, like UBC3/CDC34, to the complex and brings it into close proximity to the substrate. Component of the rik1-associated E3 ubiquitin ligase complex that shows ubiquitin ligase activity and is required for histone H3K9 methylation. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting swi6/HP1 to methylated histones which leads to transcriptional silencing within centromeric heterochromatin, telomeric regions and at the silent mating-type loci.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 62  SEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVA 121
           S   D  RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVA
Sbjct: 14  SSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVA 71

Query: 122 WA 123
           W 
Sbjct: 72  WG 73

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate. Required for the specific SCF-dependent proteolysis of CI, but not that of ARM, suggesting that it also participates in the selection of substrates inside the SCF complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVAW 
Sbjct: 21  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, like CDC34, to the complex and brings it into close proximity to the substrate. May be required for histone H3 and histone H4 ubiquitination in response to ultraviolet and for subsequent DNA repair. Promotes the neddylation of cul1, cul2, cul4 and cul4 via its interaction with ube2m.

Salmo salar (taxid: 8030)

>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVAW 
Sbjct: 21  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73

E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. The functional specificity of the E3 ubiquitin-protein ligase complexes depends on the variable substrate recognition components. As a component of the CSA complex promotes the ubiquitination of ERCC6 resulting in proteasomal degradation (By similarity). Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, like CDC34, to the complex and brings it into close proximity to the substrate. Probably also stimulates CDC34 autoubiquitination. May be required for histone H3 and histone H4 ubiquitination in response to ultraviolet and for subsequent DNA repair. Promotes the neddylation of CUL1, CUL2, CUL4 and CUL4 via its interaction with UBE2M.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVAW 
Sbjct: 21  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73

E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. The functional specificity of the E3 ubiquitin-protein ligase complexes depends on the variable substrate recognition components. As a component of the CSA complex promotes the ubiquitination of ERCC6 resulting in proteasomal degradation. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, like CDC34, to the complex and brings it into close proximity to the substrate. Probably also stimulates CDC34 autoubiquitination. May be required for histone H3 and histone H4 ubiquitination in response to ultraviolet and for subsequent DNA repair. Promotes the neddylation of CUL1, CUL2, CUL4 and CUL4 via its interaction with UBE2M.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 2/55 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K++AVALW+WD+ ++ CAICRNH+MD CI CQA  A      + CTVAW 
Sbjct: 23  RFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQA--AGLKDECTVAWG 75

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate (By similarity). Essential for meiosis, mitotic chromosomal condensation and cytokinesis. Involved in histone H3 phosphorylation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAF 124
           +F V+++NAVALW WD+ ++ CAICRNH+MD CI CQA  A +      CTVAW  
Sbjct: 17  KFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEE--CTVAWGI 70

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate.

Dictyostelium discoideum (taxid: 44689)

>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF ++K++AVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVAW 
Sbjct: 31  RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 83

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate. Promotes the neddylation of CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF ++K++AVALW+WD+ ++ CAICRNH+MD CI C A   Q       CTVAW 
Sbjct: 28  RFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLAN--QASATSEECTVAWG 80

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q08273|RBX1_YEAST RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRT1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAF 124
           RF ++K+ AVA WSWD+ ++ CAICRNH+M+ CI CQ +   D    N C  AW  
Sbjct: 34  RFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTD--TDNECVAAWGV 87

Component of E3 ubiquitin ligase SCF complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Seems to recruit the E2 ubiquitination enzyme, like CDC34/UBC3, to the complex and brings it into close proximity to the substrate. Also stimulates CDC34/UBC3 autoubiquitination and promotes the neddylation of CDC53.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
403223739	104	RING-box protein 1a [Theileria orientali	0.5	0.634	0.463	1e-12
392576562	103	ring box protein 1 [Tremella mesenterica	0.409	0.524	0.596	2e-12
321249045	142	ubiquitin-protein ligase [Cryptococcus g	0.477	0.443	0.523	5e-12
194764424	146	GF21496 [Drosophila ananassae] gi|190619	0.416	0.376	0.614	7e-12
225442096	122	PREDICTED: RING-box protein 1a isoform 1	0.416	0.450	0.578	7e-12
296413006	112	hypothetical protein [Tuber melanosporum	0.462	0.544	0.587	7e-12
58262962	142	ubiquitin-protein ligase [Cryptococcus n	0.409	0.380	0.571	1e-11
66359646	124	RBX1 ortholog, RING finger [Cryptosporid	0.613	0.653	0.428	1e-11
405118550	108	ubiquitin-protein ligase [Cryptococcus n	0.416	0.509	0.561	1e-11
84997187	101	hypothetical protein [Theileria annulata	0.424	0.554	0.508	1e-11

>gi|403223739|dbj|BAM41869.1| RING-box protein 1a [Theileria orientalis strain Shintoku]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 58  LDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDE---PP 114
           +D++++  D P+F V+K++AVA+WSW + ++ CAICRNH+MD CI CQA + QD      
Sbjct: 1   MDVKADTQDRPKFKVKKWSAVAVWSWQISVDNCAICRNHIMDLCIECQATNTQDSQTITD 60

Query: 115 PNGCTVAWA 123
             GCT++W 
Sbjct: 61  DEGCTISWG 69

Source: Theileria orientalis strain Shintoku

Species: Theileria orientalis

Genus: Theileria

Family: Theileriidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|392576562|gb|EIW69693.1| ring box protein 1 [Tremella mesenterica DSM 1558]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 3/57 (5%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAF 124
           PRF V+K+NAVALWSWD+ +E CAIC+NH+MD CI CQA    +    +GCTVAW  
Sbjct: 16  PRFEVKKWNAVALWSWDIVVENCAICKNHIMDLCIECQANQGAES---DGCTVAWGI 69

Source: Tremella mesenterica DSM 1558

Species: Tremella mesenterica

Genus: Tremella

Family: Tremellaceae

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|321249045|ref|XP_003191326.1| ubiquitin-protein ligase [Cryptococcus gattii WM276] gi|317457793|gb|ADV19539.1| Ubiquitin-protein ligase, putative [Cryptococcus gattii WM276]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 60  LRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCT 119
           L +E    PRF V+K+NAVALW+WD+ ++ CAIC++H+MD C+ CQA   Q     NGCT
Sbjct: 12  LAAENDKKPRFEVKKWNAVALWAWDIAVDNCAICKSHIMDLCMDCQAN--QGAESENGCT 69

Query: 120 VAWAF 124
           VAW  
Sbjct: 70  VAWGI 74

Source: Cryptococcus gattii WM276

Species: Cryptococcus gattii

Genus: Filobasidiella

Family: Tremellaceae

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|194764424|ref|XP_001964330.1| GF21496 [Drosophila ananassae] gi|190619255|gb|EDV34779.1| GF21496 [Drosophila ananassae]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 67  VPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           V RF V+K+NAVALWSWD+ ++ CAICRNH+MD CI CQA  A    P   CTVAW 
Sbjct: 57  VKRFEVKKWNAVALWSWDIVVDNCAICRNHIMDLCIECQANQAA--IPTEECTVAWG 111

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225442096|ref|XP_002272944.1| PREDICTED: RING-box protein 1a isoform 1 [Vitis vinifera] gi|297742989|emb|CBI35856.3| unnamed protein product [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 67  VPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           + RF  +K+NAVALW+WDM ++TCAICRNH+M+ CI CQA   Q     N CTVAW 
Sbjct: 33  IKRFETKKWNAVALWAWDMVVDTCAICRNHIMEHCIECQAN--QGSATSNECTVAWG 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296413006|ref|XP_002836209.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630018|emb|CAZ80400.1| unnamed protein product [Tuber melanosporum]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 62  SEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVA 121
           SE    PRF V+K+NAVALWSWD+ +E CAICRNH+MD CI CQA  A        CTVA
Sbjct: 18  SEPTKKPRFEVKKWNAVALWSWDIVVENCAICRNHIMDLCIECQANQAS--AVSEECTVA 75

Query: 122 WAF 124
           W  
Sbjct: 76  WGI 78

Source: Tuber melanosporum Mel28

Species: Tuber melanosporum

Genus: Tuber

Family: Tuberaceae

Order: Pezizales

Class: Pezizomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|58262962|ref|XP_568891.1| ubiquitin-protein ligase [Cryptococcus neoformans var. neoformans JEC21] gi|134108146|ref|XP_777271.1| hypothetical protein CNBB2560 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259958|gb|EAL22624.1| hypothetical protein CNBB2560 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223541|gb|AAW41584.1| ubiquitin-protein ligase, putative [Cryptococcus neoformans var. neoformans JEC21]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           PRF V+K+NAVALW+WD+ ++ CAIC++H+MD C+ CQA   Q     NGCTVAW 
Sbjct: 20  PRFEVKKWNAVALWAWDIAVDNCAICKSHIMDLCMDCQAN--QGAESENGCTVAWG 73

Source: Cryptococcus neoformans var. neoformans JEC21

Species: Cryptococcus neoformans

Genus: Filobasidiella

Family: Tremellaceae

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|66359646|ref|XP_627001.1| RBX1 ortholog, RING finger [Cryptosporidium parvum Iowa II] gi|46228449|gb|EAK89319.1| RBX1 ortholog, RING finger [Cryptosporidium parvum Iowa II]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 10/91 (10%)

Query: 35  ELINEEL--QKMKEDRELNRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAI 92
           E +NEE+  QK++E+   N +        +  P   RF ++K+NAVALWSWD+ ++ CAI
Sbjct: 7   EQVNEEMIDQKIEENNTANNSV-------NTEPGQKRFEIKKWNAVALWSWDIVVDNCAI 59

Query: 93  CRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           CRNH+MD CI CQA     +     CTV W 
Sbjct: 60  CRNHIMDLCIECQANTGSAQRSEE-CTVTWG 89

Source: Cryptosporidium parvum Iowa II

Species: Cryptosporidium parvum

Genus: Cryptosporidium

Family: Cryptosporidiidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|405118550|gb|AFR93324.1| ubiquitin-protein ligase [Cryptococcus neoformans var. grubii H99]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAF 124
           PRF V+K+NAVALW+WD+ ++ CAIC++H+MD C+ CQA   Q     NGCTVAW  
Sbjct: 20  PRFEVKKWNAVALWAWDIAVDNCAICKSHIMDLCMDCQAN--QGAESENGCTVAWGI 74

Source: Cryptococcus neoformans var. grubii H99

Species: Cryptococcus neoformans

Genus: Filobasidiella

Family: Tremellaceae

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|84997187|ref|XP_953315.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304311|emb|CAI76690.1| hypothetical protein, conserved [Theileria annulata]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 45/59 (76%), Gaps = 3/59 (5%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARD---AQDEPPPNGCTVAWA 123
           P+F V+K++AVA+WSW M ++ CAICRNH+MD+CI CQA++   +Q+     GCT++W 
Sbjct: 8   PKFVVKKWSAVAVWSWKMSVDNCAICRNHIMDQCIECQAKNPKESQEITEEEGCTISWG 66

Source: Theileria annulata strain Ankara

Species: Theileria annulata

Genus: Theileria

Family: Theileriidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
POMBASE|SPAC23H4.18c	107	rbx1 "RING-box protein 1" [Sch	0.537	0.663	0.455	1.4e-14
FB|FBgn0025638	108	Roc1a "Roc1a" [Drosophila mela	0.416	0.509	0.578	4.9e-14
UNIPROTKB|E1BL52	108	LOC780968 "Uncharacterized pro	0.393	0.481	0.592	4.9e-14
UNIPROTKB|E1BSR9	105	RBX1 "Uncharacterized protein"	0.393	0.495	0.592	1e-13
UNIPROTKB|Q2HJI9	108	RBX1 "Uncharacterized protein"	0.393	0.481	0.592	1e-13
UNIPROTKB|P62877	108	RBX1 "E3 ubiquitin-protein lig	0.393	0.481	0.592	1e-13
UNIPROTKB|G4MV42	119	MGG_08844 "RING-box protein 1"	0.393	0.436	0.592	1e-13
UNIPROTKB|Q8QG64	108	rbx1 "RING-box protein 1" [Sal	0.393	0.481	0.592	1e-13
MGI|MGI:1891829	108	Rbx1 "ring-box 1" [Mus musculu	0.393	0.481	0.592	1e-13
RGD|1308453	108	Rbx1 "ring-box 1, E3 ubiquitin	0.393	0.481	0.592	1e-13

POMBASE|SPAC23H4.18c rbx1 "RING-box protein 1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query:    44 MKEDRELNRTYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECIL 103
             M+++ +++   KK +++  + P  PRF ++K+NAVALW WD+ ++ CAICRNH+MD CI 
Sbjct:     1 MEDEMQID---KKEVEIEQK-P--PRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIE 54

Query:   104 CQARDAQDEPPPNGCTVAW 122
             CQA    D      CTVAW
Sbjct:    55 CQANT--DSAAAQECTVAW 71

GO:0000278 "mitotic cell cycle" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016568 "chromatin modification" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=TAS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

FB|FBgn0025638 Roc1a "Roc1a" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query:    66 DVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             D  RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    18 DKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0006508 "proteolysis" evidence=IMP;TAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|E1BL52 LOC780968 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q+      CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QESATSEECTVAW 72

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BSR9 RBX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q2HJI9 RBX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0045116 "protein neddylation" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IEA

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P62877 RBX1 "E3 ubiquitin-protein ligase RBX1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030891 "VCB complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0045116 "protein neddylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS;IDA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IDA

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IDA

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IDA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

UNIPROTKB|G4MV42 MGG_08844 "RING-box protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    32 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 83

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8QG64 rbx1 "RING-box protein 1" [Salmo salar (taxid:8030)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

MGI|MGI:1891829 Rbx1 "ring-box 1" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=IGI;ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008190 "eukaryotic initiation factor 4E binding" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO;ISS;IDA;TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS;IDA;IPI

GO:0019788 "NEDD8 ligase activity" evidence=ISO

GO:0030163 "protein catabolic process" evidence=IMP

GO:0030891 "VCB complex" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IDA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=ISO

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=ISO

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1308453 Rbx1 "ring-box 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
             RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct:    21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS--ATSEECTVAW 72

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IC;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0019788 "NEDD8 ligase activity" evidence=IEA;ISO

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030891 "VCB complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=ISO

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0045116 "protein neddylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940X7	RBX1A_ARATH	No assigned EC number	0.5454	0.4015	0.4491	yes	N/A
P62877	RBX1_HUMAN	6, ., 3, ., 2, ., -	0.5818	0.4015	0.4907	yes	N/A
O13959	RBX1_SCHPO	No assigned EC number	0.5714	0.4090	0.5046	yes	N/A
Q54K33	RBX1_DICDI	No assigned EC number	0.5357	0.4090	0.5192	yes	N/A
Q9W5E1	RBX1A_DROME	No assigned EC number	0.5483	0.4545	0.5555	yes	N/A
Q23457	RBX1_CAEEL	No assigned EC number	0.5636	0.4015	0.4818	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	7e-17
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-16

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 69.9 bits (171), Expect = 7e-17
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
            +  ++K++AVALWSWD+ ++ CAICRNH+M  C  CQ        P + C V W
Sbjct: 1   MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMT----PGDECPVVW 51

Length = 88

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 68.6 bits (168), Expect = 2e-16
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 7/54 (12%)

Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
           R  ++K+NAVALWSWD++ + CAICRNH    C  C++       P + C V W
Sbjct: 1   RVEIKKWNAVALWSWDIEDDVCAICRNHFDGTCPECKS-------PGDDCPVVW 47

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG2930|consensus	114		100.0
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	99.97
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.94
KOG1493|consensus	84		99.92
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.88
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	95.47
PHA02926	242	zinc finger-like protein; Provisional	80.07

>KOG2930|consensus

Probab=100.00  E-value=5.5e-34  Score=212.16  Aligned_cols=69  Identities=45%  Similarity=0.903  Sum_probs=62.7

Q ss_pred             CCCCCCCcccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         60 LRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        60 ~~~~~~~~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .++.++...||+||||||||+|+|||.+|+|||||||+|++|++||++. ++  +.++|.|+||+|||+||.
T Consensus        19 ~~s~~~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~-~~--~~~EC~VaWG~CNHaFH~   87 (114)
T KOG2930|consen   19 SSSNEGGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ-SA--TSEECTVAWGVCNHAFHF   87 (114)
T ss_pred             cccCCCCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCC-CC--CCCceEEEeeecchHHHH
Confidence            3444455899999999999999999999999999999999999999997 56  789999999999999994

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=99.97  E-value=2.9e-32  Score=195.44  Aligned_cols=60  Identities=40%  Similarity=0.906  Sum_probs=57.1

Q ss_pred             ccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         68 PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        68 ~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      |||+||+||+||+|+||+..|+|||||||||++||+||++.  +  |+++||+|||.|||+||.
T Consensus         1 ~kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~--~--~~~eC~v~wG~CnHaFH~   60 (88)
T COG5194           1 MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM--T--PGDECPVVWGVCNHAFHD   60 (88)
T ss_pred             CceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC--C--CCCcceEEEEecchHHHH
Confidence            68999999999999999999999999999999999999964  4  899999999999999994

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.94  E-value=1.5e-27  Score=170.43  Aligned_cols=57  Identities=26%  Similarity=0.753  Sum_probs=55.1

Q ss_pred             ccEEEEEEEEEEEeEEec-CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         68 PRFTVRKFNAVALWSWDM-DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        68 ~RfkIKkWnAVA~WsWDi-~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      |+|+||+||+||.|+||+ .+|+|||||+.|+++||+|+.       |||+||+|||.|+|+||+
T Consensus         1 mkv~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~-------Pgd~Cplv~g~C~H~FH~   58 (85)
T PF12861_consen    1 MKVKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKF-------PGDDCPLVWGKCSHNFHM   58 (85)
T ss_pred             CeeEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccC-------CCCCCceeeccCccHHHH
Confidence            789999999999999997 599999999999999999988       999999999999999997

>KOG1493|consensus

Probab=99.92  E-value=4.3e-26  Score=162.52  Aligned_cols=57  Identities=32%  Similarity=0.844  Sum_probs=55.7

Q ss_pred             ccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         68 PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        68 ~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      |+|+||+||+||.|+||..+++|||||++|+++||+|+.       |||+||+|||.|.|+||.
T Consensus         1 Mkvki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~-------PgDdCPLv~G~C~h~fh~   57 (84)
T KOG1493|consen    1 MKVKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKL-------PGDDCPLVWGYCLHAFHA   57 (84)
T ss_pred             CceEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcC-------CCCCCccHHHHHHHHHHH
Confidence            789999999999999999999999999999999999998       999999999999999995

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.88  E-value=2.7e-23  Score=141.45  Aligned_cols=56  Identities=45%  Similarity=0.987  Sum_probs=52.7

Q ss_pred             cEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         69 RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        69 RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ||+||+|++|+.|+||+.+|+||||+++|+++|++|++       ++++|++++|.|||.||.
T Consensus         1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~-------~~~~~~i~~~~C~H~FH~   56 (73)
T PF12678_consen    1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQA-------PQDECPIVWGPCGHIFHF   56 (73)
T ss_dssp             SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHH-------CTTTS-EEEETTSEEEEH
T ss_pred             CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcC-------CccccceEecccCCCEEH
Confidence            69999999999999999999999999999999999999       568899999999999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=95.47  E-value=0.0065  Score=36.81  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=17.9

Q ss_pred             CceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         88 ETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        88 D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      |.|+||...|.+      .          +=++.. .|||.||.
T Consensus         1 d~C~IC~~~~~~------~----------~~~~~l-~C~H~fh~   27 (44)
T PF13639_consen    1 DECPICLEEFED------G----------EKVVKL-PCGHVFHR   27 (44)
T ss_dssp             -CETTTTCBHHT------T----------SCEEEE-TTSEEEEH
T ss_pred             CCCcCCChhhcC------C----------CeEEEc-cCCCeeCH
Confidence            689999888866      1          112334 49999994

...

>PHA02926 zinc finger-like protein; Provisional

Probab=80.07  E-value=0.68  Score=39.17  Aligned_cols=33  Identities=12%  Similarity=0.030  Sum_probs=23.1

Q ss_pred             CCceeccccccccc-ccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         87 METCAICRNHLMDE-CILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        87 ~D~CAICRn~f~d~-CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ++.||||...+.+. ++.++.       .|     +...|+|+|.+
T Consensus       170 E~eCgICmE~I~eK~~~~eRr-------FG-----IL~~CnHsFCl  203 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRY-------FG-----LLDSCNHIFCI  203 (242)
T ss_pred             CCCCccCcccccccccccccc-------cc-----ccCCCCchHHH
Confidence            79999999877654 444433       12     66789999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
4a0k_B	117	Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp		2e-13
4a0c_D	98	Structure Of The Cand1-Cul4b-Rbx1 Complex Length =		3e-13
3dpl_R	106	Structural Insights Into Nedd8 Activation Of Cullin		3e-13
1u6g_B	108	Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le		3e-13
1ldj_B	90	Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu		4e-13
3dqv_R	106	Structural Insights Into Nedd8 Activation Of Cullin		2e-12
2lgv_A	100	Rbx1 Length = 100		8e-10
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		7e-06

>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 117

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW 
Sbjct: 30  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE--CTVAWG 82

>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 98

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW 
Sbjct: 11  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE--CTVAWG 63

>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation. Length = 106

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW 
Sbjct: 19  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE--CTVAWG 71

>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 108

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVAW 
Sbjct: 21  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 73

>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 90

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVAW 
Sbjct: 3   RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN--QASATSEECTVAWG 55

>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 106

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K+NAVALW+WD+ ++ CAICRNH+ D CI CQA  A        CTVAW 
Sbjct: 19  RFEVKKWNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATSEE--CTVAWG 71

>pdb|2LGV|A Chain A, Rbx1 Length = 100

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 69  RFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           RF V+K NA A  +WD+ ++ CAICRNH+MD CI CQA  A        CTVAW 
Sbjct: 13  RFEVKKSNASAQSAWDIVVDNCAICRNHIMDLCIECQANQA--SATSEECTVAWG 65

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 80  LWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWA 123
           +WSWD++ +TCAICR  +MD C+ CQA + Q++     C V W 
Sbjct: 8   MWSWDVECDTCAICRVQVMDACLRCQAENKQED-----CVVVWG 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-13
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	3e-10
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	1e-09

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 76  NAVALWSWDMDMETCAICRNHLMDECILCQARDAQDE 112
            +  +WSWD++ +TCAICR  +MD C+ CQA + Q++
Sbjct: 4   GSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQED 40

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 52.9 bits (126), Expect = 3e-10
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 62  SEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVA 121
           +      RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA   Q       CTVA
Sbjct: 23  NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA--NQASATSEECTVA 80

Query: 122 W 122
           W
Sbjct: 81  W 81

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 51.0 bits (121), Expect = 1e-09
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query: 61  RSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPP 115
            +      RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A      
Sbjct: 11  TNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.88
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.86
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.56
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.59
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.97
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	92.83
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	92.24
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	91.93
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	91.32
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	90.8
2ect_A	78	Ring finger protein 126; metal binding protein, st	90.43
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	89.7
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	89.4
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	89.2
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	87.89
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	87.37
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	86.72
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	86.56
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	86.53
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	85.13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	84.63
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	84.38
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	83.21
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	81.9
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	81.8
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	81.09
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	80.35

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.88  E-value=5.9e-24  Score=155.71  Aligned_cols=77  Identities=42%  Similarity=0.792  Sum_probs=20.8

Q ss_pred             cccccccCCCCCCCcccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         53 TYKKVLDLRSEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        53 ~~~~~~~~~~~~~~~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ..+.-+++++...+.+||+||+||+|+.|+||+.+|+|+||++.|+++|+.|+.+..+.  ++++|+++++.|+|.||.
T Consensus        14 ~~~gg~~~~~~~~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~--~~~~~~v~~~~C~H~FH~   90 (117)
T 4a0k_B           14 YFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA--TSEECTVAWGVCNHAFHF   90 (117)
T ss_dssp             --------------CCSEEEEEEEEEEEEEECCCC--------------------------------------------
T ss_pred             hhccCCCCCCCCCcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccc--cccccccccCCcCceEcH
Confidence            34445555666677899999999999999999999999999999999999999976665  799999999999999995

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.86  E-value=2.1e-22  Score=144.03  Aligned_cols=68  Identities=47%  Similarity=0.941  Sum_probs=56.9

Q ss_pred             CCCCCcccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         62 SEYPDVPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        62 ~~~~~~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ....+..||+||+|++|+.|+||+.+|+|+||++.|++.|+.|+.+..+.  ++++|+++++.|+|.||.
T Consensus        12 ~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~--~~~~~~~~~~~C~H~FH~   79 (106)
T 3dpl_R           12 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA--TSEECTVAWGVCNHAFHF   79 (106)
T ss_dssp             -----CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC-----CCCEEEETTSCEEEH
T ss_pred             ccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhcccccc--CCccceEeecccCcEECH
Confidence            34457899999999999999999999999999999999999999876555  899999999999999995

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.2e-16  Score=105.82  Aligned_cols=53  Identities=38%  Similarity=0.882  Sum_probs=49.3

Q ss_pred             EEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         74 KFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        74 kWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      +|++|+.|+||+.+|+|+||++.|++.|+.|+.+.     .+++++++.+.|+|.||.
T Consensus         2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~-----~~~~~~~~~~~C~H~FH~   54 (81)
T 2ecl_A            2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQAEN-----KQEDCVVVWGECNHSFHN   54 (81)
T ss_dssp             CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHT-----CTTTCCEEEETTSCEEEH
T ss_pred             CcceeEEeeecCCCCCCcccChhhhccCccccccc-----CCCceEEEeCCCCCccCh
Confidence            58999999999999999999999999999999954     578999999999999994

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.59  E-value=3e-05  Score=53.10  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=33.1

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .++.|+||...|.+....+.......  ......++...|+|.||.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~C~H~Fh~   67 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKA--LGPMVVGRLTKCSHAFHL   67 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSS--SCSSCCEEESSSCCEECH
T ss_pred             CCCcCccCChhhcCcccccccccccc--cCcccceecCCCCCcccH
Confidence            56899999999999987776643322  234466678899999994

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00016  Score=48.93  Aligned_cols=27  Identities=19%  Similarity=0.468  Sum_probs=21.8

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .++.|+||++.|+               +++.|+    .|+|.||.
T Consensus        14 ~i~~C~IC~~~i~---------------~g~~C~----~C~h~fH~   40 (74)
T 2ct0_A           14 AVKICNICHSLLI---------------QGQSCE----TCGIRMHL   40 (74)
T ss_dssp             SSCBCSSSCCBCS---------------SSEECS----SSCCEECH
T ss_pred             CCCcCcchhhHcc---------------cCCccC----CCCchhhH
Confidence            4699999999996               134665    89999995

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=92.83  E-value=0.033  Score=34.40  Aligned_cols=33  Identities=15%  Similarity=0.186  Sum_probs=23.1

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .+..|+||...|.++-             .++-.++.-.|||.||.
T Consensus         9 ~~~~C~IC~~~~~~~~-------------~~~~~~~~~~CgH~fc~   41 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIV-------------QNGRLIVSTECGHVFCS   41 (71)
T ss_dssp             TCCBCTTTCCBHHHHH-------------TTTCCEEECTTSCEEEH
T ss_pred             CCCCCcccChhhhccc-------------cccCCeEeCCCCChHhH
Confidence            4578999998887641             11234566789999984

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=92.24  E-value=0.06  Score=31.70  Aligned_cols=30  Identities=10%  Similarity=0.072  Sum_probs=20.0

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ..+.|+||...|.+               + +=+++.-.|+|.||.
T Consensus         4 ~~~~C~IC~~~~~~---------------~-~~~~~~~~CgH~fc~   33 (55)
T 2ecm_A            4 GSSGCPICLEDIHT---------------S-RVVAHVLPCGHLLHR   33 (55)
T ss_dssp             CCCSCTTTCCCCCT---------------T-TSCEEECTTSCEEET
T ss_pred             CCCcCcccChhhcC---------------C-CcCeEecCCCCcccH
Confidence            46788888877642               1 123455679999995

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=91.93  E-value=0.057  Score=33.41  Aligned_cols=29  Identities=21%  Similarity=0.270  Sum_probs=18.3

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ..+.|+||...|...               +  .++.-.|||.||.
T Consensus        13 ~~~~C~IC~~~~~~~---------------~--~~~~~~C~H~fc~   41 (69)
T 2kiz_A           13 TEEKCTICLSILEEG---------------E--DVRRLPCMHLFHQ   41 (69)
T ss_dssp             CCCSBTTTTBCCCSS---------------S--CEEECTTSCEEEH
T ss_pred             CCCCCeeCCccccCC---------------C--cEEEeCCCCHHHH
Confidence            357899998766321               1  1233459999984

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=91.32  E-value=0.063  Score=32.24  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=22.1

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ++..|+||...+.++-.            + +-.++...|||.||.
T Consensus         2 ~~~~C~IC~~~~~~~~~------------~-~~~~~~~~CgH~fc~   34 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQ------------N-GRLIVSTECGHVFCS   34 (64)
T ss_dssp             CCCBCTTTCCBHHHHHH------------T-TCCEEEETTSCEEEH
T ss_pred             CCCCCCccChhhhCccc------------c-CCCEEeCCCCCchhH
Confidence            35689999988866431            1 113456789999984

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.80  E-value=0.071  Score=32.47  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=22.6

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ....|+||...|.++-.             ..-.++.-.|||.||.
T Consensus        14 ~~~~C~IC~~~~~~~~~-------------~~~~~~~~~CgH~fc~   46 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQ-------------NGRLIVSTECGHVFCS   46 (69)
T ss_dssp             CCCCCTTTCCCHHHHTT-------------TTCCEEECSSSCEEEH
T ss_pred             CCCCCcccCcccccccc-------------ccCCeEeCCCCChhcH
Confidence            46789999988875421             1223456789999984

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=90.43  E-value=0.095  Score=33.13  Aligned_cols=29  Identities=10%  Similarity=0.063  Sum_probs=18.6

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ..+.|+||...|.+.               +  .++.-.|+|.||.
T Consensus        14 ~~~~C~IC~~~~~~~---------------~--~~~~~~C~H~fc~   42 (78)
T 2ect_A           14 SGLECPVCKEDYALG---------------E--SVRQLPCNHLFHD   42 (78)
T ss_dssp             SSCCCTTTTSCCCTT---------------S--CEEECTTSCEEET
T ss_pred             CCCCCeeCCccccCC---------------C--CEEEeCCCCeecH
Confidence            457899998876432               1  1222359999985

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=89.70  E-value=0.1  Score=32.02  Aligned_cols=26  Identities=19%  Similarity=0.220  Sum_probs=17.1

Q ss_pred             CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .+.|+||...+.++                   ++.-.|||.||.
T Consensus         5 ~~~C~IC~~~~~~~-------------------~~~~~C~H~fc~   30 (68)
T 1chc_A            5 AERCPICLEDPSNY-------------------SMALPCLHAFCY   30 (68)
T ss_dssp             CCCCSSCCSCCCSC-------------------EEETTTTEEEST
T ss_pred             CCCCeeCCccccCC-------------------cEecCCCCeeHH
Confidence            56788887765421                   234468999985

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.40  E-value=0.17  Score=31.83  Aligned_cols=29  Identities=7%  Similarity=0.133  Sum_probs=19.5

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ..+.|+||...|.+.               +  .++.-.|+|.||.
T Consensus        22 ~~~~C~IC~~~~~~~---------------~--~~~~l~C~H~fh~   50 (75)
T 1x4j_A           22 EQTLCVVCMCDFESR---------------Q--LLRVLPCNHEFHA   50 (75)
T ss_dssp             SCCEETTTTEECCBT---------------C--EEEEETTTEEEET
T ss_pred             CCCCCeECCcccCCC---------------C--eEEEECCCCHhHH
Confidence            467899998776421               1  2344469999995

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.20  E-value=0.12  Score=31.45  Aligned_cols=13  Identities=31%  Similarity=0.675  Sum_probs=9.5

Q ss_pred             CCCceeccccccc
Q psy16592         86 DMETCAICRNHLM   98 (132)
Q Consensus        86 ~~D~CAICRn~f~   98 (132)
                      .+..|.||...|.
T Consensus        19 ~~~~C~IC~~~~~   31 (63)
T 2ysj_A           19 EEVICPICLDILQ   31 (63)
T ss_dssp             CCCBCTTTCSBCS
T ss_pred             cCCCCCcCCchhC
Confidence            3578999987664

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=87.89  E-value=0.25  Score=32.64  Aligned_cols=29  Identities=10%  Similarity=0.102  Sum_probs=18.7

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .++.|+||...|.+               ++  .++.-.|||.||.
T Consensus        39 ~~~~C~IC~~~~~~---------------~~--~~~~l~C~H~Fh~   67 (91)
T 2l0b_A           39 QEMCCPICCSEYVK---------------GD--VATELPCHHYFHK   67 (91)
T ss_dssp             SCSEETTTTEECCT---------------TC--EEEEETTTEEEEH
T ss_pred             CCCCCcccChhhcC---------------CC--cEEecCCCChHHH
Confidence            35779999876642               12  2333459999994

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.37  E-value=0.25  Score=31.45  Aligned_cols=29  Identities=10%  Similarity=0.149  Sum_probs=18.4

Q ss_pred             CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ...|.||...|.+               ++..|++. .|||.||.
T Consensus        15 ~~~C~IC~~~~~~---------------~~~~~~~~-~CgH~fC~   43 (88)
T 2ct2_A           15 VLECPICMESFTE---------------EQLRPKLL-HCGHTICR   43 (88)
T ss_dssp             CCBCTTTCCBCCT---------------TSSCEEEC-SSSCEEEH
T ss_pred             CCCCccCCccccc---------------cCCCeEEC-CCCChhhH
Confidence            4679998876643               12224443 79999984

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=86.72  E-value=0.2  Score=30.71  Aligned_cols=14  Identities=21%  Similarity=0.655  Sum_probs=9.1

Q ss_pred             CCCceecccc-cccc
Q psy16592         86 DMETCAICRN-HLMD   99 (132)
Q Consensus        86 ~~D~CAICRn-~f~d   99 (132)
                      ++..|.||.. .+.+
T Consensus         2 ~~~~C~IC~~~~~~~   16 (65)
T 1g25_A            2 DDQGCPRCKTTKYRN   16 (65)
T ss_dssp             CTTCCSTTTTHHHHC
T ss_pred             CCCcCCcCCCCccCC
Confidence            4567888877 5533

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.56  E-value=0.22  Score=30.77  Aligned_cols=13  Identities=31%  Similarity=0.618  Sum_probs=9.7

Q ss_pred             CCceecccccccc
Q psy16592         87 METCAICRNHLMD   99 (132)
Q Consensus        87 ~D~CAICRn~f~d   99 (132)
                      ...|.||...|.+
T Consensus        20 ~~~C~IC~~~~~~   32 (73)
T 2ysl_A           20 EVICPICLDILQK   32 (73)
T ss_dssp             CCBCTTTCSBCSS
T ss_pred             CCEeccCCcccCC
Confidence            5789999877653

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=86.53  E-value=0.15  Score=32.36  Aligned_cols=13  Identities=31%  Similarity=0.751  Sum_probs=9.3

Q ss_pred             CCceecccccccc
Q psy16592         87 METCAICRNHLMD   99 (132)
Q Consensus        87 ~D~CAICRn~f~d   99 (132)
                      +..|.||...|.+
T Consensus        15 ~~~C~IC~~~~~~   27 (74)
T 2yur_A           15 ELLCLICKDIMTD   27 (74)
T ss_dssp             GGSCSSSCCCCTT
T ss_pred             CCCCcCCChHHhC
Confidence            4678888777654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.13  E-value=0.18  Score=31.56  Aligned_cols=13  Identities=38%  Similarity=0.922  Sum_probs=8.9

Q ss_pred             CCceecccccccc
Q psy16592         87 METCAICRNHLMD   99 (132)
Q Consensus        87 ~D~CAICRn~f~d   99 (132)
                      ...|.||...|.+
T Consensus        15 ~~~C~IC~~~~~~   27 (72)
T 2djb_A           15 YILCSICKGYLID   27 (72)
T ss_dssp             GGSCTTTSSCCSS
T ss_pred             CCCCCCCChHHHC
Confidence            4678888766644

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.63  E-value=0.3  Score=30.11  Aligned_cols=11  Identities=36%  Similarity=0.785  Sum_probs=7.9

Q ss_pred             CCceecccccc
Q psy16592         87 METCAICRNHL   97 (132)
Q Consensus        87 ~D~CAICRn~f   97 (132)
                      ...|.||...+
T Consensus        15 ~~~C~IC~~~~   25 (70)
T 2ecn_A           15 EEECCICMDGR   25 (70)
T ss_dssp             CCCCSSSCCSC
T ss_pred             CCCCeeCCcCc
Confidence            56788887654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.38  E-value=0.41  Score=29.82  Aligned_cols=13  Identities=31%  Similarity=0.736  Sum_probs=9.8

Q ss_pred             CCCceeccccccc
Q psy16592         86 DMETCAICRNHLM   98 (132)
Q Consensus        86 ~~D~CAICRn~f~   98 (132)
                      ....|.||...+.
T Consensus        14 ~~~~C~IC~~~~~   26 (71)
T 2d8t_A           14 TVPECAICLQTCV   26 (71)
T ss_dssp             SCCBCSSSSSBCS
T ss_pred             CCCCCccCCcccC
Confidence            4578999987763

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=83.21  E-value=0.26  Score=32.59  Aligned_cols=13  Identities=23%  Similarity=0.483  Sum_probs=9.4

Q ss_pred             CCceecccccccc
Q psy16592         87 METCAICRNHLMD   99 (132)
Q Consensus        87 ~D~CAICRn~f~d   99 (132)
                      ...|.||...|.+
T Consensus        22 ~~~C~IC~~~~~~   34 (99)
T 2y43_A           22 LLRCGICFEYFNI   34 (99)
T ss_dssp             HTBCTTTCSBCSS
T ss_pred             CCCcccCChhhCC
Confidence            4678888877654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=81.90  E-value=0.4  Score=32.22  Aligned_cols=13  Identities=23%  Similarity=0.708  Sum_probs=8.6

Q ss_pred             CCceecccccccc
Q psy16592         87 METCAICRNHLMD   99 (132)
Q Consensus        87 ~D~CAICRn~f~d   99 (132)
                      +..|.||...|.+
T Consensus        15 ~~~C~IC~~~~~~   27 (108)
T 2ckl_A           15 HLMCVLCGGYFID   27 (108)
T ss_dssp             GTBCTTTSSBCSS
T ss_pred             cCCCccCChHHhC
Confidence            4678888766643

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.80  E-value=0.49  Score=27.83  Aligned_cols=14  Identities=21%  Similarity=0.610  Sum_probs=10.5

Q ss_pred             CCCceecccccccc
Q psy16592         86 DMETCAICRNHLMD   99 (132)
Q Consensus        86 ~~D~CAICRn~f~d   99 (132)
                      ....|.||...+.+
T Consensus        14 ~~~~C~IC~~~~~~   27 (58)
T 2ecj_A           14 VEASCSVCLEYLKE   27 (58)
T ss_dssp             CCCBCSSSCCBCSS
T ss_pred             cCCCCccCCcccCc
Confidence            35789999887754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=81.09  E-value=0.56  Score=27.44  Aligned_cols=29  Identities=17%  Similarity=0.092  Sum_probs=18.2

Q ss_pred             CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .+.|+||...|.+               + +-++....|||.||.
T Consensus         5 ~~~C~IC~~~~~~---------------~-~~~~~~~~C~H~f~~   33 (55)
T 1iym_A            5 GVECAVCLAELED---------------G-EEARFLPRCGHGFHA   33 (55)
T ss_dssp             SCCCTTTCCCCCT---------------T-SCCEECSSSCCEECT
T ss_pred             CCcCccCCccccC---------------C-CceEECCCCCCcccH
Confidence            5678888876632               1 122333369999995

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=80.35  E-value=0.39  Score=30.01  Aligned_cols=13  Identities=38%  Similarity=0.738  Sum_probs=10.1

Q ss_pred             CCceecccccccc
Q psy16592         87 METCAICRNHLMD   99 (132)
Q Consensus        87 ~D~CAICRn~f~d   99 (132)
                      +..|.||...|.+
T Consensus        12 ~~~C~IC~~~~~~   24 (79)
T 2egp_A           12 EVTCPICLELLTE   24 (79)
T ss_dssp             CCEETTTTEECSS
T ss_pred             CCCCcCCCcccCC
Confidence            5689999887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	9e-13

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 9e-13
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 68  PRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAW 122
            RF V+K+NAVALW+WD+ ++ CAICRNH+MD CI CQA  A        CTVAW
Sbjct: 2   KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE--CTVAW 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.76
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.2
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	92.79
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	91.03
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	90.17

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.2e-19  Score=120.98  Aligned_cols=63  Identities=51%  Similarity=1.028  Sum_probs=55.3

Q ss_pred             cccEEEEEEEEEEEeEEecCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         67 VPRFTVRKFNAVALWSWDMDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        67 ~~RfkIKkWnAVA~WsWDi~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      +.||+||+||||+.|+||+.+|.|+||++.++++|+.|+......  .+.+|+++.+.|||.||.
T Consensus         1 ~~~~~ik~~~av~~w~~d~~~d~C~IC~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~C~H~FH~   63 (88)
T d3dplr1           1 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA--TSEECTVAWGVCNHAFHF   63 (88)
T ss_dssp             CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC-----CCCEEEETTSCEEEH
T ss_pred             CCceEEeeEEEEEEEeecCCCCcCEEccchhhCcccccccccccc--ccccCCeEEccccCcccH
Confidence            368999999999999999999999999999999999998876544  678999999999999994

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=7.6e-05  Score=50.16  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=32.3

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .++.|+||...|.+.-..........  .++++.+..-.|||.||.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~--~~~~~~~~~~~CgH~FH~   67 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKA--LGPMVVGRLTKCSHAFHL   67 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSS--SCSSCCEEESSSCCEECH
T ss_pred             ccccccchhheecccccccccccccc--cccccceEECCCCChhhH
Confidence            36889999999876654444432222  567888889999999995

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.016  Score=35.53  Aligned_cols=32  Identities=13%  Similarity=0.166  Sum_probs=19.7

Q ss_pred             cCCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         85 MDMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        85 i~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ++++.|+||...+.               .+.+..++.-.|||.||.
T Consensus         1 ~dd~~CpIC~~~~~---------------~~~~~~~~~~~C~H~fc~   32 (65)
T d1g25a_           1 MDDQGCPRCKTTKY---------------RNPSLKLMVNVCGHTLCE   32 (65)
T ss_dssp             CCTTCCSTTTTHHH---------------HCSSCCEEECTTCCCEEH
T ss_pred             CCCCCCCcCCceee---------------cCCceEEEeCccChHhhH
Confidence            35677888765321               123444555679999984

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=91.03  E-value=0.026  Score=34.67  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=18.7

Q ss_pred             CCCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         86 DMETCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        86 ~~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      .-|.|+||...|.+.                   ++.-.|||.||.
T Consensus         4 ~~d~C~IC~~~~~~~-------------------~~~~~C~H~Fc~   30 (68)
T d1chca_           4 VAERCPICLEDPSNY-------------------SMALPCLHAFCY   30 (68)
T ss_dssp             CCCCCSSCCSCCCSC-------------------EEETTTTEEEST
T ss_pred             CCCCCccCCcCccCC-------------------cEEeCCCCcCcH
Confidence            357899998877432                   133469999985

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=90.17  E-value=0.043  Score=32.87  Aligned_cols=29  Identities=17%  Similarity=0.137  Sum_probs=18.3

Q ss_pred             CCceecccccccccccccccccCCCCCCCCCCeeEEEeccccccc
Q psy16592         87 METCAICRNHLMDECILCQARDAQDEPPPNGCTVAWAFSLKSSSI  131 (132)
Q Consensus        87 ~D~CAICRn~f~d~CpeCQan~~~~~~pgddCpVvwG~CgHsFH~  131 (132)
                      ++.|+||...|.+               ++. .+....|||.||.
T Consensus         5 ~~~C~ICl~~~~~---------------~~~-~~~l~~C~H~Fh~   33 (55)
T d1iyma_           5 GVECAVCLAELED---------------GEE-ARFLPRCGHGFHA   33 (55)
T ss_dssp             SCCCTTTCCCCCT---------------TSC-CEECSSSCCEECT
T ss_pred             CCCCeEECccccC---------------CCE-EEEeCCCCCcccH
Confidence            4568888877652               222 2223469999995