Psyllid ID: psy16607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------
Protein Sequence
MSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHcccHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHccHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEccccccHcHHHHHHHccccEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccEEcccccccccHHHHHHcHccHccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHcccccccccccccEcccccEEEEccccHcccccccEEEHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mstpgsaptatvDSMFYAVDHFHKRNFEKCAAICTELlaknpydkaAWTLKMRsltsqlsvddleaeeegiadsvldtntiataarpgtslktaandqqpistsvmstpgsaptatvDSMFYAVDHFHKRNFEKCAAICTELlaknpydkaAWTLKMRsltsqlsvddleaeeegiadsvldtntiataarpgtslktaavtapaltsrprtesgrpvsgvvrpgtlasrggtleqslktprtaksarpltSQAARTIRLGTasmlsqpdgpfiqvSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVEStkacefrdwwwkvqlgkcyFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRldqpiraidigrnaldcypnevTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGvnhfyndqPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIitecspfsfsthTSYLFIQGISDTRLAIQCLHLALSidsshglsqnNLAVLEAREGHIERASTYLQAAaasspylyetHYNQAVISNLVSVIP
Flexible Loop (DISEMBL)
mstpgsaptatvDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGiadsvldtnTIATaarpgtslktaandqqpistsvmstpgsAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGiadsvldtntiataarpgtslktaavtapaltsrprtesgrpvsgvvrpgtlasrggtleqslktprtaksarpltsqAARTIRLGTasmlsqpdgpfIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Low Complexity Region (SEG)
MSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Disordered region (IsUnstruct)
***********VDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLT***********************************************************TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLT**************************************************************************************************************PFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV**
Disordered Region (DISOPRED)
************DSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSL**************************DSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAAR***********************GRPVSGVV*********************AKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Disordered Region (DISEMBL)
*********ATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAANDQQ*************PTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAP**************SGVVRPGTLASR*********************SQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Disordered Region (DISPRO)
**********TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARP****************************TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATA**************************RPVS*VV*PGT*********************RPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	677	2.2.26 [Sep-21-2011]
Q8VD72	515	Tetratricopeptide repeat	yes	N/A	0.654	0.860	0.498	1e-135
Q8TAM2	541	Tetratricopeptide repeat	no	N/A	0.580	0.726	0.505	1e-133
Q96RK4	519	Bardet-Biedl syndrome 4 p	no	N/A	0.345	0.450	0.252	4e-06
Q96301	914	Probable UDP-N-acetylgluc	yes	N/A	0.369	0.273	0.221	9e-06
O82422	944	Probable UDP-N-acetylgluc	N/A	N/A	0.369	0.264	0.217	3e-05
Q1JQ97	519	Bardet-Biedl syndrome 4 p	no	N/A	0.339	0.443	0.249	4e-05
A1Z8E9	486	Bardet-Biedl syndrome 4 p	no	N/A	0.326	0.454	0.222	4e-05
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	N/A	0.369	0.268	0.214	8e-05
Q8C1Z7	520	Bardet-Biedl syndrome 4 p	no	N/A	0.345	0.45	0.252	0.0002
Q6YZI0	927	Probable UDP-N-acetylgluc	yes	N/A	0.369	0.269	0.217	0.0004

>sp|Q8VD72|TTC8_MOUSE Tetratricopeptide repeat protein 8 OS=Mus musculus GN=Ttc8 PE=2 SV=1

 Score =  483 bits (1244), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/465 (49%), Positives = 321/465 (69%), Gaps = 22/465 (4%)

Query: 117 VDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDK----------AAWTLKMRSLTSQLSV 166
           ++ +  A  +F +R F+ CA +CT++L K+PYD+          AAW LK R+LT  + +
Sbjct: 5   MEPLLRAWSYFRRRKFQLCADLCTQMLEKSPYDQEPAPDLPVSQAAWILKARALTEMVYI 64

Query: 167 DDLEAEEEGIADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSGVVR 223
           D+++ ++EGIA+ +LD N IA   RPGTSLK   T     P    RP T++GRP++G +R
Sbjct: 65  DEIDVDQEGIAEMILDENAIAQVPRPGTSLKLPGTNQTGGPTQAVRPITQAGRPITGFLR 124

Query: 224 PGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK 283
           P T + R GT+EQ+++TPRTA +ARP+TS + R +RLGTASML+ PDGPFI +SRLNL K
Sbjct: 125 PSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTK 184

Query: 284 YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREA 343
           Y++   +AK LFEY+ HHENDV  A+DLA  ST+  +++DWWWKVQ+GKCY+ LG+ REA
Sbjct: 185 YSQKPKLAKALFEYILHHENDVKMALDLASLSTEYSQYKDWWWKVQIGKCYYRLGMYREA 244

Query: 344 QQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403
           ++QF SAL Q   ++ F+ + +VYI LDQP+ A+++ +  LD +P EVT++  +ARI+E 
Sbjct: 245 EKQFKSALKQQEMVDTFLYLAKVYIILDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEE 304

Query: 404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN 463
           +NN   + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRRLLQMG+YN +LFN
Sbjct: 305 MNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGVYNCQLFN 364

Query: 464 NLALCCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAILNALSTSVYNDQPEVA 522
           NL LCCFY+QQYDM +T FERALSLA N E AADVWYN+ H+A+    +         +A
Sbjct: 365 NLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAVGIGDTN--------LA 416

Query: 523 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
              +R  L    ++AE +NNLA+        +      + A SLA
Sbjct: 417 HQCFRLALVHNNHHAEAYNNLAVLEMRKGHVEQARALLQTASSLA 461

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.
Mus musculus (taxid: 10090)

>sp|Q8TAM2|TTC8_HUMAN Tetratricopeptide repeat protein 8 OS=Homo sapiens GN=TTC8 PE=1 SV=2

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 219/433 (50%), Positives = 305/433 (70%), Gaps = 40/433 (9%)

Query: 114 TATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDK----------AAWTLKMRSLTSQ 163
           ++ ++ +  A  +F +R F+ CA +CT++L K+PYD+          AAW LK R+LT  
Sbjct: 2   SSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQEPDPELPVHQAAWILKARALTEM 61

Query: 164 LSVDDLEAEEEGIADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSG 220
           + +D+++ ++EGIA+ +LD N IA   RPGTSLK   T     P+   RP T++GRP++G
Sbjct: 62  VYIDEIDVDQEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITG 121

Query: 221 VVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLN 280
            +RP T + R GT+EQ+++TPRTA +ARP+TS + R +RLGTASML+ PDGPFI +SRLN
Sbjct: 122 FLRPSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLN 181

Query: 281 LAKYARDKTVAKYLFEYLYHHENDVAS--------------------------AMDLAVE 314
           L KY++   +AK LFEY++HHENDV +                          A+DLA  
Sbjct: 182 LTKYSQKPKLAKALFEYIFHHENDVKTIHLEDVVLHLGIYPFLLRNKNHIEKNALDLAAL 241

Query: 315 STKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPI 374
           ST+  +++DWWWKVQ+GKCY+ LG+ REA++QF SAL Q   ++ F+ + +VY+ LDQP+
Sbjct: 242 STEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPV 301

Query: 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434
            A+++ +  LD +P EVT++  +ARI+E +NNM  + +YYK +LK+D T +EAIACIG N
Sbjct: 302 TALNLFKQGLDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSN 361

Query: 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-EN 493
           HFY+DQPE+AL FYRRLLQMG+YN +LFNNL LCCFY+QQYDM +T FERALSLA N E 
Sbjct: 362 HFYSDQPEIALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEE 421

Query: 494 AADVWYNISHVAI 506
           AADVWYN+ HVA+
Sbjct: 422 AADVWYNLGHVAV 434

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Homo sapiens (taxid: 9606)

>sp|Q96RK4|BBS4_HUMAN Bardet-Biedl syndrome 4 protein OS=Homo sapiens GN=BBS4 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 39/273 (14%)

Query: 288 KTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQF 347
           K VA+ LF    H      +A+++  E+ K  + +DW     LG CY  L    +AQ Q 
Sbjct: 105 KQVARSLFLLGKH-----KAAIEVYNEAAKLNQ-KDWEISHNLGVCYIYLKQFNKAQDQL 158

Query: 348 NSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA--------- 398
           ++ALN       +I + ++++      +AI++ + A++  P    ++T +          
Sbjct: 159 HNALNLNRHDLTYIMLGKIHLLEGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIY 218

Query: 399 -RIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457
            + FE L N           L  D T  +AI   G     +   +VAL  YR +      
Sbjct: 219 QKAFEHLGNA----------LTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVVACAVPE 268

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI--------LNA 509
           +  L+NN+ +C F  ++Y   ++C +RA  LA  +    + YN+  V +         + 
Sbjct: 269 SPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD--WKILYNLGLVHLTMQQYASAFHF 326

Query: 510 LSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN 542
           LS ++ N QP++  L+   LL + L N E   N
Sbjct: 327 LSAAI-NFQPKMGELY--MLLAVALTNLEDIEN 356

May be required for the dynein-mediated transport of pericentriolar proteins to the centrosome. Required for microtubule anchoring at the centrosome but not for microtubule nucleation. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Homo sapiens (taxid: 9606)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 30/280 (10%)

Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL- 451
           ++T++    +   N    ++ Y   LK D     A   +GV +    Q + AL  Y +  
Sbjct: 154 VLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAA 213

Query: 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-LNAL 510
           L+  +Y AE + N+ +        +M +TC+ER L+++ N   A      +++AI L  L
Sbjct: 214 LERPMY-AEAYCNMGVIYKNRGDLEMAITCYERCLAVSPNFEIAK-----NNMAIALTDL 267

Query: 511 STSV-YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569
            T V         + +Y++ L    + A+   NL +      ++DM +  +E  L+   N
Sbjct: 268 GTKVKLEGDVTQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFN 325

Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629
            + A+   N+                    +  +   +   A++C  +ALSI  +   S 
Sbjct: 326 PHCAEACNNLG-------------------VLYKDRDNLDKAVECYQMALSIKPNFAQSL 366

Query: 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           NNL V+   +G ++ A++ ++ A  ++P   E   N  V+
Sbjct: 367 NNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVL 406

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 121/280 (43%), Gaps = 30/280 (10%)

Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL- 451
           ++T++    +   N    ++ Y   L+ D+    A   +GV +    Q +VAL  Y +  
Sbjct: 145 VLTDLGTSLKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAA 204

Query: 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-LNAL 510
           L+  LY AE + N+ +      + D  + C++R L+++ N   A      +++AI L  L
Sbjct: 205 LERPLY-AEAYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAK-----NNMAIALTDL 258

Query: 511 STSV-YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569
            T V         + +Y++ L    + A+   NL +       ++M +  +E  L+L  N
Sbjct: 259 GTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYE--LALHFN 316

Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629
              A+   N+                    +  +   +   A++C  +ALSI  +   S 
Sbjct: 317 PRCAEACNNLG-------------------VIYKDRDNLDKAVECYQMALSIKPNFSQSL 357

Query: 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           NNL V+   +G ++ A++ ++ A  ++P   E + N  V+
Sbjct: 358 NNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVL 397

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q1JQ97|BBS4_BOVIN Bardet-Biedl syndrome 4 protein homolog OS=Bos taurus GN=BBS4 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 39/269 (14%)

Query: 288 KTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQF 347
           K VA+ LF    H      +A+++  E+ K  + +DW     LG CY  L    +AQ Q 
Sbjct: 105 KQVARSLFLLGKHK-----AAIEVYNEAAKLNQ-KDWEICHNLGVCYIYLKQFDKAQDQL 158

Query: 348 NSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA--------- 398
           ++AL+       +I + ++++      +AI+I + A++  P    ++T +          
Sbjct: 159 HNALHLNRHDLTYIMLGKIFLLKGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIY 218

Query: 399 -RIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457
            + FE L N           L  D T  +AI   G     +   +VAL  Y+ +    + 
Sbjct: 219 QKAFEHLGN----------TLTYDPTNYKAILAAGSMMQTHGDFDVALTKYKVVACAVIE 268

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI--------LNA 509
           +  L+NN+ +C F  ++Y   ++C +RA  LA  +    + YN+  V +         + 
Sbjct: 269 SPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPLD--WKILYNLGLVHLTMQQYASAFHF 326

Query: 510 LSTSVYNDQPEVALLFYRRLLQMGLYNAE 538
           LS ++ N QP++  L+   LL + L N E
Sbjct: 327 LSAAI-NFQPKMGELY--MLLAVALTNLE 352

May be required for the dynein-mediated transport of pericentriolar proteins to the centrosome. Required for microtubule anchoring at the centrosome but not for microtubule nucleation. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Bos taurus (taxid: 9913)

>sp|A1Z8E9|BBS4_DROME Bardet-Biedl syndrome 4 protein homolog OS=Drosophila melanogaster GN=BBS4 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 13/234 (5%)

Query: 342 EAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401
           EA+  F  A+     +E+++R+  +Y +  Q  +AI+I  N L   P    ++ E++ ++
Sbjct: 165 EARTYFELAVQSGRKLESYVRLAELYRKDKQYQKAIEILENCLHLTPENSEVLIEISVLY 224

Query: 402 EGLNNMPMSVKYYKLILKRDATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 460
             +N    +      ++  +  C  + +   G      +  + AL  Y ++       AE
Sbjct: 225 LKINETQKAHDRLAEVVSIERKCSPKGLLAFGAILQSRNDIDGALSKYSQIANAEPEIAE 284

Query: 461 LFNNLALCCFYSQQYDMVVTCFERALSLA-LNENAADVWYNISHVAILNALSTSVYNDQP 519
           L+NN+ LC F  Q++ + ++   +++ L+ LN NA    YN+S + I +    S ++   
Sbjct: 285 LWNNIGLCFFKKQKFIVAISSLRKSVWLSPLNYNA---LYNLSLIYIASEQYASAFHTLA 341

Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
                     + +   NAE +  L LC       +      ERA S+A  +  A
Sbjct: 342 AA--------INLRKDNAECYMLLGLCLRKLDDMENAFVALERASSMATGQQGA 387

May be required for microtubule anchoring at the centrosome. Required for ciliogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 49.7 bits (117), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 121/280 (43%), Gaps = 30/280 (10%)

Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL- 451
           ++T++    +   N    ++ Y   +K D+    A   +GV +    Q ++AL  Y +  
Sbjct: 159 VLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAA 218

Query: 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-LNAL 510
           L+  +Y AE + N+ +        +  + C+ER L+++ N   A      +++AI L  L
Sbjct: 219 LERPMY-AEAYCNMGVIFKNRGDLESAIACYERCLAVSPNFEIAK-----NNMAIALTDL 272

Query: 511 STSV-YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569
            T V         + +Y++ L    + A+   NL +      ++DM +  +E  L+   N
Sbjct: 273 GTKVKLEGDINQGVAYYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFN 330

Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629
            + A+   N+                    +  +   +   A++C  LALSI  +   S 
Sbjct: 331 PHCAEACNNLG-------------------VIYKDRDNLDKAVECYQLALSIKPNFSQSL 371

Query: 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           NNL V+   +G ++ A++ ++ A  ++P   E + N  V+
Sbjct: 372 NNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVL 411

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8C1Z7|BBS4_MOUSE Bardet-Biedl syndrome 4 protein homolog OS=Mus musculus GN=Bbs4 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 39/273 (14%)

Query: 288 KTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQF 347
           K VA+ LF    H      +A ++  E+ K  + +DW     LG CY  L    +AQ Q 
Sbjct: 105 KQVARSLFLLGKHK-----AATEVYNEAAKLNQ-KDWEICHNLGVCYTYLKQFNKAQDQL 158

Query: 348 NSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA--------- 398
           +SAL        +I + ++++      +AI+I + A++  P    ++T +          
Sbjct: 159 HSALQLNKHDLTYIMLGKIHLLQGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGVY 218

Query: 399 -RIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY 457
            + FE L N           L  D    +AI   G     +   +VAL  YR +      
Sbjct: 219 QKAFEHLGNA----------LTYDPANYKAILAAGSMMQTHGDFDVALTKYRVVACAIPE 268

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI--------LNA 509
           +  L+NN+ +C F  ++Y   ++C +RA  LA  +    + YN+  V +         + 
Sbjct: 269 SPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD--WKILYNLGLVHLTMQQYASAFHF 326

Query: 510 LSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN 542
           LS ++ N QP++  L+   LL + L N E   N
Sbjct: 327 LSAAI-NFQPKMGELY--MLLAVALTNLEDIEN 356

May be required for the dynein-mediated transport of pericentriolar proteins to the centrosome. Required for microtubule anchoring at the centrosome but not for microtubule nucleation. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Mus musculus (taxid: 10090)

>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 30/280 (10%)

Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL- 451
           ++T++    +   N    ++ Y   L+ D+    A   +GV +    Q ++AL  Y +  
Sbjct: 145 VLTDLGTSLKLAGNTEEGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDLALTCYEKAA 204

Query: 452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-LNAL 510
           L+  LY AE + N+ +      + +  + C+ER L+++ N   A      +++AI L  L
Sbjct: 205 LERPLY-AEAYCNMGVIYKNRGELEAAIACYERCLTISPNFEIAK-----NNMAIALTDL 258

Query: 511 STSV-YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569
            T V         + +Y++ L    + A+   NL +       ++M +  +E  L+L  N
Sbjct: 259 GTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYE--LALHFN 316

Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629
              A+   N+                    +  +   +   A++C  +ALSI  +   S 
Sbjct: 317 PRCAEACNNLG-------------------VIYKDRDNLDKAVECYQMALSIKPNFSQSL 357

Query: 630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           NNL V+   +G ++ AS+ +Q A  ++    E + N  V+
Sbjct: 358 NNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVL 397

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	677
328699792	503	PREDICTED: tetratricopeptide repeat prot	0.574	0.773	0.625	1e-149
156546020	498	PREDICTED: tetratricopeptide repeat prot	0.571	0.777	0.593	1e-147
350417804	496	PREDICTED: tetratricopeptide repeat prot	0.543	0.741	0.612	1e-145
340729289	764	PREDICTED: tetratricopeptide repeat prot	0.543	0.481	0.612	1e-145
307197616	496	Tetratricopeptide repeat protein 8 [Harp	0.571	0.780	0.609	1e-145
332030272	496	Tetratricopeptide repeat protein 8 [Acro	0.571	0.780	0.609	1e-145
156546022	508	PREDICTED: tetratricopeptide repeat prot	0.571	0.761	0.578	1e-144
380017154	496	PREDICTED: tetratricopeptide repeat prot	0.543	0.741	0.594	1e-143
383855556	496	PREDICTED: tetratricopeptide repeat prot	0.571	0.780	0.607	1e-143
443692485	499	hypothetical protein CAPTEDRAFT_163723 [	0.654	0.887	0.512	1e-143

>gi|328699792|ref|XP_001944378.2| PREDICTED: tetratricopeptide repeat protein 8-like [Acyrthosiphon pisum]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 245/392 (62%), Positives = 312/392 (79%), Gaps = 3/392 (0%)

Query: 115 ATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEE 174
           A++D+ + A     K N++KC   CT +L+KNPYD+AAW LKMR+LT QLS+DD+EAEEE
Sbjct: 8   ASLDTFYSACMDLRKHNYDKCIESCTIILSKNPYDQAAWALKMRALTEQLSIDDIEAEEE 67

Query: 175 GIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTL 234
           GIADS  +++ IA  AR GTSL+TA  T+     RPRT  GRP+SG+VRP T ++ G  L
Sbjct: 68  GIADSYFNSDAIAENARVGTSLRTAQDTS---NQRPRTVGGRPLSGIVRPSTSSAGGNNL 124

Query: 235 EQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYL 294
           + +LKTPRT  S+RPLTSQ+AR IRLGTASM+SQ DGPFI +SRLN  KYA DK ++K L
Sbjct: 125 QMALKTPRTVGSSRPLTSQSARNIRLGTASMVSQIDGPFINISRLNFPKYASDKQLSKLL 184

Query: 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF 354
           F Y+Y+ +ND+ +A+D AVE+TK C F D WWKVQLGKCY  LGL+R+ + QF SAL   
Sbjct: 185 FNYIYYQQNDIRNALDFAVEATKCCNFEDPWWKVQLGKCYVMLGLLRDGEAQFRSALQHG 244

Query: 355 TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY 414
            +IE F+R+ R++IRLDQP+ ++DI + A+  +P+E+T++ EMARIFEGLNN+PMSVKYY
Sbjct: 245 PNIEVFLRLSRLFIRLDQPLSSLDICQKAMSWFPHEITLLIEMARIFEGLNNIPMSVKYY 304

Query: 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474
           + IL+ DAT ME+IACIG++HFY+DQPEVAL +YRRLLQMGLYNAELFNNL LC FY+QQ
Sbjct: 305 RDILELDATDMESIACIGLHHFYSDQPEVALRYYRRLLQMGLYNAELFNNLGLCSFYAQQ 364

Query: 475 YDMVVTCFERALSLALNENAADVWYNISHVAI 506
           +D+V  CFE AL LAL++NAADVWYNISHVAI
Sbjct: 365 FDVVTACFENALRLALDDNAADVWYNISHVAI 396

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546020|ref|XP_001608003.1| PREDICTED: tetratricopeptide repeat protein 8-like isoform 1 [Nasonia vitripennis]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 231/389 (59%), Positives = 316/389 (81%), Gaps = 2/389 (0%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
           ++ A+  F +R FE+CA+ CTELL K+P D+A W LKMR+LT Q+ VDD+EAEE+GIA+S
Sbjct: 3   LYLALSLFRRRKFEECASACTELLRKSPLDQAVWVLKMRALTLQVYVDDIEAEEDGIAES 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGT--LEQS 237
           +LD +TIA+  RPGTSL+           RPRT+SGRPV+GVVRP T ++   +  +EQ+
Sbjct: 63  LLDNDTIASMPRPGTSLRNPGTALAGQGFRPRTQSGRPVTGVVRPATQSAMDSSQGMEQT 122

Query: 238 LKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEY 297
           L+TPRTA +ARP+T+   R++RLGTASML++P GPFIQ+SRLN++KYA   ++AK LFEY
Sbjct: 123 LRTPRTASTARPITASTGRSVRLGTASMLTEPGGPFIQLSRLNISKYASQPSIAKALFEY 182

Query: 298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDI 357
           +Y+HE+D   A+DLAV++T+AC+++DWWWKVQLGKCY++LGL+R+A+QQF SAL +   I
Sbjct: 183 IYYHEHDPRYALDLAVQATQACQYKDWWWKVQLGKCYYTLGLVRDAEQQFRSALRECKTI 242

Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI 417
           E  +R++RV ++LDQP+ A+++ +  L+ +PN+V+++TEMARIFEG++N+ MSVKYYK +
Sbjct: 243 ETVLRLVRVCVKLDQPLAALELCKKGLEYFPNDVSVLTEMARIFEGMDNVAMSVKYYKAV 302

Query: 418 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 477
              DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG++NAELFNNL LCCFY+QQYD 
Sbjct: 303 AHEDASHTEAIASIGLHHFYNDQPEIALRYYRRLLQMGVHNAELFNNLGLCCFYAQQYDF 362

Query: 478 VVTCFERALSLALNENAADVWYNISHVAI 506
            ++CFERALSLA  E+ ADVWYNISH+AI
Sbjct: 363 TISCFERALSLATEESIADVWYNISHIAI 391

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417804|ref|XP_003491603.1| PREDICTED: tetratricopeptide repeat protein 8-like [Bombus impatiens]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 237/387 (61%), Positives = 317/387 (81%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
           +F A++ F++  +E CA ICT LL KNP D+  W LKMR+LT Q+ VDD+E EEEGIA+S
Sbjct: 3   LFKALNLFNQGKYEDCATICTNLLQKNPLDQTIWVLKMRALTLQVYVDDIEGEEEGIAES 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239
           +LD  TI++  RPGTSLKT   ++     RP+T+SGRP++GVVRP T ++   ++EQ+L+
Sbjct: 63  LLDNYTISSMPRPGTSLKTPGTSSVGQCLRPKTQSGRPLTGVVRPATQSAMSQSIEQTLR 122

Query: 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLY 299
           TPRTA +ARP+T+ ++R++RLGTASML++P GPFIQ+SRLN++KYA   ++AK LFEY+Y
Sbjct: 123 TPRTAMTARPITAISSRSVRLGTASMLTEPGGPFIQLSRLNISKYASQPSIAKPLFEYIY 182

Query: 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEA 359
           +HE+DV  A+DLAV++T+ C ++DWWWKVQLGKCY+SLGLIR+A+QQF SAL     IE 
Sbjct: 183 YHEHDVRYALDLAVQATQICHYKDWWWKVQLGKCYYSLGLIRDAEQQFKSALKDSKTIEV 242

Query: 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
            +R+IRVY+RLDQP+ A+D  +  L+ +PN+V I+TEM RIF+GLNNM MS+KYYKLI +
Sbjct: 243 ILRLIRVYVRLDQPLTALDTCKKGLEYFPNDVNILTEMGRIFDGLNNMSMSLKYYKLIAQ 302

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479
            DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG+YNAELFNNL LCCFY+QQYD V+
Sbjct: 303 EDASHTEAIASIGIHHFYNDQPELALRYYRRLLQMGVYNAELFNNLGLCCFYAQQYDHVI 362

Query: 480 TCFERALSLALNENAADVWYNISHVAI 506
           +CFERA+SL+ +EN AD+WYNISH+A+
Sbjct: 363 SCFERAISLSTDENMADIWYNISHIAL 389

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729289|ref|XP_003402937.1| PREDICTED: tetratricopeptide repeat protein 8-like [Bombus terrestris]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 237/387 (61%), Positives = 316/387 (81%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
           +F A++ F +  +E CA ICT LL KNP D+  W LKMR+LT Q+ VDD+E EEEGIA+S
Sbjct: 3   LFKALNLFSQGKYEDCATICTNLLQKNPLDQTIWVLKMRALTLQVYVDDIEGEEEGIAES 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239
           +LD  TI++  RPGTSLKT   ++     RP+T+SGRP++GVVRP T ++   ++EQ+L+
Sbjct: 63  LLDNYTISSMPRPGTSLKTPGTSSVGQCLRPKTQSGRPLTGVVRPATQSAMSQSIEQTLR 122

Query: 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLY 299
           TPRTA +ARP+T+ ++R++RLGTASML++P GPFIQ+SRLN++KYA   ++AK LFEY+Y
Sbjct: 123 TPRTAMTARPITAISSRSVRLGTASMLTEPGGPFIQLSRLNISKYASQPSIAKPLFEYIY 182

Query: 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEA 359
           +HE+DV  A+DLAV++T+ C ++DWWWKVQLGKCY+SLGLIR+A+QQF SAL     IE 
Sbjct: 183 YHEHDVRYALDLAVQATQICHYKDWWWKVQLGKCYYSLGLIRDAEQQFKSALKDSKTIEV 242

Query: 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
            +R+IRVY+RLDQP+ A+D  +  L+ +PN+V I+TEM RIF+GLNNM MS+KYYKLI +
Sbjct: 243 ILRLIRVYVRLDQPLTALDTCKKGLEYFPNDVNILTEMGRIFDGLNNMSMSLKYYKLIAQ 302

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479
            DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG+YNAELFNNL LCCFY+QQYD V+
Sbjct: 303 EDASHTEAIASIGIHHFYNDQPELALRYYRRLLQMGVYNAELFNNLGLCCFYAQQYDHVI 362

Query: 480 TCFERALSLALNENAADVWYNISHVAI 506
           +CFERA+SL+ +EN AD+WYNISH+A+
Sbjct: 363 SCFERAISLSTDENMADIWYNISHIAL 389

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197616|gb|EFN78804.1| Tetratricopeptide repeat protein 8 [Harpegnathos saltator]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 236/387 (60%), Positives = 313/387 (80%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
           +F A+  F ++ +E C AICT+LL KNP D+A W LKMR+LT Q+ VDD+E EEEGIA++
Sbjct: 3   LFTALSLFSRQKYEACTAICTDLLRKNPLDQAVWVLKMRALTLQVYVDDIEGEEEGIAET 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239
           +LD   I++  RPGTSLK    +      RP+++SGRPV+GVVRP T A+   ++EQ+L+
Sbjct: 63  LLDNYAISSMPRPGTSLKNPGTSYTGQGVRPKSQSGRPVTGVVRPATQAAMSQSIEQALR 122

Query: 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLY 299
           TPRTA +ARP+T+ + R++RLGTASML++P GPFIQ+SRLN+ KYA  +++AK LFEY+Y
Sbjct: 123 TPRTAMTARPITASSGRSVRLGTASMLTEPGGPFIQLSRLNVTKYASQQSIAKPLFEYIY 182

Query: 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEA 359
           +HEND   A+DLAV++T+ C+++DWWWKVQLGKCY++LGL+R+A+QQF SAL     +E 
Sbjct: 183 YHENDARYALDLAVQATQICQYKDWWWKVQLGKCYYTLGLVRDAEQQFKSALKDHRAVET 242

Query: 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
            +R+IRVY+RLDQP+ A+D  +  LD + N+VTI+TEM RIFEGLNNM MS+KYYK+I +
Sbjct: 243 VLRLIRVYVRLDQPLAALDTCKRGLDYFTNDVTILTEMGRIFEGLNNMSMSMKYYKIIAQ 302

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479
            DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG++NAELFNNL LCCFY+QQYD  +
Sbjct: 303 EDASHTEAIASIGMHHFYNDQPELALRYYRRLLQMGVHNAELFNNLGLCCFYAQQYDHTI 362

Query: 480 TCFERALSLALNENAADVWYNISHVAI 506
           +CFERALSLA +EN ADVWYNISH+AI
Sbjct: 363 SCFERALSLATDENVADVWYNISHIAI 389

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030272|gb|EGI70046.1| Tetratricopeptide repeat protein 8 [Acromyrmex echinatior]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 236/387 (60%), Positives = 314/387 (81%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
           +F A+  F ++ +E CAAICT+LL KNP D+A W LKMR+LT Q+ VDD+E EEEGIA++
Sbjct: 3   LFTALSLFSRQKYEACAAICTDLLRKNPLDQAVWVLKMRALTLQVYVDDIEGEEEGIAET 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239
           +LD   I+T  RPGTSL+    +      RP+T+SGRPV+GV+RP T A+   ++EQ+L+
Sbjct: 63  LLDNYAISTMPRPGTSLRNPGTSYTGQGVRPKTQSGRPVTGVIRPATQAAMSQSIEQALR 122

Query: 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLY 299
           TPRTA +ARP+T+ + R++RLGTASML++P GPFIQ+SRLN+ KYA  +++AK LFEY+Y
Sbjct: 123 TPRTAMTARPITASSGRSVRLGTASMLTEPGGPFIQLSRLNITKYANQQSIAKPLFEYIY 182

Query: 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEA 359
           +HE+D   A+DLAV++T+ C+++DWWWKVQLGKCY++LGLIR+A+QQF SAL    +IE 
Sbjct: 183 YHEHDARYALDLAVQATQVCQYKDWWWKVQLGKCYYTLGLIRDAEQQFKSALKDHKNIET 242

Query: 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
            +R+IRVYIRLDQP+ A+D  +  L+ + N+VTI+TEM RIFEGLNN  MS+KYYK+I +
Sbjct: 243 VLRLIRVYIRLDQPVAALDTCKRGLEHFANDVTILTEMGRIFEGLNNATMSMKYYKVIAQ 302

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479
            DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG++NAELFNNL LCCFY+QQYD  +
Sbjct: 303 EDASHTEAIASIGMHHFYNDQPELALRYYRRLLQMGVHNAELFNNLGLCCFYAQQYDHTI 362

Query: 480 TCFERALSLALNENAADVWYNISHVAI 506
           +CFERAL+LA +EN ADVWYNISH+AI
Sbjct: 363 SCFERALNLATDENVADVWYNISHIAI 389

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546022|ref|XP_001608007.1| PREDICTED: tetratricopeptide repeat protein 8-like isoform 2 [Nasonia vitripennis]

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 231/399 (57%), Positives = 316/399 (79%), Gaps = 12/399 (3%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDK----------AAWTLKMRSLTSQLSVDDL 169
           ++ A+  F +R FE+CA+ CTELL K+P D+          A W LKMR+LT Q+ VDD+
Sbjct: 3   LYLALSLFRRRKFEECASACTELLRKSPLDQVRYKNLRLSQAVWVLKMRALTLQVYVDDI 62

Query: 170 EAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLAS 229
           EAEE+GIA+S+LD +TIA+  RPGTSL+           RPRT+SGRPV+GVVRP T ++
Sbjct: 63  EAEEDGIAESLLDNDTIASMPRPGTSLRNPGTALAGQGFRPRTQSGRPVTGVVRPATQSA 122

Query: 230 RGGT--LEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARD 287
              +  +EQ+L+TPRTA +ARP+T+   R++RLGTASML++P GPFIQ+SRLN++KYA  
Sbjct: 123 MDSSQGMEQTLRTPRTASTARPITASTGRSVRLGTASMLTEPGGPFIQLSRLNISKYASQ 182

Query: 288 KTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQF 347
            ++AK LFEY+Y+HE+D   A+DLAV++T+AC+++DWWWKVQLGKCY++LGL+R+A+QQF
Sbjct: 183 PSIAKALFEYIYYHEHDPRYALDLAVQATQACQYKDWWWKVQLGKCYYTLGLVRDAEQQF 242

Query: 348 NSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM 407
            SAL +   IE  +R++RV ++LDQP+ A+++ +  L+ +PN+V+++TEMARIFEG++N+
Sbjct: 243 RSALRECKTIETVLRLVRVCVKLDQPLAALELCKKGLEYFPNDVSVLTEMARIFEGMDNV 302

Query: 408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 467
            MSVKYYK +   DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG++NAELFNNL L
Sbjct: 303 AMSVKYYKAVAHEDASHTEAIASIGLHHFYNDQPEIALRYYRRLLQMGVHNAELFNNLGL 362

Query: 468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
           CCFY+QQYD  ++CFERALSLA  E+ ADVWYNISH+AI
Sbjct: 363 CCFYAQQYDFTISCFERALSLATEESIADVWYNISHIAI 401

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017154|ref|XP_003692527.1| PREDICTED: tetratricopeptide repeat protein 8-like [Apis florea]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 230/387 (59%), Positives = 314/387 (81%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
           +F A+  F++  +E+C  ICT+LL KNP D+ AW LKMR+LT Q+ VDD+E EEEGIA+S
Sbjct: 3   LFKALSLFNRGKYEECTTICTDLLRKNPLDQTAWILKMRALTLQVYVDDIEGEEEGIAES 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239
           +LD  TI++  RPGTSLK    +      RP+T+SGRP++G++RP T ++   ++EQ+L+
Sbjct: 63  LLDNYTISSMPRPGTSLKNPGTSFTGQYLRPKTQSGRPLTGIIRPATQSAISQSIEQTLR 122

Query: 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLY 299
           TPR A +ARP+T+ ++R +RLGTASML++P GPFIQ+SRLN++KYA   ++AK LFEY+Y
Sbjct: 123 TPRVAMTARPITASSSRNVRLGTASMLTEPGGPFIQLSRLNISKYANQPSIAKSLFEYIY 182

Query: 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEA 359
           +HE+D+  A+DLAV++TKAC+++DWWWKVQLGKCY+SLG++R+A+QQF SAL  F  IE 
Sbjct: 183 YHEHDIRYALDLAVQATKACQYKDWWWKVQLGKCYYSLGMVRDAEQQFKSALRDFKTIEV 242

Query: 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
            +R+IRVYI+LDQP+ A+D  +  L+ + N+V I+TEM RIF+GLNNM MS+KYYK+I +
Sbjct: 243 ILRLIRVYIKLDQPLAALDTCKKGLEYFNNDVNILTEMGRIFDGLNNMSMSLKYYKIIAQ 302

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479
            DA+  EAIA IG+ HFYNDQPE+AL +YRRLLQMG+YN ELFNNL LCCFY+QQYD V+
Sbjct: 303 EDASHTEAIASIGIYHFYNDQPELALRYYRRLLQMGVYNTELFNNLGLCCFYAQQYDHVI 362

Query: 480 TCFERALSLALNENAADVWYNISHVAI 506
           +CFERA++L+ +EN AD+WYNISH+AI
Sbjct: 363 SCFERAITLSTDENIADIWYNISHIAI 389

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855556|ref|XP_003703276.1| PREDICTED: tetratricopeptide repeat protein 8-like [Megachile rotundata]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 316/387 (81%)

Query: 120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADS 179
            F A+  F++  +E+CA ICT LL K+P D+A W LKMR+LT Q+ VDD+E EEEGIA++
Sbjct: 3   FFKALSLFNRGKYEECATICTNLLRKSPLDQAIWVLKMRALTLQVYVDDIEGEEEGIAET 62

Query: 180 VLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK 239
           +LD  TI++  RPGTSLK  A +      RP+T+SGRPV+GV+RP T A+   +LEQ+L+
Sbjct: 63  LLDNYTISSMPRPGTSLKQPATSYAGQYLRPKTQSGRPVTGVIRPATQAATSHSLEQTLR 122

Query: 240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLY 299
           TPRTA +ARP+T+ ++R +RLGTASML++P GPFIQ+SRLN++KYA   ++AK LFEY+Y
Sbjct: 123 TPRTAMTARPITASSSRNVRLGTASMLTEPGGPFIQLSRLNISKYASQPSIAKPLFEYIY 182

Query: 300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEA 359
           +HE+DV  A+DLAV++T+ C+++DWWWKVQLGKCY+SLGL+R+A+QQF SAL     IE 
Sbjct: 183 YHEHDVRYALDLAVQATQVCQYKDWWWKVQLGKCYYSLGLVRDAEQQFKSALKDCKTIET 242

Query: 360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK 419
            +R++RVYI+LDQP+ A++  +  L+ +PN+V I+TEM RIF+GLNNM MS+KYYK+I++
Sbjct: 243 TLRLVRVYIKLDQPLAALETCKKGLEYFPNDVNILTEMGRIFDGLNNMSMSLKYYKIIVQ 302

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV 479
            DA+  EAIA IG++HFY+DQPE+AL +YRRLLQMG+YN ELFNNL LCCFY+QQYD VV
Sbjct: 303 EDASHTEAIASIGMHHFYSDQPELALRYYRRLLQMGVYNTELFNNLGLCCFYAQQYDHVV 362

Query: 480 TCFERALSLALNENAADVWYNISHVAI 506
           +CFERALSL+ +EN ADVWYNISH+A+
Sbjct: 363 SCFERALSLSTDENIADVWYNISHIAL 389

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443692485|gb|ELT94078.1| hypothetical protein CAPTEDRAFT_163723 [Capitella teleta]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 232/453 (51%), Positives = 332/453 (73%), Gaps = 10/453 (2%)

Query: 117 VDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGI 176
           +D +F A  +F +R +E+C  +C++LL KNPYD+AAW+LK R+LT Q+ +D+++ +EEGI
Sbjct: 1   MDPLFLAYSYFRRRKYEQCVELCSQLLDKNPYDQAAWSLKTRALTEQVYIDEVDVDEEGI 60

Query: 177 ADSVLDTNTIATAARPGTSLKTAAVT--APALTSRPRTESGRPVSGVVRPGTLASRGGTL 234
           A+ ++D N+IA  ARPGTSLK       AP+   RP ++SGRP++G VRPGT ++R GT+
Sbjct: 61  AELIMDDNSIAQVARPGTSLKVPGTGQGAPSQGVRPMSQSGRPLTGFVRPGTQSTRPGTM 120

Query: 235 EQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYL 294
           EQ+++TPRTA +ARP+TS + R +RLGTASMLS PDGPFI ++RLN+ KY+    +AK L
Sbjct: 121 EQAIRTPRTAHTARPVTSASGRYVRLGTASMLSSPDGPFINLARLNMPKYSARPNLAKSL 180

Query: 295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF 354
           FEY++HHENDV +A+DLA  +T+AC+F+DWWWKVQLGKCY+ LG+ R+A++QF SAL Q 
Sbjct: 181 FEYIFHHENDVRNALDLASGATEACQFQDWWWKVQLGKCYYRLGMYRDAEKQFKSALKQQ 240

Query: 355 TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY 414
             ++ ++ + +VY+RLDQP+ A+++ +  L  +  E +++T +AR++EG+N+M  +V++Y
Sbjct: 241 DMVDTYLYLCKVYVRLDQPLTAVEVYKQGLQRFIGEASLLTGIARVYEGMNDMSNTVQFY 300

Query: 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474
           K +L +D   +EAIACIG ++FY DQPE+AL FYRRLLQMG+YN ELFNNL LCCFY+QQ
Sbjct: 301 KDVLHQDNMSIEAIACIGTHYFYTDQPEIALKFYRRLLQMGVYNTELFNNLGLCCFYAQQ 360

Query: 475 YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534
           YDM +TCFERALSLA ++N +DVWYNI HVA+     T  Y          +R  L    
Sbjct: 361 YDMTLTCFERALSLASDDNMSDVWYNIGHVALGIGDLTLAYQS--------FRLALASNN 412

Query: 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
            +AE +NNL +      + +M    F+ A +LA
Sbjct: 413 DHAEAYNNLGVLEMKKGRLEMSRAFFQAAFNLA 445

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	677
UNIPROTKB|E1C4G5	515	TTC8 "Uncharacterized protein"	0.618	0.813	0.512	4.2e-132
UNIPROTKB|F1N4X0	506	TTC8 "Uncharacterized protein"	0.661	0.885	0.521	1.1e-126
UNIPROTKB|F1SDY6	506	TTC8 "Uncharacterized protein"	0.654	0.875	0.519	2.9e-126
ZFIN|ZDB-GENE-030131-8846	507	ttc8 "tetratricopeptide repeat	0.658	0.879	0.508	1.7e-123
RGD|1307769	515	Ttc8 "tetratricopeptide repeat	0.654	0.860	0.503	3.1e-122
MGI|MGI:1923510	515	Ttc8 "tetratricopeptide repeat	0.654	0.860	0.498	2.2e-121
UNIPROTKB|Q8TAM2	541	TTC8 "Tetratricopeptide repeat	0.516	0.646	0.426	3e-89
UNIPROTKB|E2REN6	540	TTC8 "Uncharacterized protein"	0.571	0.716	0.390	1.7e-86
WB|WBGene00000244	506	bbs-8 [Caenorhabditis elegans	0.559	0.749	0.431	1.1e-95
UNIPROTKB|Q23049	506	bbs-8 "Protein BBS-8" [Caenorh	0.559	0.749	0.431	1.1e-95

UNIPROTKB|E1C4G5 TTC8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1155 (411.6 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
 Identities = 227/443 (51%), Positives = 317/443 (71%)

Query:   118 DSMFYAVDHFHKRNFEKCAAICTELLAKNP--------YD--KAAWTLKMRSLTSQLSVD 167
             + +F A  +F +R F +C+ +C++LL   P        Y   +AAW+LK R+LT  + VD
Sbjct:     6 EPLFQAWSYFRRRKFRQCSELCSQLLEGAPGEQENDTGYSAFQAAWSLKTRALTEMVYVD 65

Query:   168 DLEAEEEGIADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSGVVRP 224
             ++E ++EGIA+ +LD N IA  ARPGTSLK   T+    P+   RP T+SGRP++G VRP
Sbjct:    66 EIEIDQEGIAEMMLDENAIAQVARPGTSLKLPGTSQGGGPSPAVRPITQSGRPITGFVRP 125

Query:   225 GTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKY 284
              T + R  T+EQ++KTPRTA +ARP++S + R +RLGTASM++ PDGPFI VSRLNL+KY
Sbjct:   126 STQSGRPSTMEQAIKTPRTALTARPISSASGRYVRLGTASMITNPDGPFINVSRLNLSKY 185

Query:   285 ARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQ 344
             A+   +AK LFEY++HHENDV +A+DLA  +T+  +F+DWWWKVQ+GKC++ LGL REA+
Sbjct:   186 AQKPELAKALFEYIFHHENDVKNALDLAALATEHAQFKDWWWKVQIGKCFYRLGLYREAE 245

Query:   345 QQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL 404
             +QF SAL Q   ++  + + +VY+RLDQP+ A+++ +  L+ +P EVT++  +ARI+E +
Sbjct:   246 KQFKSALKQQDMVDTILYLAKVYLRLDQPVTALNLFKQGLERFPGEVTLICGIARIYEEM 305

Query:   405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 464
             N++  + +YYK +LK+D T +EAIACIG N FY+DQPE+AL FYRRLLQMG+YN +LFNN
Sbjct:   306 NDISSAAEYYKEVLKQDNTHVEAIACIGSNRFYSDQPEIALRFYRRLLQMGVYNYQLFNN 365

Query:   465 LALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAI-LNALSTSVYNDQPEVA 522
             L LCCFY+QQYDM +T FERAL LA NE   ADVWYN+ HVA+ +  L+ + Y       
Sbjct:   366 LGLCCFYAQQYDMTLTSFERALFLAENEEERADVWYNLGHVAVGIGDLNLA-YQ------ 418

Query:   523 LLFYRRLLQMGLYNAELFNNLAL 545
               F   L+    Y AE +NNLA+
Sbjct:   419 -CFKLTLVNNNDY-AEAYNNLAV 439

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

UNIPROTKB|F1N4X0 TTC8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 240/460 (52%), Positives = 325/460 (70%)

Query:   112 APTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEA 171
             AP + ++ +  A  +F +R F+ CA +CT++L K+P D+AAW LK R+LT  + VD+++ 
Sbjct:     1 APASDMEPLLLAWSYFRRRRFQLCADLCTQMLEKSPCDQAAWILKARALTEMVYVDEIDV 60

Query:   172 EEEGIADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSGVVRPGTLA 228
             +EEGIA+ +LD N IA   RPGTSLK   T     P+   RP T++GRP++G +RP T +
Sbjct:    61 DEEGIAEMILDENAIAQVPRPGTSLKLPGTNQTGGPSPAVRPVTQAGRPITGFLRPSTQS 120

Query:   229 SRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDK 288
              R GT+EQ++KTPRTA +ARP+ S + R +RLGTASML+ PDGPFI +SRLNLAKYA+  
Sbjct:   121 GRPGTIEQAIKTPRTAYTARPIASSSGRFVRLGTASMLTSPDGPFINLSRLNLAKYAQKP 180

Query:   289 TVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFN 348
              +AK LFEY++HHENDV +A+DLA  ST+  +++DWWWKVQ+GKCY+ LGL REA++QF 
Sbjct:   181 KLAKALFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGLYREAEKQFK 240

Query:   349 SALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP 408
             SAL Q   ++ F+ + +VYI LDQP+ A+++ +  LD +P EVT++  +ARI+E +NN+ 
Sbjct:   241 SALKQQEMVDTFLYLAKVYISLDQPLTALNLFKQGLDKFPGEVTLLCGIARIYEEMNNIS 300

Query:   409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468
              + +YYK +LK+D T +EAIACIG NHFY DQPEVAL FYRRLLQMG+YN +LFNNL LC
Sbjct:   301 SATEYYKEVLKQDNTHVEAIACIGSNHFYTDQPEVALRFYRRLLQMGVYNCQLFNNLGLC 360

Query:   469 CFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALSTSVYNDQPEVALLFYR 527
             CFY+QQYDM +T FERALSLA NE   ADVWYN+ HVA+     T   N    +A   +R
Sbjct:   361 CFYAQQYDMTLTSFERALSLAENEEEVADVWYNLGHVAV----GTGDTN----LAHQCFR 412

Query:   528 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
               L     +AE +NNLA+        +      + A SLA
Sbjct:   413 LALVSNNQHAEAYNNLAVLEMRRGHVEQAKALLQTASSLA 452

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|F1SDY6 TTC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 237/456 (51%), Positives = 326/456 (71%)

Query:   117 VDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGI 176
             ++ +  A  +F +R F+ CA +CT++L K+PYD+AAW LK R+LT  + +D+++  +EGI
Sbjct:     5 MEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVHQEGI 64

Query:   177 ADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGT 233
             A+ VLD N IA   RPGTSLK   T     P+   RP T++GRP++G +RP T + R GT
Sbjct:    65 AEMVLDENAIAQVPRPGTSLKLPGTNQTGGPSPAVRPITQAGRPITGFLRPSTQSGRPGT 124

Query:   234 LEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKY 293
             +EQ+++TPRTA +ARP+TS + R +RLGTASML+ PDGPFI +SRLNLAKYA+   +AK 
Sbjct:   125 MEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLAKYAQKPKLAKA 184

Query:   294 LFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ 353
             LFEY++HHENDV +A+DLA  ST+  +++DWWWKVQ+GKCY+ LG+ REA++QF SAL Q
Sbjct:   185 LFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQ 244

Query:   354 FTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY 413
                ++ F+ + +VYI LDQP+ A+++ +  LD +P EVT++  +ARI+E +NN+P + +Y
Sbjct:   245 QEMVDTFLYLAKVYISLDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEEMNNIPSATEY 304

Query:   414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR-LLQMGLYNAELFNNLALCCFYS 472
             YK +LK+D T +EAIACIG NHFY+DQPEVAL FYRR LLQMG+YN +LFNNL LCCFY+
Sbjct:   305 YKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRRLLQMGVYNCQLFNNLGLCCFYA 364

Query:   473 QQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ 531
             QQYDM +T FERALSLA NE   ADVWYN+ HVA+   +  +       +A   +R  L 
Sbjct:   365 QQYDMTLTSFERALSLAENEEEVADVWYNLGHVAV--GIGDT------NLAHQCFRLALV 416

Query:   532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                ++AE +NNLA+        D      + A SLA
Sbjct:   417 NNNHHAEAYNNLAVLEMRKGHVDQARALLQTASSLA 452

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

ZFIN|ZDB-GENE-030131-8846 ttc8 "tetratricopeptide repeat domain 8" [Danio rerio (taxid:7955)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 233/458 (50%), Positives = 324/458 (70%)

Query:   114 TATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEE 173
             T ++D +F A     +R F++CA IC+ LLA++PYD+A W+LK R+LT  + +D++E E+
Sbjct:     4 TVSMDPLFLAWSSCRRRRFQRCADICSTLLAESPYDQAVWSLKTRALTEMVYIDEVEVEQ 63

Query:   174 EGIADSVLDTNTIATAARPGTSLKTAAVT---APALTSRPRTESGRPVSGVVRPGTLASR 230
             EGIAD +LD ++IA  ARPGTSL+  A +   AP    RP T+SGRP++G VRP TL+ R
Sbjct:    64 EGIADMMLDESSIAQVARPGTSLRRPATSQAGAPTPAVRPMTQSGRPITGFVRPSTLSGR 123

Query:   231 GGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTV 290
               T+EQ+++TPRTA +ARP++S + R +RLGTASML+ PDGPFI +SRLNLAKYA+   +
Sbjct:   124 PETMEQAIRTPRTASTARPVSSASGRFVRLGTASMLTHPDGPFINLSRLNLAKYAKRPNL 183

Query:   291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSA 350
              K LFEY++HHENDV +A+DLA  +T+  +F+DWWWKVQLGKCY+ LGL+REA++QF SA
Sbjct:   184 CKTLFEYIFHHENDVKTALDLAALATEHAQFKDWWWKVQLGKCYYRLGLLREAEKQFRSA 243

Query:   351 LNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS 410
             L Q   ++  + + +VY RLDQPI A+ + +  LD +P EVT++T +ARI E +NNM  +
Sbjct:   244 LAQQEFVDTHLYLAKVYQRLDQPITALTVFKQGLDHFPAEVTLLTGIARIHEEMNNMSSA 303

Query:   411 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470
              +YY+ +LK+D T +EAIACIG  HFY DQPE+AL FYRRLLQMG++N +L+NNL LCCF
Sbjct:   304 TEYYREVLKQDNTHVEAIACIGSTHFYTDQPEIALRFYRRLLQMGVFNCQLYNNLGLCCF 363

Query:   471 YSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529
             Y+QQYDM ++C ERAL+L   +E  ADVWYN+ HVA+     T  Y    +++L F    
Sbjct:   364 YAQQYDMSLSCLERALALVSGDEEQADVWYNLGHVAVGIGDLTLAYQCF-KLSLAFNNN- 421

Query:   530 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                   + E +NNLA+        +      + A SL+
Sbjct:   422 ------HGEAYNNLAVLELRKGHIEQAKAFLQTAASLS 453

GO:0046907 "intracellular transport" evidence=IMP

GO:0032402 "melanosome transport" evidence=IMP

GO:0051877 "pigment granule aggregation in cell center" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0060026 "convergent extension" evidence=IMP

RGD|1307769 Ttc8 "tetratricopeptide repeat domain 8" [Rattus norvegicus (taxid:10116)]

 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 234/465 (50%), Positives = 323/465 (69%)

Query:   117 VDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDK----------AAWTLKMRSLTSQLSV 166
             ++ +F A  +F +R F+ CA +CT++L K+PYD+          AAW LK R+LT  + V
Sbjct:     5 MEPLFRAWSYFRRRKFQLCADLCTQMLEKSPYDQDPAPDLAVSQAAWILKARALTEMVYV 64

Query:   167 DDLEAEEEGIADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSGVVR 223
             D+++ ++EGIA+  LD N IA   RPGTSLK   T     P    RP T++GRP++G +R
Sbjct:    65 DEIDVDQEGIAEMTLDENAIAQVPRPGTSLKLPGTNQTGGPTQAVRPITQAGRPITGFLR 124

Query:   224 PGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK 283
             P T + R GT+EQ+++TPRTA +ARP+TS + R +RLGTASML+ PDGPFI +SRLNL K
Sbjct:   125 PSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTK 184

Query:   284 YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREA 343
             Y++   +AK LFEY++HHENDV  A+DLA  ST+  +++DWWWKVQ+GKCY+ LG+ REA
Sbjct:   185 YSQKPKLAKALFEYIFHHENDVKMALDLASLSTEYSQYKDWWWKVQIGKCYYRLGMYREA 244

Query:   344 QQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403
             ++QF SAL Q   ++ F+ + +VYI LDQP+ A+++ +  LD +P EVT++  +ARI+E 
Sbjct:   245 EKQFKSALKQQEMVDTFLYLAKVYIILDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEE 304

Query:   404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN 463
             +NN   + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRRLLQMG+YN +LFN
Sbjct:   305 MNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGVYNCQLFN 364

Query:   464 NLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALSTSVYNDQPEVA 522
             NL LCCFY+QQYDM +T FERALSLA NE  AADVWYN+ H+A+   +  +       +A
Sbjct:   365 NLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAV--GIGDT------NLA 416

Query:   523 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                +R  L    ++AE +NNLA+        +      + A SLA
Sbjct:   417 HQCFRLALVHNNHHAEAYNNLAVLEMRKGHIEQARALLQTASSLA 461

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007608 "sensory perception of smell" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0034464 "BBSome" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042384 "cilium assembly" evidence=ISO

GO:0048560 "establishment of anatomical structure orientation" evidence=ISO

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=ISO

GO:0061326 "renal tubule development" evidence=ISO

MGI|MGI:1923510 Ttc8 "tetratricopeptide repeat domain 8" [Mus musculus (taxid:10090)]

 Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
 Identities = 232/465 (49%), Positives = 322/465 (69%)

Query:   117 VDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDK----------AAWTLKMRSLTSQLSV 166
             ++ +  A  +F +R F+ CA +CT++L K+PYD+          AAW LK R+LT  + +
Sbjct:     5 MEPLLRAWSYFRRRKFQLCADLCTQMLEKSPYDQEPAPDLPVSQAAWILKARALTEMVYI 64

Query:   167 DDLEAEEEGIADSVLDTNTIATAARPGTSLK---TAAVTAPALTSRPRTESGRPVSGVVR 223
             D+++ ++EGIA+ +LD N IA   RPGTSLK   T     P    RP T++GRP++G +R
Sbjct:    65 DEIDVDQEGIAEMILDENAIAQVPRPGTSLKLPGTNQTGGPTQAVRPITQAGRPITGFLR 124

Query:   224 PGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK 283
             P T + R GT+EQ+++TPRTA +ARP+TS + R +RLGTASML+ PDGPFI +SRLNL K
Sbjct:   125 PSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTK 184

Query:   284 YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREA 343
             Y++   +AK LFEY+ HHENDV  A+DLA  ST+  +++DWWWKVQ+GKCY+ LG+ REA
Sbjct:   185 YSQKPKLAKALFEYILHHENDVKMALDLASLSTEYSQYKDWWWKVQIGKCYYRLGMYREA 244

Query:   344 QQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG 403
             ++QF SAL Q   ++ F+ + +VYI LDQP+ A+++ +  LD +P EVT++  +ARI+E 
Sbjct:   245 EKQFKSALKQQEMVDTFLYLAKVYIILDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEE 304

Query:   404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN 463
             +NN   + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRRLLQMG+YN +LFN
Sbjct:   305 MNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGVYNCQLFN 364

Query:   464 NLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALSTSVYNDQPEVA 522
             NL LCCFY+QQYDM +T FERALSLA NE  AADVWYN+ H+A+   +  +       +A
Sbjct:   365 NLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAV--GIGDT------NLA 416

Query:   523 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                +R  L    ++AE +NNLA+        +      + A SLA
Sbjct:   417 HQCFRLALVHNNHHAEAYNNLAVLEMRKGHVEQARALLQTASSLA 461

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=ISO

GO:0007411 "axon guidance" evidence=IGI

GO:0007608 "sensory perception of smell" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0021772 "olfactory bulb development" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0034464 "BBSome" evidence=ISO;IDA

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0048560 "establishment of anatomical structure orientation" evidence=ISO

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=IMP

GO:0061326 "renal tubule development" evidence=IMP

UNIPROTKB|Q8TAM2 TTC8 "Tetratricopeptide repeat protein 8" [Homo sapiens (taxid:9606)]

 Score = 709 (254.6 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 159/373 (42%), Positives = 227/373 (60%)

Query:   209 RPRTESGRP--VSGVVR-PGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASM 265
             RP T+SGRP  +   +R P T  +       S +  R   +A  LTS     I L   ++
Sbjct:   124 RPSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLG-TASMLTSPDGPFINLSRLNL 182

Query:   266 LSQPDGPFIQVSRLN-LAKYARD-KT-----VAKYL--FEYLYHHENDVA-SAMDLAVES 315
                   P +  +    +  +  D KT     V  +L  + +L  ++N +  +A+DLA  S
Sbjct:   183 TKYSQKPKLAKALFEYIFHHENDVKTIHLEDVVLHLGIYPFLLRNKNHIEKNALDLAALS 242

Query:   316 TKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIR 375
             T+  +++DWWWKVQ+GKCY+ LG+ REA++QF SAL Q   ++ F+ + +VY+ LDQP+ 
Sbjct:   243 TEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVT 302

Query:   376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435
             A+++ +  LD +P EVT++  +ARI+E +NNM  + +YYK +LK+D T +EAIACIG NH
Sbjct:   303 ALNLFKQGLDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNH 362

Query:   436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-A 494
             FY+DQPE+AL FYRRLLQMG+YN +LFNNL LCCFY+QQYDM +T FERALSLA NE  A
Sbjct:   363 FYSDQPEIALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEA 422

Query:   495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 554
             ADVWYN+ HVA+   +  +       +A   +R  L     +AE +NNLA+        +
Sbjct:   423 ADVWYNLGHVAV--GIGDT------NLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVE 474

Query:   555 MVVTCFERALSLA 567
                   + A SLA
Sbjct:   475 QARALLQTASSLA 487

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0060170 "cilium membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0034464 "BBSome" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0042384 "cilium assembly" evidence=TAS

GO:0005929 "cilium" evidence=IDA

GO:0048560 "establishment of anatomical structure orientation" evidence=IMP

GO:0050893 "sensory processing" evidence=TAS

UNIPROTKB|E2REN6 TTC8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 693 (249.0 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
 Identities = 161/412 (39%), Positives = 233/412 (56%)

Query:   171 AEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTS--RPRTESGRP--VSGVVR-PG 225
             A+  G   S+    T  T   P  +++        +T   RP T+SGRP  +   +R P 
Sbjct:    85 AQTSGPGTSLKLPGTNQTGG-PSPAIRPITQAGRPITGFLRPGTQSGRPGTMEQAIRTPR 143

Query:   226 TLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYA 285
             T  +       S +  R   +A  LTS     I L   ++      P +  +      + 
Sbjct:   144 TAYTARPITSSSGRFVRLG-TASMLTSPDGPFINLSRLNLTKYAQKPKLAKALFEYIFHH 202

Query:   286 RDKTVAKYLFEYLYH--------HENDVA-SAMDLAVESTKACEFRDWWWKVQLGKCYFS 336
              +     +L + + H        + N +  +A+DLA  ST+  +++DWWWKVQ+GKCY+ 
Sbjct:   203 ENDVKTIHLEDVILHLALTMTLTNRNHIEKNALDLAALSTEHSQYKDWWWKVQIGKCYYR 262

Query:   337 LGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTE 396
             LG+ REA++QF SAL Q   ++ F+ + +VYI LDQP+ A+ + +  LD +P EVT++  
Sbjct:   263 LGMYREAEKQFKSALKQQEMVDTFLYLAKVYISLDQPVTALTLFKQGLDKFPGEVTLLCG 322

Query:   397 MARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456
             +ARI+E +NN+  + +YYK +LK+D T +EAIACIG NHFY+DQPE+AL FYRRLLQMG+
Sbjct:   323 IARIYEEMNNISSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGV 382

Query:   457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALSTSVY 515
             YN +LFNNL LCCFY+QQYDM +T FERAL+LA NE  AADVWYN+ H+A+         
Sbjct:   383 YNCQLFNNLGLCCFYAQQYDMTLTSFERALALAENEEEAADVWYNLGHIAV-------GI 435

Query:   516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
              D   +A   +R  L     +AE +NNLA+        +      + A SLA
Sbjct:   436 GDM-NLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHIEQARALLQTASSLA 486

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

WB|WBGene00000244 bbs-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 856 (306.4 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 165/382 (43%), Positives = 249/382 (65%)

Query:   127 FHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTI 186
             F +    +  A+CT LL KNP D+A W LKM+ L+    VD+LE E+ G+A++ LD N I
Sbjct:    19 FRENRLAEAEAVCTNLLRKNPLDQATWALKMQCLSDSTYVDELENEDMGLAETFLDQNVI 78

Query:   187 ATAARPGTSLKTAAVTAPALTS--RPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTA 244
             A  ARPGTS      +A  +    RP T +GRP+SGVVRP + + + G+++Q+++T RTA
Sbjct:    79 APNARPGTSFARPKTSAKGVNPILRPTTNAGRPLSGVVRPQS-SFKSGSMDQAVRTARTA 137

Query:   245 KSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHEND 304
             K+AR ++S +AR +RLGTASM +  DG F+ ++RLN+ KYA D  V + LFEY++++ ND
Sbjct:   138 KTARAVSSTSARNMRLGTASMAAGADGEFVNLARLNIDKYAADPQVNRQLFEYVFYYLND 197

Query:   305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI 364
             +  A  +A  ++KA  F D++WK QL KCY  LG++++A +Q  S+L Q   IE F  + 
Sbjct:   198 IRVAHQIAGTASKAAGFEDYYWKNQLAKCYLRLGMLQDATKQLQSSLEQKKLIETFALLS 257

Query:   365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC 424
             + Y R+DQP+ A+      L+ +P  VT++T MAR+ E L     SVK YK +L  ++  
Sbjct:   258 KAYNRVDQPMAALKTYSAGLEVFPENVTMLTGMARVQEALGEYDESVKLYKRVLDAESNN 317

Query:   425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 484
             +EAIAC+   ++Y  +PE+A+ +YRR+LQMG+ + ELF N+ LCC  +QQ+D  ++   R
Sbjct:   318 IEAIACVATTYYYGGKPELAMRYYRRILQMGVSSPELFLNIGLCCMAAQQFDFALSSILR 377

Query:   485 ALSLALNENAADVWYNISHVAI 506
             A S   ++ AADVWYNI  + +
Sbjct:   378 AQSTMTDDVAADVWYNIGQILV 399

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006935 "chemotaxis" evidence=IMP

GO:0042073 "intraflagellar transport" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

UNIPROTKB|Q23049 bbs-8 "Protein BBS-8" [Caenorhabditis elegans (taxid:6239)]

 Score = 856 (306.4 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 165/382 (43%), Positives = 249/382 (65%)

Query:   127 FHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTI 186
             F +    +  A+CT LL KNP D+A W LKM+ L+    VD+LE E+ G+A++ LD N I
Sbjct:    19 FRENRLAEAEAVCTNLLRKNPLDQATWALKMQCLSDSTYVDELENEDMGLAETFLDQNVI 78

Query:   187 ATAARPGTSLKTAAVTAPALTS--RPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTA 244
             A  ARPGTS      +A  +    RP T +GRP+SGVVRP + + + G+++Q+++T RTA
Sbjct:    79 APNARPGTSFARPKTSAKGVNPILRPTTNAGRPLSGVVRPQS-SFKSGSMDQAVRTARTA 137

Query:   245 KSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHEND 304
             K+AR ++S +AR +RLGTASM +  DG F+ ++RLN+ KYA D  V + LFEY++++ ND
Sbjct:   138 KTARAVSSTSARNMRLGTASMAAGADGEFVNLARLNIDKYAADPQVNRQLFEYVFYYLND 197

Query:   305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI 364
             +  A  +A  ++KA  F D++WK QL KCY  LG++++A +Q  S+L Q   IE F  + 
Sbjct:   198 IRVAHQIAGTASKAAGFEDYYWKNQLAKCYLRLGMLQDATKQLQSSLEQKKLIETFALLS 257

Query:   365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC 424
             + Y R+DQP+ A+      L+ +P  VT++T MAR+ E L     SVK YK +L  ++  
Sbjct:   258 KAYNRVDQPMAALKTYSAGLEVFPENVTMLTGMARVQEALGEYDESVKLYKRVLDAESNN 317

Query:   425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 484
             +EAIAC+   ++Y  +PE+A+ +YRR+LQMG+ + ELF N+ LCC  +QQ+D  ++   R
Sbjct:   318 IEAIACVATTYYYGGKPELAMRYYRRILQMGVSSPELFLNIGLCCMAAQQFDFALSSILR 377

Query:   485 ALSLALNENAADVWYNISHVAI 506
             A S   ++ AADVWYNI  + +
Sbjct:   378 AQSTMTDDVAADVWYNIGQILV 399

GO:0035058 "nonmotile primary cilium assembly" evidence=IEP

GO:0043005 "neuron projection" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VD72	TTC8_MOUSE	No assigned EC number	0.4989	0.6543	0.8601	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	677
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQP 519
           E   NL    +    YD  +  +E+AL L  + + AD +YN++               + 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYY--------KLGKY 50

Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
           E AL  Y + L++   NA+ + NL L  +   +Y+  +  +E+AL L
Sbjct: 51  EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 21/96 (21%), Positives = 47/96 (48%)

Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 452
            +  +  ++  L +   +++YY+  L+ D    +A   +   ++   + E AL  Y + L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 453 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
           ++   NA+ + NL L  +   +Y+  +  +E+AL L
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)

Query: 538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHT 597
           E   NL    +    YD  +  +E+AL L  + + AD +YN++                 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAA--------------- 43

Query: 598 SYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657
              +  G      A++    AL +D  +  +  NL +   + G  E A    + A    P
Sbjct: 44  --YYKLG--KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490
           +G  ++     + AL +Y + L++   NA+ + NLA   +   +Y+  +  +E+AL   L
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--L 63

Query: 491 NENAADVWYNI 501
           + + A  +YN+
Sbjct: 64  DPDNAKAYYNL 74

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
           AL +Y + L++   NA+ + NLA   +   +Y+  +  +E+AL   L+ + A  +YN+
Sbjct: 19  ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNL 74

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
            LG  Y+ LG   EA + +  AL     + +A+  +   Y +L +   A++    AL+  
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
           P+       +   +  L     +++ Y+  L+ D
Sbjct: 65  PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 0.002
 Identities = 50/272 (18%), Positives = 86/272 (31%), Gaps = 28/272 (10%)

Query: 413 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCF 470
             + + K  A  +  +           +   AL      L++      A L   LAL   
Sbjct: 11  LLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALL 70

Query: 471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL 530
              + +  +   E+AL L L  N A+   N+  +             + E AL    + L
Sbjct: 71  KLGRLEEALELLEKALELELLPNLAEALLNLGLLLE--------ALGKYEEALELLEKAL 122

Query: 531 QMGLYNAELFNNLALCCFYSQ-QYDMVVTCFERALSLA-LNENAADVWYNISHV------ 582
            +          LAL   Y    Y+  +  +E+AL L       A+    +  +      
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 583 -----AIITECSPFSFSTHTSYLFIQGIS-----DTRLAIQCLHLALSIDSSHGLSQNNL 632
                 ++ +    +       L   G+          A++    AL +D  +  +  NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242

Query: 633 AVLEAREGHIERASTYLQAAAASSPYLYETHY 664
           A+L    G  E A   L+ A    P LY    
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGL 274

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	677
KOG1129|consensus	478		100.0
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
KOG1129|consensus	478		100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
KOG2002|consensus	1018		99.97
KOG2002|consensus	1018		99.97
KOG1155|consensus	559		99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG0547|consensus	606		99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.96
KOG1126|consensus	638		99.96
KOG1155|consensus	559		99.95
KOG0547|consensus	606		99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG1126|consensus	638		99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
KOG0548|consensus	539		99.92
KOG1173|consensus	611		99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.92
KOG0624|consensus	504		99.92
KOG1173|consensus	611		99.91
KOG2003|consensus	840		99.91
KOG2076|consensus	895		99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG2003|consensus	840		99.9
KOG0495|consensus	913		99.9
KOG2076|consensus	895		99.9
KOG0495|consensus	913		99.89
KOG0624|consensus	504		99.88
KOG1174|consensus	564		99.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.88
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.87
PLN03077	857	Protein ECB2; Provisional	99.86
PLN03218	1060	maturation of RBCL 1; Provisional	99.86
KOG1174|consensus	564		99.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.86
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
KOG0548|consensus	539		99.85
PRK12370	553	invasion protein regulator; Provisional	99.85
KOG4162|consensus	799		99.85
PRK12370	553	invasion protein regulator; Provisional	99.85
PLN03077	857	Protein ECB2; Provisional	99.85
KOG4162|consensus	799		99.85
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.84
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
KOG1125|consensus	579		99.83
KOG1125|consensus	579		99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.82
KOG1127|consensus	1238		99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.79
KOG1156|consensus	700		99.79
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.79
KOG0550|consensus	486		99.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.78
PLN02789	320	farnesyltranstransferase	99.77
KOG0550|consensus	486		99.76
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.76
PLN02789	320	farnesyltranstransferase	99.75
KOG1127|consensus	1238		99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.74
KOG1840|consensus	508		99.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.72
KOG1156|consensus	700		99.71
KOG1840|consensus	508		99.7
KOG2376|consensus	652		99.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
KOG1915|consensus	677		99.65
KOG3785|consensus	557		99.64
KOG1915|consensus	677		99.64
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.6
KOG2376|consensus	652		99.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.58
KOG3785|consensus	557		99.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
KOG1130|consensus	639		99.52
KOG1130|consensus	639		99.52
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.51
KOG1128|consensus	777		99.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
KOG3060|consensus	289		99.49
KOG4340|consensus	459		99.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.48
KOG3060|consensus	289		99.47
PRK04841	903	transcriptional regulator MalT; Provisional	99.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.46
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.45
KOG1128|consensus	777		99.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.39
PRK04841	903	transcriptional regulator MalT; Provisional	99.39
KOG4340|consensus	459		99.38
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.37
KOG2047|consensus	835		99.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.36
KOG0553|consensus	304		99.36
KOG2047|consensus	835		99.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.32
KOG0553|consensus	304		99.3
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.27
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.25
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.16
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.04
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.0
KOG1941|consensus	518		98.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.96
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.95
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.95
KOG1070|consensus	1710		98.94
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.94
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.93
KOG2471|consensus	696		98.92
KOG1941|consensus	518		98.92
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.92
KOG3617|consensus	1416		98.91
KOG1070|consensus	1710		98.91
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.9
KOG2471|consensus	696		98.9
KOG3081|consensus	299		98.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.88
PRK15331	165	chaperone protein SicA; Provisional	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.87
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.86
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.83
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.83
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.82
KOG3081|consensus	299		98.81
KOG2053|consensus	932		98.79
PRK11906	458	transcriptional regulator; Provisional	98.79
PRK11906	458	transcriptional regulator; Provisional	98.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.76
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.75
KOG0543|consensus	397		98.74
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.74
PRK15331	165	chaperone protein SicA; Provisional	98.73
KOG3617|consensus	1416		98.73
KOG4648|consensus	536		98.72
KOG0543|consensus	397		98.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.67
PRK10803	263	tol-pal system protein YbgF; Provisional	98.67
PRK10803	263	tol-pal system protein YbgF; Provisional	98.66
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.65
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
KOG2053|consensus	932		98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.59
PF12688	120	TPR_5: Tetratrico peptide repeat	98.58
KOG4648|consensus	536		98.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.54
PF13371	73	TPR_9: Tetratricopeptide repeat	98.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.49
KOG2796|consensus	366		98.48
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.48
PF13512	142	TPR_18: Tetratricopeptide repeat	98.45
KOG4234|consensus	271		98.44
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.44
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.44
KOG4234|consensus	271		98.43
KOG2796|consensus	366		98.39
PF13371	73	TPR_9: Tetratricopeptide repeat	98.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.32
KOG2300|consensus	629		98.3
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.3
PF13512	142	TPR_18: Tetratricopeptide repeat	98.24
KOG1914|consensus	656		98.23
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.22
KOG1586|consensus	288		98.22
KOG4555|consensus	175		98.18
KOG2610|consensus	491		98.13
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.13
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.12
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.11
KOG4555|consensus	175		98.11
KOG1586|consensus	288		98.07
PF13428	44	TPR_14: Tetratricopeptide repeat	98.06
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.06
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.03
KOG1585|consensus	308		98.02
KOG2300|consensus	629		98.0
KOG3616|consensus	1636		98.0
KOG1258|consensus	577		98.0
KOG0985|consensus	1666		97.99
KOG4507|consensus	886		97.95
KOG1550|consensus	552		97.92
KOG2610|consensus	491		97.89
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.89
KOG0985|consensus	1666		97.88
KOG1550|consensus	552		97.87
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.87
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.82
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.81
KOG1585|consensus	308		97.8
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.71
PF13431	34	TPR_17: Tetratricopeptide repeat	97.71
PF13428	44	TPR_14: Tetratricopeptide repeat	97.69
KOG4642|consensus	284		97.69
KOG3616|consensus	1636		97.66
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.65
KOG1914|consensus	656		97.65
KOG4642|consensus	284		97.65
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.63
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.62
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.62
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.58
KOG0530|consensus	318		97.55
PF13431	34	TPR_17: Tetratricopeptide repeat	97.53
KOG0376|consensus	476		97.51
KOG0530|consensus	318		97.51
KOG0376|consensus	476		97.46
KOG0545|consensus	329		97.45
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.41
KOG4507|consensus	886		97.4
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.36
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.36
KOG1258|consensus	577		97.36
KOG0545|consensus	329		97.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.29
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.29
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.28
KOG0890|consensus	2382		97.25
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.17
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.16
KOG2041|consensus	1189		97.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.08
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.07
KOG0890|consensus	2382		97.07
KOG0551|consensus	390		97.04
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.02
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.02
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.02
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.02
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.01
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.96
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.91
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.87
KOG0551|consensus	390		96.86
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.79
KOG1308|consensus	377		96.69
KOG3824|consensus	472		96.66
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.64
KOG1308|consensus	377		96.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.4
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.35
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.33
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.18
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.17
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.07
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.02
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.97
PRK10941	269	hypothetical protein; Provisional	95.93
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.89
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.75
KOG1538|consensus	1081		95.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.52
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.48
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.43
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.42
KOG3783|consensus	546		95.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.27
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.25
KOG2396|consensus	568		95.19
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.11
KOG1464|consensus	440		95.1
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.1
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.95
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.91
KOG2041|consensus	1189		94.9
KOG3824|consensus	472		94.86
KOG2581|consensus	493		94.79
KOG3783|consensus	546		94.78
PRK10941	269	hypothetical protein; Provisional	94.76
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.68
KOG1464|consensus	440		94.57
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.55
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.35
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.35
KOG3364|consensus	149		94.32
KOG4014|consensus	248		94.24
KOG3364|consensus	149		94.02
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.96
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.93
PRK11619	644	lytic murein transglycosylase; Provisional	93.9
KOG0128|consensus	881		93.89
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.56
KOG1538|consensus	1081		93.53
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.49
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.46
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.38
KOG2422|consensus	665		93.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.24
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.04
KOG1463|consensus	411		92.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.42
KOG0128|consensus	881		92.34
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.32
KOG4814|consensus	872		92.18
KOG4814|consensus	872		92.17
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.93
KOG2581|consensus	493		91.53
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.32
KOG1310|consensus	758		91.31
KOG0529|consensus	421		91.26
KOG1310|consensus	758		91.15
KOG1839|consensus	1236		91.13
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.01
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.85
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.8
KOG1839|consensus	1236		90.51
KOG2422|consensus	665		90.36
KOG3807|consensus	556		90.01
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.81
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.6
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.39
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.21
COG2912	269	Uncharacterized conserved protein [Function unknow	89.14
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.04
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.71
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.62
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.47
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.38
KOG2063|consensus	877		88.02
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.57
KOG2396|consensus	568		87.3
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	86.91
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.52
PF13041	50	PPR_2: PPR repeat family	86.41
KOG3807|consensus	556		86.39
COG2912	269	Uncharacterized conserved protein [Function unknow	86.17
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.6
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.39
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.72
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.2
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.19
PF13041	50	PPR_2: PPR repeat family	84.14
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.65
KOG1463|consensus	411		83.01
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.89
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.58
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	82.47
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.8
COG4941	415	Predicted RNA polymerase sigma factor containing a	81.72
KOG4014|consensus	248		81.65
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	81.27
KOG2114|consensus	933		81.11
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	80.58
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	80.24

>KOG1129|consensus

Probab=100.00  E-value=2.3e-68  Score=492.03  Aligned_cols=459  Identities=43%  Similarity=0.693  Sum_probs=432.4

Q ss_pred             ccchHHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccccccchhhhhccchhhhccCCCCcc
Q psy16607         11 TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTS   90 (677)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (677)
                      -+-++|+|+++||++.|+.|++.|+.+|++-|+++++|.|||||||+++||||+|.+++|+++.|||.|.||+.+|||||
T Consensus         4 ~~~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS   83 (478)
T KOG1129|consen    4 LELDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTS   83 (478)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcch
Q psy16607         91 LKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLE  170 (677)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~  170 (677)
                      +++|.                                                                           
T Consensus        84 ~k~p~---------------------------------------------------------------------------   88 (478)
T KOG1129|consen   84 IKTPF---------------------------------------------------------------------------   88 (478)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            99532                                                                           


Q ss_pred             hccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCC
Q psy16607        171 AEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPL  250 (677)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  250 (677)
                                        .++||          +++..||.+..|||++|+.||.++++++|++++|.+++|.+.++|++
T Consensus        89 ------------------t~~~g----------~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~  140 (478)
T KOG1129|consen   89 ------------------TPRPG----------TSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSL  140 (478)
T ss_pred             ------------------CCCCC----------CchhhcchhhcCCCCccccCccccCCCCccHHhhccCcccccccccc
Confidence                              01222          34556888999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhC---------cC
Q psy16607        251 TSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKAC---------EF  321 (677)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~---------p~  321 (677)
                      ++.+++.+|+|+++|...+.+.|+++.++|+.+++.++.+.+.++.+++++.+|.+.|...+...++..         ..
T Consensus       141 ~S~sgr~~RlgtaSmaa~~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~  220 (478)
T KOG1129|consen  141 GSRSGRASRLGTASMAAFNDGKFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCT  220 (478)
T ss_pred             ccccchhhhhhhhhhhccCCcceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccch
Confidence            999999999999999999999999999999999999999999999999999999999998777766432         26


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607        322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF  401 (677)
Q Consensus       322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  401 (677)
                      .+|||...+|+||++.|.+.+|.+.++..++..|.++++..++++|.+.+++..|+..+.+.++..|.+...+...+.++
T Consensus       221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH  300 (478)
T ss_pred             HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       402 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  481 (677)
                      ..++++++|.++|+.+++.+|.++++...+|.-|+..++++-|+.+|++.+++...+++.+.++|.|++..++++-++..
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607        482 FERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF  560 (677)
Q Consensus       482 ~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  560 (677)
                      |++++.....+ ...++|+++|.+..        ..|++.-|.++|+-++..++++.+++++||.+-.+.|+.++|..++
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV--------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAV--------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL  452 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEE--------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence            99999876643 56899999999998        9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHH
Q psy16607        561 ERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       561 ~~al~~~~~p~~~~~~~~l~~~  582 (677)
                      ..+-.  ..|+..+..++++.+
T Consensus       453 ~~A~s--~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  453 NAAKS--VMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHhhh--hCccccccccceeEE
Confidence            99998  788888877777654

>KOG4626|consensus

Probab=100.00  E-value=1.4e-45  Score=366.95  Aligned_cols=456  Identities=18%  Similarity=0.195  Sum_probs=288.4

Q ss_pred             CCCcccchHHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccccccchhhhhccchhhhccCC
Q psy16607          7 APTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAAR   86 (677)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (677)
                      +...+.|-+=.|.++++.|+|.+|.+-|+.+-..||.+.+...+-.--..+..++|.      -  .+   -+.++.  |
T Consensus        44 t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~------s--~a---~~~~a~--r  110 (966)
T KOG4626|consen   44 THEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDK------S--SA---GSLLAI--R  110 (966)
T ss_pred             CCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhh------h--hh---hhhhhh--h
Confidence            466788999999999999999999999999999999998765543322222111110      0  00   000100  1


Q ss_pred             CCcccccccCccCcccccccCCCCCCCccccChHH-HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhh
Q psy16607         87 PGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMF-YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLS  165 (677)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~  165 (677)
                      ..+                         ...+.+- +|..+-.+|++++|+..|..++++.|+...+|..++.+|...  
T Consensus       111 ~~~-------------------------q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~--  163 (966)
T KOG4626|consen  111 KNP-------------------------QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ--  163 (966)
T ss_pred             ccc-------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc--
Confidence            110                         1113343 789999999999999999999999999999998888777655  


Q ss_pred             hhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCccccc
Q psy16607        166 VDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAK  245 (677)
Q Consensus       166 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  245 (677)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (966)
T KOG4626|consen  164 --------------------------------------------------------------------------------  163 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHH
Q psy16607        246 SARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWW  325 (677)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  325 (677)
                                                                               |+.+.|.+.|..+++.+|.. .-
T Consensus       164 ---------------------------------------------------------~~~~~a~~~~~~alqlnP~l-~c  185 (966)
T KOG4626|consen  164 ---------------------------------------------------------GDLELAVQCFFEALQLNPDL-YC  185 (966)
T ss_pred             ---------------------------------------------------------CCCcccHHHHHHHHhcCcch-hh
Confidence                                                                     22223334444445555322 22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607        326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL  404 (677)
Q Consensus       326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  404 (677)
                      ....+|..+-..|+..+|..+|.++++..| -..+|..+|.++...|+...|+..|+++++++|...++|+++|.+|...
T Consensus       186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~  265 (966)
T KOG4626|consen  186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA  265 (966)
T ss_pred             hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH
Confidence            224455555555666666666666666555 4455666666666666666666666666666666666666666666666


Q ss_pred             CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER  484 (677)
Q Consensus       405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  484 (677)
                      +.+++|+.+|.+++.+.|.+..++.++|.+|..+|..+-|+..|+++++..|+.+++++++|..+...|+..+|+.+|.+
T Consensus       266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK  345 (966)
T ss_pred             hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       485 al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                      ++.+.|+.  +++.+++|.++.        ++|.+++|...|.++++..|..+.++.+||.+|.++|++++|+.+|+.++
T Consensus       346 aL~l~p~h--adam~NLgni~~--------E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal  415 (966)
T KOG4626|consen  346 ALRLCPNH--ADAMNNLGNIYR--------EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL  415 (966)
T ss_pred             HHHhCCcc--HHHHHHHHHHHH--------HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence            66666665  666666666665        66666666666666666666666666666666666666666666666666


Q ss_pred             HHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH
Q psy16607        565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  644 (677)
Q Consensus       565 ~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  644 (677)
                      .  +.|..++++.++|..|.                   .+|+.+.|+.+|.+++.++|..++++.+||.+|...|+..+
T Consensus       416 r--I~P~fAda~~NmGnt~k-------------------e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~  474 (966)
T KOG4626|consen  416 R--IKPTFADALSNMGNTYK-------------------EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE  474 (966)
T ss_pred             h--cCchHHHHHHhcchHHH-------------------HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence            6  56666666666666665                   66666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        645 ASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       645 A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      |+..|++++.+.|+.++++.|++.++.
T Consensus       475 AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  475 AIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             HHHHHHHHHccCCCCchhhhHHHHHHH
Confidence            666666666666666666666665543

>KOG4626|consensus

Probab=100.00  E-value=1.8e-44  Score=359.19  Aligned_cols=351  Identities=18%  Similarity=0.155  Sum_probs=339.0

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607        295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP  373 (677)
Q Consensus       295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~  373 (677)
                      ++.++..+|++++|+..|+.+++..|.. ...+.++|.++...|+.+.|..+|.++++++| ..-+...+|.++...|+.
T Consensus       122 ~aN~~kerg~~~~al~~y~~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl  200 (966)
T KOG4626|consen  122 LANILKERGQLQDALALYRAAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL  200 (966)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence            3445566899999999999999999644 44448999999999999999999999999999 678889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      .+|..+|.++++..|.-..+|.++|.++...|+...|+..|+++++++|...++|++||.+|...+.++.|+.+|.+++.
T Consensus       201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~  280 (966)
T KOG4626|consen  201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN  280 (966)
T ss_pred             chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC
Q psy16607        454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG  533 (677)
Q Consensus       454 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~  533 (677)
                      ..|++..++.++|.+|..+|..+-|+.+|++++++.|+-  ++++.+++..+.        ..|+..+|..+|.+++.+.
T Consensus       281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALk--------d~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF--PDAYNNLANALK--------DKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHH--------hccchHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999996  999999999998        8999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      |+++++.++||.++..+|.+++|..+|+++++  ..|+...++.+||.+|.                   ++|++++|+.
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k-------------------qqgnl~~Ai~  409 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK-------------------QQGNLDDAIM  409 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH-------------------hcccHHHHHH
Confidence            99999999999999999999999999999999  89999999999999999                   9999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCCC
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP  677 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ip  677 (677)
                      +|++++.+.|..++++.++|..|..+|+.+.|+.+|.+|+.++|...+++.|||.+|...|+||
T Consensus       410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~  473 (966)
T KOG4626|consen  410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP  473 (966)
T ss_pred             HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence            9999999999999999999999999999999999999999999999999999999999999997

>KOG1129|consensus

Probab=100.00  E-value=4e-41  Score=311.60  Aligned_cols=461  Identities=31%  Similarity=0.420  Sum_probs=303.1

Q ss_pred             ccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCC
Q psy16607        116 TVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTS  195 (677)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (677)
                      .+-++++|+++|++++|+.|.+.|+.+|+..|+++++|.+|+++|+++.|+||+|.|+.|++++++|.+.|++++|||+|
T Consensus         4 ~~~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS   83 (478)
T KOG1129|consen    4 LELDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTS   83 (478)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCc
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCCcccccCCCCCCCCCCc----hhhhhcCcccccccCCCcchhhhhhhhcccccccCCC
Q psy16607        196 LKTAAVTAPALTSRPRTE-SGRPVSGVVRPGTLASRGGT----LEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPD  270 (677)
Q Consensus       196 ~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (677)
                      +++|.+      .+|.+. ..||.+...||-+...++..    .....+..|...++++.++       ++.      ..
T Consensus        84 ~k~p~t------~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~-------~~S------~s  144 (478)
T KOG1129|consen   84 IKTPFT------PRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARS-------LGS------RS  144 (478)
T ss_pred             ccCCCC------CCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccc-------ccc------cc
Confidence            999853      222222 34444444443332222211    1111111111111221111       111      11


Q ss_pred             ccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCc----CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        271 GPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACE----FRDWWWKVQLGKCYFSLGLIREAQQQ  346 (677)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~~la~~~~~~g~~~~A~~~  346 (677)
                      +.+..+..            +.    .+....|.+-.       +..++|    ..........-.+++...+...|...
T Consensus       145 gr~~Rlgt------------aS----maa~~dG~f~n-------lsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~  201 (478)
T KOG1129|consen  145 GRASRLGT------------AS----MAAFNDGKFYN-------LSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSL  201 (478)
T ss_pred             chhhhhhh------------hh----hhccCCcceee-------hhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHH
Confidence            11111110            00    00111221111       111111    00111111112233344444444444


Q ss_pred             HHHHHccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607        347 FNSALNQF---TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT  423 (677)
Q Consensus       347 ~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  423 (677)
                      +...++..   |..           ..+               .-.+......+|.+|.++|-+.+|.+.++..++..| 
T Consensus       202 ~~~~~~~~~a~~s~-----------~~~---------------~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-  254 (478)
T KOG1129|consen  202 CQAVLEVERAKPSG-----------STG---------------CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-  254 (478)
T ss_pred             HHHHHHHHhccccc-----------ccc---------------chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence            33333221   000           000               000111223455555555555555555555555444 


Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q psy16607        424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  503 (677)
Q Consensus       424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  503 (677)
                      .++.+..++.+|.+..++..|+..+.+.++..|.+...+..++.++..++++++|.++|+.+++..|.+  .++...++.
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAcia~  332 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACIAV  332 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeeeee
Confidence            455555666666666666666666666666666666666666666666666666666666666666665  444333333


Q ss_pred             HHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHH
Q psy16607        504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHV  582 (677)
Q Consensus       504 ~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~l~~~  582 (677)
                      -|        |..++++-|+.+|++.+++.-.+++.+.++|.|+...++++-++..|++++....+|+ ..++|+++|.+
T Consensus       333 ~y--------fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  333 GY--------FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             cc--------ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence            33        3778888888888888888889999999999999999999999999999999776564 56999999999


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                      ..                   ..|++.-|..+|+-++..++++.+++++||.+-.+.|+.++|..++..+-...|+..+.
T Consensus       405 aV-------------------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  405 AV-------------------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             EE-------------------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence            98                   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy16607        663 HYNQAVISNLVS  674 (677)
Q Consensus       663 ~~~la~~~~~~G  674 (677)
                      .+|++.+-...|
T Consensus       466 ~~Nl~~~s~~~g  477 (478)
T KOG1129|consen  466 TTNLQFMSVHYG  477 (478)
T ss_pred             ccceeEEeeecC
Confidence            999887655444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=9.4e-37  Score=358.34  Aligned_cols=365  Identities=15%  Similarity=0.095  Sum_probs=180.8

Q ss_pred             HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHH
Q psy16607        298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A  376 (677)
                      .+...|++++|+..+++.....|.... .+..+|.++...|++++|+..|+++++..| +..++..++.++...|++++|
T Consensus       440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  518 (899)
T TIGR02917       440 SYLRSGQFDKALAAAKKLEKKQPDNAS-LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA  518 (899)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            344445555555555555544432222 224455555555555555555555555444 444455555555555555555


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607        377 IDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  456 (677)
Q Consensus       377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  456 (677)
                      +..+++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  598 (899)
T TIGR02917       519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP  598 (899)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            55555555555555555555555555555555555555555555555444455555555555555555555555555445


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      .++..|..+|.++...|++++|+..|+++++..|.+  ..++..++.++.        ..|++++|+..|+++++.+|++
T Consensus       599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~  668 (899)
T TIGR02917       599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS--ALALLLLADAYA--------VMKNYAKAITSLKRALELKPDN  668 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCC
Confidence            555555555555555555555555555555444444  444444444444        4455555555555555444444


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc--------------CCCCcccchhhhHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC--------------SPFSFSTHTSYLFI  602 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~--------------~p~~~~~~~~~~~l  602 (677)
                      ..++..++.++...|++++|+..++.+..  ..|.....+..+|.++...+.              .|...........+
T Consensus       669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  746 (899)
T TIGR02917       669 TEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL  746 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence            44444444444444444444444444444  334444444444443332221              11110001111133


Q ss_pred             hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      ...|++++|+..++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.++.+++.++...|+
T Consensus       747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence            3555666666666666555555555566666666666666666666666666666555555555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.5e-36  Score=356.60  Aligned_cols=606  Identities=15%  Similarity=0.090  Sum_probs=337.3

Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccc-cccccchhhhhccchhhhccCCCCcccc
Q psy16607         14 SMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDL-EAEEEGIADSVLDTNTIATAARPGTSLK   92 (677)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (677)
                      -+-.|..++..|+|++|+..+.+++.++|.+..+|+..++++..++.+++. ...+..+..-  +...... ..-|....
T Consensus        25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~-~~~a~~~~  101 (899)
T TIGR02917        25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVL-PLLARAYL  101 (899)
T ss_pred             HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhH-HHHHHHHH
Confidence            566899999999999999999999999999999999999999999998885 3333322211  0000000 00111222


Q ss_pred             cccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhc
Q psy16607         93 TAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAE  172 (677)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~  172 (677)
                      ..++++.++...........+....--+.+|..++..|++++|.+.|+++++.+|.+..+|...+.++...+.+++....
T Consensus       102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  181 (899)
T TIGR02917       102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL  181 (899)
T ss_pred             HCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH
Confidence            23344444443332110011111112255889999999999999999999999999999999999998887766664332


Q ss_pred             cccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCCcc
Q psy16607        173 EEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTS  252 (677)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  252 (677)
                      -+..         +..  .|..                  ...     ....+......|..+.|....+.+....|...
T Consensus       182 ~~~~---------~~~--~~~~------------------~~~-----~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  227 (899)
T TIGR02917       182 IDEV---------LTA--DPGN------------------VDA-----LLLKGDLLLSLGNIELALAAYRKAIALRPNNP  227 (899)
T ss_pred             HHHH---------HHh--CCCC------------------hHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence            1110         000  0000                  000     00000000112233333322111111111111


Q ss_pred             hhhhhhhhcccccccC----CCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHH
Q psy16607        253 QAARTIRLGTASMLSQ----PDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKV  328 (677)
Q Consensus       253 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  328 (677)
                        .....++...+..+    ....+..+....+..     .....+.+.+++..|++++|+..++++++..|..... +.
T Consensus       228 --~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~  299 (899)
T TIGR02917       228 --AVLLALATILIEAGEFEEAEKHADALLKKAPNS-----PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA-LL  299 (899)
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HH
Confidence              00011111110000    000111111111111     1122334444555566666666666666555432222 24


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      .+|.++...|++++|+..|+++++..| +..++..++.++...|++++|+..+++++...|.+...+..+|.++...|++
T Consensus       300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  379 (899)
T TIGR02917       300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF  379 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence            555555666666666666666655555 4455555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      ++|+.+|+++++.+|++...+..++.++...|++++|+..+++++...|........++..+...|++++|+..+++.+.
T Consensus       380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  459 (899)
T TIGR02917       380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK  459 (899)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555554444444444444444444444444444444


Q ss_pred             hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607        488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  567 (677)
Q Consensus       488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  567 (677)
                      ..|.+  ...+..+|.++.        ..|++++|+..|+++++.+|.+..++..++.++...|++++|+..|++++.  
T Consensus       460 ~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--  527 (899)
T TIGR02917       460 KQPDN--ASLHNLLGAIYL--------GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT--  527 (899)
T ss_pred             hCCCC--cHHHHHHHHHHH--------hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            44443  444444444444        444444444444444444444444444444444444444444444444444  


Q ss_pred             hccchHHHHHHHHHHHHHhhc--------------CCCCcccc-hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHH
Q psy16607        568 LNENAADVWYNISHVAIITEC--------------SPFSFSTH-TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL  632 (677)
Q Consensus       568 ~~p~~~~~~~~l~~~~~~~~~--------------~p~~~~~~-~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  632 (677)
                      ..|.+..++..++.++...+.              .|...... .....+...|++++|+..+++++...|.++.+|..+
T Consensus       528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  607 (899)
T TIGR02917       528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML  607 (899)
T ss_pred             hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            344444444444444432221              11111111 111133499999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        633 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       633 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      |.++...|++++|+..|+++++.+|+++.++..++.++...|+.
T Consensus       608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  651 (899)
T TIGR02917       608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY  651 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999998875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.1e-35  Score=348.63  Aligned_cols=580  Identities=15%  Similarity=0.070  Sum_probs=405.1

Q ss_pred             CCCcccchHHHHHH-HHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccc-cccchhhhhccchh----
Q psy16607          7 APTATVDSMFYAVD-HFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEA-EEEGIADSVLDTNT----   80 (677)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----   80 (677)
                      .-.++++-++.-.. -..++|++.|.+.+.+++.++|.|.+++...++++..++.+++... .+....-.  +.+.    
T Consensus        23 ~~~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~  100 (1157)
T PRK11447         23 AAPTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS  100 (1157)
T ss_pred             ccCCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH
Confidence            33456665554444 4467899999999999999999999999999999998888888633 22211111  1110    


Q ss_pred             ----hhccCCCC-------cccccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCC
Q psy16607         81 ----IATAARPG-------TSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYD  149 (677)
Q Consensus        81 ----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~  149 (677)
                          +....-.|       ..+...++++.++...........+.......+........|++++|++.++++++.+|++
T Consensus       101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~  180 (1157)
T PRK11447        101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN  180 (1157)
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC
Confidence                00000011       1122344555555444433222111111111122233334588888888888888888888


Q ss_pred             chhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q psy16607        150 KAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLAS  229 (677)
Q Consensus       150 ~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  229 (677)
                      ..++...++++...+..++....-+.+..                   .+              ..+.....        
T Consensus       181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~-------------------~~--------------~~~~~aa~--------  219 (1157)
T PRK11447        181 TGLRNTLALLLFSSGRRDEGFAVLEQMAK-------------------SP--------------AGRDAAAQ--------  219 (1157)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHhh-------------------CC--------------CchHHHHH--------
Confidence            88888888888776665554332111100                   00              00000000        


Q ss_pred             CCCchhhhhcCcccccccCCCcch-hhhhhhhcccccccCCCccchh--hhhhhh-hhhhchHHHHHHHHHHHHhcccCH
Q psy16607        230 RGGTLEQSLKTPRTAKSARPLTSQ-AARTIRLGTASMLSQPDGPFIQ--VSRLNL-AKYARDKTVAKYLFEYLYHHENDV  305 (677)
Q Consensus       230 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~-~~~~~~~~~a~~l~~~~~~~~g~~  305 (677)
                         ...+.+.       ..+.... ...+.++-  ...  +......  ...+.. ......+.....+.+.++...|++
T Consensus       220 ---~~~~~l~-------~~~~~~~~~~~l~~~l--~~~--p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~  285 (1157)
T PRK11447        220 ---LWYGQIK-------DMPVSDASVAALQKYL--QVF--SDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG  285 (1157)
T ss_pred             ---HHHHHHh-------ccCCChhhHHHHHHHH--HHC--CCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH
Confidence               0000000       0000000 00000000  000  0000000  000000 000011122223457778889999


Q ss_pred             HHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CH--H------------HHHHHHHHHHHc
Q psy16607        306 ASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DI--E------------AFIRMIRVYIRL  370 (677)
Q Consensus       306 ~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~--~------------~~~~la~~~~~~  370 (677)
                      ++|+..|+++++..|. +...+..+|.++...|++++|+..|+++++..| +.  .            ....++.++...
T Consensus       286 ~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~  364 (1157)
T PRK11447        286 GKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA  364 (1157)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence            9999999999999954 455568999999999999999999999999887 21  1            224558888999


Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHH-----------------
Q psy16607        371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV-----------------  433 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------  433 (677)
                      |++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|.+..++..++.                 
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999998776655544                 


Q ss_pred             -------------------------HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607        434 -------------------------NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  488 (677)
Q Consensus       434 -------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  488 (677)
                                               ++...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..|++++..
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~  524 (1157)
T PRK11447        445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ  524 (1157)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                                     3456799999999999999999999999999999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH---------------------------------------
Q psy16607        489 ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL---------------------------------------  529 (677)
Q Consensus       489 ~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a---------------------------------------  529 (677)
                      .|++  +..++.++..+.        ..+++++|+..++++                                       
T Consensus       525 ~P~~--~~~~~a~al~l~--------~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        525 KPND--PEQVYAYGLYLS--------GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             CCCC--HHHHHHHHHHHH--------hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            9988  777777766554        445555554443321                                       


Q ss_pred             -HHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        530 -LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       530 -l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                       ++..|.++..+..+|.++.+.|++++|+..|++++.  .+|++..++..++.++.                   ..|++
T Consensus       595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~-------------------~~g~~  653 (1157)
T PRK11447        595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDI-------------------AQGDL  653 (1157)
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HCCCH
Confidence             235788889999999999999999999999999999  89999999999999999                   99999


Q ss_pred             HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHhcCC
Q psy16607        609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY------ETHYNQAVISNLVSV  675 (677)
Q Consensus       609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~G~  675 (677)
                      ++|+..++++++..|+++.++..+|.++...|++++|+.+|++++...|+++      ..+..+|.++...|+
T Consensus       654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~  726 (1157)
T PRK11447        654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ  726 (1157)
T ss_pred             HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999877654      355566888877775

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.9e-33  Score=327.80  Aligned_cols=333  Identities=15%  Similarity=0.084  Sum_probs=292.1

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDW-------------WWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D  356 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~  356 (677)
                      +...++.++.+.|++++|+..|+++++..|....             +....+|.++...|++++|+..|+++++.+| +
T Consensus       305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~  384 (1157)
T PRK11447        305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD  384 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4556778888899999999999999998874431             1223568888999999999999999999998 8


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHH-------------------------------------
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMAR-------------------------------------  399 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-------------------------------------  399 (677)
                      ..++..+|.++...|++++|+..|+++++.+|.+..++..++.                                     
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~  464 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL  464 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence            8899999999999999999999999999999988776654443                                     


Q ss_pred             -----HHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q psy16607        400 -----IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  474 (677)
Q Consensus       400 -----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  474 (677)
                           ++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++..|.++..++.++.++...++
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence                 445679999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             HHHHHHHHHHH----------------------------------------HhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607        475 YDMVVTCFERA----------------------------------------LSLALNENAADVWYNISHVAILNALSTSV  514 (677)
Q Consensus       475 ~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~~~l~~~~~l~~l~~~~  514 (677)
                      +++|+..++++                                        ++..|.+  ...+..++.++.        
T Consensus       545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~--~~~~~~La~~~~--------  614 (1157)
T PRK11447        545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS--TRIDLTLADWAQ--------  614 (1157)
T ss_pred             HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC--chHHHHHHHHHH--------
Confidence            88887776643                                        1234555  667888898888        


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS  594 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~  594 (677)
                      ..|++++|+..|+++++.+|+++.++..++.++...|++++|+..|++++.  ..|++...+..+|.++.          
T Consensus       615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~----------  682 (1157)
T PRK11447        615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWA----------  682 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHH----------
Confidence            999999999999999999999999999999999999999999999999998  78999999999999998          


Q ss_pred             cchhhhHHhcCCCHHHHHHHHHHHHccCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        595 THTSYLFIQGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       595 ~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                               ..|++++|+..|++++...|+++      .++..+|.++...|++++|+..|++++.
T Consensus       683 ---------~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        683 ---------ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             ---------hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                     99999999999999999876543      4667789999999999999999999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.4e-31  Score=297.52  Aligned_cols=352  Identities=12%  Similarity=0.022  Sum_probs=290.7

Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc
Q psy16607        292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL  370 (677)
Q Consensus       292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~  370 (677)
                      ..-.|..++..|+|++|+..|++++...|.  ...+.++|.||...|++++|+..++++++.+| +..+++.+|.+|..+
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            345677888899999999999999999973  44568999999999999999999999999999 899999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCcH------------------------------HHH--------------------------
Q psy16607        371 DQPIRAIDIGRNALDCYPNEV------------------------------TIM--------------------------  394 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~------------------------------~~~--------------------------  394 (677)
                      |++++|+..|..+...++.+.                              ..+                          
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD  287 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence            999999987766544332211                              011                          


Q ss_pred             -------HHHHHHH---HHcCChhHHHHHHHHHHHh---CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607        395 -------TEMARIF---EGLNNMPMSVKYYKLILKR---DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  461 (677)
Q Consensus       395 -------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  461 (677)
                             ..++..+   ...+++++|++.|++++..   .|....++..+|.++...|++++|+..|++++..+|.....
T Consensus       288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~  367 (615)
T TIGR00990       288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS  367 (615)
T ss_pred             cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence                   1111111   1235788999999999976   46678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN  541 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  541 (677)
                      +..+|.++...|++++|+..|+++++.+|++  ..+++.+|.++.        ..|++++|+..|+++++.+|++...+.
T Consensus       368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~kal~l~P~~~~~~~  437 (615)
T TIGR00990       368 YIKRASMNLELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHF--------IKGEFAQAGKDYQKSIDLDPDFIFSHI  437 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence            9999999999999999999999999999998  899999999998        899999999999999999999999999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                      .+|.++...|++++|+..|++++.  ..|+++.++..+|.++.                   ..|++++|+..|++++.+
T Consensus       438 ~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       438 QLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL-------------------DQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHhc
Confidence            999999999999999999999998  78999999999999998                   777777777777777777


Q ss_pred             CCCChHHH------HHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        622 DSSHGLSQ------NNLAVL-EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       622 ~p~~~~~~------~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      .|.+...+      ...+.+ +...|++++|+.+++++++++|++..++..+|.++...|++
T Consensus       497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~  558 (615)
T TIGR00990       497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV  558 (615)
T ss_pred             CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence            76543221      222222 33357777777777777777777777777777777777764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=4.2e-31  Score=293.61  Aligned_cols=263  Identities=13%  Similarity=0.093  Sum_probs=241.4

Q ss_pred             cCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCY---PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL  446 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  446 (677)
                      .+++++|+..|++++...   |....++..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            368999999999999864   77788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607        447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY  526 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~  526 (677)
                      .|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++  ...+..+|.++.        ..|++++|+..|
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~--------~~g~~~eA~~~~  456 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQY--------KEGSIASSMATF  456 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC--HHHHHHHHHHHH--------HCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998  889999999998        999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH------HHHHHHHHhhcCCCCcccchhhh
Q psy16607        527 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY------NISHVAIITECSPFSFSTHTSYL  600 (677)
Q Consensus       527 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~------~l~~~~~~~~~~p~~~~~~~~~~  600 (677)
                      +++++..|.++.++..+|.++...|++++|+..|++++.  ..|.....+.      ..+..+.                
T Consensus       457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~----------------  518 (615)
T TIGR00990       457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALF----------------  518 (615)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHH----------------
Confidence            999999999999999999999999999999999999999  6665433222      2222221                


Q ss_pred             HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       601 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                        ...|++++|+..+++++.++|++..++..+|.++...|++++|+.+|++++++.+...+.
T Consensus       519 --~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       519 --QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             --HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence              157999999999999999999999999999999999999999999999999999876653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=8.5e-30  Score=282.01  Aligned_cols=336  Identities=11%  Similarity=0.029  Sum_probs=309.8

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607        295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP  373 (677)
Q Consensus       295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~  373 (677)
                      +...+++.|++.+|+.+++..+...|..... +..+|.+....|++++|+..|++++..+| +..++..+|.++...|++
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~  126 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY  126 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence            3344566899999999999999999655444 47999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      ++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|++..++..++ .+...|++++|+..+++++.
T Consensus       127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~  205 (656)
T PRK15174        127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP  205 (656)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988887765 47889999999999999999


Q ss_pred             cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHH----HHHHHHH
Q psy16607        454 MGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV----ALLFYRR  528 (677)
Q Consensus       454 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~----A~~~~~~  528 (677)
                      ..|. .......++.++...|++++|+..|++++...|++  ..+++.+|.++.        ..|++++    |+..|++
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~--------~~G~~~eA~~~A~~~~~~  275 (656)
T PRK15174        206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYY--------QSGRSREAKLQAAEHWRH  275 (656)
T ss_pred             cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH--------HcCCchhhHHHHHHHHHH
Confidence            8763 44455667889999999999999999999999998  999999999998        8999986    8999999


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        529 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       529 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                      ++..+|+++.++..+|.++...|++++|+..+++++.  .+|+++.++..+|.++.                   ..|++
T Consensus       276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~-------------------~~G~~  334 (656)
T PRK15174        276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALR-------------------QVGQY  334 (656)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HCCCH
Confidence            9999999999999999999999999999999999999  89999999999999999                   99999


Q ss_pred             HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607        609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  663 (677)
Q Consensus       609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  663 (677)
                      ++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++....
T Consensus       335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~  389 (656)
T PRK15174        335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQS  389 (656)
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhh
Confidence            9999999999999999988888889999999999999999999999999875433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=3e-29  Score=283.00  Aligned_cols=335  Identities=13%  Similarity=0.036  Sum_probs=215.7

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCC---hH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQ---PI  374 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~---~~  374 (677)
                      .+.+.++...+....+..| .+...+..++......|++++|...|+++....+    .......++.+|...+.   ..
T Consensus       355 ~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             cCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence            3566666666666666553 3334446666777777777777777777766432    12233356666655543   11


Q ss_pred             -------------------------HHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH
Q psy16607        375 -------------------------RAIDIGRNALDCYPN--EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA  427 (677)
Q Consensus       375 -------------------------~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  427 (677)
                                               .+...+.+++...|.  +..+++.+|.++.. +++++|+..|.+++...|++. .
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~  511 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-Q  511 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-H
Confidence                                     123333444444555  66677777777765 667777777777777776543 3


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q psy16607        428 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL  507 (677)
Q Consensus       428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l  507 (677)
                      ...++.++...|++++|+..|++++...|.. ..+..+|.++...|++++|+.+|++++...|..  ...+..++.... 
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~-  587 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRY-  587 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHH-
Confidence            4455566666777777777777765554443 345666777777777777777777777776665  444444444443 


Q ss_pred             hhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh
Q psy16607        508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITE  587 (677)
Q Consensus       508 ~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~  587 (677)
                             ..|++++|+..|+++++.+|+ +..+.++|.++.+.|++++|+..|++++.  .+|+++.++.++|.++.   
T Consensus       588 -------~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~---  654 (987)
T PRK09782        588 -------IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW---  654 (987)
T ss_pred             -------hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH---
Confidence                   557777777777777777775 66777777777777777777777777777  66777777777777766   


Q ss_pred             cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                                      ..|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|++.......|
T Consensus       655 ----------------~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        655 ----------------DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             ----------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence                            7777777777777777777777777777777777777777777777777777777766666666


Q ss_pred             HHHHh
Q psy16607        668 VISNL  672 (677)
Q Consensus       668 ~~~~~  672 (677)
                      .+...
T Consensus       719 ~~~~~  723 (987)
T PRK09782        719 EQNQQ  723 (987)
T ss_pred             HHHHH
Confidence            55443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=2.5e-28  Score=270.37  Aligned_cols=318  Identities=11%  Similarity=-0.014  Sum_probs=297.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      ...+..+...|++++|+..++.++...| +..+++.++.+....|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~  125 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ  125 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            4667888999999999999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      +++|+..|++++.++|++..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++
T Consensus       126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l  204 (656)
T PRK15174        126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL  204 (656)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887765 4888999999999999999


Q ss_pred             hhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH----HHHHHHH
Q psy16607        487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM----VVTCFER  562 (677)
Q Consensus       487 ~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~  562 (677)
                      ...|.. .......++.++.        ..|++++|+..|++++..+|+++.++..+|.++...|++++    |+..|++
T Consensus       205 ~~~~~~-~~~~~~~l~~~l~--------~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~  275 (656)
T PRK15174        205 PFFALE-RQESAGLAVDTLC--------AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH  275 (656)
T ss_pred             hcCCCc-chhHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence            887643 1334445567776        89999999999999999999999999999999999999986    8999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCH
Q psy16607        563 ALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  642 (677)
Q Consensus       563 al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  642 (677)
                      ++.  .+|++..++..+|.++.                   ..|++++|+..+++++.++|+++.++..+|.++...|++
T Consensus       276 Al~--l~P~~~~a~~~lg~~l~-------------------~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~  334 (656)
T PRK15174        276 ALQ--FNSDNVRIVTLYADALI-------------------RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY  334 (656)
T ss_pred             HHh--hCCCCHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            999  89999999999999999                   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        643 ERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       643 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      ++|+..|++++..+|++...+..+|.++...|+.
T Consensus       335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~  368 (656)
T PRK15174        335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT  368 (656)
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence            9999999999999999988888889999988863

>KOG2002|consensus

Probab=99.97  E-value=7.7e-28  Score=253.46  Aligned_cols=534  Identities=16%  Similarity=0.144  Sum_probs=376.0

Q ss_pred             hHHHHHHHHhhhch--hHHHHHHHHHhhhCccchhhHHHHhhhhccccccccc-cccccchhhhhccchhhhccCCCCcc
Q psy16607         14 SMFYAVDHFHKRNF--EKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDL-EAEEEGIADSVLDTNTIATAARPGTS   90 (677)
Q Consensus        14 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (677)
                      .+.+++.++..|.-  +.|.+.|.-+|.++|.|.-+++-|++.+-....+-.+ -.-.+          ++-..  |+.-
T Consensus       131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~----------al~in--p~~~  198 (1018)
T KOG2002|consen  131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK----------ALRIN--PACK  198 (1018)
T ss_pred             hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH----------HHhcC--cccC
Confidence            45566666666665  9999999999999999999999999998765555443 22221          11111  1110


Q ss_pred             cccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcch
Q psy16607         91 LKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLE  170 (677)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~  170 (677)
                                          +.     .....+.++.++++-+.|+-.+..+|++||.+-.+....+...-...  |. +
T Consensus       199 --------------------aD-----~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~--d~-~  250 (1018)
T KOG2002|consen  199 --------------------AD-----VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFN--DS-D  250 (1018)
T ss_pred             --------------------CC-----ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc--ch-H
Confidence                                01     11335688999999999999999999999988777766554422221  00 0


Q ss_pred             hccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCC
Q psy16607        171 AEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPL  250 (677)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  250 (677)
                      ....|+                  ++                        +             ..+-.    .....|+
T Consensus       251 s~~~~~------------------~l------------------------l-------------~~ay~----~n~~nP~  271 (1018)
T KOG2002|consen  251 SYKKGV------------------QL------------------------L-------------QRAYK----ENNENPV  271 (1018)
T ss_pred             HHHHHH------------------HH------------------------H-------------HHHHh----hcCCCcH
Confidence            000000                  00                        0             00000    0000011


Q ss_pred             cchhhhhhhhcccccccCCCccchhhhhhhhhh--hhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHH
Q psy16607        251 TSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK--YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKV  328 (677)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  328 (677)
                      ..     ..+..--.+.+.......+..--...  ......-+..++|.+|+.+|+|++|..+|.++++.++.+....++
T Consensus       272 ~l-----~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  272 AL-----NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             HH-----HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            00     11111100111111111110000000  001122256678889999999999999999999999777677778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCcHHH----------
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLD----QPIRAIDIGRNALDCYPNEVTI----------  393 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~----------  393 (677)
                      .+|..+...|+++.|+.+|+++++..| +.++...+|.+|...+    ..+.|..+..++++..|.+.++          
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            999999999999999999999999998 7888888998888775    5567777777777777666554          


Q ss_pred             ----------------------------HHHHHHHHHHcCChhHHHHHHHHHHHh-----CcC-----CHHHHHHHHHHH
Q psy16607        394 ----------------------------MTEMARIFEGLNNMPMSVKYYKLILKR-----DAT-----CMEAIACIGVNH  435 (677)
Q Consensus       394 ----------------------------~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~  435 (677)
                                                  +.++|..++..|++++|...|.+++..     +++     +....+++|.++
T Consensus       427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~  506 (1018)
T KOG2002|consen  427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL  506 (1018)
T ss_pred             cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence                                        445666666677777777777777665     111     123467777777


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--------
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL--------  507 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l--------  507 (677)
                      ...++++.|.+.|..+++..|...+.+..+|.+....+...+|...+..++..+..+  +.+|..+|..+.-        
T Consensus       507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n--p~arsl~G~~~l~k~~~~~a~  584 (1018)
T KOG2002|consen  507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN--PNARSLLGNLHLKKSEWKPAK  584 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC--cHHHHHHHHHHHhhhhhcccc
Confidence            777777777777877777777777777777766667777777777777777776665  6666555543321        


Q ss_pred             ---------------------------hhhcc-----cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q psy16607        508 ---------------------------NALST-----SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  555 (677)
Q Consensus       508 ---------------------------~~l~~-----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  555 (677)
                                                 ..+.+     .-..+.+++|++.|.++++.+|.|..+-+.+|.++...|++.+
T Consensus       585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~  664 (1018)
T KOG2002|consen  585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE  664 (1018)
T ss_pred             cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence                                       11110     0122456899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC--CCChHHHHHHH
Q psy16607        556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID--SSHGLSQNNLA  633 (677)
Q Consensus       556 A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la  633 (677)
                      |+.+|.++.+  .-.+..++|.++|.||.                   .+|+|..|++.|+.+++..  .++.+++..||
T Consensus       665 A~dIFsqVrE--a~~~~~dv~lNlah~~~-------------------e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La  723 (1018)
T KOG2002|consen  665 ARDIFSQVRE--ATSDFEDVWLNLAHCYV-------------------EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA  723 (1018)
T ss_pred             HHHHHHHHHH--HHhhCCceeeeHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            9999999998  44568899999999999                   9999999999999999854  35689999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       634 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      .++++.|++.+|...+.+++.+.|.++...+|+|.+..+++
T Consensus       724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA  764 (1018)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999988764

>KOG2002|consensus

Probab=99.97  E-value=1e-27  Score=252.45  Aligned_cols=372  Identities=14%  Similarity=0.114  Sum_probs=308.3

Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C-HHHHHHHHHH
Q psy16607        292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDW---WWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D-IEAFIRMIRV  366 (677)
Q Consensus       292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~  366 (677)
                      ...++.-++..|+|+.+..+...++... ....   ..++.+|++|..+|+|++|..+|.++++.++ + .-.++.+|..
T Consensus       273 l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm  351 (1018)
T KOG2002|consen  273 LNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM  351 (1018)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence            3334444666899999999999999766 2222   2358999999999999999999999999988 4 7788999999


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChH
Q psy16607        367 YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN----NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE  442 (677)
Q Consensus       367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  442 (677)
                      ++..|++..|+.+|+++++..|++.+....+|.+|...+    ..++|..+..++++..|.+.++|..++.++....-+.
T Consensus       352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~  431 (1018)
T KOG2002|consen  352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA  431 (1018)
T ss_pred             HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence            999999999999999999999999999999999999886    6788999999999999999999999999987765554


Q ss_pred             HHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----ccc---chHHHHHHHHHHHHHhh
Q psy16607        443 VALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNE---NAADVWYNISHVAILNA  509 (677)
Q Consensus       443 ~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~~l~~~~~l~~  509 (677)
                      . +..|..++.+     .+-.++.++++|..++..|++++|...|.+++...     ++.   ......|+++.++.   
T Consensus       432 s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E---  507 (1018)
T KOG2002|consen  432 S-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE---  507 (1018)
T ss_pred             H-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH---
Confidence            4 9999988853     34568999999999999999999999999998771     111   11335899999998   


Q ss_pred             hcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-
Q psy16607        510 LSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC-  588 (677)
Q Consensus       510 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~-  588 (677)
                           ..++++.|.+.|...++.+|....++..+|......+...+|...++.++.  .+..++.+|..+|.++..... 
T Consensus       508 -----~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  508 -----ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             -----hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhh
Confidence                 899999999999999999999999999999888888999999999999999  899999999999988875544 


Q ss_pred             ------------CC-CCcccchh-----hh--HH--------hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC
Q psy16607        589 ------------SP-FSFSTHTS-----YL--FI--------QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  640 (677)
Q Consensus       589 ------------~p-~~~~~~~~-----~~--~l--------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  640 (677)
                                  .+ ...+.++.     +|  .+        ...+.+++|++.|.+++..+|.|..+-+.+|.++...|
T Consensus       581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg  660 (1018)
T KOG2002|consen  581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG  660 (1018)
T ss_pred             cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence                        01 11121111     11  11        14556789999999999999998887788888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        641 HIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       641 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      ++.+|+.+|.++.+--.++.++|.|+|.||..+|.
T Consensus       661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q  695 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ  695 (1018)
T ss_pred             CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence            88888888888877777777788888888877664

>KOG1155|consensus

Probab=99.97  E-value=2.3e-26  Score=223.72  Aligned_cols=352  Identities=15%  Similarity=0.161  Sum_probs=298.6

Q ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcC----------------------------CCHHHHHHHHHHHHHcCC
Q psy16607        288 KTVAKYLFEYLYHHENDVASAMDLAVESTKACEF----------------------------RDWWWKVQLGKCYFSLGL  339 (677)
Q Consensus       288 ~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~----------------------------~~~~~~~~la~~~~~~g~  339 (677)
                      ..+...+.|.++.+.|....|+..+..++...|.                            ..+...+.++.++....+
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q  242 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ  242 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence            3457778898888999999999999998887662                            122222345566666667


Q ss_pred             HHHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607        340 IREAQQQFNSALNQ-FT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI  417 (677)
Q Consensus       340 ~~~A~~~~~~al~~-~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  417 (677)
                      .++++.-++..... .| ....-...|.+.....++++|+..|+.+.+.+|-..+-+....++++-.++-.+-.-+.+.+
T Consensus       243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v  322 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV  322 (559)
T ss_pred             HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            77888877777776 45 56666778888888888888888888888888877776666777766666655555555667


Q ss_pred             HHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607        418 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV  497 (677)
Q Consensus       418 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  497 (677)
                      ..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+  ..+
T Consensus       323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRA  400 (559)
T KOG1155|consen  323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRA  400 (559)
T ss_pred             HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHH
Confidence            777777788888899999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607        498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  577 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~  577 (677)
                      |+.+|..|.        -++.+.-|+-+|+++....|+++..|..||.||.++++.++|+++|++++.  ....+..++.
T Consensus       401 WYGLGQaYe--------im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~  470 (559)
T KOG1155|consen  401 WYGLGQAYE--------IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALV  470 (559)
T ss_pred             HhhhhHHHH--------HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHH
Confidence            999999998        889999999999999999999999999999999999999999999999998  5666789999


Q ss_pred             HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc-------cCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS-------IDSSHGLSQNNLAVLEAREGHIERASTYLQ  650 (677)
Q Consensus       578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  650 (677)
                      .+|.+|.                   ++++..+|..+|++.++       ..|....+...|+.-+.+.+++++|..+..
T Consensus       471 ~LakLye-------------------~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~  531 (559)
T KOG1155|consen  471 RLAKLYE-------------------ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT  531 (559)
T ss_pred             HHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            9999999                   99999999999999998       455566777889999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHH
Q psy16607        651 AAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       651 ~al~~~p~~~~~~~~la~~~  670 (677)
                      +++.-++.-.++...+-.+.
T Consensus       532 ~~~~~~~e~eeak~LlReir  551 (559)
T KOG1155|consen  532 LVLKGETECEEAKALLREIR  551 (559)
T ss_pred             HHhcCCchHHHHHHHHHHHH
Confidence            99988777777665544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=9.5e-26  Score=254.76  Aligned_cols=474  Identities=11%  Similarity=-0.004  Sum_probs=338.2

Q ss_pred             HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCC
Q psy16607        122 YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAV  201 (677)
Q Consensus       122 ~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (677)
                      .|..+...|++++|+..|.++|+++|++..+++..++++...+..++.+..-+..         +.              
T Consensus        50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kA---------v~--------------  106 (987)
T PRK09782         50 KALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQ---------LK--------------  106 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------Hh--------------
Confidence            6677777799999999999999999999999999999998888777654432110         00              


Q ss_pred             CCCCCCCCCCCCCCCCccccc-CCCCCCCCCCchhhhhcCcccccccCCCcchhhhhhhhccc-----cc-ccCCCccch
Q psy16607        202 TAPALTSRPRTESGRPVSGVV-RPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTA-----SM-LSQPDGPFI  274 (677)
Q Consensus       202 ~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~  274 (677)
                            ..|.   ......+. .-+........+++.+.       ..|...  .....++..     .+ ..+......
T Consensus       107 ------ldP~---n~~~~~~La~i~~~~kA~~~ye~l~~-------~~P~n~--~~~~~la~~~~~~~~l~y~q~eqAl~  168 (987)
T PRK09782        107 ------RHPG---DARLERSLAAIPVEVKSVTTVEELLA-------QQKACD--AVPTLRCRSEVGQNALRLAQLPVARA  168 (987)
T ss_pred             ------cCcc---cHHHHHHHHHhccChhHHHHHHHHHH-------hCCCCh--hHHHHHHHHhhccchhhhhhHHHHHH
Confidence                  0000   00000000 00000000011222222       111111  011111111     01 111111111


Q ss_pred             hhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcc
Q psy16607        275 QVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFS-LGLIREAQQQFNSALNQ  353 (677)
Q Consensus       275 ~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  353 (677)
                      .+. .........+.+.......+|.+.|++++|+..+.++.+..|.+.... ..++.+|.. +++ ++++.+++..++ 
T Consensus       169 AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~-~~L~~ay~q~l~~-~~a~al~~~~lk-  244 (987)
T PRK09782        169 QLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAER-RQWFDVLLAGQLD-DRLLALQSQGIF-  244 (987)
T ss_pred             HHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhhCH-HHHHHHhchhcc-
Confidence            111 222222223555666668889999999999999999999997665544 788998888 477 888888665333 


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cH---------------------------------------
Q psy16607        354 FTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EV---------------------------------------  391 (677)
Q Consensus       354 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~---------------------------------------  391 (677)
                       .+..++..++..|.+.|+.++|...+++.-...+.   +.                                       
T Consensus       245 -~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (987)
T PRK09782        245 -TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL  323 (987)
T ss_pred             -cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH
Confidence             47889999999999999999999998885433221   11                                       


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607        392 -----------------------------------------------------TIMTEMARIFEGLNNMPMSVKYYKLIL  418 (677)
Q Consensus       392 -----------------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al  418 (677)
                                                                           ..+...+....+.|++++|...|++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~  403 (987)
T PRK09782        324 LKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRY  403 (987)
T ss_pred             HhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence                                                                 112233344455566666666666554


Q ss_pred             Hh-----------------------------------------------------------------CcC--CHHHHHHH
Q psy16607        419 KR-----------------------------------------------------------------DAT--CMEAIACI  431 (677)
Q Consensus       419 ~~-----------------------------------------------------------------~p~--~~~~~~~l  431 (677)
                      ..                                                                 .|.  +..+++.+
T Consensus       404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L  483 (987)
T PRK09782        404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL  483 (987)
T ss_pred             CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence            41                                                                 133  66677888


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc
Q psy16607        432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS  511 (677)
Q Consensus       432 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~  511 (677)
                      |.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..|+++....|.   ...+..+|.++.     
T Consensus       484 G~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~---~~a~~~la~all-----  553 (987)
T PRK09782        484 AKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS---NEDLLAAANTAQ-----  553 (987)
T ss_pred             HHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC---cHHHHHHHHHHH-----
Confidence            888876 788888888888888888654 3556677777889999999999888776555   445677888877     


Q ss_pred             ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607        512 TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF  591 (677)
Q Consensus       512 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~  591 (677)
                         ..|++++|+.+|+++++.+|.+...+..++..+...|++++|+..|+++++  .+|+ ...+.++|.++.       
T Consensus       554 ---~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~-~~a~~~LA~~l~-------  620 (987)
T PRK09782        554 ---AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPS-ANAYVARATIYR-------  620 (987)
T ss_pred             ---HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCC-HHHHHHHHHHHH-------
Confidence               889999999999999999998888887777777788999999999999998  7886 888999999988       


Q ss_pred             CcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                                  +.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus       621 ------------~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        621 ------------QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             ------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                        99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC
Q psy16607        672 LVSVI  676 (677)
Q Consensus       672 ~~G~i  676 (677)
                      .+|++
T Consensus       689 ~lGd~  693 (987)
T PRK09782        689 RLDDM  693 (987)
T ss_pred             HCCCH
Confidence            99985

>KOG0547|consensus

Probab=99.96  E-value=1.5e-26  Score=226.24  Aligned_cols=339  Identities=16%  Similarity=0.134  Sum_probs=294.0

Q ss_pred             HHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC
Q psy16607        294 LFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ  372 (677)
Q Consensus       294 l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~  372 (677)
                      -.|.-+++.|+|++|+++|.+++..+|.. +..+.+++-||...|++++.++.+.++++++| .+.++++.+..+..+|+
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK  198 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence            34555777899999999999999999654 55668999999999999999999999999999 89999999999999999


Q ss_pred             hHHHHHHHH------------------HHHHc--------------C---CCc---------------------------
Q psy16607        373 PIRAIDIGR------------------NALDC--------------Y---PNE---------------------------  390 (677)
Q Consensus       373 ~~~A~~~~~------------------~al~~--------------~---p~~---------------------------  390 (677)
                      +++|+.-..                  +.++.              .   |..                           
T Consensus       199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa  278 (606)
T KOG0547|consen  199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA  278 (606)
T ss_pred             HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence            887764321                  11110              0   000                           


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607        391 -----------------------------------------------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT  423 (677)
Q Consensus       391 -----------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  423 (677)
                                                                     ..++...|..+.-.|++..|.+.|+.++.++|.
T Consensus       279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~  358 (606)
T KOG0547|consen  279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA  358 (606)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence                                                           012445566677789999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q psy16607        424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  503 (677)
Q Consensus       424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  503 (677)
                      +...+..++.+|...++.++....|.++..++|.++++|+..|++++-++++++|+.-|++++.++|++  .-.+..++.
T Consensus       359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~  436 (606)
T KOG0547|consen  359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCC  436 (606)
T ss_pred             cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998  888889998


Q ss_pred             HHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc------hHHHHH
Q psy16607        504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN------AADVWY  577 (677)
Q Consensus       504 ~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~------~~~~~~  577 (677)
                      ...        +.++++++...|+.+.+..|+.++++...|.++..+++|++|++.|++++.  +.|.      ++..+.
T Consensus       437 a~Y--------r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  437 ALY--------RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLV  506 (606)
T ss_pred             HHH--------HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhh
Confidence            887        899999999999999999999999999999999999999999999999999  6776      333444


Q ss_pred             HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      ..+.+..                  .-.+++.+|+..++++++++|....++..||.+..++|+.++|+++|++++.+..
T Consensus       507 ~Ka~l~~------------------qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  507 HKALLVL------------------QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hhhHhhh------------------chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4443332                  2559999999999999999999999999999999999999999999999999876


Q ss_pred             CChHHH
Q psy16607        658 YLYETH  663 (677)
Q Consensus       658 ~~~~~~  663 (677)
                      ...+..
T Consensus       569 t~~E~~  574 (606)
T KOG0547|consen  569 TESEMV  574 (606)
T ss_pred             hHHHHH
Confidence            655543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.96  E-value=9.6e-26  Score=255.12  Aligned_cols=343  Identities=13%  Similarity=-0.003  Sum_probs=255.8

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      .|++++|++.+.++....| .....+..+|.++...|++++|+..|+++++..| +..++..++.++...|++++|+..+
T Consensus        28 ~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l  106 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA  106 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5777777777777776553 3333346777777777777777777777777776 6777777777777777777777777


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHH---------------
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL---------------  445 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---------------  445 (677)
                      +++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.++...+..++|+               
T Consensus       107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~  185 (765)
T PRK10049        107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD  185 (765)
T ss_pred             HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence            777777777777 7777777777777777777777777777777777777777766666655444               


Q ss_pred             -------------------------------HHHHHHHHcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        446 -------------------------------LFYRRLLQMGLYNAEL-------FNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       446 -------------------------------~~~~~al~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                                                     +.++.+++..|.++..       .......+...|++++|+..|+++++
T Consensus       186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~  265 (765)
T PRK10049        186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA  265 (765)
T ss_pred             HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence                                           4444444432222211       11112234567888888888888887


Q ss_pred             hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607        488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERA  563 (677)
Q Consensus       488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a  563 (677)
                      ..+.. -..+...++.++.        ..|++++|+..|++++..+|.+    ......++.++...|++++|+..++++
T Consensus       266 ~~~~~-P~~a~~~la~~yl--------~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~  336 (765)
T PRK10049        266 EGQII-PPWAQRWVASAYL--------KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT  336 (765)
T ss_pred             cCCCC-CHHHHHHHHHHHH--------hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            75431 0223333577776        8888888888888888877765    355677777888888888888888888


Q ss_pred             HHHhhcc-------------c--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607        564 LSLALNE-------------N--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS  628 (677)
Q Consensus       564 l~~~~~p-------------~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~  628 (677)
                      ..  ..|             +  ...++..++.++.                   ..|++++|+..+++++...|+++.+
T Consensus       337 ~~--~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~-------------------~~g~~~eA~~~l~~al~~~P~n~~l  395 (765)
T PRK10049        337 IN--NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK-------------------YSNDLPQAEMRARELAYNAPGNQGL  395 (765)
T ss_pred             hh--cCCceEeecCCCCCCCCchHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            87  444             2  2345667777777                   9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       629 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      +..+|.++...|++++|+..++++++++|++..+++.+|.++...|++
T Consensus       396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~  443 (765)
T PRK10049        396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW  443 (765)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999988874

>KOG1126|consensus

Probab=99.96  E-value=8.9e-27  Score=237.41  Aligned_cols=298  Identities=15%  Similarity=0.155  Sum_probs=267.0

Q ss_pred             HHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHH
Q psy16607        335 FSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY  413 (677)
Q Consensus       335 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  413 (677)
                      ..+-+..+|+..|.+.-...+ ...++..+|..|+.+++|++|..+|+.+-++.|-..+..-....++.++.+--+--.+
T Consensus       330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L  409 (638)
T KOG1126|consen  330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL  409 (638)
T ss_pred             HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence            344567889999999544444 5588889999999999999999999999999987776666666777777766665566


Q ss_pred             HHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc
Q psy16607        414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN  493 (677)
Q Consensus       414 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  493 (677)
                      -+..+..+|..++.|..+|.+|..+++++.|+++|+++++++|....+|..+|.=+.....++.|..+|++|+..+|.+ 
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-  488 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-  488 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-
Confidence            6778888999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607        494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                       ..+|+.+|.+|.        ++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.  .+|.++
T Consensus       489 -YnAwYGlG~vy~--------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~  557 (638)
T KOG1126|consen  489 -YNAWYGLGTVYL--------KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNP  557 (638)
T ss_pred             -hHHHHhhhhhee--------ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCc
Confidence             999999999998        999999999999999999999999999999999999999999999999999  899999


Q ss_pred             HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA  653 (677)
Q Consensus       574 ~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  653 (677)
                      -..+..+.++.                   .++++++|+..+++..++.|+...+++.+|.+|.+.|+.+.|+..|.=|.
T Consensus       558 l~~~~~~~il~-------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  558 LCKYHRASILF-------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL  618 (638)
T ss_pred             hhHHHHHHHHH-------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence            99999999988                   99999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCChHHH
Q psy16607        654 ASSPYLYETH  663 (677)
Q Consensus       654 ~~~p~~~~~~  663 (677)
                      +++|.-....
T Consensus       619 ~ldpkg~~i~  628 (638)
T KOG1126|consen  619 DLDPKGAQIQ  628 (638)
T ss_pred             cCCCccchhh
Confidence            9999876643

>KOG1155|consensus

Probab=99.95  E-value=1.7e-25  Score=217.62  Aligned_cols=325  Identities=16%  Similarity=0.202  Sum_probs=283.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHH-----------------------------HHc
Q psy16607        321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVY-----------------------------IRL  370 (677)
Q Consensus       321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~-----------------------------~~~  370 (677)
                      ..|.+.++..|.++...|....|+..|..++...| ++.+|..++.+.                             ...
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el  240 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL  240 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence            45677778999999999999999999999999888 777776665543                             223


Q ss_pred             CChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607        371 DQPIRAIDIGRNALDC-YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  449 (677)
Q Consensus       371 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  449 (677)
                      .+.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-..+-.-...++++-.++-.+-.-+.+
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~  320 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ  320 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence            3455666666666666 677777788888888888999999999999988888777766667777776666555556667


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH
Q psy16607        450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL  529 (677)
Q Consensus       450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a  529 (677)
                      .+..++...++....+|..|...++.++|+.+|+++++++|..  ..+|..+|+-+.        .+++...|++.|+++
T Consensus       321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~--~~aWTLmGHEyv--------EmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY--LSAWTLMGHEYV--------EMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch--hHHHHHhhHHHH--------HhcccHHHHHHHHHH
Confidence            7778888888889999999999999999999999999999998  999999999999        999999999999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHH
Q psy16607        530 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR  609 (677)
Q Consensus       530 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~  609 (677)
                      ++++|.+..+|+.+|+.|.-++.+.-|+-+|++|..  ..|++...|..||.||.                   ++++.+
T Consensus       391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~-------------------kl~~~~  449 (559)
T KOG1155|consen  391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYE-------------------KLNRLE  449 (559)
T ss_pred             HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHH-------------------HhccHH
Confidence            999999999999999999999999999999999999  89999999999999999                   999999


Q ss_pred             HHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHhcCCC
Q psy16607        610 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA-------SSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       610 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      +|+++|++++.....+..+++.||.+|.++++.++|..+|++.++       ..|+-..+..-|+.-++++++.
T Consensus       450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~  523 (559)
T KOG1155|consen  450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF  523 (559)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence            999999999999988889999999999999999999999999998       4566667777788877777664

>KOG0547|consensus

Probab=99.95  E-value=3.8e-26  Score=223.46  Aligned_cols=318  Identities=17%  Similarity=0.167  Sum_probs=264.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      -..|.-+++.|+|++|+++|.+++...|+ +..|.+++-||...|+|++.++...++++++|+...+++..+.++..+|+
T Consensus       119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK  198 (606)
T ss_pred             HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence            46788999999999999999999999995 88899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHH------------------HHHHh--------------Cc--------------------------------
Q psy16607        407 MPMSVKYYK------------------LILKR--------------DA--------------------------------  422 (677)
Q Consensus       407 ~~~A~~~~~------------------~al~~--------------~p--------------------------------  422 (677)
                      +.+|+....                  +.++.              .|                                
T Consensus       199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa  278 (606)
T KOG0547|consen  199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA  278 (606)
T ss_pred             HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence            998875432                  11111              00                                


Q ss_pred             ------------------------------------CC---------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        423 ------------------------------------TC---------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       423 ------------------------------------~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                                                          .+         ..++...|..++..|++-.|...++.++.++|.
T Consensus       279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~  358 (606)
T KOG0547|consen  279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA  358 (606)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence                                                11         344555566677777788888888888888887


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      ....+..++.+|....+.++-...|.++..++|.+  +++|+..|.++.        -++++++|+..|++++.++|++.
T Consensus       359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n--~dvYyHRgQm~f--------lL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN--PDVYYHRGQMRF--------LLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC--CchhHhHHHHHH--------HHHHHHHHHHHHHHHhhcChhhh
Confidence            77778888888888888888888888888888887  888888888776        67788888888888888888888


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL  617 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~  617 (677)
                      -.+..++.+.+++++++++...|+.++.  .-|+.++++...+.++.                   .++++++|++.|++
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLt-------------------DqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILT-------------------DQQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHh-------------------hHHhHHHHHHHHHH
Confidence            8888888888888888888888888887  67888888888888777                   99999999999999


Q ss_pred             HHccCCC------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        618 ALSIDSS------HGLSQNNLAVLEA-REGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       618 al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      ++++.|.      ++..+.+.|.+.. ..+++..|+.++++|++++|....++..||.+..+.|+|
T Consensus       488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence            9999998      6666666665443 458999999999999999999999999999999999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=1.8e-24  Score=244.84  Aligned_cols=343  Identities=10%  Similarity=-0.052  Sum_probs=286.1

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR  369 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~  369 (677)
                      +...++.++...|++++|+..++++++..|.+...+ ..++.++...|++++|+..++++++..| +.. +..+|.++..
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~  128 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ-RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR  128 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence            345566667778999999999999999986554444 7899999999999999999999999998 777 9999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHH-----------------------------------
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY-----------------------------------  414 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-----------------------------------  414 (677)
                      .|++++|+..++++++..|++..++..++.++...+..++|+..+                                   
T Consensus       129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r  208 (765)
T PRK10049        129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER  208 (765)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence            999999999999999999999999998998887777766555444                                   


Q ss_pred             -----------HHHHHhCcCCHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCH
Q psy16607        415 -----------KLILKRDATCME-------AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQY  475 (677)
Q Consensus       415 -----------~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~  475 (677)
                                 +++++..|.++.       +.......+...|++++|+..|+++++..+..+ .+...+|.+|...|++
T Consensus       209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~  288 (765)
T PRK10049        209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQP  288 (765)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCc
Confidence                       444433222211       112212234677999999999999998864432 3444469999999999


Q ss_pred             HHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC---------------cHH
Q psy16607        476 DMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---------------NAE  538 (677)
Q Consensus       476 ~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~  538 (677)
                      ++|+..|++++...|.+  ........++.++.        ..|++++|+..++++....|.               ...
T Consensus       289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~--------~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~  360 (765)
T PRK10049        289 EKAQSILTELFYHPETIADLSDEELADLFYSLL--------ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ  360 (765)
T ss_pred             HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH--------hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence            99999999999887654  11345666777776        899999999999999988763               235


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      ++..++.++...|++++|+..+++++.  ..|++..++..++.++.                   ..|++++|+..++++
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~-------------------~~g~~~~A~~~l~~a  419 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ-------------------ARGWPRAAENELKKA  419 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHH
Confidence            778899999999999999999999999  89999999999999999                   999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                      +.++|++..+++.+|.++...|++++|...++++++..|+++.+..
T Consensus       420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999999999999999999999999986653

>KOG1126|consensus

Probab=99.95  E-value=1.7e-26  Score=235.30  Aligned_cols=295  Identities=15%  Similarity=0.212  Sum_probs=272.3

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDI  379 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~  379 (677)
                      ..-+.++|+..|.+.-... .+..|.+..+|+.|+.+++|++|.++|+.+-+..| ..+..-....+++.+.+--+--.+
T Consensus       331 s~y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L  409 (638)
T KOG1126|consen  331 SQYNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL  409 (638)
T ss_pred             HHHHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence            3457789999999955555 66668889999999999999999999999999999 555555566666666665555566


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH
Q psy16607        380 GRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA  459 (677)
Q Consensus       380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  459 (677)
                      .+..+..+|+.++.|..+|.+|..+++++.|+++|+++++++|...-++..+|.-+.....++.|..+|+.++..+|.+-
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL  539 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  539 (677)
                      .+|+.+|.+|.++++++.|.-.|++|++++|.+  ......+|.++.        +.|+.++|+..|++|+.++|.++-.
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~--------~~k~~d~AL~~~~~A~~ld~kn~l~  559 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQH--------QLKRKDKALQLYEKAIHLDPKNPLC  559 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHH--------HhhhhhHHHHHHHHHHhcCCCCchh
Confidence            999999999999999999999999999999999  888899999998        9999999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      .+..|.+++..+++++|+..+++..+  .-|+...+++.+|.+|.                   ++|+.+.|+..|.-|.
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k-------------------~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK-------------------RLGNTDLALLHFSWAL  618 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH-------------------HHccchHHHHhhHHHh
Confidence            99999999999999999999999999  88999999999999999                   9999999999999999


Q ss_pred             ccCCCChH
Q psy16607        620 SIDSSHGL  627 (677)
Q Consensus       620 ~~~p~~~~  627 (677)
                      .++|.-..
T Consensus       619 ~ldpkg~~  626 (638)
T KOG1126|consen  619 DLDPKGAQ  626 (638)
T ss_pred             cCCCccch
Confidence            99997554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1.7e-23  Score=221.09  Aligned_cols=295  Identities=14%  Similarity=0.069  Sum_probs=235.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE----VTIMTEMARIFE  402 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~  402 (677)
                      +.+|..+...|++++|+..|+++++.+| +..++..+|.++...|++++|+..+++++...+..    ..++..+|.+|.
T Consensus        39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            5667788888888888888888888887 67788888888888888888888888887753322    246778888888


Q ss_pred             HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHH
Q psy16607        403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDM  477 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~  477 (677)
                      ..|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.     ..+..+|.++...|++++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            888888888888888888888888888888888888888888888888888776543     245678888888888888


Q ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhccCHHHH
Q psy16607        478 VVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDMV  556 (677)
Q Consensus       478 A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A  556 (677)
                      |+..|+++++..|+.  ..++..++.++.        ..|++++|+..+++++..+|.+ ...+..++.+|...|++++|
T Consensus       199 A~~~~~~al~~~p~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        199 ARALLKKALAADPQC--VRASILLGDLAL--------AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             HHHHHHHHHhHCcCC--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888876  778888888887        8888888998888888887765 45677888889999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q psy16607        557 VTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  636 (677)
Q Consensus       557 ~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  636 (677)
                      +..++++++  ..|+... +..++.++.                   ..|++++|+..++++++..|++......++..+
T Consensus       269 ~~~l~~~~~--~~p~~~~-~~~la~~~~-------------------~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        269 LEFLRRALE--EYPGADL-LLALAQLLE-------------------EQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHH--hCCCchH-HHHHHHHHH-------------------HhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            999999888  6676544 377888887                   899999999999999998888775554444333


Q ss_pred             HH--cCCHHHHHHHHHHHHH
Q psy16607        637 AR--EGHIERASTYLQAAAA  654 (677)
Q Consensus       637 ~~--~g~~~~A~~~~~~al~  654 (677)
                      ..  .|+.++|+..+++.++
T Consensus       327 ~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hccCCccchhHHHHHHHHHH
Confidence            22  4578888887777664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=6.5e-23  Score=216.62  Aligned_cols=284  Identities=15%  Similarity=0.137  Sum_probs=252.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACI  431 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  431 (677)
                      .....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345567778889999999999999999999999999999999999999999999999999998854332    3568899


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc---hHHHHHHHHHHHHHh
Q psy16607        432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN---AADVWYNISHVAILN  508 (677)
Q Consensus       432 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~~~l~  508 (677)
                      |.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..+++++...|.+.   ....+..++.++.  
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--  191 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL--  191 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH--
Confidence            99999999999999999999999999999999999999999999999999999999887651   1234567788877  


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHhh
Q psy16607        509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIITE  587 (677)
Q Consensus       509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~  587 (677)
                            ..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.  .+|.+ ..++..++.+|.   
T Consensus       192 ------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~---  260 (389)
T PRK11788        192 ------ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE--QDPEYLSEVLPKLMECYQ---  260 (389)
T ss_pred             ------hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HChhhHHHHHHHHHHHHH---
Confidence                  899999999999999999999999999999999999999999999999998  66765 466788899988   


Q ss_pred             cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                                      ..|++++|+..++++++..|+.. .+..++.++.+.|++++|+..++++++..|++......++
T Consensus       261 ----------------~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~  323 (389)
T PRK11788        261 ----------------ALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD  323 (389)
T ss_pred             ----------------HcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence                            99999999999999999999765 4589999999999999999999999999999886664444


Q ss_pred             HH
Q psy16607        668 VI  669 (677)
Q Consensus       668 ~~  669 (677)
                      ..
T Consensus       324 ~~  325 (389)
T PRK11788        324 YH  325 (389)
T ss_pred             Hh
Confidence            33

>KOG0548|consensus

Probab=99.92  E-value=4.3e-22  Score=198.52  Aligned_cols=351  Identities=14%  Similarity=0.092  Sum_probs=286.4

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI  374 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~  374 (677)
                      |...+..|+|+.|+.+|.+++.++|.+. ..+.+..-+|..+|+|++|++--.+.+++.| -+..|..+|..+.-+|+|+
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~p~nh-vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLSPTNH-VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccCCCcc-chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence            3345668999999999999999998754 4447899999999999999999999999999 6789999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC------------------------hhHHHHHHHHHHHhCc--------
Q psy16607        375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNN------------------------MPMSVKYYKLILKRDA--------  422 (677)
Q Consensus       375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~al~~~p--------  422 (677)
                      +|+..|.+.++.+|++...+..++.++...-.                        .+.+.....+.+..+|        
T Consensus        88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~  167 (539)
T KOG0548|consen   88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN  167 (539)
T ss_pred             HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence            99999999999999999998888887732200                        0111111111111111        


Q ss_pred             ---------------------------------------------C---------CHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607        423 ---------------------------------------------T---------CMEAIACIGVNHFYNDQPEVALLFY  448 (677)
Q Consensus       423 ---------------------------------------------~---------~~~~~~~la~~~~~~g~~~~A~~~~  448 (677)
                                                                   +         -......+|.......++..|++.|
T Consensus       168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y  247 (539)
T KOG0548|consen  168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY  247 (539)
T ss_pred             cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence                                                         0         0123457788888999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607        449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR  528 (677)
Q Consensus       449 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~  528 (677)
                      ..++.++ .+...+.+.+.+|+..|.+.+.+....++++.....  ..-+..++.+.. .....+.+.++++.|+.+|.+
T Consensus       248 ~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~--rad~klIak~~~-r~g~a~~k~~~~~~ai~~~~k  323 (539)
T KOG0548|consen  248 AKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL--RADYKLIAKALA-RLGNAYTKREDYEGAIKYYQK  323 (539)
T ss_pred             HHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH--HHHHHHHHHHHH-HhhhhhhhHHhHHHHHHHHHH
Confidence            9999999 888999999999999999999999999988876553  222222333322 112234488999999999999


Q ss_pred             HHHcCC--------------------------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607        529 LLQMGL--------------------------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       529 al~~~p--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~  582 (677)
                      ++....                          .-..-...-|..++..|+|..|+..|.+++.  .+|+++..+.+.+.|
T Consensus       324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac  401 (539)
T KOG0548|consen  324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAAC  401 (539)
T ss_pred             HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHH
Confidence            884332                          2223344568899999999999999999999  899999999999999


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                      |.                   ++|.+..|+...+.+++++|+....|...|.++..+.+|++|.+.|+++++.+|++.++
T Consensus       402 ~~-------------------kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  402 YL-------------------KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HH-------------------HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99                   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy16607        663 HYNQAVISNL  672 (677)
Q Consensus       663 ~~~la~~~~~  672 (677)
                      .-.+..|...
T Consensus       463 ~~~~~rc~~a  472 (539)
T KOG0548|consen  463 IDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>KOG1173|consensus

Probab=99.92  E-value=4.7e-22  Score=198.79  Aligned_cols=286  Identities=10%  Similarity=0.071  Sum_probs=260.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      +.+.+...+..++..+++.+..+..+..++.+|-+...+-....++..+|+..+-...-.+.++..|+.+..|+.+|..|
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY  322 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence            56788889999999999999999999999999999888765555999999999988888999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY  515 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~  515 (677)
                      ...|++.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|..  ..-...+|.-+.        .
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--hlP~LYlgmey~--------~  392 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--HLPSLYLGMEYM--------R  392 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--cchHHHHHHHHH--------H
Confidence            999999999999999999999999999999999999999999999999999999987  555666777777        8


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc--cc---hHHHHHHHHHHHHHhhcCC
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN--EN---AADVWYNISHVAIITECSP  590 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--p~---~~~~~~~l~~~~~~~~~~p  590 (677)
                      .++++-|.++|.+++.+.|.++-.+..+|.+.+..+.|.+|..+|+.++.....  +.   -...+.++|.++.      
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R------  466 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR------  466 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH------
Confidence            899999999999999999999999999999999999999999999999953211  11   2245889999999      


Q ss_pred             CCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                                   +++++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++.-+--.|+.+.
T Consensus       467 -------------kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  467 -------------KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             -------------HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence                         9999999999999999999999999999999999999999999999999999999976655555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.92  E-value=5.8e-21  Score=211.85  Aligned_cols=356  Identities=12%  Similarity=0.016  Sum_probs=256.8

Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc
Q psy16607        292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL  370 (677)
Q Consensus       292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~  370 (677)
                      ...-+.+.++.|++..|+..|+++++..|.....++ .++.++...|+.++|+.++++++...+ ....+..+|.++...
T Consensus        37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE  115 (822)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            344556678899999999999999999976554553 778888888999999999999994333 566667778899999


Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR  450 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  450 (677)
                      |++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+|++.+++
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999985554 5566666667888779999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHH------------------------------------------------HH
Q psy16607        451 LLQMGLYNAELFNNLALCCFYSQQYDMVVT------------------------------------------------CF  482 (677)
Q Consensus       451 al~~~~~~~~~~~~la~~~~~~g~~~~A~~------------------------------------------------~~  482 (677)
                      +++.+|++..++..+..++...|-...|.+                                                -+
T Consensus       195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~  274 (822)
T PRK14574        195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY  274 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence            999999998887776666665554433332                                                22


Q ss_pred             HHHHhh---hccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHH
Q psy16607        483 ERALSL---ALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMV  556 (677)
Q Consensus       483 ~~al~~---~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A  556 (677)
                      ++.+..   .|..  ....+..-.-.++        ...+++.+++..|+.+.... +--.-+....|..|...++.++|
T Consensus       275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL--------~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        275 QNLLTRWGKDPEAQADYQRARIDRLGAL--------LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHhhccCCCccchHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence            233331   1211  0001111111111        14445555555554444222 22222444444444444444555


Q ss_pred             HHHHHHH----------------------------------------HHHh-------------hccchHHHHHHHHHHH
Q psy16607        557 VTCFERA----------------------------------------LSLA-------------LNENAADVWYNISHVA  583 (677)
Q Consensus       557 ~~~~~~a----------------------------------------l~~~-------------~~p~~~~~~~~l~~~~  583 (677)
                      +.+|+++                                        .+..             .+|+..++...++.++
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            4444444                                        4310             1112223333344444


Q ss_pred             HHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607        584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  663 (677)
Q Consensus       584 ~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  663 (677)
                                         ...|++.+|.+.+++.+...|.++.++..+|.++...|++.+|...++.+..++|++..+.
T Consensus       427 -------------------~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~  487 (822)
T PRK14574        427 -------------------VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE  487 (822)
T ss_pred             -------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence                               4999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy16607        664 YNQAVISNLVSVI  676 (677)
Q Consensus       664 ~~la~~~~~~G~i  676 (677)
                      +.++.++..+|++
T Consensus       488 ~~~~~~al~l~e~  500 (822)
T PRK14574        488 RAQAETAMALQEW  500 (822)
T ss_pred             HHHHHHHHhhhhH
Confidence            9999999988875

>KOG0624|consensus

Probab=99.92  E-value=1.1e-21  Score=184.13  Aligned_cols=316  Identities=15%  Similarity=0.107  Sum_probs=270.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI  400 (677)
Q Consensus       322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  400 (677)
                      .+..-++.+|..++..|++.+|+..|..+++.+| +-.+++..|.+|+.+|+..-|+.-+.+++++-|+-..+....|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            3445557899999999999999999999999999 788999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhCcCC---HHHH------------HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607        401 FEGLNNMPMSVKYYKLILKRDATC---MEAI------------ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL  465 (677)
Q Consensus       401 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  465 (677)
                      +.++|++++|...|+.++..+|++   .++.            ......++..|+...|++.....+++.|=+...+...
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R  195 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR  195 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence            999999999999999999998854   2222            2234455667899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH--
Q psy16607        466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL--  543 (677)
Q Consensus       466 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--  543 (677)
                      +.||...|+...|+.-++.+-++..++  .+.++.++.++.        ..|+.+.++...+++++++|++-.++-..  
T Consensus       196 akc~i~~~e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y--------~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk  265 (504)
T KOG0624|consen  196 AKCYIAEGEPKKAIHDLKQASKLSQDN--TEGHYKISQLLY--------TVGDAENSLKEIRECLKLDPDHKLCFPFYKK  265 (504)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhccccc--hHHHHHHHHHHH--------hhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence            999999999999999999999998888  899999999988        89999999999999999999987654321  


Q ss_pred             ----------HHHHHhccCHHHHHHHHHHHHHHhhccchHH----HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHH
Q psy16607        544 ----------ALCCFYSQQYDMVVTCFERALSLALNENAAD----VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR  609 (677)
Q Consensus       544 ----------a~~~~~~g~~~~A~~~~~~al~~~~~p~~~~----~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~  609 (677)
                                +......++|.++++..++.++  .+|....    .+..+..|+.                   .-|++.
T Consensus       266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~-------------------~d~~~~  324 (504)
T KOG0624|consen  266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYR-------------------EDEQFG  324 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeeccc-------------------ccCCHH
Confidence                      2334566788888888888888  6776443    3445566776                   899999


Q ss_pred             HHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607        610 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  668 (677)
Q Consensus       610 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  668 (677)
                      +|+..+.+++.++|++..++...+.+|.....|+.|+..|++|.+.++++..+.-.+-.
T Consensus       325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~  383 (504)
T KOG0624|consen  325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER  383 (504)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999887765543

>KOG1173|consensus

Probab=99.91  E-value=6.1e-21  Score=190.90  Aligned_cols=280  Identities=14%  Similarity=0.136  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607        326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL  404 (677)
Q Consensus       326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  404 (677)
                      .....+..++..++|.+..+.++..++.+| +...+-....++...|+..+-..+-.+.++.+|+.+..|+..|..|...
T Consensus       246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i  325 (611)
T KOG1173|consen  246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI  325 (611)
T ss_pred             HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence            336778888888888888888888888888 5555544333888888888888888888888898888899999888888


Q ss_pred             CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER  484 (677)
Q Consensus       405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  484 (677)
                      |++.+|..+|.++..++|....+|...|..+...|..++|+..|..+-++.|........+|.-|.+.++++-|.++|.+
T Consensus       326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999999999999988889999999998889999999999998888888888888888888888999999999999


Q ss_pred             HHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc----CCC---cHHHHHHHHHHHHhccCHHHHH
Q psy16607        485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM----GLY---NAELFNNLALCCFYSQQYDMVV  557 (677)
Q Consensus       485 al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~  557 (677)
                      |+.+.|.+  +-++..+|.+..        ..+.+.+|..+|+.++..    .+.   -...+.+||.++.+.+++++|+
T Consensus       406 A~ai~P~D--plv~~Elgvvay--------~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  406 ALAIAPSD--PLVLHELGVVAY--------TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHhcCCCc--chhhhhhhheee--------hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999888  888888888876        788889999988888832    121   2356899999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q psy16607        558 TCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  636 (677)
Q Consensus       558 ~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  636 (677)
                      .+|++++.  ..|.++.++..+|.+|.                   .+|+++.|+++|.+++.+.|++..+-..|+.+.
T Consensus       476 ~~~q~aL~--l~~k~~~~~asig~iy~-------------------llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  476 DYYQKALL--LSPKDASTHASIGYIYH-------------------LLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHH--cCCCchhHHHHHHHHHH-------------------HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            99999999  89999999999999999                   999999999999999999999976665555443

>KOG2003|consensus

Probab=99.91  E-value=4.1e-22  Score=193.02  Aligned_cols=369  Identities=14%  Similarity=0.111  Sum_probs=270.8

Q ss_pred             HHHHHHhcccCHHHHHHHHHHHHhhCcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy16607        294 LFEYLYHHENDVASAMDLAVESTKACEFR----DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIR  369 (677)
Q Consensus       294 l~~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~  369 (677)
                      -+|.++++..+|.+|+++|+-++..-|.-    ..-++.++|..+.+.|+|++|+..|+..++..|+..+-+++..|++.
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~  321 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFA  321 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhhee
Confidence            35777888899999999999999887622    22344678888899999999999999999999988888999999999


Q ss_pred             cCChHHHHHHHHHHHHcC--------------CCcH--------------------------------------------
Q psy16607        370 LDQPIRAIDIGRNALDCY--------------PNEV--------------------------------------------  391 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~--------------p~~~--------------------------------------------  391 (677)
                      .|+-++-.+.|.+++.+.              |++.                                            
T Consensus       322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g  401 (840)
T KOG2003|consen  322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG  401 (840)
T ss_pred             cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence            999988888888887542              1110                                            


Q ss_pred             ------------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-HHHHHHHHHHHHhC--CChHHHHHHHHH
Q psy16607        392 ------------------TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHFYN--DQPEVALLFYRR  450 (677)
Q Consensus       392 ------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~  450 (677)
                                        +.-.+.+..+.+.|+++.|++.++-.-+.+... ..+-.+|..+++.+  .++..|..+.+.
T Consensus       402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~  481 (840)
T KOG2003|consen  402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI  481 (840)
T ss_pred             cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence                              001245566788899999988876554444332 23344555555543  356677777777


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607        451 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL  530 (677)
Q Consensus       451 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al  530 (677)
                      ++.++..++.+..+.|.+-+..|++++|.+.|+.++..+...  ..+++++|..+.        .+|+.++|+.+|-+.-
T Consensus       482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc--~ealfniglt~e--------~~~~ldeald~f~klh  551 (840)
T KOG2003|consen  482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC--TEALFNIGLTAE--------ALGNLDEALDCFLKLH  551 (840)
T ss_pred             HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH--HHHHHHhcccHH--------HhcCHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777776666  777777777776        7777777777777777


Q ss_pred             HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCC----------CCcccchh--
Q psy16607        531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSP----------FSFSTHTS--  598 (677)
Q Consensus       531 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p----------~~~~~~~~--  598 (677)
                      .+--++.++++.++.+|..+.+..+|++++.++..  .-|+++.++..++.+|-..+...          ...+.+..  
T Consensus       552 ~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i  629 (840)
T KOG2003|consen  552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI  629 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence            66667777777777777777777777777777777  66777777777777776443311          11121111  


Q ss_pred             hh---HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        599 YL---FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       599 ~~---~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      -|   -|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-|..+.-.+|
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            12   22366667899999999999999888888888999999999999999999999999999888777776655544

>KOG2076|consensus

Probab=99.91  E-value=8e-21  Score=199.80  Aligned_cols=345  Identities=17%  Similarity=0.130  Sum_probs=281.1

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      .|++++|..++.++++++|.....+ +.+|.+|..+|+.+++...+-.+-.++| +.+.|..++....++|++.+|+-+|
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay-~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy  230 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAY-YTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY  230 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhH-HHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            5999999999999999997665555 7999999999999999999999999999 8899999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQM-  454 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  454 (677)
                      .++++.+|.+....+..+.+|.+.|+...|...|.+++...|..     .......+..+...++-+.|++.++.++.. 
T Consensus       231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~  310 (895)
T KOG2076|consen  231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE  310 (895)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999932     223345577788888889999999999983 


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcc----------------------c--chHHH-HHHHHHHHH
Q psy16607        455 -GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL--ALN----------------------E--NAADV-WYNISHVAI  506 (677)
Q Consensus       455 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~----------------------~--~~~~~-~~~l~~~~~  506 (677)
                       +....+.+..++.++.....++.|..........  .++                      .  ....+ ...++.+..
T Consensus       311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L  390 (895)
T KOG2076|consen  311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL  390 (895)
T ss_pred             cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence             3334456778899999999999999887765541  000                      0  00112 333343333


Q ss_pred             HhhhcccccCCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHH
Q psy16607        507 LNALSTSVYNDQPEVALLFYRRLLQMGL-YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAI  584 (677)
Q Consensus       507 l~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~  584 (677)
                              +.++..+++..+..--...+ ++++.++.++.+|...|++.+|+.+|..+..  ..+ ++..+|+.+|.||.
T Consensus       391 --------~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  391 --------KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWYKLARCYM  460 (895)
T ss_pred             --------cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhHHHHHHHH
Confidence                    55566666655543332223 4578999999999999999999999999987  333 45679999999999


Q ss_pred             HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy16607        585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL-----  659 (677)
Q Consensus       585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  659 (677)
                                         .+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.++....-++.+     
T Consensus       461 -------------------~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a  521 (895)
T KOG2076|consen  461 -------------------ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA  521 (895)
T ss_pred             -------------------HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence                               99999999999999999999999999999999999999999999999977433222     


Q ss_pred             ----hHHHHHHHHHHHhcCCC
Q psy16607        660 ----YETHYNQAVISNLVSVI  676 (677)
Q Consensus       660 ----~~~~~~la~~~~~~G~i  676 (677)
                          .........+++.+|++
T Consensus       522 ~~~e~ri~~~r~d~l~~~gk~  542 (895)
T KOG2076|consen  522 WEPERRILAHRCDILFQVGKR  542 (895)
T ss_pred             ccHHHHHHHHHHHHHHHhhhH
Confidence                23456677777777753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=1.4e-19  Score=201.03  Aligned_cols=338  Identities=11%  Similarity=-0.028  Sum_probs=274.9

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHH
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIR  375 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~  375 (677)
                      +.++...|++++|+++|+++++..|.+ ...+..++..+...++.++|+..++++...+|....+..++.++...++..+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~  187 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence            456677899999999999999999766 4444678899999999999999999999999964445666777766788878


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH--------------------------------------------
Q psy16607        376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSV--------------------------------------------  411 (677)
Q Consensus       376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--------------------------------------------  411 (677)
                      |+..++++++.+|++.+++..+..++...|-...|.                                            
T Consensus       188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~  267 (822)
T PRK14574        188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA  267 (822)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            999999999999999988877777776666544443                                            


Q ss_pred             ----HHHHHHHHh---CcCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Q psy16607        412 ----KYYKLILKR---DATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVV  479 (677)
Q Consensus       412 ----~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~  479 (677)
                          ..++..+..   .|..    ..+....-.++...|++.+++..|+.+.... +-...+....|..|...+++++|+
T Consensus       268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~  347 (822)
T PRK14574        268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA  347 (822)
T ss_pred             HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence                333333432   2221    2233344556778899999999999887655 335668888999999999999999


Q ss_pred             HHHHHHHhhhcc----cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC---------------CcHHHH
Q psy16607        480 TCFERALSLALN----ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL---------------YNAELF  540 (677)
Q Consensus       480 ~~~~~al~~~p~----~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~  540 (677)
                      .+|+.++...+.    +........|...++        ..+++++|..++++..+..|               +-....
T Consensus       348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l--------d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~  419 (822)
T PRK14574        348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLN--------ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ  419 (822)
T ss_pred             HHHHHHhhccccccCCCcchHHHHHHHHHHH--------hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence            999999886532    101333455666666        99999999999999997544               234677


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      ..++.++...|++.+|.+.+++.+.  ..|.+..++..++.++.                   ..|.+.+|...++.+..
T Consensus       420 ~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~-------------------~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        420 TLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYL-------------------ARDLPRKAEQELKAVES  478 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHhh
Confidence            7889999999999999999999998  88999999999999999                   99999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607        621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  663 (677)
Q Consensus       621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  663 (677)
                      ++|++..+...+|.++..+|++.+|....+++++..|++....
T Consensus       479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            9999999999999999999999999999999999999998543

>KOG2003|consensus

Probab=99.90  E-value=7.5e-22  Score=191.23  Aligned_cols=339  Identities=17%  Similarity=0.125  Sum_probs=245.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16607        325 WWKVQLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA  398 (677)
Q Consensus       325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  398 (677)
                      ....++|.++++..+|.+|+++|+-++..-|      ...++.++|..+.+.|+|+.|+..|+.+++..|+ ..+-+++.
T Consensus       238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn-~~a~~nl~  316 (840)
T KOG2003|consen  238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN-FIAALNLI  316 (840)
T ss_pred             eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc-HHhhhhhh
Confidence            3345567777777777777777777777655      3456667777777777888888888777777773 44445566


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhC--------------cCC----------------------------------------
Q psy16607        399 RIFEGLNNMPMSVKYYKLILKRD--------------ATC----------------------------------------  424 (677)
Q Consensus       399 ~~~~~~g~~~~A~~~~~~al~~~--------------p~~----------------------------------------  424 (677)
                      .+++..|+-++-.+.|.+.+.+.              |++                                        
T Consensus       317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~  396 (840)
T KOG2003|consen  317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP  396 (840)
T ss_pred             hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence            66777777777777777766541              100                                        


Q ss_pred             ----------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH--cCCHHHHH
Q psy16607        425 ----------------------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFY--SQQYDMVV  479 (677)
Q Consensus       425 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~--~g~~~~A~  479 (677)
                                            .+.-.+.+.-+.+.|+++.|+++++-.-+.+... ..+-.++..+++.  -.++..|.
T Consensus       397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq  476 (840)
T KOG2003|consen  397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ  476 (840)
T ss_pred             chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence                                  0011123445667777777777766554444332 2334555555555  34677888


Q ss_pred             HHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy16607        480 TCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC  559 (677)
Q Consensus       480 ~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  559 (677)
                      .+-..++.++.-+  +.+..+.|.+..        ..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+
T Consensus       477 qyad~aln~dryn--~~a~~nkgn~~f--------~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~  546 (840)
T KOG2003|consen  477 QYADIALNIDRYN--AAALTNKGNIAF--------ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC  546 (840)
T ss_pred             HHHHHHhcccccC--HHHhhcCCceee--------ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH
Confidence            8888888888777  888999998876        899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhc--------------CCCCcccchhhh-HHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        560 FERALSLALNENAADVWYNISHVAIITEC--------------SPFSFSTHTSYL-FIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       560 ~~~al~~~~~p~~~~~~~~l~~~~~~~~~--------------~p~~~~~~~~~~-~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                      |-+.-.  +--++..+++.++.+|..++.              .|..+...+.+. .|-+.|+..+|.+++-......|-
T Consensus       547 f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~  624 (840)
T KOG2003|consen  547 FLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC  624 (840)
T ss_pred             HHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence            999877  557889999999999985544              233333323232 555667777777766666666677


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       625 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      +.++.-+||..|....-+++|+.+|+++.-+.|+........+.|+.+.||.
T Consensus       625 nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny  676 (840)
T KOG2003|consen  625 NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY  676 (840)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence            7777777777777777788888999998888898888888888888888874

>KOG0495|consensus

Probab=99.90  E-value=4e-20  Score=187.07  Aligned_cols=355  Identities=12%  Similarity=0.049  Sum_probs=302.9

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI  377 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~  377 (677)
                      +...+-++-|..+|..+++.+|.....| ...+..--..|..++-..+|++++..-| ....|+..+..+...|+...|.
T Consensus       526 ~~k~~~~~carAVya~alqvfp~k~slW-lra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar  604 (913)
T KOG0495|consen  526 CEKRPAIECARAVYAHALQVFPCKKSLW-LRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAAR  604 (913)
T ss_pred             HHhcchHHHHHHHHHHHHhhccchhHHH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHH
Confidence            4456889999999999999998877777 5777777777999999999999999998 6677888899999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      .++.++++.+|++.++|+.-..+.....+++.|..+|.++....| ...+|+.-+.+...+++.++|+.+++++++..|+
T Consensus       605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~  683 (913)
T KOG0495|consen  605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPD  683 (913)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999998777 6788899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      ....|..+|+++.++++.+.|...|...++..|..  ...|..++.+-.        +.|+.-.|...++++.-.+|.+.
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--ipLWllLakleE--------k~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--IPLWLLLAKLEE--------KDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--chHHHHHHHHHH--------HhcchhhHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999999999998  999999999988        88999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC--------Ccccchhhh---HHhcCC
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF--------SFSTHTSYL---FIQGIS  606 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~--------~~~~~~~~~---~l~~~g  606 (677)
                      ..|......-.+.|..+.|...+.+|++  ..|.....|..-....-...+...        ..+.+....   .+....
T Consensus       754 ~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~  831 (913)
T KOG0495|consen  754 LLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK  831 (913)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999  778877776644332210000000        011222221   334667


Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      ++++|.+.|.++++.+|++.++|..+-..+...|.-++-.+.|.++....|.+.+.|....
T Consensus       832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS  892 (913)
T KOG0495|consen  832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS  892 (913)
T ss_pred             HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence            7888888888888888888888888888888888888888888888888888887776544

>KOG2076|consensus

Probab=99.90  E-value=2.6e-20  Score=195.96  Aligned_cols=319  Identities=14%  Similarity=0.125  Sum_probs=263.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      ...|..++..|++++|...+.++++.+| +..+|+.+|.+|...|+.+++....-.+-.++|.+.+.|..++....++|+
T Consensus       143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence            5667778888999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~  481 (677)
                      +.+|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|...     ......+..+...++-+.|++.
T Consensus       223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998322     2334557888888888999999


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH--cCCC------------------------
Q psy16607        482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ--MGLY------------------------  535 (677)
Q Consensus       482 ~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~------------------------  535 (677)
                      ++.++....+....+.+..++.+++        +..+++.|.........  ..++                        
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l--------~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFL--------KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHH--------HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence            9999984333222445566777776        77888888877765553  0010                        


Q ss_pred             --cHHH-HHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        536 --NAEL-FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       536 --~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                        +..+ ...++.+..+.+...+++..+  .......+ ++++.+..++..+.                   ..|++.+|
T Consensus       375 s~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~n~~~~d~~dL~~d~a~al~-------------------~~~~~~~A  433 (895)
T KOG2076|consen  375 SYDLRVIRLMICLVHLKERELLEALLHF--LVEDNVWVSDDVDLYLDLADALT-------------------NIGKYKEA  433 (895)
T ss_pred             CccchhHhHhhhhhcccccchHHHHHHH--HHHhcCChhhhHHHHHHHHHHHH-------------------hcccHHHH
Confidence              1112 333333344444444554444  33311223 56788999999999                   99999999


Q ss_pred             HHHHHHHHccCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        612 IQCLHLALSIDSS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       612 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      +.+|..+....+. +..+|+.+|.||..+|.+++|+..|++++.+.|++.++...|+.++.++|+
T Consensus       434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~  498 (895)
T KOG2076|consen  434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN  498 (895)
T ss_pred             HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence            9999999887663 467999999999999999999999999999999999999999999999997

>KOG0495|consensus

Probab=99.89  E-value=8.4e-19  Score=177.63  Aligned_cols=461  Identities=14%  Similarity=0.140  Sum_probs=358.8

Q ss_pred             HHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccc-cccchhhhhc-----c-chhhhccC---CCCcc
Q psy16607         21 HFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEA-EEEGIADSVL-----D-TNTIATAA---RPGTS   90 (677)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~-~~~~~~~~---~~~~~   90 (677)
                      |-|.--|+.|..+.+++=++=|.+-..|..-++.=-..|.+|-++. ...++.++-.     + ++++..+.   +-|  
T Consensus       416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--  493 (913)
T KOG0495|consen  416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG--  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC--
Confidence            4466679999999999999999999999998887777777777633 3334443311     1 12222211   111  


Q ss_pred             cccccCccCccccccc-------CCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhh
Q psy16607         91 LKTAANDQQPISTSVM-------STPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQ  163 (677)
Q Consensus        91 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~  163 (677)
                              ..++|+.-       ..+...-...+  +--|.++..++-++-|.++|..+|+..|.+...|......=..-
T Consensus       494 --------sv~TcQAIi~avigigvEeed~~~tw--~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h  563 (913)
T KOG0495|consen  494 --------SVITCQAIIRAVIGIGVEEEDRKSTW--LDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH  563 (913)
T ss_pred             --------ChhhHHHHHHHHHhhccccchhHhHH--hhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc
Confidence                    11222211       00111111111  33688999999999999999999999999999996543211111


Q ss_pred             hhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCccc
Q psy16607        164 LSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRT  243 (677)
Q Consensus       164 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  243 (677)
                      +..++.+.-                                                             +..|+.    
T Consensus       564 gt~Esl~Al-------------------------------------------------------------lqkav~----  578 (913)
T KOG0495|consen  564 GTRESLEAL-------------------------------------------------------------LQKAVE----  578 (913)
T ss_pred             CcHHHHHHH-------------------------------------------------------------HHHHHH----
Confidence            111111000                                                             000000    


Q ss_pred             ccccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCC
Q psy16607        244 AKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRD  323 (677)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  323 (677)
                                             .-+                 ...+...+....+...|+...|..++.++.+..|.+.
T Consensus       579 -----------------------~~p-----------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse  618 (913)
T KOG0495|consen  579 -----------------------QCP-----------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE  618 (913)
T ss_pred             -----------------------hCC-----------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence                                   000                 0001222233335556999999999999999998766


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607        324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG  403 (677)
Q Consensus       324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  403 (677)
                      ..| +......+...+++.|..+|.++....|...+|+.-+.+...+++.++|+.+++++++.+|.....|..+|.++.+
T Consensus       619 eiw-laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~  697 (913)
T KOG0495|consen  619 EIW-LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ  697 (913)
T ss_pred             HHH-HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence            666 5777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE  483 (677)
Q Consensus       404 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  483 (677)
                      +++.+.|.+.|...++..|..+..|..++.+-...|+.-.|..+++++.-.+|.+...|.....+-.+.|..+.|...+.
T Consensus       698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607        484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  563 (677)
Q Consensus       484 ~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  563 (677)
                      +|++..|++  ...|..-..+.-        .-++-..++    .+++....++.++...|.++....++++|.++|.++
T Consensus       778 kALQecp~s--g~LWaEaI~le~--------~~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra  843 (913)
T KOG0495|consen  778 KALQECPSS--GLLWAEAIWLEP--------RPQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA  843 (913)
T ss_pred             HHHHhCCcc--chhHHHHHHhcc--------CcccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998  666665554443        334434444    455566788999999999999999999999999999


Q ss_pred             HHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607        564 LSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  634 (677)
Q Consensus       564 l~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  634 (677)
                      +.  .+|++.++|..+-..+.                   ..|.-++-.+.+.++....|.+.+.|.....
T Consensus       844 vk--~d~d~GD~wa~fykfel-------------------~hG~eed~kev~~~c~~~EP~hG~~W~avSK  893 (913)
T KOG0495|consen  844 VK--KDPDNGDAWAWFYKFEL-------------------RHGTEEDQKEVLKKCETAEPTHGELWQAVSK  893 (913)
T ss_pred             Hc--cCCccchHHHHHHHHHH-------------------HhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence            99  89999999999888888                   9999999999999999999999998877654

>KOG0624|consensus

Probab=99.88  E-value=5.6e-20  Score=172.65  Aligned_cols=319  Identities=12%  Similarity=0.113  Sum_probs=269.7

Q ss_pred             hHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHH
Q psy16607        287 DKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIR  365 (677)
Q Consensus       287 ~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~  365 (677)
                      .-.+.+.++.     .|++..|+..|..+++.+| +....++..|.+|+..|+-.-|+.-+.+++++.| -..+....|.
T Consensus        41 hlElGk~lla-----~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   41 HLELGKELLA-----RGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHH-----hhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            3344444444     6999999999999999995 4555558999999999999999999999999999 5678899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHH---H------------HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH
Q psy16607        366 VYIRLDQPIRAIDIGRNALDCYPNEVT---I------------MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC  430 (677)
Q Consensus       366 ~~~~~g~~~~A~~~~~~al~~~p~~~~---~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  430 (677)
                      +++++|++++|..-|+.+++.+|++..   +            +......+.-.|+...|+++....+++.|-++..+..
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~  194 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA  194 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence            999999999999999999999995432   2            2334445566799999999999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH-HHHHHHH-HHHh
Q psy16607        431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV-WYNISHV-AILN  508 (677)
Q Consensus       431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~l~~~-~~l~  508 (677)
                      .+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+....-. |-.+-.+ -.+.
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999721111 1111111 1112


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAEL----FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      ........++|.++++..++.++.+|..+.+    +..+..|+...+++.+|+..+.+++.  .+|+++.++...+..|+
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHh
Confidence            2233447899999999999999999985543    44567888899999999999999999  99999999999999998


Q ss_pred             HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHH
Q psy16607        585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL  632 (677)
Q Consensus       585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  632 (677)
                                         ....|+.|+..|+++.+.++++..+...+
T Consensus       353 -------------------~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  353 -------------------GDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             -------------------hhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence                               99999999999999999999987665444

>KOG1174|consensus

Probab=99.88  E-value=1.6e-19  Score=173.70  Aligned_cols=322  Identities=14%  Similarity=0.051  Sum_probs=286.4

Q ss_pred             CcCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16607        319 CEFRDWWWKVQLGKCYFSLGLIREAQQQF--NSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT  395 (677)
Q Consensus       319 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~--~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  395 (677)
                      .|..+|.|....+.+.+..++...|...+  -.-....| +...+..+|.+++..|++.+|+..|+++.-++|.+....-
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD  270 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence            44556666556666666666665555544  44444556 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q psy16607        396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY  475 (677)
Q Consensus       396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  475 (677)
                      ..|.++...|+++.-.......+..+.....-|+--+..++...++..|+.+-+++++.+|.+..++...|.++...|+.
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~  350 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH  350 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence            99999999999999999999999988888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHH-HHH-HhccCH
Q psy16607        476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA-LCC-FYSQQY  553 (677)
Q Consensus       476 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~-~~~g~~  553 (677)
                      ++|+-.|+.+..+.|..  .+.|..+..+|.        ..|++.+|...-+.+++.-|.++.++..+| .++ ..----
T Consensus       351 ~~A~IaFR~Aq~Lap~r--L~~Y~GL~hsYL--------A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r  420 (564)
T KOG1174|consen  351 TQAVIAFRTAQMLAPYR--LEIYRGLFHSYL--------AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR  420 (564)
T ss_pred             HHHHHHHHHHHhcchhh--HHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence            99999999999999988  899999999998        999999999999999999999999999996 444 344456


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH
Q psy16607        554 DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA  633 (677)
Q Consensus       554 ~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  633 (677)
                      ++|.+++++++.  .+|....+-..++.++.                   ..|.+++++..+++.+...|+ ...+..||
T Consensus       421 EKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~-------------------~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lg  478 (564)
T KOG1174|consen  421 EKAKKFAEKSLK--INPIYTPAVNLIAELCQ-------------------VEGPTKDIIKLLEKHLIIFPD-VNLHNHLG  478 (564)
T ss_pred             HHHHHHHHhhhc--cCCccHHHHHHHHHHHH-------------------hhCccchHHHHHHHHHhhccc-cHHHHHHH
Confidence            899999999999  99999999999999998                   999999999999999998876 46889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       634 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      .++...+.+++|+++|..|+.++|++..+.-.+-.+-..
T Consensus       479 d~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  479 DIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            999999999999999999999999999988877665443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.88  E-value=1.4e-22  Score=203.01  Aligned_cols=261  Identities=17%  Similarity=0.222  Sum_probs=108.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDC--YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  438 (677)
                      +.+|.++...|++++|++++++.+..  .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            45677788888888888888655443  377777888888888888888888888888888877777777777777 677


Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHhhhcccccC
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYN  516 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~l~~l~~~~~~  516 (677)
                      +++++|+.+++++.+.. .++..+.....++...++++++...++++....  +.+  +..|..+|.++.        +.
T Consensus        91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~--------~~  159 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS--ARFWLALAEIYE--------QL  159 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---HHHHHHHHHHHH--------HC
T ss_pred             ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHH--------Hc
Confidence            88888888888777655 345666677777888888888888888866544  333  777888888887        88


Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH  596 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~  596 (677)
                      |++++|+..|+++++.+|+++.+...++.++...|+++++...++....  ..|.++..|..+|.++.            
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~------------  225 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYL------------  225 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHH------------
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhc------------
Confidence            8888888888888888888888888888888888888888888888777  45777778888888888            


Q ss_pred             hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                             .+|++++|+.+|++++..+|+++.++..+|.++...|+.++|..++++++.
T Consensus       226 -------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  226 -------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             -------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   888888888888888888888888888888888888888888888888765

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=4.3e-18  Score=194.30  Aligned_cols=327  Identities=11%  Similarity=0.091  Sum_probs=276.2

Q ss_pred             HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHH
Q psy16607        298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIR  375 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~  375 (677)
                      .+...|++++|..+++++.+.....+...+..+..+|.+.|++++|...|+++.+..  |+..+|..+...|.+.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            366789999999999999888766677777889999999999999999999998754  588999999999999999999


Q ss_pred             HHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----CcCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607        376 AIDIGRNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR----DATCMEAIACIGVNHFYNDQPEVALLFYRR  450 (677)
Q Consensus       376 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  450 (677)
                      |+.+|+++.+.. ..+...|..+...|.+.|++++|.++|.++...    .| +...+..+...|.+.|++++|.++|++
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999987643 226778899999999999999999999998763    34 567888888999999999999999999


Q ss_pred             HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHH
Q psy16607        451 LLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSL--ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYR  527 (677)
Q Consensus       451 al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~  527 (677)
                      +.+.+ +.+...|..+...|.+.|++++|+..|+++...  .|+   ...+..+...+.        +.|++++|.+.+.
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD---~~TynsLI~a~~--------k~G~~eeA~~l~~  673 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD---EVFFSALVDVAG--------HAGDLDKAFEILQ  673 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH--------hCCCHHHHHHHHH
Confidence            98876 457788999999999999999999999998876  344   667778888887        8999999999999


Q ss_pred             HHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607        528 RLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS  606 (677)
Q Consensus       528 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g  606 (677)
                      ++.+.. +.+...|..+...|.+.|++++|..+|+++......| +...|..+...|.                   +.|
T Consensus       674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~-------------------k~G  733 (1060)
T PLN03218        674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALC-------------------EGN  733 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-------------------HCC
Confidence            998764 4567889999999999999999999999987744445 4567888888888                   999


Q ss_pred             CHHHHHHHHHHHHccC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        607 DTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       607 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ++++|++.|+++.... ..+..+|..+...+.+.|++++|..++.++++..
T Consensus       734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            9999999999887642 2245678888899999999999999999998854

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.87  E-value=2.4e-18  Score=194.47  Aligned_cols=318  Identities=13%  Similarity=0.047  Sum_probs=260.7

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      ..|+...+.+++..+.+..-..+...+..+...|.+.|++++|...|+++.  .++..+|..+...|.+.|++++|+.+|
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf  313 (697)
T PLN03081        236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLY  313 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence            357777777877777776655566666788899999999999999998763  247788899999999999999999999


Q ss_pred             HHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        381 RNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       381 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      +++.+.. ..+...+..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.++|+++.+   .+
T Consensus       314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d  390 (697)
T PLN03081        314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KN  390 (697)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC
Confidence            9887643 2256678888899999999999999999988876 44677888899999999999999999988754   35


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC--Cc
Q psy16607        459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL--YN  536 (677)
Q Consensus       459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p--~~  536 (677)
                      ...|+.+...|.+.|+.++|++.|+++.+....+ ....+..+...+.        ..|..++|.++|+.+.+..+  .+
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~--------~~g~~~~a~~~f~~m~~~~g~~p~  461 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACR--------YSGLSEQGWEIFQSMSENHRIKPR  461 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHh--------cCCcHHHHHHHHHHHHHhcCCCCC
Confidence            6789999999999999999999999987654322 1556666777776        88999999999999886432  34


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      ...|..+..+|.+.|++++|.+.++++-   ..| +...|..+...+.                   ..|+++.|...++
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p-~~~~~~~Ll~a~~-------------------~~g~~~~a~~~~~  518 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRAP---FKP-TVNMWAALLTACR-------------------IHKNLELGRLAAE  518 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHCC---CCC-CHHHHHHHHHHHH-------------------HcCCcHHHHHHHH
Confidence            5678889999999999999999987652   334 4556888888887                   9999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        617 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       617 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      +++++.|++...|..++.+|.+.|++++|.+.++.+.+.
T Consensus       519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999998765

>PLN03077 Protein ECB2; Provisional

Probab=99.86  E-value=6.8e-19  Score=203.81  Aligned_cols=335  Identities=12%  Similarity=0.040  Sum_probs=209.5

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A  376 (677)
                      |.+.|++++|.++|+++...    +...+..+...|.+.|++++|+..|+++.+..  |+..++..+...+.+.|++++|
T Consensus       333 y~k~g~~~~A~~vf~~m~~~----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a  408 (857)
T PLN03077        333 YLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG  408 (857)
T ss_pred             HHhcCCHHHHHHHHhhCCCC----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence            44455555555555554321    11222445555555555555555555554322  3444444444455555555555


Q ss_pred             HHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607        377 IDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  455 (677)
Q Consensus       377 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  455 (677)
                      .+++..+.+... .+..++..+...|.+.|++++|.+.|++..+   .+...|..+...|...|+.++|+.+|+++....
T Consensus       409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~  485 (857)
T PLN03077        409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL  485 (857)
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            555555544321 2334444555555555555555555554322   233445555555555555555555555544322


Q ss_pred             CC-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607        456 LY-----------------------------------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  500 (677)
Q Consensus       456 ~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  500 (677)
                      +.                                   +......+...|.+.|+.++|...|+..   .+ +  ...|..
T Consensus       486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~-d--~~s~n~  559 (857)
T PLN03077        486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK-D--VVSWNI  559 (857)
T ss_pred             CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC-C--hhhHHH
Confidence            22                                   2233445556777778888888777775   23 2  677777


Q ss_pred             HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HhhccchHHHHHH
Q psy16607        501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALS-LALNENAADVWYN  578 (677)
Q Consensus       501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~p~~~~~~~~  578 (677)
                      +...+.        ..|+.++|++.|+++.+.. ..+...+..+...+.+.|..++|..+|+.+.+ ....| +...|..
T Consensus       560 lI~~~~--------~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~  630 (857)
T PLN03077        560 LLTGYV--------AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYAC  630 (857)
T ss_pred             HHHHHH--------HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHH
Confidence            777777        7888888888888877543 22345566666777888888888888888773 22233 3456677


Q ss_pred             HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607        579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  658 (677)
                      +..++.                   +.|++++|.+.++++ ...|+ ..+|..|-..+...|+.+.|....+++++++|+
T Consensus       631 lv~~l~-------------------r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~  689 (857)
T PLN03077        631 VVDLLG-------------------RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN  689 (857)
T ss_pred             HHHHHH-------------------hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence            777777                   999999999999886 35554 678888888888899999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCC
Q psy16607        659 LYETHYNQAVISNLVSVI  676 (677)
Q Consensus       659 ~~~~~~~la~~~~~~G~i  676 (677)
                      +...+..++.+|...|++
T Consensus       690 ~~~~y~ll~n~ya~~g~~  707 (857)
T PLN03077        690 SVGYYILLCNLYADAGKW  707 (857)
T ss_pred             CcchHHHHHHHHHHCCCh
Confidence            999999999999988874

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.86  E-value=1.2e-17  Score=190.73  Aligned_cols=343  Identities=10%  Similarity=0.023  Sum_probs=249.7

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A  376 (677)
                      +...|..++|+.+++.+..    .+...+..+-.++.+.|++++|...|+++.+..  |+..++..+...|.+.|++++|
T Consensus       416 ~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A  491 (1060)
T PLN03218        416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM  491 (1060)
T ss_pred             HHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence            4455666666666665543    234444666777777888888888888877754  4777788888888888888888


Q ss_pred             HHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        377 IDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       377 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      ..+|+++.+... .+...|..+...|.+.|++++|++.|.++....- .+...|..+...|.+.|++++|.++++++...
T Consensus       492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~  571 (1060)
T PLN03218        492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE  571 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            888888776542 2677777888888888888888888887765432 25667778888888888888888888887652


Q ss_pred             C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH
Q psy16607        455 G---LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ  531 (677)
Q Consensus       455 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~  531 (677)
                      .   ..+...+..+...|.+.|++++|.+.|+++.+.+... ....|..+...+.        +.|++++|+..|.++.+
T Consensus       572 ~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~--------k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCS--------QKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHH--------hcCCHHHHHHHHHHHHH
Confidence            1   2245677777778888888888888888877765322 1567777777777        78888888888888775


Q ss_pred             cC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607        532 MG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL  610 (677)
Q Consensus       532 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~  610 (677)
                      .. ..+...|..+...|.+.|++++|.++++++.+.+.. .+...+..+...|.                   +.|++++
T Consensus       643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~-------------------k~G~~ee  702 (1060)
T PLN03218        643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACS-------------------NAKNWKK  702 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH-------------------hCCCHHH
Confidence            42 223567777888888888888888888888774333 34556777777777                   9999999


Q ss_pred             HHHHHHHHHcc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCC
Q psy16607        611 AIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--SPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       611 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~G~i  676 (677)
                      |++.|+++...  .| +...|..+...|.+.|++++|.++|+++...  .|+ ...+..+...+.+.|++
T Consensus       703 A~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        703 ALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCH
Confidence            99999988653  34 4678999999999999999999999998765  344 45666666777777753

>KOG1174|consensus

Probab=99.86  E-value=6.6e-18  Score=162.60  Aligned_cols=309  Identities=13%  Similarity=0.110  Sum_probs=269.2

Q ss_pred             HhcccCHHH--HHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHH
Q psy16607        299 YHHENDVAS--AMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIR  375 (677)
Q Consensus       299 ~~~~g~~~~--A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~  375 (677)
                      ++..++...  +..++-+-....| +....+..+|.+++..|++.+|+..|+++...+| .....-..|.++...|++++
T Consensus       206 q~~~~~hs~a~~t~l~le~~~~lr-~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~  284 (564)
T KOG1174|consen  206 QMFNFKHSDASQTFLMLHDNTTLR-CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ  284 (564)
T ss_pred             HHHhcccchhhhHHHHHHhhccCC-ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence            333444444  4444555555554 4445558999999999999999999999999999 88888889999999999999


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607        376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  455 (677)
Q Consensus       376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  455 (677)
                      -..+....+........-|+.-+......+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+.
T Consensus       285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            99999999988877888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHH-HHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS-HVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       456 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~-~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      |...+.|..+..+|...|++.+|...-..++..-|.+  +.++..+| .++.       +.-.--++|...+++.+++.|
T Consensus       365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s--A~~LtL~g~~V~~-------~dp~~rEKAKkf~ek~L~~~P  435 (564)
T KOG1174|consen  365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS--ARSLTLFGTLVLF-------PDPRMREKAKKFAEKSLKINP  435 (564)
T ss_pred             hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc--hhhhhhhcceeec-------cCchhHHHHHHHHHhhhccCC
Confidence            9999999999999999999999999999999999988  77777776 4443       234456899999999999999


Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607        535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC  614 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~  614 (677)
                      ....+...++.++...|.+++++.++++.+.   +-.+...+..+|.++.                   ..+.+++|..+
T Consensus       436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~-------------------A~Ne~Q~am~~  493 (564)
T KOG1174|consen  436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMR-------------------AQNEPQKAMEY  493 (564)
T ss_pred             ccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHH-------------------HhhhHHHHHHH
Confidence            9999999999999999999999999999996   4445678899999998                   99999999999


Q ss_pred             HHHHHccCCCChHHHHHHHHHHHHc
Q psy16607        615 LHLALSIDSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       615 ~~~al~~~p~~~~~~~~la~~~~~~  639 (677)
                      |..++.++|++..+.-.+-.+....
T Consensus       494 y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  494 YYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHhcCccchHHHHHHHHHHhcc
Confidence            9999999999988777665554443

>TIGR00540 hemY_coli hemY protein

Probab=99.86  E-value=1.8e-18  Score=182.08  Aligned_cols=296  Identities=10%  Similarity=-0.001  Sum_probs=182.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCC
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV-TIMTEMARIFEGLNN  406 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~  406 (677)
                      ..|...+..|+++.|.+.+.++.+..| ....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            445555666666666666666666555 334445556666666666666666666666666553 344445666666666


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHcCCHHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN----NLALCCFYSQQYDMVVTCF  482 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~  482 (677)
                      +++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++....    ....-+...+..+++...+
T Consensus       169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            666666666666666666666666666666666666666666666665433332221    1111123333444445555


Q ss_pred             HHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHhccCHHHHHH
Q psy16607        483 ERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF--NNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       483 ~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~  558 (677)
                      .++....|..  .....+..++..+.        ..|++++|...++++++..|++....  ..........++.+.+++
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~--------~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~  320 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLI--------DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK  320 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHH--------HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence            5665555521  11666666666666        66777777777777777666665421  222222333466677777


Q ss_pred             HHHHHHHHhhccchH--HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH--HHHccCCCChHHHHHHHH
Q psy16607        559 CFERALSLALNENAA--DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH--LALSIDSSHGLSQNNLAV  634 (677)
Q Consensus       559 ~~~~al~~~~~p~~~--~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~  634 (677)
                      .++++++  ..|+++  .....+|.++.                   +.|++++|.++|+  .+++..|++.. +..+|.
T Consensus       321 ~~e~~lk--~~p~~~~~~ll~sLg~l~~-------------------~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~  378 (409)
T TIGR00540       321 LIEKQAK--NVDDKPKCCINRALGQLLM-------------------KHGEFIEAADAFKNVAACKEQLDAND-LAMAAD  378 (409)
T ss_pred             HHHHHHH--hCCCChhHHHHHHHHHHHH-------------------HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHH
Confidence            7777777  677777  66777777777                   7777777777777  46666665544 457788


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q psy16607        635 LEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       635 ~~~~~g~~~~A~~~~~~al~  654 (677)
                      ++.+.|+.++|.++|++++.
T Consensus       379 ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       379 AFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            88888888888888777755

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.86  E-value=1.4e-18  Score=196.41  Aligned_cols=341  Identities=12%  Similarity=-0.046  Sum_probs=248.5

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCChHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A  376 (677)
                      |.+.|++++|+.+|+++.+.....+...+..+...+...|..+.+.+++..+++..  ++..++..+...|.+.|++++|
T Consensus       199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A  278 (697)
T PLN03081        199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA  278 (697)
T ss_pred             HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence            45556677777777766665544444444555566666666666666666665543  3666667777788888888888


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607        377 IDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  455 (677)
Q Consensus       377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  455 (677)
                      ...|++..   +.+...|..+...|.+.|++++|+++|+++.+..- -+..++..+...+...|++++|.+++..+++..
T Consensus       279 ~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        279 RCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             HHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            88877653   34667777888888888888888888877765432 255677777777888888888888888777765


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-
Q psy16607        456 -LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-  533 (677)
Q Consensus       456 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-  533 (677)
                       +.+..++..+...|.+.|++++|...|+++.+  |+   ...|..+...|.        +.|+.++|++.|+++.+.. 
T Consensus       356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d---~~t~n~lI~~y~--------~~G~~~~A~~lf~~M~~~g~  422 (697)
T PLN03081        356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN---LISWNALIAGYG--------NHGRGTKAVEMFERMIAEGV  422 (697)
T ss_pred             CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC---eeeHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCC
Confidence             45666777788888888888888888877654  22   566777777777        7788888888888877532 


Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      ..+...+..+..++.+.|..++|..+|+.+.+...-..+...|..+...+.                   +.|++++|.+
T Consensus       423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-------------------r~G~~~eA~~  483 (697)
T PLN03081        423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-------------------REGLLDEAYA  483 (697)
T ss_pred             CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-------------------hcCCHHHHHH
Confidence            234556777777778888888888888877652111123345666666666                   9999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      .++++- ..| +..+|..+...+...|+++.|...+++++++.|++...+..++.+|...|++
T Consensus       484 ~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        484 MIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             HHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence            998752 334 4678999999999999999999999999999999999999999999998874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.86  E-value=4.3e-21  Score=192.22  Aligned_cols=257  Identities=15%  Similarity=0.070  Sum_probs=123.6

Q ss_pred             HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607        385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF  462 (677)
Q Consensus       385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  462 (677)
                      +..|.  .....+|.++...|++++|++++++.+..  .|++...|..+|.+....++++.|+..|++++..++.++..+
T Consensus         4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~   81 (280)
T PF13429_consen    4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY   81 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34454  23346799999999999999999766544  478899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC--CCcHHHH
Q psy16607        463 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG--LYNAELF  540 (677)
Q Consensus       463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~  540 (677)
                      ..++.+ ...+++++|+.+++++++..++   +..+.....++.        ..++++++...+.++....  +.++..|
T Consensus        82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~~---~~~l~~~l~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~  149 (280)
T PF13429_consen   82 ERLIQL-LQDGDPEEALKLAEKAYERDGD---PRYLLSALQLYY--------RLGDYDEAEELLEKLEELPAAPDSARFW  149 (280)
T ss_dssp             ----------------------------------------H-HH--------HTT-HHHHHHHHHHHHH-T---T-HHHH
T ss_pred             cccccc-cccccccccccccccccccccc---cchhhHHHHHHH--------HHhHHHHHHHHHHHHHhccCCCCCHHHH
Confidence            888888 7999999999999999887765   555666666776        8899999999999987655  6788999


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      ..+|.++.+.|++++|+.+|+++++  .+|++..++..++.++.                   ..|+++++...++....
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li-------------------~~~~~~~~~~~l~~~~~  208 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLI-------------------DMGDYDEAREALKRLLK  208 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH-------------------HCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999  89999999999999998                   99999999999999888


Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      ..|.++..+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.
T Consensus       209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence            88999999999999999999999999999999999999999999999999999974

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=4.9e-18  Score=178.82  Aligned_cols=298  Identities=11%  Similarity=-0.040  Sum_probs=243.7

Q ss_pred             HHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHc
Q psy16607        293 YLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDI--EAFIRMIRVYIRL  370 (677)
Q Consensus       293 ~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~la~~~~~~  370 (677)
                      ..-|.+.+..|+++.|.+.+.++.+..|. ....+...|.+....|++++|..++.++.+..|+.  .+....+.++...
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~  166 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ  166 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence            34456667789999999999999988753 34444678999999999999999999999988843  4566679999999


Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHH----HHHHHHHhCCChHHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA----CIGVNHFYNDQPEVALL  446 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~  446 (677)
                      |++++|...++++++..|+++.++..++.++...|++++|.+.+.+..+....+...+.    ....-+...+..+++.+
T Consensus       167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~  246 (409)
T TIGR00540       167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID  246 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999999999999999999999987554433322    22222234444555666


Q ss_pred             HHHHHHHcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHH--HHHHHHHHHhhhcccccCCCHH
Q psy16607        447 FYRRLLQMGL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW--YNISHVAILNALSTSVYNDQPE  520 (677)
Q Consensus       447 ~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~l~~~~~l~~l~~~~~~~~~~  520 (677)
                      .+.++....|    +++.++..++..+...|++++|.+.++++++..|++  ....  ........        ..++.+
T Consensus       247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~--~~~~~~~l~~~~~l--------~~~~~~  316 (409)
T TIGR00540       247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD--RAISLPLCLPIPRL--------KPEDNE  316 (409)
T ss_pred             HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc--ccchhHHHHHhhhc--------CCCChH
Confidence            7888888777    589999999999999999999999999999999987  3221  11112222        568889


Q ss_pred             HHHHHHHHHHHcCCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607        521 VALLFYRRLLQMGLYNA--ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS  598 (677)
Q Consensus       521 ~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~  598 (677)
                      .+++.++++++..|+++  .....+|.++.+.|++++|.++|+++......|+... +..+|.++.              
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~--------------  381 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD--------------  381 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH--------------
Confidence            99999999999999999  8899999999999999999999995333226787766 458999998              


Q ss_pred             hhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        599 YLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       599 ~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                           +.|+.++|.++|++++..
T Consensus       382 -----~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       382 -----QAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             -----HcCCHHHHHHHHHHHHHH
Confidence                 999999999999998653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0548|consensus

Probab=99.85  E-value=1.2e-18  Score=174.11  Aligned_cols=336  Identities=13%  Similarity=0.107  Sum_probs=261.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      -..|...+..|+|+.|+.+|..++.++| +...+.+...+|..+|+|++|+.--.+.++++|.-+..|..+|..+.-+|+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence            4578889999999999999999999999 788889999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC-----------------C-------hHHHHHHHHHHHHcCCCC----
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYND-----------------Q-------PEVALLFYRRLLQMGLYN----  458 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~-------~~~A~~~~~~al~~~~~~----  458 (677)
                      |++|+..|.+.++.+|++......++.++....                 +       .+.+.....+.+..+|.+    
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~  165 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY  165 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence            999999999999999999888888877662220                 0       000111111111111100    


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Q psy16607        459 ----------------------------------------------------------AELFNNLALCCFYSQQYDMVVT  480 (677)
Q Consensus       459 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~  480 (677)
                                                                                ......+|.......++..|++
T Consensus       166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q  245 (539)
T KOG0548|consen  166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ  245 (539)
T ss_pred             cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence                                                                      0124578889999999999999


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHhccCH
Q psy16607        481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE-------LFNNLALCCFYSQQY  553 (677)
Q Consensus       481 ~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~  553 (677)
                      .|..+++++ .+  ...+.+.+.++.        ..|.+.+.+....++++.......       +...+|..+.+.+++
T Consensus       246 ~y~~a~el~-~~--it~~~n~aA~~~--------e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~  314 (539)
T KOG0548|consen  246 HYAKALELA-TD--ITYLNNIAAVYL--------ERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY  314 (539)
T ss_pred             HHHHHHhHh-hh--hHHHHHHHHHHH--------hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence            999999999 65  788888999988        999999999888888866554332       334466778888999


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc----CCCCccc-chhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607        554 DMVVTCFERALSLALNENAADVWYNISHVAIITEC----SPFSFST-HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS  628 (677)
Q Consensus       554 ~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~----~p~~~~~-~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~  628 (677)
                      +.|+.+|++++.....|+...-....-......+.    .|..... ......+++.|+|..|+..|.+++..+|+++..
T Consensus       315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l  394 (539)
T KOG0548|consen  315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL  394 (539)
T ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence            99999999999754444333222222111111111    1111111 122236679999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       629 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      |.++|.||.++|.+..|+...+++++++|+...+|..-|.+++.+-
T Consensus       395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987653

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=2.2e-19  Score=196.05  Aligned_cols=251  Identities=11%  Similarity=0.064  Sum_probs=184.0

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChH
Q psy16607        372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL---------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE  442 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  442 (677)
                      .+++|+..|+++++.+|++..++..+|.++...         +++++|+..++++++++|++..++..+|.++...|+++
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence            456777777777777777777777777766533         33678888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHH
Q psy16607        443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVA  522 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A  522 (677)
                      +|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+  ...+..++.++.        ..|++++|
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~--------~~g~~eeA  425 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--AAAGITKLWITY--------YHTGIDDA  425 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHH--------hccCHHHH
Confidence            88888888888888888888888888888888888888888888888876  555555554454        66788888


Q ss_pred             HHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607        523 LLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF  601 (677)
Q Consensus       523 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~  601 (677)
                      +..+++++... |+++..+..+|.++...|++++|...+.+...  ..|....++..++..|.                 
T Consensus       426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~-----------------  486 (553)
T PRK12370        426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYC-----------------  486 (553)
T ss_pred             HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHh-----------------
Confidence            88888887664 67777788888888888888888888888766  66777777777777766                 


Q ss_pred             HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                        ..|  ++|...+++.++.......-......++.-.|+.+.+... +++.+.+
T Consensus       487 --~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        487 --QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             --ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence              666  3666666665554322222223377777778887777777 6665543

>KOG4162|consensus

Probab=99.85  E-value=5.3e-18  Score=175.82  Aligned_cols=373  Identities=17%  Similarity=0.117  Sum_probs=219.9

Q ss_pred             hhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--C-CH
Q psy16607        281 LAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--T-DI  357 (677)
Q Consensus       281 ~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~  357 (677)
                      ...+...+.+... +.+.....|+++.+.+.|++++...-.....| +.++.++...|.-..|+.+.+..+...  | ++
T Consensus       316 ~~~~qnd~ai~d~-Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w-~~~als~saag~~s~Av~ll~~~~~~~~~ps~~  393 (799)
T KOG4162|consen  316 LKKFQNDAAIFDH-LTFALSRCGQFEVLAEQFEQALPFSFGEHERW-YQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI  393 (799)
T ss_pred             HhhhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH-HHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence            3344434444433 34445567888888888888876653333344 678888888888778888888877766  4 44


Q ss_pred             HHHHHHHHH-HHHcCChHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHh
Q psy16607        358 EAFIRMIRV-YIRLDQPIRAIDIGRNALDCYP-----NEVTIMTEMARIFEGLN-----------NMPMSVKYYKLILKR  420 (677)
Q Consensus       358 ~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~  420 (677)
                      ..+...+.+ +.+.+..++++.+..+++....     -.+..+..+|.+|..+-           ...++++.++++++.
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~  473 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF  473 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence            444444443 3456777777777777776321     12345566666654321           245677777777777


Q ss_pred             CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc---h--
Q psy16607        421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN---A--  494 (677)
Q Consensus       421 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~--  494 (677)
                      +|+|+.+.++++.-|...++.+.|+.+.+++++. ..+++..|..++.++...+++.+|+...+.++...+++.   +  
T Consensus       474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            7777777777777777777777777777777777 455677777777777777777777777777776665530   0  


Q ss_pred             ----------HHHHHHHHHHHHHhh----------------h--cccccCCCHHHHHHHHHHHHHc--------------
Q psy16607        495 ----------ADVWYNISHVAILNA----------------L--STSVYNDQPEVALLFYRRLLQM--------------  532 (677)
Q Consensus       495 ----------~~~~~~l~~~~~l~~----------------l--~~~~~~~~~~~A~~~~~~al~~--------------  532 (677)
                                ..+.-.+...+.++.                +  +-....++..+|++.++++...              
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence                      001111111111111                0  0011222334444444333210              


Q ss_pred             -------CCCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhh
Q psy16607        533 -------GLYN-----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL  600 (677)
Q Consensus       533 -------~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~  600 (677)
                             .|+.     ...|...+..+...+..++|..++.++-.  ..|..+..|+..|.++.                
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~----------------  695 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLE----------------  695 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHH----------------
Confidence                   0111     24555556666666666666666666655  55666666666666665                


Q ss_pred             HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST--YLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       601 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                         ..|+.++|.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.++.+.|++
T Consensus       696 ---~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  696 ---VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             ---HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence               66666666666666666666666666666666666665555555  66666666666666666666666666553

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=8.9e-19  Score=191.38  Aligned_cols=261  Identities=12%  Similarity=0.027  Sum_probs=220.6

Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCcHH
Q psy16607        326 WKVQLGKCYFSL---GLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL---------DQPIRAIDIGRNALDCYPNEVT  392 (677)
Q Consensus       326 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~  392 (677)
                      .++..|..+...   +.+++|+..|+++++.+| +..++..+|.++...         +++++|+..++++++++|+++.
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            345666655443   457899999999999999 888999999887643         3489999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      ++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877778788889


Q ss_pred             CCHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q psy16607        473 QQYDMVVTCFERALSLA-LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  551 (677)
Q Consensus       473 g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  551 (677)
                      |++++|+..+++++... |++  +..+..+|.++.        ..|++++|...+.+.....|.+...+..++..+...|
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~--~~~~~~la~~l~--------~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDN--PILLSMQVMFLS--------LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccC--HHHHHHHHHHHH--------hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence            99999999999999875 665  888999999998        8999999999999999999999999999999999888


Q ss_pred             CHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        552 QYDMVVTCFERALSLA-LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       552 ~~~~A~~~~~~al~~~-~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                        ++|...+++.++.. ..+.+.   .....++.                   -.|+-+.+... +++.+.
T Consensus       490 --~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~-------------------~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        490 --ERALPTIREFLESEQRIDNNP---GLLPLVLV-------------------AHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             --HHHHHHHHHHHHHhhHhhcCc---hHHHHHHH-------------------HHhhhHHHHHH-HHhhcc
Confidence              47888787766521 112222   22455554                   67777777666 666554

>PLN03077 Protein ECB2; Provisional

Probab=99.85  E-value=1.3e-17  Score=193.27  Aligned_cols=317  Identities=9%  Similarity=-0.000  Sum_probs=271.3

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID  378 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~  378 (677)
                      +...|++++|.+++..+.+.....+...+..+...|.+.|++++|.+.|+++.+  ++..+|..+...|.+.|++++|+.
T Consensus       399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~  476 (857)
T PLN03077        399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALI  476 (857)
T ss_pred             HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHH
Confidence            556799999999999999887666777778899999999999999999998753  467788899999999999999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      .|+++....+.+...+..+...+.+.|+.+.+.+.+..+++..-. +......+...|.+.|+.++|...|+..    +.
T Consensus       477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~  552 (857)
T PLN03077        477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK  552 (857)
T ss_pred             HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC
Confidence            999998765567777888888899999999999999998886543 4556678889999999999999999886    56


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC--
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSL--ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG--  533 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~--  533 (677)
                      +...|+.+...|...|+.++|+..|+++.+.  .|+   ...+..+...+.        +.|+.++|.++|+.+.+..  
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd---~~T~~~ll~a~~--------~~g~v~ea~~~f~~M~~~~gi  621 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD---EVTFISLLCACS--------RSGMVTQGLEYFHSMEEKYSI  621 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---cccHHHHHHHHh--------hcChHHHHHHHHHHHHHHhCC
Confidence            7889999999999999999999999999875  354   445555555666        8899999999999998443  


Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      ..+...|..+..++.+.|++++|.+.++++-   ..|+ ..+|..+-..+.                   ..|+.+.+..
T Consensus       622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd-~~~~~aLl~ac~-------------------~~~~~e~~e~  678 (857)
T PLN03077        622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD-PAVWGALLNACR-------------------IHRHVELGEL  678 (857)
T ss_pred             CCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC-HHHHHHHHHHHH-------------------HcCChHHHHH
Confidence            2345789999999999999999999999863   4455 566776666666                   8999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      ..++++++.|++...+..++.+|...|++++|.+..+.+.+.
T Consensus       679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999988763

>KOG4162|consensus

Probab=99.85  E-value=1.3e-17  Score=172.91  Aligned_cols=344  Identities=15%  Similarity=0.082  Sum_probs=288.6

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhhC--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHH
Q psy16607        295 FEYLYHHENDVASAMDLAVESTKAC--EFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRV  366 (677)
Q Consensus       295 ~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~  366 (677)
                      .+..+...|.-..|+.+.+......  |......+..-..|....|.+++++.+..+++....      .+..+..+|.+
T Consensus       363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~  442 (799)
T KOG4162|consen  363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA  442 (799)
T ss_pred             HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence            3444555688899999999999877  444444434444566778999999999999998332      56788888888


Q ss_pred             HHHcC-----------ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-cCCHHHHHHHHHH
Q psy16607        367 YIRLD-----------QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVN  434 (677)
Q Consensus       367 ~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  434 (677)
                      |..+-           ...++++.++++++.+|.|+.+.+.++.-|...++.+.|++..+++++++ .+++.+|..++.+
T Consensus       443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv  522 (799)
T KOG4162|consen  443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV  522 (799)
T ss_pred             HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            86542           25689999999999999999999999999999999999999999999995 4579999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH-------------
Q psy16607        435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI-------------  501 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l-------------  501 (677)
                      +...+++.+|+.+.+.++...++|-........+-...++.++|+..+...+..-...  ..+-..+             
T Consensus       523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~--~~~q~~~~~g~~~~lk~~l~  600 (799)
T KOG4162|consen  523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE--YGVQQTLDEGKLLRLKAGLH  600 (799)
T ss_pred             HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh--hhHhhhhhhhhhhhhhcccc
Confidence            9999999999999999999999998888888888888999999999999988775432  1111000             


Q ss_pred             -----------------HHHHH-Hhhh------------------------------cccccCCCHHHHHHHHHHHHHcC
Q psy16607        502 -----------------SHVAI-LNAL------------------------------STSVYNDQPEVALLFYRRLLQMG  533 (677)
Q Consensus       502 -----------------~~~~~-l~~l------------------------------~~~~~~~~~~~A~~~~~~al~~~  533 (677)
                                       +.+.. ...+                              ..+...++.++|..++.++-.++
T Consensus       601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~  680 (799)
T KOG4162|consen  601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID  680 (799)
T ss_pred             cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence                             00000 0000                              01334567788999999999999


Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      |..+..|+..|.++...|+.++|.+.|..++.  .+|+++.+...+|.++.                   +.|+..-|..
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll-------------------e~G~~~la~~  739 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL-------------------ELGSPRLAEK  739 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH-------------------HhCCcchHHH
Confidence            99999999999999999999999999999999  99999999999999999                   9998888887


Q ss_pred             --HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        614 --CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       614 --~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                        .+..+++++|.++++|+.+|.++.+.|+.++|.++|..++++.+.+|-
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence              999999999999999999999999999999999999999999988874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.84  E-value=2e-17  Score=173.31  Aligned_cols=293  Identities=10%  Similarity=0.013  Sum_probs=161.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCC
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRM-IRVYIRLDQPIRAIDIGRNALDCYPNEVT-IMTEMARIFEGLNN  406 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~  406 (677)
                      ..|......|++++|.+...+..+..+++..++.+ +.+....|+++.|..++.++.+.+|++.. .....+.++...|+
T Consensus        89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~  168 (398)
T PRK10747         89 EQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE  168 (398)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC
Confidence            34444445566666665555544433333333333 33335666666666666666665555432 22233556666666


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH--------HHHHHHHHcCCHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN--------NLALCCFYSQQYDMV  478 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~la~~~~~~g~~~~A  478 (677)
                      +++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+.++....        .+........+-+..
T Consensus       169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l  248 (398)
T PRK10747        169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL  248 (398)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            666666666666666666666666666666666666666666665555444332211        111111111222222


Q ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607        479 VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       479 ~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      .+.++......|++  +.++..++..+.        ..|+.++|...++++++. +.++......+.+  ..++++++++
T Consensus       249 ~~~w~~lp~~~~~~--~~~~~~~A~~l~--------~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~  315 (398)
T PRK10747        249 KRWWKNQSRKTRHQ--VALQVAMAEHLI--------ECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEK  315 (398)
T ss_pred             HHHHHhCCHHHhCC--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHH
Confidence            33333332333334  556666666665        666666666666666663 3344333333332  3366666777


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607        559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  638 (677)
Q Consensus       559 ~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  638 (677)
                      .+++.++  ..|+++..+..+|.++.                   ..|++++|.++|+++++..|++ ..+..++.++.+
T Consensus       316 ~~e~~lk--~~P~~~~l~l~lgrl~~-------------------~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~  373 (398)
T PRK10747        316 VLRQQIK--QHGDTPLLWSTLGQLLM-------------------KHGEWQEASLAFRAALKQRPDA-YDYAWLADALDR  373 (398)
T ss_pred             HHHHHHh--hCCCCHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence            7777666  66777777777777666                   7777777777777777776664 334567777777


Q ss_pred             cCCHHHHHHHHHHHHHhC
Q psy16607        639 EGHIERASTYLQAAAASS  656 (677)
Q Consensus       639 ~g~~~~A~~~~~~al~~~  656 (677)
                      .|+.++|..+|++++.+.
T Consensus       374 ~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        374 LHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             cCCHHHHHHHHHHHHhhh
Confidence            777777777777776543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=2.7e-17  Score=172.22  Aligned_cols=293  Identities=11%  Similarity=0.029  Sum_probs=236.9

Q ss_pred             HHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHcC
Q psy16607        294 LFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDI--EAFIRMIRVYIRLD  371 (677)
Q Consensus       294 l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~la~~~~~~g  371 (677)
                      .-|.+.+..|++++|.+...+..+.. +.....+...+......|+++.|..+|.++.+..|+.  ......+.++...|
T Consensus        89 ~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g  167 (398)
T PRK10747         89 EQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN  167 (398)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence            44556666899999998888876654 2233333445667699999999999999999988843  33445699999999


Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH--------HHHHHHHHhCCChHH
Q psy16607        372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI--------ACIGVNHFYNDQPEV  443 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~~g~~~~  443 (677)
                      ++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+.+....        ..+........+.+.
T Consensus       168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~  247 (398)
T PRK10747        168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG  247 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999999999999999999999999999999999988776543322        222222223334445


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHH
Q psy16607        444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVAL  523 (677)
Q Consensus       444 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~  523 (677)
                      ..+.++..-...|+++.++..++..+...|+.++|...++++++..++   .......+.+          ..++.++++
T Consensus       248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~---~~l~~l~~~l----------~~~~~~~al  314 (398)
T PRK10747        248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD---ERLVLLIPRL----------KTNNPEQLE  314 (398)
T ss_pred             HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHhhc----------cCCChHHHH
Confidence            555555555566789999999999999999999999999999996554   4333333332          459999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      +.+++.++..|+++..+..+|.++...+++++|..+|+++++  ..|++.. +..++.++.                   
T Consensus       315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~-~~~La~~~~-------------------  372 (398)
T PRK10747        315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYD-YAWLADALD-------------------  372 (398)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH-HHHHHHHHH-------------------
Confidence            999999999999999999999999999999999999999999  7788655 557899988                   


Q ss_pred             cCCCHHHHHHHHHHHHccC
Q psy16607        604 GISDTRLAIQCLHLALSID  622 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~  622 (677)
                      +.|+.++|.++|++++.+.
T Consensus       373 ~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        373 RLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HcCCHHHHHHHHHHHHhhh
Confidence            9999999999999998754

>KOG1125|consensus

Probab=99.83  E-value=3.7e-19  Score=179.16  Aligned_cols=247  Identities=17%  Similarity=0.244  Sum_probs=211.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      +..|..+++.|...+|.-.|+.+++.+| +.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            5789999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHH-------HHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIAC-------IGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDM  477 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~  477 (677)
                      -.+|++++.+-+...|........       ...-......+..-.++|-.+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999888743211100       00001111123345566777777777  789999999999999999999


Q ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHH
Q psy16607        478 VVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  557 (677)
Q Consensus       478 A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  557 (677)
                      |+.||+.||...|++  ...|..+|..+.        ...+.++|+..|++++++.|....++++||.++..+|.|++|+
T Consensus       449 aiDcf~~AL~v~Pnd--~~lWNRLGAtLA--------N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  449 AVDCFEAALQVKPND--YLLWNRLGATLA--------NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHHHHHHHHhcCCch--HHHHHHhhHHhc--------CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            999999999999999  999999999998        8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc---cc-----hHHHHHHHHHHHH
Q psy16607        558 TCFERALSLALN---EN-----AADVWYNISHVAI  584 (677)
Q Consensus       558 ~~~~~al~~~~~---p~-----~~~~~~~l~~~~~  584 (677)
                      ++|-.++.+...   +.     +..+|..|-.++.
T Consensus       519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als  553 (579)
T KOG1125|consen  519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS  553 (579)
T ss_pred             HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence            999999985322   11     1246666666555

>KOG1125|consensus

Probab=99.83  E-value=2.5e-19  Score=180.36  Aligned_cols=259  Identities=14%  Similarity=0.097  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  438 (677)
                      --+..|..+++.|++.+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...
T Consensus       287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNN-------LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS  511 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~  511 (677)
                      |.-.+|+.++.+-+...|........       ...-+.....+..-.+.|-.+....|....+++...||.+|.     
T Consensus       367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-----  441 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-----  441 (579)
T ss_pred             hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-----
Confidence            99999999999999877543211110       000011112233445666677777773223999999999998     


Q ss_pred             ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607        512 TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF  591 (677)
Q Consensus       512 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~  591 (677)
                         -.|++++|+.+|+.++...|++...|+.||-.+....+.++|+..|.+|++  +.|....+++++|.+++       
T Consensus       442 ---ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~m-------  509 (579)
T KOG1125|consen  442 ---LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCM-------  509 (579)
T ss_pred             ---cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhh-------
Confidence               899999999999999999999999999999999999999999999999999  99999999999999999       


Q ss_pred             CcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC----------hHHHHHHHHHHHHcCCHHHHH
Q psy16607        592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH----------GLSQNNLAVLEAREGHIERAS  646 (677)
Q Consensus       592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~  646 (677)
                                  .+|.|++|+++|-.++.+.+..          ..+|..|=.++...++.+-+.
T Consensus       510 ------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  510 ------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             ------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence                        9999999999999999986641          246766666677777766443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=1.6e-18  Score=173.71  Aligned_cols=122  Identities=11%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             CChHHHHHHHHHHHHcCC---C-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYP---N-EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL  446 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  446 (677)
                      ++.+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            445556666666664322   1 244566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      .|+++++++|++..++.++|.++...|++++|+..|+++++.+|++
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            6666666666666666666666666666666666666666666654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=7.4e-18  Score=168.95  Aligned_cols=155  Identities=12%  Similarity=-0.032  Sum_probs=119.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHccC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        333 CYFSLGLIREAQQQFNSALNQF---T--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       333 ~~~~~g~~~~A~~~~~~al~~~---p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      .....+..+.++..+.+++...   |  ....++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus        35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence            3344466788888888888633   3  4567888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      ++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..|.++..
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHh
Confidence            888888888888888888888888888888888888888888888888887632111 1223445677777777766554


Q ss_pred             h
Q psy16607        488 L  488 (677)
Q Consensus       488 ~  488 (677)
                      .
T Consensus       194 ~  194 (296)
T PRK11189        194 K  194 (296)
T ss_pred             h
Confidence            3

>KOG1127|consensus

Probab=99.80  E-value=1.2e-17  Score=176.75  Aligned_cols=349  Identities=15%  Similarity=0.122  Sum_probs=278.1

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      +.+...|+..|-++++.++.-.+.+ ..+|..|....+...|.++|+++.++++ +..+....+..|.+..+++.|....
T Consensus       471 rK~~~~al~ali~alrld~~~apaf-~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAF-AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            3568889999999999995444444 7899999988899999999999999998 8999999999999999999999997


Q ss_pred             HHHHHcCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        381 RNALDCYPNE--VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       381 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      -.+-+..|..  ...|..+|..|...+++..|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            7766666643  34577799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH-------H
Q psy16607        459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL-------Q  531 (677)
Q Consensus       459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al-------~  531 (677)
                      ....+..+.+....|+|.+|+..+...+......  ......++.+++ +....+...|-..+|...+++.+       .
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e--~~~q~gLaE~~i-r~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE--RTGQNGLAESVI-RDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887665443  333333333332 11111112222222222222221       1


Q ss_pred             cC----------------------C-----------------------------------------CcHHHHHHHHHHHH
Q psy16607        532 MG----------------------L-----------------------------------------YNAELFNNLALCCF  548 (677)
Q Consensus       532 ~~----------------------p-----------------------------------------~~~~~~~~la~~~~  548 (677)
                      ..                      |                                         .++..|+++|..|.
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl  786 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL  786 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence            11                      0                                         01334666666665


Q ss_pred             h--------ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        549 Y--------SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       549 ~--------~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      +        +.+...|+.+++++++  ...++...|..||.+ .                   ..|++.-|..+|-+.+.
T Consensus       787 r~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-s-------------------g~gnva~aQHCfIks~~  844 (1238)
T KOG1127|consen  787 RYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-S-------------------GIGNVACAQHCFIKSRF  844 (1238)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-h-------------------ccchhhhhhhhhhhhhh
Confidence            4        1233467788888887  677777778888776 3                   78999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      ..|...-.|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+|
T Consensus       845 sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~i  900 (1238)
T KOG1127|consen  845 SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRI  900 (1238)
T ss_pred             ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.79  E-value=5.4e-17  Score=158.02  Aligned_cols=203  Identities=16%  Similarity=0.136  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  470 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  470 (677)
                      ...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.+++++...|.+...+..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            44555666666666666666666666666666555555666666666666666666666666655555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607        471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  550 (677)
Q Consensus       471 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  550 (677)
                      ..|++++|+..+++++...+.                                          +.....+..+|.++...
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~~~~  148 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLY------------------------------------------PQPARSLENAGLCALKA  148 (234)
T ss_pred             HcccHHHHHHHHHHHHhcccc------------------------------------------ccchHHHHHHHHHHHHc
Confidence            555555555555555543211                                          22334455555666666


Q ss_pred             cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHH
Q psy16607        551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQN  630 (677)
Q Consensus       551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~  630 (677)
                      |++++|...+++++.  ..|++...+..++.++.                   ..|++++|+..+++++...|.++..+.
T Consensus       149 g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~  207 (234)
T TIGR02521       149 GDFDKAEKYLTRALQ--IDPQRPESLLELAELYY-------------------LRGQYKDARAYLERYQQTYNQTAESLW  207 (234)
T ss_pred             CCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            666666666666665  55555566666666665                   666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        631 NLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       631 ~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      .++.++...|+.++|..+.+.+....
T Consensus       208 ~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       208 LGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            66666666677777666666655543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156|consensus

Probab=99.79  E-value=3.6e-16  Score=159.29  Aligned_cols=367  Identities=12%  Similarity=0.022  Sum_probs=255.5

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI  377 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~  377 (677)
                      .+..++|.+.++..+.+++..| .....+...|..+...|+-++|....+.++..++ +...|..+|.++....+|++|+
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai   95 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI   95 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence            5667888899999998888775 3444447888888888999999999998888887 7788888899998889999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--  455 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  455 (677)
                      ++|+.++.+.|+|..+|.-++.+..++++++-....-.+.+++.|..-..|...+..+...|++..|....+...+..  
T Consensus        96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen   96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT  175 (700)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999888888888888888888888888888888999998888888777654  


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH
Q psy16607        456 -LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL  529 (677)
Q Consensus       456 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a  529 (677)
                       |.....-......|..+-..+...  ++++++..-..     .........+.++.        +.+++++|...|...
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~~e~~i~Dkla~~e~ka~l~~--------kl~~lEeA~~~y~~L  245 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLDNEKQIVDKLAFEETKADLLM--------KLGQLEEAVKVYRRL  245 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHhhhhHHHHHHHHhhhHHHHHH--------HHhhHHhHHHHHHHH
Confidence             333333333333333333232222  44444433222     11122233445555        889999999999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHh-----------------------------------------
Q psy16607        530 LQMGLYNAELFNNLALCCFYSQQYDMVV-TCFERALSLA-----------------------------------------  567 (677)
Q Consensus       530 l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~-----------------------------------------  567 (677)
                      +..+|++...+..+-.++.+-.+.-+++ ..|...-+..                                         
T Consensus       246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d  325 (700)
T KOG1156|consen  246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD  325 (700)
T ss_pred             HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence            9999999998888888876333334444 3333222100                                         


Q ss_pred             -----hccchHHHHHHHHHHHHHh-hc--------CCCCcccchhhhH-------HhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607        568 -----LNENAADVWYNISHVAIIT-EC--------SPFSFSTHTSYLF-------IQGISDTRLAIQCLHLALSIDSSHG  626 (677)
Q Consensus       568 -----~~p~~~~~~~~l~~~~~~~-~~--------~p~~~~~~~~~~~-------l~~~g~~~~A~~~~~~al~~~p~~~  626 (677)
                           .+|......-.++.-|... ..        .....++....|.       +...|+++.|..+++.++...|.-.
T Consensus       326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli  405 (700)
T KOG1156|consen  326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI  405 (700)
T ss_pred             hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence                 0000000111111111100 00        0011244555663       3389999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      +.+...|.++...|++++|...++.+.+++-.|.-.-..-|.-..++.+|
T Consensus       406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i  455 (700)
T KOG1156|consen  406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI  455 (700)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999866654443445544444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.79  E-value=5.7e-17  Score=157.86  Aligned_cols=200  Identities=13%  Similarity=0.092  Sum_probs=181.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      ....+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.|+++++..|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc
Q psy16607        436 FYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS  513 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~  513 (677)
                      ...|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|.+  ...+..++.++.       
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~-------  180 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELYY-------  180 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHH-------
Confidence            99999999999999999854  4566788889999999999999999999999998887  778888888887       


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                       ..|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus       181 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       181 -LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence             888888888888888888888888888888888888888888887776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550|consensus

Probab=99.79  E-value=3.2e-17  Score=158.38  Aligned_cols=342  Identities=15%  Similarity=0.123  Sum_probs=263.5

Q ss_pred             HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHH
Q psy16607        298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A  376 (677)
                      .++...+|.+|+..+..+++.+|.+...| ...+-+++..|+|++|....++.+++.+ ........+.++..+++..+|
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy-~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A  136 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMCPDNASYY-SNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA  136 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhCccchhhh-chhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence            35667899999999999999998775555 7999999999999999999999999888 677888888888888888777


Q ss_pred             HHHHHHHH------------HcC------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607        377 IDIGRNAL------------DCY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       377 ~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  438 (677)
                      .+.++..-            .+.      |....+....+.++...|++++|...--..+++++.+.++++..|.+++..
T Consensus       137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~  216 (486)
T KOG0550|consen  137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN  216 (486)
T ss_pred             HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence            76654211            011      333445667889999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHH
Q psy16607        439 DQPEVALLFYRRLLQMGLYNA------------ELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHV  504 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~  504 (677)
                      ++.+.|+.+|++++.++|++.            ..+...|.-.++.|++.+|.++|..+|.++|++  ..+..+.+++.+
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v  296 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV  296 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence            999999999999999999865            356777899999999999999999999999998  456667888888


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      ..        ..|+..+|+.....++++++....++...|.|+..+++|++|++.|+++++...++.....+......+.
T Consensus       297 ~~--------rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  297 NI--------RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK  368 (486)
T ss_pred             hc--------ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            87        9999999999999999999999999999999999999999999999999995544444444444333332


Q ss_pred             HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh-------H-HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG-------L-SQNNLAVLEAREGHIERASTYLQAA  652 (677)
Q Consensus       585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~-------~-~~~~la~~~~~~g~~~~A~~~~~~a  652 (677)
                      .-++.+.    ...+.+-....+.+--..+-+.+|...|+-.       + -+...|..|...+++.++.+...-.
T Consensus       369 kSkRkd~----ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  369 KSKRKDW----YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             HhhhhhH----HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            0000000    0000000111111222223344555555421       2 2456788888888888888776443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=7.1e-17  Score=144.88  Aligned_cols=207  Identities=16%  Similarity=0.080  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  471 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  471 (677)
                      .+...+|.-|...|++..|.+.++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607        472 SQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  550 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  550 (677)
                      +|++++|...|++++.. |.. ..+..+.++|.|..        +.|+.+.|...|+++++.+|+.+.....++..++..
T Consensus       116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal--------~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~  186 (250)
T COG3063         116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCAL--------KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA  186 (250)
T ss_pred             CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHh--------hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence            88888888888888764 322 34778888888887        888888888888888888888888888888888888


Q ss_pred             cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607        551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS  628 (677)
Q Consensus       551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~  628 (677)
                      |+|..|..++++...  .-+-..+.+.....+-.                   ..|+-+.+-++=.+.....|...+.
T Consensus       187 ~~y~~Ar~~~~~~~~--~~~~~A~sL~L~iriak-------------------~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         187 GDYAPARLYLERYQQ--RGGAQAESLLLGIRIAK-------------------RLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             ccchHHHHHHHHHHh--cccccHHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHHhCCCcHHH
Confidence            888888888888776  33333443333333333                   7888888877777777777776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.78  E-value=1.5e-16  Score=142.80  Aligned_cols=208  Identities=19%  Similarity=0.139  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      ..+...||.-|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++  .+++++.|..
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--GdVLNNYG~F  112 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--GDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--cchhhhhhHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999998  9999999999


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~  582 (677)
                      +.        .+|++++|...|++++.  ..+..+..|.++|.|..+.|+++.|..+|+++++  .+|+.+.....++..
T Consensus       113 LC--------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~  182 (250)
T COG3063         113 LC--------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARL  182 (250)
T ss_pred             HH--------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHH
Confidence            88        89999999999999985  3466778999999999999999999999999999  899999999999998


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                      ++                   ..|+|-.|..++++...-.+-..+.+.....+-...|+-+.|-++=.+.....|...+.
T Consensus       183 ~~-------------------~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         183 HY-------------------KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HH-------------------hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            88                   99999999999999888877788888888888899999999999988888899988764


Q ss_pred             H
Q psy16607        663 H  663 (677)
Q Consensus       663 ~  663 (677)
                      .
T Consensus       244 q  244 (250)
T COG3063         244 Q  244 (250)
T ss_pred             H
Confidence            3

>PLN02789 farnesyltranstransferase

Probab=99.77  E-value=2.1e-16  Score=157.77  Aligned_cols=234  Identities=13%  Similarity=0.058  Sum_probs=179.0

Q ss_pred             HHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH--H
Q psy16607        400 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY--D  476 (677)
Q Consensus       400 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~--~  476 (677)
                      ++...+++++|+..+.+++.++|.+..+|...+.++...| ++++++..++++++.+|.+..+|+.++.++...|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            3444566777777777777777777777777777777776 467777777777777777777777777777777663  5


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---cCH
Q psy16607        477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS---QQY  553 (677)
Q Consensus       477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~  553 (677)
                      +++.+++++++.+|.+  ..+|...+.++.        ..|+++++++++.++++.+|.+..+|+.++.++...   |.+
T Consensus       126 ~el~~~~kal~~dpkN--y~AW~~R~w~l~--------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        126 KELEFTRKILSLDAKN--YHAWSHRQWVLR--------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHHHHHHHHHHhCccc--HHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence            6777777888888777  777888887777        777788888888888888888888888887777665   223


Q ss_pred             ----HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccCCCC
Q psy16607        554 ----DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSH  625 (677)
Q Consensus       554 ----~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~  625 (677)
                          ++++.+..+++.  .+|++..+|..++.++.                   .    .++..+|+..+.+++..+|.+
T Consensus       196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~s  254 (320)
T PLN02789        196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFK-------------------DDKEALVSDPEVSSVCLEVLSKDSNH  254 (320)
T ss_pred             cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHh-------------------cCCcccccchhHHHHHHHhhcccCCc
Confidence                578888889998  89999999999999886                   5    456778999999999999999


Q ss_pred             hHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        626 GLSQNNLAVLEAREG------------------HIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       626 ~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                      +.++..|+.+|....                  ..++|..+++..-+.+|=-...|.
T Consensus       255 ~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~  311 (320)
T PLN02789        255 VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA  311 (320)
T ss_pred             HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence            999999999998642                  346788888888666775544443

>KOG0550|consensus

Probab=99.76  E-value=3.7e-17  Score=157.91  Aligned_cols=255  Identities=14%  Similarity=0.142  Sum_probs=172.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      ...|..+++..+|.+|+..|..+++..| +...|...+.++...+++++|....++.+++.|.........+.++...++
T Consensus        53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence            5678888888899999999999999888 788888899999999999999999999999998888888888999998888


Q ss_pred             hhHHHHHHHHHH-----H-------h------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607        407 MPMSVKYYKLIL-----K-------R------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  468 (677)
Q Consensus       407 ~~~A~~~~~~al-----~-------~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  468 (677)
                      ..+|.+.++..-     .       +      .|....+-..-+.++...|++++|...--..+++++.+.++++..|.+
T Consensus       133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~  212 (486)
T KOG0550|consen  133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC  212 (486)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence            888887776321     0       0      022233445557777778888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc--ccccCCCHHHHHHHHHHHHHcCCCc----HHHHHH
Q psy16607        469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS--TSVYNDQPEVALLFYRRLLQMGLYN----AELFNN  542 (677)
Q Consensus       469 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~--~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~  542 (677)
                      +...++.+.|+..|++++.++|+.......+.....+..+...  ..++.|++.+|.++|..+|.++|++    +.+|.+
T Consensus       213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            8888888888888888888887762222222222222111111  1344455555555555555555543    234445


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        543 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       543 la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      ++.+..++|+..+|+...+.++.  +++....++...|.|+.
T Consensus       293 ra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  293 RALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL  332 (486)
T ss_pred             hHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence            55555555555555555555555  45555555555555555

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.76  E-value=4.9e-15  Score=139.04  Aligned_cols=273  Identities=15%  Similarity=0.094  Sum_probs=236.1

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHc
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRL  370 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~  370 (677)
                      |.-++..++.++|++.|..+++.+ +........+|..+...|..+.|+..-+..+....     ...++..+|.-|+..
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a  120 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA  120 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence            444555789999999999999988 56666778999999999999999999998887654     456889999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVAL  445 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~  445 (677)
                      |-++.|...|....+....-..++..+..+|....+|++|++.-++..++.+..     ...++.++..+....+.+.|+
T Consensus       121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~  200 (389)
T COG2956         121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR  200 (389)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999988766677899999999999999999999999999998865     456788899999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607        446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF  525 (677)
Q Consensus       446 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~  525 (677)
                      ..+.++++.+|....+-..+|.++...|+|++|++.++.+++.+|+. .+.+...+..+|.        ..|+.++.+..
T Consensus       201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~--------~lg~~~~~~~f  271 (389)
T COG2956         201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYA--------QLGKPAEGLNF  271 (389)
T ss_pred             HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH--------HhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999987 6778888999998        99999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607        526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  581 (677)
Q Consensus       526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~  581 (677)
                      +.++.+..+.. .+-..++..-....-.+.|..++.+-+.  ..|.....+..+..
T Consensus       272 L~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~  324 (389)
T COG2956         272 LRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY  324 (389)
T ss_pred             HHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence            99999887654 4455566666667777888888888887  67876655554443

>PLN02789 farnesyltranstransferase

Probab=99.75  E-value=7.9e-16  Score=153.58  Aligned_cols=263  Identities=12%  Similarity=0.057  Sum_probs=208.5

Q ss_pred             CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHH
Q psy16607        338 GLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKL  416 (677)
Q Consensus       338 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~  416 (677)
                      ++|.+|..+|+.++                ...+++++|+..+.++++++|.+..+|..++.++..+| ++++++..+.+
T Consensus        34 ~~~~~a~~~~ra~l----------------~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~   97 (320)
T PLN02789         34 PEFREAMDYFRAVY----------------ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED   97 (320)
T ss_pred             HHHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence            55667777777654                34578889999999999999999999999999999998 67999999999


Q ss_pred             HHHhCcCCHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccch
Q psy16607        417 ILKRDATCMEAIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA  494 (677)
Q Consensus       417 al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  494 (677)
                      ++..+|++..+|...+.++...|+.  ++++.+++++++.+|.+..+|..++.++...|+++++++++.++++.+|.+  
T Consensus        98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--  175 (320)
T PLN02789         98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--  175 (320)
T ss_pred             HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--
Confidence            9999999999999999998888874  778999999999999999999999999999999999999999999999998  


Q ss_pred             HHHHHHHHHHHHHhhhcccccC---CC----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYN---DQ----PEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERA  563 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~---~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  563 (677)
                      ..+|+.++.+..        ..   |.    .++++.+..+++..+|++..+|+.++.++..    .++..+|+..+.++
T Consensus       176 ~sAW~~R~~vl~--------~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~  247 (320)
T PLN02789        176 NSAWNQRYFVIT--------RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV  247 (320)
T ss_pred             hhHHHHHHHHHH--------hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence            999999998875        33   22    3578889999999999999999999999988    45677899999998


Q ss_pred             HHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhh-HHhcCCCHHHHHHHHHHHHccCCCChHHHH
Q psy16607        564 LSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL-FIQGISDTRLAIQCLHLALSIDSSHGLSQN  630 (677)
Q Consensus       564 l~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~-~l~~~g~~~~A~~~~~~al~~~p~~~~~~~  630 (677)
                      +.  .+|..+.++..++.+|.... .+. .+...... .-......++|...++..-+.+|--...|.
T Consensus       248 ~~--~~~~s~~al~~l~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~  311 (320)
T PLN02789        248 LS--KDSNHVFALSDLLDLLCEGL-QPT-AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA  311 (320)
T ss_pred             hc--ccCCcHHHHHHHHHHHHhhh-ccc-hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence            88  78999999999999986100 000 00000000 000111346788888877666664444444

>KOG1127|consensus

Probab=99.75  E-value=5.4e-16  Score=164.37  Aligned_cols=344  Identities=13%  Similarity=0.050  Sum_probs=277.1

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CHHHHHHHHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT---DIEAFIRMIRVY  367 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~  367 (677)
                      +...+|.+|...-+...|..+|+++.+.++.....+ -..+..|....++++|....-.+-+..|   ....|..+|..|
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaa-aa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy  572 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAA-AASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY  572 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhH-HHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence            555678888777899999999999999996544444 6889999999999999999777777776   456777899999


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      ...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.-..+..+.+...+|.|.+|+..
T Consensus       573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----------------------------c-
Q psy16607        448 YRRLLQMGLYNA-------ELFNNLALCCFYSQQYDMVVTCFERALSLA-----------------------------L-  490 (677)
Q Consensus       448 ~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------------------p-  490 (677)
                      +...+.......       +.+...+..+.-.|-+.+|..+++++++..                             | 
T Consensus       653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~  732 (1238)
T KOG1127|consen  653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS  732 (1238)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc
Confidence            988876543332       333333333333444444444444432210                             0 


Q ss_pred             ---------------------ccc-----------------hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607        491 ---------------------NEN-----------------AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM  532 (677)
Q Consensus       491 ---------------------~~~-----------------~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~  532 (677)
                                           +++                 .+..|+++|..+.-.-...---+.+...|+.++.+++++
T Consensus       733 ~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L  812 (1238)
T KOG1127|consen  733 IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL  812 (1238)
T ss_pred             chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence                                 000                 023466666655410000000122345899999999999


Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607        533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI  612 (677)
Q Consensus       533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~  612 (677)
                      ..++...|+.||.+ ...|.+.-|..+|-+.+.  ..|.....|.++|.++.                   +..+++.|.
T Consensus       813 ~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l-------------------~n~d~E~A~  870 (1238)
T KOG1127|consen  813 CANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVL-------------------ENQDFEHAE  870 (1238)
T ss_pred             hhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEE-------------------ecccHHHhh
Confidence            99999999999999 677999999999999998  89999999999999998                   999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        613 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      ..|.++..++|.+...|...+.+....|+.-++...|....++..
T Consensus       871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~  915 (1238)
T KOG1127|consen  871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS  915 (1238)
T ss_pred             HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence            999999999999999999999999999999999999998655543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=7.4e-15  Score=137.87  Aligned_cols=293  Identities=15%  Similarity=0.124  Sum_probs=223.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-----VTIMTEMARIF  401 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~  401 (677)
                      +..|.-+.-..+.++|+..|..+++.+| ..++...+|.++.+.|..+.|+.+.+..++. |+-     .-++..+|.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence            4567777778889999999999999888 7889999999999999999999988776654 432     34678889999


Q ss_pred             HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHH
Q psy16607        402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFYSQQYD  476 (677)
Q Consensus       402 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~  476 (677)
                      +..|-++.|...|.........-..++-.|..+|....++++|++..++..++.+..     +..+..++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999988877666667888889999999999999999999988887765     345677888888888888


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhccCHHH
Q psy16607        477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDM  555 (677)
Q Consensus       477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~  555 (677)
                      .|...+.++++.+|++  ..+-..+|.+..        ..|+++.|++.++.+++.+|.. +++...|..||.+.|+.++
T Consensus       198 ~A~~~l~kAlqa~~~c--vRAsi~lG~v~~--------~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         198 RARELLKKALQADKKC--VRASIILGRVEL--------AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             HHHHHHHHHHhhCccc--eehhhhhhHHHH--------hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            8999999999988888  788888888888        8888999999998888888875 4677778888888898888


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q psy16607        556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  635 (677)
Q Consensus       556 A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  635 (677)
                      .+..+.++.+  ..++. .+-..++....                   ...-.+.|..++.+-+...|.....+ .+-..
T Consensus       268 ~~~fL~~~~~--~~~g~-~~~l~l~~lie-------------------~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~  324 (389)
T COG2956         268 GLNFLRRAME--TNTGA-DAELMLADLIE-------------------LQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDY  324 (389)
T ss_pred             HHHHHHHHHH--ccCCc-cHHHHHHHHHH-------------------HhhChHHHHHHHHHHHhhCCcHHHHH-HHHHh
Confidence            8888888887  33322 22233333333                   55566778888888888777643333 33222


Q ss_pred             HH---HcCCHHHHHHHHHHHHH
Q psy16607        636 EA---REGHIERASTYLQAAAA  654 (677)
Q Consensus       636 ~~---~~g~~~~A~~~~~~al~  654 (677)
                      ..   ..|...+.+..++.++.
T Consensus       325 ~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         325 HLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             hhccccccchhhhHHHHHHHHH
Confidence            22   23445566666665543

>KOG1840|consensus

Probab=99.74  E-value=2.1e-15  Score=156.78  Aligned_cols=241  Identities=15%  Similarity=0.159  Sum_probs=198.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----
Q psy16607        387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----  454 (677)
Q Consensus       387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  454 (677)
                      .|.-..+...++..|...|+|++|+..++++++.        .|.-......+|.+|...+++.+|+.+|++++.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4666677888999999999999999999999988        4444455556999999999999999999999985    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc-----c-chHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607        455 ----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-----E-NAADVWYNISHVAILNALSTSVYNDQPEVALL  524 (677)
Q Consensus       455 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~  524 (677)
                          +|....++.+++.+|...|++++|..++++++++...     . .....+.+++.++.        .++++++|+.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--------~~~~~Eea~~  346 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--------SMNEYEEAKK  346 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--------HhcchhHHHH
Confidence                2334578999999999999999999999999887533     1 23455667777776        8899999999


Q ss_pred             HHHHHHHcC--------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHhhcCC
Q psy16607        525 FYRRLLQMG--------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL------NENAADVWYNISHVAIITECSP  590 (677)
Q Consensus       525 ~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~p~~~~~~~~l~~~~~~~~~~p  590 (677)
                      ++++++++.        +.-+..+.++|.+|..+|+|++|.++|++++....      .+.....+..+|..|.      
T Consensus       347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~------  420 (508)
T KOG1840|consen  347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE------  420 (508)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH------
Confidence            999998542        23467889999999999999999999999998642      2233466778888888      


Q ss_pred             CCcccchhhhHHhcCCCHHHHHHHHHHHHcc----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSI----DS---SHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                                   +.+++.+|...|.++..+    .|   +....+.+|+.+|..+|++++|+++.++++.
T Consensus       421 -------------~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  421 -------------ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             -------------HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                         999999999999988765    23   3456789999999999999999999999985

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.72  E-value=3.5e-14  Score=147.92  Aligned_cols=306  Identities=13%  Similarity=-0.012  Sum_probs=185.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607        322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEM  397 (677)
Q Consensus       322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  397 (677)
                      +....+..+|..+...|+.+++...+.++.+..+    ..+.....+.++...|++++|...++++++.+|.+..++.. 
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-   82 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-   82 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence            3444556677777777777777777777666554    24455666777777777777777777777777777666554 


Q ss_pred             HHHHHHcCCh----hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607        398 ARIFEGLNNM----PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  473 (677)
Q Consensus       398 a~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  473 (677)
                      +..+...|++    ..+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++...|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            4444444333    333333333223455555666677777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC--cHHHHH---HHHHH
Q psy16607        474 QYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFN---NLALC  546 (677)
Q Consensus       474 ~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~  546 (677)
                      ++++|+.++++++...|.+  .....+..++.++.        ..|++++|+..|++++...|.  ......   .+...
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~--------~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  234 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL--------ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR  234 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH--------HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence            7777777777777766532  11234556677766        777777777777777655441  111111   11122


Q ss_pred             HHhccCHHHHHHHHHHHHHHh--hccc--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        547 CFYSQQYDMVVTCFERALSLA--LNEN--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       547 ~~~~g~~~~A~~~~~~al~~~--~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                      +...|....+..+ +.+....  ..+.  ........+.++.                   ..|+.++|...++......
T Consensus       235 ~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~-------------------~~~~~~~a~~~L~~l~~~~  294 (355)
T cd05804         235 LELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALA-------------------GAGDKDALDKLLAALKGRA  294 (355)
T ss_pred             HHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHh-------------------cCCCHHHHHHHHHHHHHHH
Confidence            2223322222222 1111100  1011  1111223444444                   8888888888887765533


Q ss_pred             CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        623 SS---------HGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       623 p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ..         ........+.++...|++++|+..+..++.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         295 SSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             hccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            22         23456678889999999999999999999865

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156|consensus

Probab=99.71  E-value=9.9e-14  Score=141.80  Aligned_cols=342  Identities=14%  Similarity=0.060  Sum_probs=265.3

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR  369 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~  369 (677)
                      ...+.|..+...|+-++|......++..++.+..-| ..+|.++....+|++|+++|+.++...| +..++.-++.+..+
T Consensus        43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw-Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW-HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hHHhccchhhcccchHHHHHHHHHHhccCcccchhH-HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            345667777888999999999999999997777777 6999999999999999999999999999 89999999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC---cCC-----HHHHHHHHHHHHhCCCh
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD---ATC-----MEAIACIGVNHFYNDQP  441 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~  441 (677)
                      +++++-....-.+.++..|.....|...+..+...|++..|....+...+..   |+.     .+.......++...|.+
T Consensus       122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~  201 (700)
T KOG1156|consen  122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL  201 (700)
T ss_pred             HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence            9999999999999999999999999999999999999999999888776654   322     34455566777888888


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--------H----hh
Q psy16607        442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI--------L----NA  509 (677)
Q Consensus       442 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~--------l----~~  509 (677)
                      ++|++.+..--...-+........+.++.+++++++|+..|...+..+|++  ...+..+-.++.        +    ..
T Consensus       202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn--~~Yy~~l~~~lgk~~d~~~~lk~ly~~  279 (700)
T KOG1156|consen  202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN--LDYYEGLEKALGKIKDMLEALKALYAI  279 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh--HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            888887766544444445566677899999999999999999999999987  433333322221        0    00


Q ss_pred             hcc-------------cccCC-CHHHHH-----------------------------HHHHHHH-------Hc-------
Q psy16607        510 LST-------------SVYND-QPEVAL-----------------------------LFYRRLL-------QM-------  532 (677)
Q Consensus       510 l~~-------------~~~~~-~~~~A~-----------------------------~~~~~al-------~~-------  532 (677)
                      +.+             .+-.| ++.+.+                             ...++.+       ..       
T Consensus       280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~  359 (700)
T KOG1156|consen  280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL  359 (700)
T ss_pred             HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence            000             00000 011110                             0112211       00       


Q ss_pred             -----CCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607        533 -----GLYNA--ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI  605 (677)
Q Consensus       533 -----~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~  605 (677)
                           .|...  ..++.++.-+...|+++.|..+++.|+.  ..|...+.+...+.++.                   ..
T Consensus       360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~k-------------------H~  418 (700)
T KOG1156|consen  360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFK-------------------HA  418 (700)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHH-------------------hc
Confidence                 02222  2345678888999999999999999999  88999999999999998                   99


Q ss_pred             CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      |++++|...++++.+++-.+...-..-|....+.++.++|.+...+.-+..
T Consensus       419 G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  419 GLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             CChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            999999999999999987766555578888899999999999887765544

>KOG1840|consensus

Probab=99.70  E-value=5.2e-15  Score=153.94  Aligned_cols=237  Identities=14%  Similarity=0.111  Sum_probs=193.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcC----
Q psy16607        321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ--------FTDIEAF-IRMIRVYIRLDQPIRAIDIGRNALDCY----  387 (677)
Q Consensus       321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~----  387 (677)
                      +........++..|..+|+|+.|+..|+.++..        .+..... ..+|.+|..++++.+|+.+|++++.+.    
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            444445567999999999999999999999987        3444444 459999999999999999999998753    


Q ss_pred             ----CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607        388 ----PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA--------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  455 (677)
Q Consensus       388 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  455 (677)
                          |.-..++.++|.+|...|++++|..++++++++..        .-...+..++.++..++++++|..++++++++.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                33456788999999999999999999999988732        235567788999999999999999999998753


Q ss_pred             -----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc------chHHHHHHHHHHHHHhhhcccccCCCHHH
Q psy16607        456 -----L---YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE------NAADVWYNISHVAILNALSTSVYNDQPEV  521 (677)
Q Consensus       456 -----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~  521 (677)
                           +   .-+..+.++|.+|..+|++++|.+.|++++.+....      .+...+.+++..+.        +.+++.+
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~--------~~k~~~~  427 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE--------ELKKYEE  427 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH--------Hhcccch
Confidence                 2   335678999999999999999999999999876322      23566778888887        8899999


Q ss_pred             HHHHHHHHHHc-------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        522 ALLFYRRLLQM-------GLYNAELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       522 A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      |...|.+++.+       .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus       428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99998888743       344556889999999999999999999999986

>KOG2376|consensus

Probab=99.69  E-value=7.2e-13  Score=134.18  Aligned_cols=406  Identities=13%  Similarity=0.030  Sum_probs=253.6

Q ss_pred             HHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCC
Q psy16607        124 VDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTA  203 (677)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (677)
                      .-+-+.++|++|+..|.++|..+|++..+..-|.-+|.+...+++.--.             +..               
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~-------------ikk---------------   71 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL-------------IKK---------------   71 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH-------------HHh---------------
Confidence            4456779999999999999999999999999999999888766664210             000               


Q ss_pred             CCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhcCcccccccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhh
Q psy16607        204 PALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAK  283 (677)
Q Consensus       204 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (677)
                               ..+.                                   .                ....|. .       
T Consensus        72 ---------~~~~-----------------------------------~----------------~~~~~~-f-------   83 (652)
T KOG2376|consen   72 ---------NGAL-----------------------------------L----------------VINSFF-F-------   83 (652)
T ss_pred             ---------cchh-----------------------------------h----------------hcchhh-H-------
Confidence                     0000                                   0                000000 0       


Q ss_pred             hhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHH
Q psy16607        284 YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIR  362 (677)
Q Consensus       284 ~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~  362 (677)
                                --+||.++.+..++|+..++-   .+ ..+...+...|.+++++|+|++|...|+..++.+. +.+....
T Consensus        84 ----------EKAYc~Yrlnk~Dealk~~~~---~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r  149 (652)
T KOG2376|consen   84 ----------EKAYCEYRLNKLDEALKTLKG---LD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR  149 (652)
T ss_pred             ----------HHHHHHHHcccHHHHHHHHhc---cc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence                      135678889999999999992   22 22344457889999999999999999999988664 3222222


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-------CC--------HH
Q psy16607        363 MIRVYIRLDQPIRAIDIGRNALDCYPN-EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-------TC--------ME  426 (677)
Q Consensus       363 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~--------~~  426 (677)
                      ........  -..+ . ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++++..       .+        ..
T Consensus       150 ~nl~a~~a--~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~  225 (652)
T KOG2376|consen  150 ANLLAVAA--ALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP  225 (652)
T ss_pred             HHHHHHHH--hhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence            11111110  0011 1 2333334443 567888889999999999999999988854321       11        23


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH--------------------------------------------
Q psy16607        427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF--------------------------------------------  462 (677)
Q Consensus       427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------  462 (677)
                      ....++.++..+|+.++|..+|...++.+|.+....                                            
T Consensus       226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q  305 (652)
T KOG2376|consen  226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ  305 (652)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456788888889999999998888888766543211                                            


Q ss_pred             -----HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-
Q psy16607        463 -----NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-  536 (677)
Q Consensus       463 -----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-  536 (677)
                           .+.+.+.+..+.-+.+.+...+.-...|...+.......-.+          ....+.+|.+.+....+.+|.+ 
T Consensus       306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~----------~~~~~~ka~e~L~~~~~~~p~~s  375 (652)
T KOG2376|consen  306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKV----------REKKHKKAIELLLQFADGHPEKS  375 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH----------HHHHHhhhHHHHHHHhccCCchh
Confidence                 111222222222222222222211122221111111111111          2236788888998888888887 


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      ..+...++.+....|+++.|+..+...+..-     .-...+.+-..+-..+.                   +.++-+-|
T Consensus       376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~-------------------~~~~~~~a  436 (652)
T KOG2376|consen  376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYY-------------------KIKDNDSA  436 (652)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHH-------------------hccCCccH
Confidence            6678889999999999999999998433210     00111222222223333                   55555445


Q ss_pred             HHHHHHHHc-------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        612 IQCLHLALS-------IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       612 ~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      ...+.+++.       ..+.....+...+....+.|+.++|...+++.++.+|++.+++..+...|..
T Consensus       437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~  504 (652)
T KOG2376|consen  437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR  504 (652)
T ss_pred             HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence            555555443       3333445667778888888999999999999999999999999888877754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=1.9e-13  Score=142.41  Aligned_cols=307  Identities=10%  Similarity=-0.045  Sum_probs=218.6

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHH
Q psy16607        290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFR--DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRV  366 (677)
Q Consensus       290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~  366 (677)
                      ++...++.++...|+++.+...+.++.+..+.+  ........+.++...|++++|...+++++...| +..++.. +..
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~   85 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence            355566677777899999999999988777633  233446778899999999999999999999999 5555553 444


Q ss_pred             HHHcC----ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChH
Q psy16607        367 YIRLD----QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE  442 (677)
Q Consensus       367 ~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  442 (677)
                      +...|    ....+...+......+|.....+..+|.++...|++++|+..++++++..|++..++..+|.++...|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~  165 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence            44444    44445555444445667777888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH-HHHHHHhhhcccccCC
Q psy16607        443 VALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI-SHVAILNALSTSVYND  517 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l-~~~~~l~~l~~~~~~~  517 (677)
                      +|+.++++++...|..+    ..+..++.++...|++++|+..|++++...|........... ...+. ..     ..|
T Consensus       166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-----~~g  239 (355)
T cd05804         166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR-LE-----LAG  239 (355)
T ss_pred             HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH-HH-----hcC
Confidence            99999999999876443    346689999999999999999999998766622112111122 11111 00     223


Q ss_pred             CHHHHHHH--H-HHHHHcCC--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHH
Q psy16607        518 QPEVALLF--Y-RRLLQMGL--YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-------NAADVWYNISHVAII  585 (677)
Q Consensus       518 ~~~~A~~~--~-~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-------~~~~~~~~l~~~~~~  585 (677)
                      ....+..+  . .......+  .........+.++...|+.++|...++.........       .........+.++. 
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~-  318 (355)
T cd05804         240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF-  318 (355)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH-
Confidence            22222222  1 11111112  122333467888899999999999999887643221       11233444555555 


Q ss_pred             hhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       586 ~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                                        ..|++++|+..+..++...
T Consensus       319 ------------------~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         319 ------------------AEGNYATALELLGPVRDDL  337 (355)
T ss_pred             ------------------HcCCHHHHHHHHHHHHHHH
Confidence                              9999999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1915|consensus

Probab=99.65  E-value=3e-12  Score=126.10  Aligned_cols=330  Identities=15%  Similarity=0.114  Sum_probs=204.8

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      +......|..++++++..-|.-+..| +.....-..+|+...|.+.|++-+.-.|+..+|......-.+.+..+.|..+|
T Consensus       119 knk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY  197 (677)
T KOG1915|consen  119 KNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY  197 (677)
T ss_pred             hhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455556666666666555555555 34444445556666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHHHHHHHHHhCCChHHHHHHH---------
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFY---------  448 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~---------  448 (677)
                      ++-+-.+| +...|...+..-.+.|+..-|..+|+++++.-.++.   ..+...|..-..+..++.|..+|         
T Consensus       198 erfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk  276 (677)
T KOG1915|consen  198 ERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK  276 (677)
T ss_pred             HHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            66666665 556677777777788888888888888876644321   11222222222233333333333         


Q ss_pred             -----------------------------------HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc
Q psy16607        449 -----------------------------------RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN  493 (677)
Q Consensus       449 -----------------------------------~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  493 (677)
                                                         +..++.+|.+-++|+..-.+-...|+.+.-.+.|++|+...|.-.
T Consensus       277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~  356 (677)
T KOG1915|consen  277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS  356 (677)
T ss_pred             ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence                                               334445566667888888888888999999999999998777541


Q ss_pred             hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q psy16607        494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN  569 (677)
Q Consensus       494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  569 (677)
                      .-..|.....+++-..+...+...+.+.+.+.|+.++++-|..    +.+|...|....++.+...|.+.+-.|+.  ..
T Consensus       357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~c  434 (677)
T KOG1915|consen  357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KC  434 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cC
Confidence            1222322222221111112246789999999999999988854    56777777777788888888888887777  45


Q ss_pred             cchH--HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy16607        570 ENAA--DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  647 (677)
Q Consensus       570 p~~~--~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  647 (677)
                      |.+.  ..+..+-.                      ++++++.....|++-++..|.+..+|...|.+-..+|+.+.|..
T Consensus       435 PK~KlFk~YIelEl----------------------qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa  492 (677)
T KOG1915|consen  435 PKDKLFKGYIELEL----------------------QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA  492 (677)
T ss_pred             CchhHHHHHHHHHH----------------------HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence            5443  22222222                      55666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhC
Q psy16607        648 YLQAAAASS  656 (677)
Q Consensus       648 ~~~~al~~~  656 (677)
                      +|+-|++..
T Consensus       493 ifelAi~qp  501 (677)
T KOG1915|consen  493 IFELAISQP  501 (677)
T ss_pred             HHHHHhcCc
Confidence            666665543

>KOG3785|consensus

Probab=99.64  E-value=2.2e-13  Score=129.18  Aligned_cols=250  Identities=12%  Similarity=0.039  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy16607        290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIR  369 (677)
Q Consensus       290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~  369 (677)
                      -...++++++++.|+|++|+..|.-+...+..+...+ .++|.|++..|.|.+|...-.++-+   ++-....+-.+..+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~-vnLAcc~FyLg~Y~eA~~~~~ka~k---~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG-VNLACCKFYLGQYIEAKSIAEKAPK---TPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc-hhHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHH
Confidence            3566778888888888888888888877664444444 6888888888888888776666532   22222223333344


Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  449 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  449 (677)
                      .++-++-...- ..++-   ..+-...++.+++..-.|++|++.|++++..+|+....-..++.+|.++.-++-+.+++.
T Consensus       134 lndEk~~~~fh-~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  134 LNDEKRILTFH-SSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             hCcHHHHHHHH-HHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            55544333332 22221   224456677888888889999999999999999888788889999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------HHhhhccc--chHHHHH
Q psy16607        450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER----------------------------ALSLALNE--NAADVWY  499 (677)
Q Consensus       450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------------------al~~~p~~--~~~~~~~  499 (677)
                      --+...|+++.+.+..+...++.=.-..|....+.                            +++.-|.-  ..+++..
T Consensus       210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl  289 (557)
T KOG3785|consen  210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL  289 (557)
T ss_pred             HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence            99999999998888887777664222222211111                            12222211  1345566


Q ss_pred             HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607        500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       500 ~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      ++...|.        .+++..+|+...+   +++|..|.-+...|.+....|+--...+
T Consensus       290 NL~iYyL--------~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSre  337 (557)
T KOG3785|consen  290 NLIIYYL--------NQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSRE  337 (557)
T ss_pred             hheeeec--------ccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence            6666665        8888888887765   4688888888888888888776543333

>KOG1915|consensus

Probab=99.64  E-value=8e-12  Score=123.12  Aligned_cols=349  Identities=14%  Similarity=0.143  Sum_probs=260.9

Q ss_pred             HHHHHHHHHHHHhcc--cCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy16607        288 KTVAKYLFEYLYHHE--NDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIR  365 (677)
Q Consensus       288 ~~~a~~l~~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~  365 (677)
                      |.+-..+..++|+..  |+..-|.++|++-+...|....|  ......-.+.+..+.|...|++.+-..|++..|...+.
T Consensus       138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW--~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar  215 (677)
T KOG1915|consen  138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAW--LSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR  215 (677)
T ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH
Confidence            333444555555443  88888888888888887643333  45556666677788888888888877788888888888


Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCChhHHHHH-----------------------------
Q psy16607        366 VYIRLDQPIRAIDIGRNALDCYPNEVT---IMTEMARIFEGLNNMPMSVKY-----------------------------  413 (677)
Q Consensus       366 ~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~-----------------------------  413 (677)
                      .-.+.|+..-|...|.++++...++..   .+...|..-..+..++.|.-.                             
T Consensus       216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd  295 (677)
T KOG1915|consen  216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD  295 (677)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence            888888877777777777765544322   122222222233333333333                             


Q ss_pred             ---------------HHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH---------HHHHHHHH-
Q psy16607        414 ---------------YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---------LFNNLALC-  468 (677)
Q Consensus       414 ---------------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~la~~-  468 (677)
                                     |++.++.+|.+.++|+..-.+....|+.+.-.+.|++++...|...+         +|.+.+.. 
T Consensus       296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye  375 (677)
T KOG1915|consen  296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE  375 (677)
T ss_pred             hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Confidence                           44445556778889999999999999999999999999998876432         23333322 


Q ss_pred             HHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        469 CFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  546 (677)
Q Consensus       469 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  546 (677)
                      -....+.+.+.+.|+.++++-|..  .++..|...+...+        .+.+...|.+.+-.++...|.+ ..+.....+
T Consensus       376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI--------Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIel  446 (677)
T KOG1915|consen  376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI--------RQLNLTGARKILGNAIGKCPKD-KLFKGYIEL  446 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH--------HHcccHHHHHHHHHHhccCCch-hHHHHHHHH
Confidence            235688999999999999999987  67888999898888        8999999999999999999975 455566677


Q ss_pred             HHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-
Q psy16607        547 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-  625 (677)
Q Consensus       547 ~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-  625 (677)
                      -.++++++....+|++-++  ..|.+..+|...|.+-.                   .+|+.+.|...|+-|+....-+ 
T Consensus       447 ElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~-------------------~LgdtdRaRaifelAi~qp~ldm  505 (677)
T KOG1915|consen  447 ELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELET-------------------SLGDTDRARAIFELAISQPALDM  505 (677)
T ss_pred             HHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHH-------------------HhhhHHHHHHHHHHHhcCccccc
Confidence            7889999999999999999  89999999999999988                   9999999999999999865443 


Q ss_pred             hH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        626 GL-SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       626 ~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      ++ .|-.....-...|.++.|..+|++.++..+... .|...|..
T Consensus       506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f  549 (677)
T KOG1915|consen  506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF  549 (677)
T ss_pred             HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence            32 344455566778999999999999999987765 66665543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=1.5e-14  Score=128.05  Aligned_cols=128  Identities=15%  Similarity=0.025  Sum_probs=120.8

Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHH
Q psy16607        523 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFI  602 (677)
Q Consensus       523 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l  602 (677)
                      ...++++++.+|++   +..+|.++...|++++|+.+|++++.  .+|.+..+|..+|.++.                  
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~------------------   69 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWM------------------   69 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHH------------------
Confidence            46788999999875   66789999999999999999999999  89999999999999999                  


Q ss_pred             hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                       ..|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++++.|+++..+.+++.+....+
T Consensus        70 -~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         70 -MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             -HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence             99999999999999999999999999999999999999999999999999999999999999998876654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=1.3e-11  Score=120.07  Aligned_cols=290  Identities=13%  Similarity=0.049  Sum_probs=229.9

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcCCh
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLDQP  373 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~  373 (677)
                      |..-+..|+|.+|.+...+.-+.. +.....+..-+.+-...|+++.|-.++.++-+..  ++.......+.+....|++
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~  169 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY  169 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence            334455799999999999988777 3444444566788888999999999999999984  4778889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH---HHHHHH--HHHhCCCh---HHHH
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA---IACIGV--NHFYNDQP---EVAL  445 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~--~~~~~g~~---~~A~  445 (677)
                      +.|.....++++..|.++.++.....+|.+.|++.+......+.-+..--+.+-   +-+.+.  ++.+..+-   +.-.
T Consensus       170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~  249 (400)
T COG3071         170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK  249 (400)
T ss_pred             hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            999999999999999999999999999999999999999998877654432211   111111  11222222   2222


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607        446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF  525 (677)
Q Consensus       446 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~  525 (677)
                      .+++..-..-..++.+...++.-+..+|++++|.+..+.+++..-++   .....++.          +..++++.=++.
T Consensus       250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~----------l~~~d~~~l~k~  316 (400)
T COG3071         250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR----------LRPGDPEPLIKA  316 (400)
T ss_pred             HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh----------cCCCCchHHHHH
Confidence            24444333444568888899999999999999999999999987764   32222222          267999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607        526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI  605 (677)
Q Consensus       526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~  605 (677)
                      .++.++..|+++..+..||..+.+.+.|.+|..+|+.+++  . ......+..+|.++.                   +.
T Consensus       317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~-~~s~~~~~~la~~~~-------------------~~  374 (400)
T COG3071         317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--L-RPSASDYAELADALD-------------------QL  374 (400)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--c-CCChhhHHHHHHHHH-------------------Hc
Confidence            9999999999999999999999999999999999999997  3 345667888999998                   99


Q ss_pred             CCHHHHHHHHHHHHcc
Q psy16607        606 SDTRLAIQCLHLALSI  621 (677)
Q Consensus       606 g~~~~A~~~~~~al~~  621 (677)
                      |+..+|.+.+++++.+
T Consensus       375 g~~~~A~~~r~e~L~~  390 (400)
T COG3071         375 GEPEEAEQVRREALLL  390 (400)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            9999999999998853

>KOG2376|consensus

Probab=99.60  E-value=2.8e-11  Score=122.86  Aligned_cols=456  Identities=11%  Similarity=0.043  Sum_probs=270.4

Q ss_pred             CCCCCCCCCcccchHHHH-HHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhccccccccccccccchhhhhccch
Q psy16607          1 MSTPGSAPTATVDSMFYA-VDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDDLEAEEEGIADSVLDTN   79 (677)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (677)
                      ||.-++--.+.+..+|.- ..+.+.++|++|...|++||.+.|++..+.+-|.-|+++...+++.-       .+ |.-+
T Consensus         1 ms~~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL-------k~-ikk~   72 (652)
T KOG2376|consen    1 MSKEKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL-------KL-IKKN   72 (652)
T ss_pred             CCCcccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH-------HH-HHhc
Confidence            444333333333444443 45678899999999999999999999999999999999866665532       01 1111


Q ss_pred             hhhccCCCCcccccccCccCcccccccCCCCCCCccccChHHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhh
Q psy16607         80 TIATAARPGTSLKTAANDQQPISTSVMSTPGSAPTATVDSMFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRS  159 (677)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~  159 (677)
                             ++....+                       .=.|-.|.++|+.|+.|+|+..++   -.++.+.....++++.
T Consensus        73 -------~~~~~~~-----------------------~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQv  119 (652)
T KOG2376|consen   73 -------GALLVIN-----------------------SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQV  119 (652)
T ss_pred             -------chhhhcc-----------------------hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHH
Confidence                   1211110                       011568999999999999999998   6677778888999999


Q ss_pred             hhhhhhhhcchhccccccccccCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhhhc
Q psy16607        160 LTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLK  239 (677)
Q Consensus       160 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  239 (677)
                      +-+.+.+|++-.-...+..--.++                                                  .+.-++
T Consensus       120 lYrl~~ydealdiY~~L~kn~~dd--------------------------------------------------~d~~~r  149 (652)
T KOG2376|consen  120 LYRLERYDEALDIYQHLAKNNSDD--------------------------------------------------QDEERR  149 (652)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCch--------------------------------------------------HHHHHH
Confidence            999988887522111110000000                                                  000000


Q ss_pred             CcccccccCCCcchhhhhhhhcccccccCCCccchhhhhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhC
Q psy16607        240 TPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKAC  319 (677)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~  319 (677)
                                     ..+...+..+     ...........+.  .....+....  -++...|+|.+|+++++++++.+
T Consensus       150 ---------------~nl~a~~a~l-----~~~~~q~v~~v~e--~syel~yN~A--c~~i~~gky~qA~elL~kA~~~~  205 (652)
T KOG2376|consen  150 ---------------ANLLAVAAAL-----QVQLLQSVPEVPE--DSYELLYNTA--CILIENGKYNQAIELLEKALRIC  205 (652)
T ss_pred             ---------------HHHHHHHHhh-----hHHHHHhccCCCc--chHHHHHHHH--HHHHhcccHHHHHHHHHHHHHHH
Confidence                           0000000000     0001111111221  1222222222  22445799999999999995432


Q ss_pred             c-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcC---Ch-H-HHHHH
Q psy16607        320 E-------FR-------DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLD---QP-I-RAIDI  379 (677)
Q Consensus       320 p-------~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g---~~-~-~A~~~  379 (677)
                      .       .+       ...+...++.++..+|+-++|...|...++.++ +........+-+....   ++ + .++..
T Consensus       206 ~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~  285 (652)
T KOG2376|consen  206 REKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKS  285 (652)
T ss_pred             HHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHH
Confidence            1       11       123456788999999999999999999999887 4333222222222111   11 1 22223


Q ss_pred             HHHHHHcCCC----------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607        380 GRNALDCYPN----------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  449 (677)
Q Consensus       380 ~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  449 (677)
                      ++......++          -..++.+.+.+.+..+.-+.+.+...+.-...|..............+...+.++.+++.
T Consensus       286 k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~  365 (652)
T KOG2376|consen  286 KKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLL  365 (652)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3322222221          123455666666666766666665554444444432222223333333337889999999


Q ss_pred             HHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH--------HHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607        450 RLLQMGLYN-AELFNNLALCCFYSQQYDMVVTCFER--------ALSLALNENAADVWYNISHVAILNALSTSVYNDQPE  520 (677)
Q Consensus       450 ~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~  520 (677)
                      ...+.+|.+ ..+...++.+....|+++.|+..+..        ..+....   +.+...+-..+.        ..++.+
T Consensus       366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~--------~~~~~~  434 (652)
T KOG2376|consen  366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---PGTVGAIVALYY--------KIKDND  434 (652)
T ss_pred             HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHH--------hccCCc
Confidence            999999987 67888899999999999999999993        3333222   222222222333        455555


Q ss_pred             HHHHHHHHHH-------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        521 VALLFYRRLL-------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       521 ~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      .|...+..++       .-.+.....+...+..-.+.|+-++|...+++.++  .+|++.++...+...|.
T Consensus       435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~  503 (652)
T KOG2376|consen  435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYA  503 (652)
T ss_pred             cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHH
Confidence            5555555555       33333344566677777888999999999999999  89999999999888874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.58  E-value=3e-13  Score=131.89  Aligned_cols=104  Identities=11%  Similarity=0.088  Sum_probs=59.7

Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH---HH
Q psy16607        389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LF  462 (677)
Q Consensus       389 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~  462 (677)
                      ..+..++.+|..+...|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++..|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3455556666666666666666666666666655543   35556666666666666666666666666555443   45


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHhhhccc
Q psy16607        463 NNLALCCFYS--------QQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       463 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~  492 (677)
                      +.+|.++...        |++++|+..|++++...|++
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            5555555543        45555555555555555554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3785|consensus

Probab=99.58  E-value=2.5e-12  Score=122.09  Aligned_cols=331  Identities=12%  Similarity=-0.013  Sum_probs=230.5

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhhCc-----------CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        295 FEYLYHHENDVASAMDLAVESTKACE-----------FR--------------DWWWKVQLGKCYFSLGLIREAQQQFNS  349 (677)
Q Consensus       295 ~~~~~~~~g~~~~A~~~~~~a~~~~p-----------~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~  349 (677)
                      ++-+++-.|.|.+|..+..++.+..-           .+              ...-...+|.+++..-.|++|+..|.+
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr  176 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR  176 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44556667999999998888643210           00              011113467777788889999999999


Q ss_pred             HHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHH------------
Q psy16607        350 ALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKL------------  416 (677)
Q Consensus       350 al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------------  416 (677)
                      ++..+| ....-..++.||+++.-++-+.+.+.--+...|+.+.+...++..+++.=+-..|....+.            
T Consensus       177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~  256 (557)
T KOG3785|consen  177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI  256 (557)
T ss_pred             HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence            999888 4556678899999999999999999999999999888877777666554222122211111            


Q ss_pred             ----------------HHHhCcC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q psy16607        417 ----------------ILKRDAT----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD  476 (677)
Q Consensus       417 ----------------al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  476 (677)
                                      +++.-|.    -+++..+++..|..+++.++|+.+.+   .++|..|.-+...|.++...|+--
T Consensus       257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~  333 (557)
T KOG3785|consen  257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQET  333 (557)
T ss_pred             HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhc
Confidence                            1222222    36778888888999999999988776   468888888888999988888765


Q ss_pred             HHHHHHHHHHh---hhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607        477 MVVTCFERALS---LALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  549 (677)
Q Consensus       477 ~A~~~~~~al~---~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  549 (677)
                      ...+.++-+-+   +-...    ....-...++.++.        -..++++.+.++...-....++....++++.++..
T Consensus       334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF--------L~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a  405 (557)
T KOG3785|consen  334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF--------LSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA  405 (557)
T ss_pred             CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence            55444443322   11111    00112233333333        45678888888877777777788888999999999


Q ss_pred             ccCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-hH
Q psy16607        550 SQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-GL  627 (677)
Q Consensus       550 ~g~~~~A~~~~~~al~~~~~-p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-~~  627 (677)
                      .|.|.+|.+.|-+.-.  .+ .+.......++.||.                   ..++.+-|...+-+.-  .|.. -.
T Consensus       406 tgny~eaEelf~~is~--~~ikn~~~Y~s~LArCyi-------------------~nkkP~lAW~~~lk~~--t~~e~fs  462 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISG--PEIKNKILYKSMLARCYI-------------------RNKKPQLAWDMMLKTN--TPSERFS  462 (557)
T ss_pred             hcChHHHHHHHhhhcC--hhhhhhHHHHHHHHHHHH-------------------hcCCchHHHHHHHhcC--CchhHHH
Confidence            9999999999988755  33 234455667899999                   9999999988775531  2222 23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        628 SQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       628 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      .+..++..+++.+.+--|.+.|...-.++|.-
T Consensus       463 LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  463 LLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            45567888889999999999998888888754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.56  E-value=3.9e-13  Score=131.04  Aligned_cols=188  Identities=11%  Similarity=-0.026  Sum_probs=146.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HH
Q psy16607        322 RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D---IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IM  394 (677)
Q Consensus       322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~  394 (677)
                      .....++.+|..++..|++++|+..|++++...| +   ..+++.+|.++...|++++|+..++++++.+|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3455568899999999999999999999999887 3   367899999999999999999999999999987765   68


Q ss_pred             HHHHHHHHHc--------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607        395 TEMARIFEGL--------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA  466 (677)
Q Consensus       395 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  466 (677)
                      +.+|.++...        |++++|++.|++++..+|++..++..+..+....    ..             .......+|
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~~~a  173 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKELYVA  173 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHHHHH
Confidence            8889988876        7888999999999999998765543332221110    00             012235678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        467 LCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      .++...|++.+|+..|++++...|+. ....+++.+|.++.        ..|++++|..+++.+....|
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~--------~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL--------KLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCC
Confidence            88889999999999999999887764 34688889999988        88999999888877766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=5.1e-11  Score=125.98  Aligned_cols=132  Identities=9%  Similarity=0.075  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      +++.++..|...|++++|+++.++++...|..++.+...|.++...|++.+|.+.++.+..+++.+-.+....+..+.+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhhhccc-----chHHHHH--HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607        473 QQYDMVVTCFERALSLALNE-----NAADVWY--NISHVAILNALSTSVYNDQPEVALLFYRRLLQM  532 (677)
Q Consensus       473 g~~~~A~~~~~~al~~~p~~-----~~~~~~~--~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~  532 (677)
                      |+.++|...+......+.+.     ...-.|+  ..|.++.        +.|++..|+..|..+.+.
T Consensus       276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~--------r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL--------RQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHH
Confidence            88888888877765544211     1122343  3355555        888999998888877754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=1.9e-13  Score=120.97  Aligned_cols=122  Identities=14%  Similarity=0.030  Sum_probs=60.2

Q ss_pred             HHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH
Q psy16607        346 QFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM  425 (677)
Q Consensus       346 ~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  425 (677)
                      .|+++++.+|+.  +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|.++
T Consensus        15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            344444444421  333444445555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      .+++.+|.++...|++++|+..|++++...|+++..+..++.+.
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            55555555555555555555555555555555555444444443

>KOG1130|consensus

Probab=99.52  E-value=3.9e-13  Score=129.91  Aligned_cols=306  Identities=14%  Similarity=0.118  Sum_probs=187.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCcHHHHHHH
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY------PNEVTIMTEM  397 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l  397 (677)
                      .-|.-+++.|++...+.+|+.+++...     -..+|..+|.+|..+++|.+|+++...-+.+.      -......-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            445666777777777777777777654     23456667777777777777766543322111      1122334455


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhCcC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607        398 ARIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  471 (677)
Q Consensus       398 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  471 (677)
                      |.++.-+|.|++|+.+..+-+.+...      ...+++++|.+|...|+.-.-..-    -+......++          
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev----------  167 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEV----------  167 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHH----------
Confidence            66666666666666655554433221      234555555555555432110000    0000000000          


Q ss_pred             cCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC------cHHHHH
Q psy16607        472 SQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY------NAELFN  541 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~  541 (677)
                      ...++.|+++|..-+++....    ....++-++|..|        +-.|+++.|+..-+.-+.+...      .-.++.
T Consensus       168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTy--------YlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s  239 (639)
T KOG1130|consen  168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY--------YLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS  239 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCcee--------eeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence            011334555555554443221    0122334444444        4899999999988776654332      235788


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607        542 NLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL  617 (677)
Q Consensus       542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~  617 (677)
                      ++|.++.-.|+++.|+++|++.+.++..-    ..+..-+.+|..|.                   -..++++|+.++.+
T Consensus       240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-------------------ll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-------------------LLKEVQKAITYHQR  300 (639)
T ss_pred             ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-------------------HHHHHHHHHHHHHH
Confidence            99999999999999999999988765432    33466788999888                   88999999999999


Q ss_pred             HHccCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHhcCC
Q psy16607        618 ALSIDS------SHGLSQNNLAVLEAREGHIERASTYLQAAAASS-----PY-LYETHYNQAVISNLVSV  675 (677)
Q Consensus       618 al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~G~  675 (677)
                      -+.+..      ....+++.||..+-..|..++|+.+.++.+++.     |. ...+..|+......+|.
T Consensus       301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            877643      235688999999999999999999988887753     22 23466777776666653

>KOG1130|consensus

Probab=99.52  E-value=3.9e-13  Score=129.96  Aligned_cols=313  Identities=15%  Similarity=0.131  Sum_probs=200.1

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFR---DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAF  360 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~  360 (677)
                      -..+-|.-+++.|+++..+.+|+.+++.....   ...+|..+|.+|+..++|++|+++-..=+.+..       ....-
T Consensus        19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss   98 (639)
T KOG1130|consen   19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS   98 (639)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence            34455666788999999999999999887422   224567899999999999999987655443221       45667


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPN------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      -++|.++...|.|++|+.+..+-+.+...      ...+++++|.+|...|+.-.-..--+    ......++       
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee----~g~f~~ev-------  167 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE----KGAFNAEV-------  167 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh----cccccHHH-------
Confidence            78999999999999999999887765422      35689999999998876211000000    00000000       


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHH
Q psy16607        435 HFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHV  504 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~  504 (677)
                         ...++.|.++|..-+++...      ...++-++|..|+.+|+|+.|+...+.-+.+....    ....++.++|.+
T Consensus       168 ---~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~  244 (639)
T KOG1130|consen  168 ---TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC  244 (639)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence               01122333333333332111      12345566666666666666666655554443321    123456667777


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHH----cCC--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQ----MGL--YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAAD  574 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~  574 (677)
                      ++        -.|+++.|+++|+..+.    +..  ..+...+.||..|.-.+++.+||.++.+-+.++..-    ....
T Consensus       245 hi--------flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R  316 (639)
T KOG1130|consen  245 HI--------FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR  316 (639)
T ss_pred             hh--------hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            76        67777777777776652    222  234567889999999999999999998877654322    3346


Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC----CC--ChHHHHHHHHHHHHcCCHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID----SS--HGLSQNNLAVLEAREGHIER  644 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~la~~~~~~g~~~~  644 (677)
                      +.+.+|..+.                   .+|..++|+.+.++.+++.    ..  ...+..++.......|..+.
T Consensus       317 acwSLgna~~-------------------alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  317 ACWSLGNAFN-------------------ALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHHHHH-------------------hhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            6778888887                   8999999998888777642    11  22455666666666665443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.52  E-value=4.9e-11  Score=126.14  Aligned_cols=297  Identities=12%  Similarity=0.062  Sum_probs=214.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-  405 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-  405 (677)
                      .....++...|++++|+..+++....-. ....+...|.++.++|++++|...|+.+++.+|++...+..+..+..... 
T Consensus         8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen    8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence            5667788888999999999888666554 56777888999999999999999999999999999888888887773332 


Q ss_pred             ----ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607        406 ----NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEV-ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  480 (677)
Q Consensus       406 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  480 (677)
                          +.+.-...|++.....|..... ..+...+.....+.. +..++...+..  .-|.++.++-.+|....+..-...
T Consensus        88 ~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHH
Confidence                4566678888877777754322 222222222223333 23334444433  355666666666654443333333


Q ss_pred             HHHHHHhh---------------hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16607        481 CFERALSL---------------ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  545 (677)
Q Consensus       481 ~~~~al~~---------------~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  545 (677)
                      ++......               .|......+++.++..+.        ..|++++|+++.++++...|..++.+...|.
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd--------~~g~~~~Al~~Id~aI~htPt~~ely~~Kar  236 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD--------YLGDYEKALEYIDKAIEHTPTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            33332211               111112345677888887        8999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC--
Q psy16607        546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS--  623 (677)
Q Consensus       546 ~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p--  623 (677)
                      ++...|++.+|...++.+..  +++.+..+-...+..+.                   +.|+.++|.+.+..-...+-  
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~L-------------------Ra~~~e~A~~~~~~Ftr~~~~~  295 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLL-------------------RAGRIEEAEKTASLFTREDVDP  295 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHH-------------------HCCCHHHHHHHHHhhcCCCCCc
Confidence            99999999999999999999  88888888888888777                   99999999998887655442  


Q ss_pred             CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        624 SH-------GLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       624 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ..       .......|.+|.+.|++..|+..|..+.+..
T Consensus       296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            11       1223456899999999999999998887753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=5.8e-10  Score=108.72  Aligned_cols=293  Identities=13%  Similarity=0.032  Sum_probs=218.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCC
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN-EVTIMTEMARIFEGLNN  406 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~  406 (677)
                      .-|..-+..|+|.+|++...+.-+..+ ..-.+..-+...-+.|+++.|-.++.++-+..++ ...+...++.+....|+
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d  168 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD  168 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence            445556677999999999999877766 4456666778888899999999999999888443 45677888999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH---HHHHHH--HHHHcCCHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLAL--CCFYSQQYDMVVTC  481 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~--~~~~~g~~~~A~~~  481 (677)
                      +..|.....++++..|.++.++.....+|...|++.....++.+..+..--+.+-   +-+.+.  ++.+.++-+.+.. 
T Consensus       169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g-  247 (400)
T COG3071         169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG-  247 (400)
T ss_pred             chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH-
Confidence            9999999999999999999999999999999999999999998887754333221   111111  1112222222222 


Q ss_pred             HHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy16607        482 FERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC  559 (677)
Q Consensus       482 ~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  559 (677)
                      +....+.-|..  ..+.....++.-+.        .+|+.++|.+...++++..-+.. ....  .-..+-++...=++.
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li--------~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~  316 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLI--------RLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKA  316 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHH--------HcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHH
Confidence            22222222221  11555556666666        88999999999999997765443 1111  223456788888888


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc
Q psy16607        560 FERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       560 ~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  639 (677)
                      .++.+.  ..|+++..+..+|..+.                   +.+.|.+|..+|+.+++..|+ ...+..+|.++.+.
T Consensus       317 ~e~~l~--~h~~~p~L~~tLG~L~~-------------------k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~  374 (400)
T COG3071         317 AEKWLK--QHPEDPLLLSTLGRLAL-------------------KNKLWGKASEALEAALKLRPS-ASDYAELADALDQL  374 (400)
T ss_pred             HHHHHH--hCCCChhHHHHHHHHHH-------------------HhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHc
Confidence            889888  78999999999999998                   999999999999999988875 56788899999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy16607        640 GHIERASTYLQAAAAS  655 (677)
Q Consensus       640 g~~~~A~~~~~~al~~  655 (677)
                      |+..+|.+.+++++.+
T Consensus       375 g~~~~A~~~r~e~L~~  390 (400)
T COG3071         375 GEPEEAEQVRREALLL  390 (400)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            9999999999998854

>KOG1128|consensus

Probab=99.50  E-value=3.2e-12  Score=132.73  Aligned_cols=235  Identities=17%  Similarity=0.234  Sum_probs=207.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI  400 (677)
Q Consensus       321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  400 (677)
                      +..|.....++..+...|-..+|+..|++.       ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV  466 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence            455666678999999999999999999985       6788899999999999999999999998 56688888888888


Q ss_pred             HHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607        401 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  480 (677)
Q Consensus       401 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  480 (677)
                      .....-|++|.++.+..      +..+...+|......++++++.++++..++++|-....|+.+|.+..+.+++..|.+
T Consensus       467 ~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence            87777677777766653      455778888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607        481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF  560 (677)
Q Consensus       481 ~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  560 (677)
                      +|.+++...|++  ..+|++++..|+        ..++..+|...++++++-+-.+...|-+.-.+..+.|.+++|++.|
T Consensus       541 aF~rcvtL~Pd~--~eaWnNls~ayi--------~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  541 AFHRCVTLEPDN--AEAWNNLSTAYI--------RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHHHhhcCCCc--hhhhhhhhHHHH--------HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            999999999999  999999999999        9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHH
Q psy16607        561 ERALSLALNENAADVWYNI  579 (677)
Q Consensus       561 ~~al~~~~~p~~~~~~~~l  579 (677)
                      .+.+.+..+..+..+...+
T Consensus       611 ~rll~~~~~~~d~~vl~~i  629 (777)
T KOG1128|consen  611 HRLLDLRKKYKDDEVLLII  629 (777)
T ss_pred             HHHHHhhhhcccchhhHHH
Confidence            9999855444444444333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.50  E-value=3.9e-12  Score=140.04  Aligned_cols=239  Identities=11%  Similarity=0.051  Sum_probs=174.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      +..++..++..+...+++++|+..++..++.+|+...+++.+|.++.+.+++.++.-+  .++...+.            
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------------   95 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------------   95 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc------------
Confidence            7889999999999999999999999999999999999999999999999987776665  44444333            


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY  515 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~  515 (677)
                        ..++ .+++++...+...+++..+++.+|.||-++|++++|...|+++++.+|++  +.++.++|..+.        .
T Consensus        96 --~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~a--------e  162 (906)
T PRK14720         96 --NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYE--------E  162 (906)
T ss_pred             --ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHH--------H
Confidence              3334 44555555555566677788888888888888888888888888888887  888888888877        5


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST  595 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~  595 (677)
                      . +.++|+.++.+++..              +...++|.++.+++.+.+.  .+|++.+.+..+-...............
T Consensus       163 ~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~  225 (906)
T PRK14720        163 E-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGL  225 (906)
T ss_pred             h-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHH
Confidence            5 788888888877654              5566677777777777777  6676665543332221100000011111


Q ss_pred             chhhh-HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607        596 HTSYL-FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  638 (677)
Q Consensus       596 ~~~~~-~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  638 (677)
                      ....| -|...++|++++..++.+++.+|.+..+...++.+|..
T Consensus       226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence            11222 44488899999999999999999999999999998874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=1.5e-12  Score=121.53  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH-HHhhcCCCCc
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA-IITECSPFSF  593 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~-~~~~~~p~~~  593 (677)
                      ..++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.  .+|++..++..+|.++ .         
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~---------  119 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYY---------  119 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH---------
Confidence            356778889999999999999999999999999999999999999999999  8899999999999864 5         


Q ss_pred             ccchhhhHHhcCCC--HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        594 STHTSYLFIQGISD--TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       594 ~~~~~~~~l~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                                ..|+  +++|...++++++.+|+++.+++.+|.++.+.|++++|+.+|++++++.|.+.+
T Consensus       120 ----------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        120 ----------QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             ----------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence                      6677  599999999999999999999999999999999999999999999999887653

>KOG3060|consensus

Probab=99.49  E-value=1.3e-11  Score=112.57  Aligned_cols=186  Identities=15%  Similarity=0.142  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      +..+-....+....|+.+.|..++++.....|....+....|..+...|++++|+++|+..++-+|.+...+-....+..
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            34445555666667777778888877777778777777777777788888888888888888888877777777777777


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN  516 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~  516 (677)
                      .+|+.-+|++.+...++.++.+.++|..++.+|...|+|++|.-|+++++-+.|.+  +-.+..++.++....     ..
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~g-----g~  204 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQG-----GA  204 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHh-----hH
Confidence            77777788888888888888888888888888888888888888888888777776  666666666654100     23


Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  549 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  549 (677)
                      .+++-|.++|.++++++|.+...++.+-.+...
T Consensus       205 eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  205 ENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            456777788888888888777777666555443

>KOG4340|consensus

Probab=99.49  E-value=7.1e-12  Score=116.46  Aligned_cols=363  Identities=12%  Similarity=0.044  Sum_probs=253.3

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR  369 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~  369 (677)
                      +..++|+||+...+|..|..+|++.-...|. .....+..+..+++.+.+.+|+.....+..... ..+.+...+.+.+.
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs  124 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS  124 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence            5678899999999999999999998888853 334446778888999999999988887765533 55566666777777


Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  449 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  449 (677)
                      .+++..+....++.-.  .++.+...+.|.+.++.|++++|++-|+.+++...-++-.-++++.++++.+++..|+++..
T Consensus       125 e~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS  202 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS  202 (459)
T ss_pred             cccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence            8888877766555321  25678889999999999999999999999999999899999999999999999999999887


Q ss_pred             HHHHc----CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607        450 RLLQM----GLY----------------N---------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  500 (677)
Q Consensus       450 ~al~~----~~~----------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  500 (677)
                      +.++.    .|.                +         .++++..+.++++.|+++.|.+.+..+--....+..+..+.+
T Consensus       203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN  282 (459)
T KOG4340|consen  203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN  282 (459)
T ss_pred             HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence            77653    332                1         145677788999999999998877655333222233566777


Q ss_pred             HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607        501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS  580 (677)
Q Consensus       501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~  580 (677)
                      ++..-         ..+++.+..+-++-.+.++|--.+.+-++-.+|++..-|+-|...+-+--.+... --....+.+-
T Consensus       283 ~Al~n---------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk-~L~~Yly~LL  352 (459)
T KOG4340|consen  283 QALMN---------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYK-FLTPYLYDLL  352 (459)
T ss_pred             HHHhc---------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHH-HhhHHHHHHH
Confidence            77665         4678888888889999999988899999999999998888887665321110000 0001122222


Q ss_pred             HHHHHhhcCCCC--------cccchh--------hhHHhcCC---CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607        581 HVAIITECSPFS--------FSTHTS--------YLFIQGIS---DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  641 (677)
Q Consensus       581 ~~~~~~~~~p~~--------~~~~~~--------~~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  641 (677)
                      ..+......|..        ......        ...-...+   ....|++.|++++++   ...+....+++++...+
T Consensus       353 daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~D  429 (459)
T KOG4340|consen  353 DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLED  429 (459)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccc
Confidence            221111001100        000000        00000111   134456666666664   34577888999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        642 IERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       642 ~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      |..+.+.|+...+...++.....|.|.+
T Consensus       430 y~~vEk~Fr~SvefC~ehd~WkLNvaHv  457 (459)
T KOG4340|consen  430 YPMVEKIFRKSVEFCNDHDVWKLNVAHV  457 (459)
T ss_pred             cHHHHHHHHHHHhhhcccceeeeccccc
Confidence            9999999999999888876655555543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.48  E-value=3.4e-12  Score=119.26  Aligned_cols=123  Identities=12%  Similarity=0.155  Sum_probs=101.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH-HhCCC--hHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH-FYNDQ--PEVALL  446 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  446 (677)
                      .++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            566677888888888888888888888888888888888888888888888888888888888764 56666  488888


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      .++++++.+|+++.++..+|..+...|++++|+.+++++++..|.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            8888888888888888888888888888888888888888887765

>KOG3060|consensus

Probab=99.47  E-value=2.4e-11  Score=110.87  Aligned_cols=202  Identities=16%  Similarity=0.113  Sum_probs=177.7

Q ss_pred             ccCHHHHHHHHHHHHhhCc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHH
Q psy16607        302 ENDVASAMDLAVESTKACE-----FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIR  375 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~  375 (677)
                      ..+.++-++++...+...+     ++.|..+-.+..+.+..|+.+-|..++++.....| +..+....|..+...|++++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence            4677778888777765432     34455556677888889999999999999888888 78888889999999999999


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607        376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  455 (677)
Q Consensus       376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  455 (677)
                      |+++|+..++.+|.+...+...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            99999999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q psy16607        456 LYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVA  505 (677)
Q Consensus       456 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  505 (677)
                      |.++..+..+|.+++-.|   ++.-|.++|.++++++|.+  ..+++.+..+.
T Consensus       185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~--~ral~GI~lc~  235 (289)
T KOG3060|consen  185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN--LRALFGIYLCG  235 (289)
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh--HHHHHHHHHHH
Confidence            999999999999998876   4667899999999999976  77777665554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.47  E-value=1.5e-10  Score=136.21  Aligned_cols=334  Identities=11%  Similarity=-0.002  Sum_probs=241.4

Q ss_pred             HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----------CHHHHHHHHHHH
Q psy16607        298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----------DIEAFIRMIRVY  367 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~la~~~  367 (677)
                      .....|++..+..++..+-..............+.++...|++++|...+.++....+          .......++.++
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            3445677777666665542111122233335678888899999999999998865321          234455678888


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNEV-----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHF  436 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~  436 (677)
                      ...|++++|...+++++...+...     .+...+|.++...|++++|...+++++......      ..++..++.++.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            999999999999999988654322     345778889999999999999999998764321      345677899999


Q ss_pred             hCCChHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc---chHHHHHHHHHHH
Q psy16607        437 YNDQPEVALLFYRRLLQMGLY--------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVA  505 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~l~~~~  505 (677)
                      ..|++++|...+++++.....        ....+..+|.++...|++++|...+.+++......   .....+..++.++
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            999999999999998875221        22345678899999999999999999998764321   1244556677777


Q ss_pred             HHhhhcccccCCCHHHHHHHHHHHHHcCCCc---HHHHH----HHHHHHHhccCHHHHHHHHHHHHHHhhccchH----H
Q psy16607        506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYN---AELFN----NLALCCFYSQQYDMVVTCFERALSLALNENAA----D  574 (677)
Q Consensus       506 ~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~----~  574 (677)
                      .        ..|++++|...+.++.......   .....    .....+...|+.+.|..++.....  ..+...    .
T Consensus       623 ~--------~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~~  692 (903)
T PRK04841        623 L--------ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK--PEFANNHFLQG  692 (903)
T ss_pred             H--------HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC--CCCccchhHHH
Confidence            7        8999999999999987653221   11111    122445567899999998877654  221111    2


Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC------CChHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIERASTY  648 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~  648 (677)
                      .+..++.++.                   ..|++++|...+++++....      ....++..+|.++...|+.++|...
T Consensus       693 ~~~~~a~~~~-------------------~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~  753 (903)
T PRK04841        693 QWRNIARAQI-------------------LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV  753 (903)
T ss_pred             HHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            2456777777                   99999999999999987532      2245788899999999999999999


Q ss_pred             HHHHHHhCCCCh
Q psy16607        649 LQAAAASSPYLY  660 (677)
Q Consensus       649 ~~~al~~~p~~~  660 (677)
                      +.+++++.....
T Consensus       754 L~~Al~la~~~g  765 (903)
T PRK04841        754 LLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHhCccc
Confidence            999999875543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.46  E-value=1e-11  Score=136.74  Aligned_cols=179  Identities=13%  Similarity=0.090  Sum_probs=119.3

Q ss_pred             hhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHH
Q psy16607        282 AKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFI  361 (677)
Q Consensus       282 ~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  361 (677)
                      .++.....-+..-+...+...+++++|+++++..+...|.... +++.+|..++..+++.++...  .++...       
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-~yy~~G~l~~q~~~~~~~~lv--~~l~~~-------   93 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-ALYISGILSLSRRPLNDSNLL--NLIDSF-------   93 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-hHHHHHHHHHhhcchhhhhhh--hhhhhc-------
Confidence            3333333333333344455567777777777766666643333 335666666666665555444  333222       


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP  441 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  441 (677)
                            ....++ .+++++...+...+.+..+++.+|.+|.++|+.++|...|+++++.+|+++.++.++|..|... +.
T Consensus        94 ------~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         94 ------SQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             ------ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence                  222233 3444444444445666678888888888888888888888888888888888888888888888 88


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       442 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++|++++.+++..              +...++|.++..++.+.+..+|++
T Consensus       166 ~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d  202 (906)
T PRK14720        166 EKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDD  202 (906)
T ss_pred             HHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCccc
Confidence            8888888888776              566678888888888888888776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.45  E-value=1.3e-11  Score=114.10  Aligned_cols=168  Identities=17%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607        382 NALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  461 (677)
Q Consensus       382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  461 (677)
                      +....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..++++....|++.++
T Consensus        58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence            333444444444 4444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN  541 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  541 (677)
                      |..+|.+|.+.|+++.|...|.+++++.|.+  +.+..++|..+.        -.|+++.|..++..+....+.+..+..
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~--------L~gd~~~A~~lll~a~l~~~ad~~v~~  206 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLL--------LRGDLEDAETLLLPAYLSPAADSRVRQ  206 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHH--------HcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence            4444444444444444444444444444444  444444444444        444444444444444444444445555


Q ss_pred             HHHHHHHhccCHHHHHHHH
Q psy16607        542 NLALCCFYSQQYDMVVTCF  560 (677)
Q Consensus       542 ~la~~~~~~g~~~~A~~~~  560 (677)
                      +++.+....|++++|....
T Consensus       207 NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         207 NLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHhhcCChHHHHhhc
Confidence            5555555555555554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.45  E-value=8.3e-12  Score=115.25  Aligned_cols=182  Identities=15%  Similarity=0.103  Sum_probs=160.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQP  519 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~  519 (677)
                      +...+...+-+....+|.+..+ .+++..+...|+-+.+..+..++....|.+  ......+|....        ..|++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--~~ll~~~gk~~~--------~~g~~  116 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--RELLAAQGKNQI--------RNGNF  116 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--HHHHHHHHHHHH--------Hhcch
Confidence            3444666666777788999888 899999999999999999999988888887  777777888777        88999


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhh
Q psy16607        520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSY  599 (677)
Q Consensus       520 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~  599 (677)
                      .+|+..++++....|++.+.|+.+|.+|.+.|++++|...|.++++  +.|+.+.+..|+|..+.               
T Consensus       117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~---------------  179 (257)
T COG5010         117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLL---------------  179 (257)
T ss_pred             HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHH---------------
Confidence            9999999999999999999999999999999999999999999999  88999999999999998               


Q ss_pred             hHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        600 LFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA  653 (677)
Q Consensus       600 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  653 (677)
                          -.|+++.|..++..+....+.+..+..+++.+....|++++|...-.+-+
T Consensus       180 ----L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         180 ----LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             ----HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence                99999999999999998888889999999999999999999988776543

>KOG1128|consensus

Probab=99.44  E-value=7.6e-12  Score=129.98  Aligned_cols=217  Identities=16%  Similarity=0.136  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      .-..++.++...|-...|+..|++.        ..|.....+|...|+..+|..+..+-++ .|.++..|..+|.+....
T Consensus       400 ~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence            3344555555555555555555442        2333344455555555555555544444 334444444444444333


Q ss_pred             CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q psy16607        473 QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  552 (677)
Q Consensus       473 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  552 (677)
                      .-|++|.++.+..-        ..+...+|....        ..++++++.+.++..++++|-....|+.+|.+..+.++
T Consensus       471 s~yEkawElsn~~s--------arA~r~~~~~~~--------~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  471 SLYEKAWELSNYIS--------ARAQRSLALLIL--------SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             HHHHHHHHHhhhhh--------HHHHHhhccccc--------cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence            33333333222110        222223333222        34555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHH
Q psy16607        553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL  632 (677)
Q Consensus       553 ~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  632 (677)
                      +..|.++|.+++.  .+|++..+|++++..|.                   +.|+..+|...++++++.+-.+..+|-|.
T Consensus       535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi-------------------~~~~k~ra~~~l~EAlKcn~~~w~iWENy  593 (777)
T KOG1128|consen  535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYI-------------------RLKKKKRAFRKLKEALKCNYQHWQIWENY  593 (777)
T ss_pred             hHHHHHHHHHHhh--cCCCchhhhhhhhHHHH-------------------HHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence            5555555555555  45555555555555555                   55555555555555555555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        633 AVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       633 a~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      -.+....|.+++|+..|.+.+.+
T Consensus       594 mlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  594 MLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHh
Confidence            55555555555555555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.43  E-value=3.4e-11  Score=132.07  Aligned_cols=161  Identities=9%  Similarity=0.008  Sum_probs=114.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHH---ccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        332 KCYFSLGLIREAQQQFNSAL---NQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       332 ~~~~~~g~~~~A~~~~~~al---~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      .+....+....+...+-+++   ...| +.+++..+|.+..+.|.+++|..+++.+++..|++..++..++.++.+.+++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~  136 (694)
T PRK15179         57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI  136 (694)
T ss_pred             HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH
Confidence            34444444433333333333   2344 5777777777777777777777777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      ++|+..+++++..+|++..+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++
T Consensus       137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhccc
Q psy16607        488 LALNE  492 (677)
Q Consensus       488 ~~p~~  492 (677)
                      ...+-
T Consensus       217 ~~~~~  221 (694)
T PRK15179        217 AIGDG  221 (694)
T ss_pred             hhCcc
Confidence            65543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.41  E-value=1.9e-11  Score=134.00  Aligned_cols=136  Identities=15%  Similarity=-0.025  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                      .+++..++.+..        ..|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.  .+|++..
T Consensus        86 ~~~~~~La~i~~--------~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~  155 (694)
T PRK15179         86 ELFQVLVARALE--------AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAR  155 (694)
T ss_pred             HHHHHHHHHHHH--------HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHH
Confidence            555555555555        555555555555555555555555555555555555555555555555555  5555555


Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      .++.+|.++.                   +.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++
T Consensus       156 ~~~~~a~~l~-------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        156 EILLEAKSWD-------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHHH-------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555                   555555555555555555555555555555555555555555555555555


Q ss_pred             hCCCC
Q psy16607        655 SSPYL  659 (677)
Q Consensus       655 ~~p~~  659 (677)
                      ....-
T Consensus       217 ~~~~~  221 (694)
T PRK15179        217 AIGDG  221 (694)
T ss_pred             hhCcc
Confidence            54433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.39  E-value=1.2e-11  Score=109.01  Aligned_cols=119  Identities=18%  Similarity=0.137  Sum_probs=113.8

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      +.+++++..+|++....+.+|.++...|++++|+..+++++.  .+|.+..+|..+|.++.                   
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~-------------------   62 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQ-------------------   62 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------
Confidence            467889999999999999999999999999999999999999  88999999999999999                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  663 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  663 (677)
                      ..|++++|+..+++++..+|.++..++.+|.++...|++++|+..|+++++++|++....
T Consensus        63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            999999999999999999999999999999999999999999999999999999998744

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.39  E-value=1.4e-09  Score=127.94  Aligned_cols=348  Identities=13%  Similarity=-0.006  Sum_probs=246.9

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHcCChHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ--FTDIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A  376 (677)
                      +...|++.+|+..+..+-...  .........+..+...|++..+...+..+-..  ..++......+.++...|++++|
T Consensus       351 ~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a  428 (903)
T PRK04841        351 WLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV  428 (903)
T ss_pred             HHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence            556789998887666553221  11122344667777889988877776654111  11444556778888899999999


Q ss_pred             HHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChH
Q psy16607        377 IDIGRNALDCYPN---------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPE  442 (677)
Q Consensus       377 ~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~  442 (677)
                      ...+..+....+.         .......++.++...|++++|...+++++...+..     ..+...+|.++...|+++
T Consensus       429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~  508 (903)
T PRK04841        429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA  508 (903)
T ss_pred             HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence            9999988764321         12345567888899999999999999999864432     235567888999999999


Q ss_pred             HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc------hHHHHHHHHHHHHHhhh
Q psy16607        443 VALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN------AADVWYNISHVAILNAL  510 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~l~~~~~l~~l  510 (677)
                      +|...+++++......      ...+..+|.++...|++++|...+++++.......      ....+..++.++.    
T Consensus       509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----  584 (903)
T PRK04841        509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW----  584 (903)
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH----
Confidence            9999999998753321      24567789999999999999999999988643210      1223445666666    


Q ss_pred             cccccCCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHH----HH
Q psy16607        511 STSVYNDQPEVALLFYRRLLQMGL-----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYN----IS  580 (677)
Q Consensus       511 ~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~----l~  580 (677)
                          ..|++++|...+.+++....     .....+..++.++...|++++|...+.++..+...... ......    ..
T Consensus       585 ----~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        585 ----EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             ----HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence                78999999999999886432     23456677899999999999999999999874322211 111111    11


Q ss_pred             HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL----SQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ..+.                   ..|+.+.|...+.......+....    .+..++.++...|++++|...+++++...
T Consensus       661 ~~~~-------------------~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~  721 (903)
T PRK04841        661 IYWQ-------------------MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA  721 (903)
T ss_pred             HHHH-------------------HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            2223                   689999999998776653322221    25678999999999999999999999863


Q ss_pred             C------CChHHHHHHHHHHHhcCC
Q psy16607        657 P------YLYETHYNQAVISNLVSV  675 (677)
Q Consensus       657 p------~~~~~~~~la~~~~~~G~  675 (677)
                      .      ....++..+|.++...|+
T Consensus       722 ~~~g~~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        722 RSLRLMSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHcCC
Confidence            2      223567788999988886

>KOG4340|consensus

Probab=99.38  E-value=8e-11  Score=109.58  Aligned_cols=313  Identities=15%  Similarity=0.098  Sum_probs=222.4

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI  377 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~  377 (677)
                      +.+..+|..|++++..-.+..|.+.... ..+|.||+...+|..|..+|++.-...| .....+..+..+++.+.+.+|+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgL-SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGL-SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            3778899999999999998886555544 7899999999999999999999999988 5566677888999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      .....+.....-....+...+.+.+..+++..+....++.-  ..+......+.|.+.++.|+++.|++-|+.+++....
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence            98877654422233455566777778888888877665532  1246778889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      .+.+-++++.++++.|++..|+++....++..-.+ .++  .++|..-.   .......|+.   +..-..      .-.
T Consensus       177 qpllAYniALaHy~~~qyasALk~iSEIieRG~r~-HPE--lgIGm~te---giDvrsvgNt---~~lh~S------al~  241 (459)
T KOG4340|consen  177 QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQ-HPE--LGIGMTTE---GIDVRSVGNT---LVLHQS------ALV  241 (459)
T ss_pred             CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc-CCc--cCccceec---cCchhcccch---HHHHHH------HHH
Confidence            99999999999999999999999888877665332 111  12222211   0000001111   001111      113


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL  617 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~  617 (677)
                      ++++..+.++++.++++.|.+.+..+--.....-++..+.+++..-                    ..+++.+..+-+.-
T Consensus       242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n--------------------~~~~p~~g~~KLqF  301 (459)
T KOG4340|consen  242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN--------------------MDARPTEGFEKLQF  301 (459)
T ss_pred             HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc--------------------ccCCccccHHHHHH
Confidence            4566778888999999988877755433212223455666666553                    45667777777777


Q ss_pred             HHccCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607        618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYL  649 (677)
Q Consensus       618 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  649 (677)
                      .+.++|--.+.+-++-.+|++..-++-|...+
T Consensus       302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            78888866677888888888877777665544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.37  E-value=1.3e-11  Score=121.95  Aligned_cols=260  Identities=15%  Similarity=0.122  Sum_probs=173.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607        331 GKCYFSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       331 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      .+.++..|+|..++..++ .....+  .......+.+++..+|+++..+.-...   ..+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            345666777777776665 222333  455667777777778877765544432   12223444555555554444555


Q ss_pred             HHHHHHHHHHHhCc--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        409 MSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       409 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      .++..++..+....  .+.......|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56655554433221  23344555667777888888888877653     567777788888889999999999998888


Q ss_pred             hhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607        487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  566 (677)
Q Consensus       487 ~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  566 (677)
                      +.+.+.  .  ..+++..+.-...    -.+++.+|...|++..+..+.++..++.++.++..+|+|++|...+++++. 
T Consensus       159 ~~~eD~--~--l~qLa~awv~l~~----g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~-  229 (290)
T PF04733_consen  159 QIDEDS--I--LTQLAEAWVNLAT----GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE-  229 (290)
T ss_dssp             CCSCCH--H--HHHHHHHHHHHHH----TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC-
T ss_pred             hcCCcH--H--HHHHHHHHHHHHh----CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence            776654  2  3333333320000    124689999999998888888899999999999999999999999999988 


Q ss_pred             hhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH-HHHHHHHHHHHccCCCChHH
Q psy16607        567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT-RLAIQCLHLALSIDSSHGLS  628 (677)
Q Consensus       567 ~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~-~~A~~~~~~al~~~p~~~~~  628 (677)
                       .+|++++++.++..+..                   ..|+. +.+.+++.+....+|+++.+
T Consensus       230 -~~~~~~d~LaNliv~~~-------------------~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  230 -KDPNDPDTLANLIVCSL-------------------HLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             -C-CCHHHHHHHHHHHHH-------------------HTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             -hccCCHHHHHHHHHHHH-------------------HhCCChhHHHHHHHHHHHhCCCChHH
Confidence             88999999999999888                   88888 66777888888888887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2047|consensus

Probab=99.37  E-value=7.2e-09  Score=106.39  Aligned_cols=296  Identities=14%  Similarity=0.079  Sum_probs=201.8

Q ss_pred             HHcCCHHHHHHHHHHHHc-cCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHH
Q psy16607        335 FSLGLIREAQQQFNSALN-QFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP----NEVTIMTEMARIFEG  403 (677)
Q Consensus       335 ~~~g~~~~A~~~~~~al~-~~p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~  403 (677)
                      +..|+..+-+..|.++++ .+|      -...|..+|..|...|+.+.|...|+++.+..=    +-..+|...|..-.+
T Consensus       358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr  437 (835)
T KOG2047|consen  358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR  437 (835)
T ss_pred             hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence            334666777777777776 344      246778888888888888888888888877642    225678888888888


Q ss_pred             cCChhHHHHHHHHHHHhCc------------------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607        404 LNNMPMSVKYYKLILKRDA------------------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL  465 (677)
Q Consensus       404 ~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  465 (677)
                      ..+++.|+.+.+++...-.                  .+...|..++......|-++.....|++++.+.--.|....+.
T Consensus       438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny  517 (835)
T KOG2047|consen  438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY  517 (835)
T ss_pred             hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8888888888888765421                  1245677778888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH--HHHHHH
Q psy16607        466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA--ELFNNL  543 (677)
Q Consensus       466 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l  543 (677)
                      |..+....-++++.+.|++.+.+.+-+...+.|...-.... .    .+.....+.|...|+++++..|...  ..+...
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi-~----rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY  592 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI-K----RYGGTKLERARDLFEQALDGCPPEHAKTIYLLY  592 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH-H----HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            98888888899999999998888766545666655443332 0    1134568889999999998877432  245556


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHhhccchH-HHHHHH-HHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        544 ALCCFYSQQYDMVVTCFERALSLALNENAA-DVWYNI-SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       544 a~~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~l-~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                      +..-..-|--..|+..|+++... ..+... +.|... ..+..                   .. -...-...|++|++.
T Consensus       593 A~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae-------------------~y-Gv~~TR~iYekaIe~  651 (835)
T KOG2047|consen  593 AKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE-------------------IY-GVPRTREIYEKAIES  651 (835)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH-------------------Hh-CCcccHHHHHHHHHh
Confidence            67777778888899999887652 222222 222111 11100                   01 112334566777766


Q ss_pred             CCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        622 DSSHG--LSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       622 ~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      -|+..  +.....+.+-.+.|..+.|..+|.-+-++.
T Consensus       652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~  688 (835)
T KOG2047|consen  652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC  688 (835)
T ss_pred             CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence            66542  344556777777888888888887777754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.36  E-value=1.4e-11  Score=121.70  Aligned_cols=256  Identities=11%  Similarity=0.027  Sum_probs=188.8

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID  378 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~  378 (677)
                      ++-.|+|..++..++ .....+.........+.+++..+|+++..+......  ..|...+...++..+...++-+.++.
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHH
Confidence            345699999997777 334444444455578899999999988776555432  24566666777776665556667776


Q ss_pred             HHHHHHHcC--CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607        379 IGRNALDCY--PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  456 (677)
Q Consensus       379 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  456 (677)
                      .++..+...  +.+..+....|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.+.+.
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e  162 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE  162 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            666554332  234556677778888899999999888764     5678888888999999999999999999988887


Q ss_pred             CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        457 YNAELFNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       457 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      +..-....-+++....|  ++.+|..+|+...+..+..  +..+..++.+.+        .+|++++|.+.+.+++..+|
T Consensus       163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l--------~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHL--------QLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHH--------HCT-HHHHHHHHHHHCCC-C
T ss_pred             cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHhcc
Confidence            76666666666666666  5899999999988877666  888888999988        99999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhhccchHH
Q psy16607        535 YNAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~p~~~~  574 (677)
                      ++++++.+++.+....|+. +.+.+++.+...  .+|+++.
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~~  271 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHPL  271 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSHH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCChH
Confidence            9999999999999999988 556677777666  6777663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0553|consensus

Probab=99.36  E-value=1e-11  Score=116.80  Aligned_cols=110  Identities=18%  Similarity=0.126  Sum_probs=57.9

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                      .-|.-+.+.++|.+|+..|.+||.  ++|.++..|.+.+.+|.                   ++|.++.|++.++.++.+
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~-------------------~Lg~~~~AVkDce~Al~i  144 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYS-------------------KLGEYEDAVKDCESALSI  144 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHH-------------------HhcchHHHHHHHHHHHhc
Confidence            334444555555555555555555  45555555555555555                   555555555555555555


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        622 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       622 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      +|.+..+|..||.+|..+|++++|++.|+++++++|++...+-+|..+...
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555444433

>KOG2047|consensus

Probab=99.34  E-value=8.8e-08  Score=98.64  Aligned_cols=327  Identities=13%  Similarity=0.074  Sum_probs=233.2

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhh-Cc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C----CHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKA-CE----FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF-T----DIEAF  360 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~-~p----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~~~  360 (677)
                      ...+...+-+..|+..+-+..|.++++. +|    .+....+...|..|...|+.+.|...|+++.+.+ +    -..+|
T Consensus       349 V~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw  428 (835)
T KOG2047|consen  349 VEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW  428 (835)
T ss_pred             HHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence            3334445555679999999999999864 33    2222333789999999999999999999999865 3    35788


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCC------------------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPN------------------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA  422 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  422 (677)
                      ..-|..-.+..+++.|+.+.+++...-..                  ...+|...+......|-++.....|++++.+.-
T Consensus       429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence            89999999999999999999988754211                  134677888888899999999999999999988


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607        423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCF---YSQQYDMVVTCFERALSLALNENAADV  497 (677)
Q Consensus       423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~  497 (677)
                      -.+....+.|..+....-++++.+.|++.+.+.  |.-.++|+..-..+.   ..-+.+.|..+|++|++..|....-..
T Consensus       509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti  588 (835)
T KOG2047|consen  509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI  588 (835)
T ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            889999999999999999999999999999986  445566665444333   345789999999999998885421223


Q ss_pred             HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHhhccch-
Q psy16607        498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENA-  572 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~p~~-  572 (677)
                      +...+..-.        +-|-...|+..|+++-..-+...  .+.+=.+|.+.    =-...-...|++|++  .-|+. 
T Consensus       589 yLlYA~lEE--------e~GLar~amsiyerat~~v~~a~--~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~  656 (835)
T KOG2047|consen  589 YLLYAKLEE--------EHGLARHAMSIYERATSAVKEAQ--RLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSK  656 (835)
T ss_pred             HHHHHHHHH--------HhhHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHH
Confidence            333333333        55888899999999775443221  11111222211    112344567888888  34433 


Q ss_pred             -HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC-CC-ChHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        573 -ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID-SS-HGLSQNNLAVLEAREGHIERASTY  648 (677)
Q Consensus       573 -~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~  648 (677)
                       ...-...+..-.                   +.|..+.|...|.-+-++. |. +.+.|..--..-.+.|+-+.-.+.
T Consensus       657 ~r~mclrFAdlEt-------------------klGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM  716 (835)
T KOG2047|consen  657 AREMCLRFADLET-------------------KLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM  716 (835)
T ss_pred             HHHHHHHHHHHhh-------------------hhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence             344555566666                   8999999999998887764 43 456777777777788884433333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.33  E-value=3.7e-11  Score=105.89  Aligned_cols=115  Identities=10%  Similarity=0.061  Sum_probs=92.2

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      ..+++++..+|++......+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35677777788777777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++..++.+|.++...|++++|+..|+++++.+|++
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            88888888888888888888888888888887776

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.32  E-value=5.8e-11  Score=102.64  Aligned_cols=107  Identities=12%  Similarity=0.028  Sum_probs=101.4

Q ss_pred             HHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        530 LQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       530 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                      ..+. ++.-+..+.+|..+...|++++|...|+....  .+|.+...|++||.++.                   .+|++
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q-------------------~~g~~   85 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQ-------------------AQKHW   85 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH-------------------HHhhH
Confidence            3556 67778899999999999999999999999999  89999999999999999                   99999


Q ss_pred             HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      ++|+..|.+++.++|+++..++++|.++...|+.+.|++.|+.++...-
T Consensus        86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999873

>KOG0553|consensus

Probab=99.30  E-value=4.3e-11  Score=112.63  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                      ++-+-.-|.-++        +.++|.+|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.  ++|.+..
T Consensus        81 AE~LK~eGN~~m--------~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~ysk  150 (304)
T KOG0553|consen   81 AESLKNEGNKLM--------KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSK  150 (304)
T ss_pred             HHHHHHHHHHHH--------HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHH
Confidence            344455566666        899999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHH---HHHHHHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE---RASTYLQA  651 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~  651 (677)
                      +|..||.+|.                   .+|++++|++.|+++++++|++...+.+|..+-.+.+...   .+...++.
T Consensus       151 ay~RLG~A~~-------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~  211 (304)
T KOG0553|consen  151 AYGRLGLAYL-------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDM  211 (304)
T ss_pred             HHHHHHHHHH-------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhh
Confidence            9999999999                   9999999999999999999999999999988888777655   44444444


Q ss_pred             HHH
Q psy16607        652 AAA  654 (677)
Q Consensus       652 al~  654 (677)
                      +..
T Consensus       212 ~~~  214 (304)
T KOG0553|consen  212 AGL  214 (304)
T ss_pred             hhh
Confidence            433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.27  E-value=2e-10  Score=99.28  Aligned_cols=107  Identities=12%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             HHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607        383 ALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  461 (677)
Q Consensus       383 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  461 (677)
                      +..+. ++..+..+.+|..+...|++++|...|+-+...+|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34455 66777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLA  489 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~  489 (677)
                      +.+.|.+++..|+.+.|.+.|+.++...
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=2.3e-09  Score=107.49  Aligned_cols=154  Identities=14%  Similarity=0.055  Sum_probs=138.0

Q ss_pred             cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607        422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  501 (677)
Q Consensus       422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  501 (677)
                      |....+++..+..++..|++++|+..++..++..|+++..+...+.++...++.++|.+.+++++...|..  ...+.++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~  380 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNL  380 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999997  8888999


Q ss_pred             HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607        502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  581 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~  581 (677)
                      |..+.        +.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+...                
T Consensus       381 a~all--------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------------  436 (484)
T COG4783         381 AQALL--------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------------  436 (484)
T ss_pred             HHHHH--------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH----------------
Confidence            99998        899999999999999999999999999999999999988888877766665                


Q ss_pred             HHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607        582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS  623 (677)
Q Consensus       582 ~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p  623 (677)
                                            ..|++++|+..+..+.+...
T Consensus       437 ----------------------~~G~~~~A~~~l~~A~~~~~  456 (484)
T COG4783         437 ----------------------LAGRLEQAIIFLMRASQQVK  456 (484)
T ss_pred             ----------------------hCCCHHHHHHHHHHHHHhcc
Confidence                                  88999999999988887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=6.1e-09  Score=104.51  Aligned_cols=124  Identities=12%  Similarity=0.021  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      ...+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++.++|.....+.++|..|
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al  384 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL  384 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            44555555555555666666666666655556666655556666666666666666666666666665555555666666


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  479 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  479 (677)
                      .+.|++.+|+..++..+..+|+++..|..++..|..+|+..++.
T Consensus       385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence            66666666666666666666666666666666665555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.16  E-value=6.6e-10  Score=114.12  Aligned_cols=112  Identities=14%  Similarity=0.151  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      +...|..++..|+|++|+.+|++++.  .+|++..+++++|.++.                   .+|++++|+..+++++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~-------------------~~g~~~eAl~~~~~Al   63 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANI-------------------KLGNFTEAVADANKAI   63 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHH
Confidence            34456666777777777777777777  67777777777777777                   7777777777777777


Q ss_pred             ccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        620 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       620 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      .++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.|...
T Consensus        64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777766444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.09  E-value=2.1e-09  Score=110.38  Aligned_cols=113  Identities=14%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      +...|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34456666667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      ++++|+..|++++.++|+++.+...++.+...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            777777777777777777777666666664444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.06  E-value=2e-08  Score=94.74  Aligned_cols=157  Identities=13%  Similarity=0.086  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHH
Q psy16607        323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV---TIMT  395 (677)
Q Consensus       323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  395 (677)
                      +...++..|..++..|+|.+|+..|++++...|    ...+.+.+|.+++..|++++|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            444557888888888888888888888888776    457788888888888888888888888888887653   4677


Q ss_pred             HHHHHHHHcC-----------ChhHHHHHHHHHHHhCcCCH-----------------HHHHHHHHHHHhCCChHHHHHH
Q psy16607        396 EMARIFEGLN-----------NMPMSVKYYKLILKRDATCM-----------------EAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       396 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      .+|.++....           ...+|+..|+..+...|++.                 .--+.+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            7777765442           34578888888888888752                 1224568889999999999999


Q ss_pred             HHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHH
Q psy16607        448 YRRLLQMGLYNA---ELFNNLALCCFYSQQYDMVV  479 (677)
Q Consensus       448 ~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~  479 (677)
                      ++.+++..|+..   +++..++..|..+|..+.|.
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999988875   56788888888888887543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.04  E-value=6e-08  Score=93.63  Aligned_cols=181  Identities=11%  Similarity=-0.042  Sum_probs=119.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHH
Q psy16607        323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D---IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMT  395 (677)
Q Consensus       323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  395 (677)
                      +....+..|..++..|++++|+..|++++...| .   ..+.+.+|.++++.+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            444446788888888888888888888888877 2   3455788888888888888888888888888765   34677


Q ss_pred             HHHHHHHHcCC------------------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        396 EMARIFEGLNN------------------MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       396 ~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      .+|.++...+.                  ..+|+..|++.++..|++.-+              .+|...+..+-.   .
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---~  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---R  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---H
Confidence            77777654431                  245667777777777765211              111111100000   0


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR  528 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~  528 (677)
                      -..--..+|..|.+.|.|..|+.-++.+++..|+. ...++++.++..+.        ..|..++|......
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~--------~lg~~~~a~~~~~~  237 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR--------QLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH--------HcCChHHHHHHHHH
Confidence            01122356777778888888888888888777766 44567777777776        77777777665544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=1.2e-07  Score=84.70  Aligned_cols=194  Identities=15%  Similarity=0.045  Sum_probs=139.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      ....++..|..|-..|-+.-|.--|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            34566777888888898999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF-ERALSLALNENAADVWYNISHVAILNALSTSV  514 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~  514 (677)
                      +..|+++-|.+-+.+..+.+|++|.--..+-..- ..-++.+|...+ +++-..+.+   .--|+..+..          
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e---~WG~~iV~~y----------  209 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE---QWGWNIVEFY----------  209 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh---hhhHHHHHHH----------
Confidence            9999999999999999998988875322222222 223455555444 445444333   2222222211          


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYN-------AELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                       .|+..+ ...++++.....++       .+.++.+|..+...|+.++|...|+-++.
T Consensus       210 -LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         210 -LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             -HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence             122211 11222332222222       46789999999999999999999999987

>KOG1941|consensus

Probab=98.98  E-value=1.4e-07  Score=90.70  Aligned_cols=241  Identities=15%  Similarity=0.058  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HH
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AE  460 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~  460 (677)
                      +++.+++..+.+..++.+++.+-+..+.+....     ......++.++..++.++++++.|+.+++....+      -.
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            345555666666666666665555554442222     2344556666666677777777777776653322      24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--------chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALNE--------NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM  532 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~  532 (677)
                      ++..+|.+|....++++|.-+..++.++....        ...-+++.++..+.        ..|..-.|.++.+++.++
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR--------~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR--------LLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH--------HhcccccHHHHHHHHHHH
Confidence            56677777777788888877777776654332        11334566666666        789999999999888754


Q ss_pred             C------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHH
Q psy16607        533 G------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFI  602 (677)
Q Consensus       533 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l  602 (677)
                      .      +-.......+|.+|...|+.+.|..-|+.+......-+    ...+....+.++.              ..-+
T Consensus       236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~--------------~~r~  301 (518)
T KOG1941|consen  236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE--------------TLRL  301 (518)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--------------HHHH
Confidence            3      23456777899999999999999999999987432222    2234444454443              0001


Q ss_pred             hcCCCHHHHHHHHHHHHccCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        603 QGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       603 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      ...+.-=.|++.-++++++...-      ...+..++.+|..+|.-++=...+.++-+
T Consensus       302 ~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  302 QNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             hhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            11222245777777777764322      24677899999999888877777766544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.98  E-value=1.9e-07  Score=90.13  Aligned_cols=191  Identities=8%  Similarity=-0.056  Sum_probs=120.4

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHH
Q psy16607        424 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWY  499 (677)
Q Consensus       424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~  499 (677)
                      .+..++..|..+...|++++|++.|++++...|..+.+   .+.+|.++.+.+++++|+..+++.++..|++ ....+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            44555566666666666666666666666666655433   3566666666666666666666666666665 4455666


Q ss_pred             HHHHHHHHhh---hccc-------ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q psy16607        500 NISHVAILNA---LSTS-------VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  569 (677)
Q Consensus       500 ~l~~~~~l~~---l~~~-------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  569 (677)
                      .+|.++....   +..+       .......+|+..|++.++..|++.-+              .+|...+..+.     
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~-----  171 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK-----  171 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH-----
Confidence            6666542000   0000       01122357888999999999986432              22222111111     


Q ss_pred             cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHH
Q psy16607        570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERAS  646 (677)
Q Consensus       570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~  646 (677)
                      ..-..--..+|..|.                   +.|.|..|+.-++.+++..|+.   .+++..++..|..+|..++|.
T Consensus       172 ~~la~~e~~ia~~Y~-------------------~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~  232 (243)
T PRK10866        172 DRLAKYELSVAEYYT-------------------KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD  232 (243)
T ss_pred             HHHHHHHHHHHHHHH-------------------HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence            111222335677777                   9999999999999999988875   578899999999999999998


Q ss_pred             HHHHHH
Q psy16607        647 TYLQAA  652 (677)
Q Consensus       647 ~~~~~a  652 (677)
                      ......
T Consensus       233 ~~~~~l  238 (243)
T PRK10866        233 KVAKII  238 (243)
T ss_pred             HHHHHH
Confidence            876543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.97  E-value=1.4e-08  Score=87.10  Aligned_cols=107  Identities=14%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA---ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      +..++.+|..+...|++++|+..|++++.  ..|++   ..+++.+|.++.                   ..|++++|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~   60 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYY-------------------AQGKYADAAK   60 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHH-------------------hhccHHHHHH
Confidence            45788999999999999999999999998  66655   578999999999                   9999999999


Q ss_pred             HHHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        614 CLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       614 ~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                      .|++++...|++   +.++..+|.++...|++++|...++++++..|++..+..
T Consensus        61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999998875   678999999999999999999999999999999876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.97  E-value=4.7e-08  Score=92.17  Aligned_cols=159  Identities=13%  Similarity=0.105  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIA  429 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  429 (677)
                      ....++..|..++..|++.+|+..|++++...|..   ..+.+.+|.++...|++++|+..+++.++..|++   ..+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46788999999999999999999999999998864   6789999999999999999999999999999986   56788


Q ss_pred             HHHHHHHhCC-----------ChHHHHHHHHHHHHcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy16607        430 CIGVNHFYND-----------QPEVALLFYRRLLQMGLYNAEL-----------------FNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       430 ~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~-----------------~~~la~~~~~~g~~~~A~~~  481 (677)
                      .+|.+++...           ...+|+..|+..+...|++..+                 -+.+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8888765542           3458999999999999987522                 24578899999999999999


Q ss_pred             HHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHH
Q psy16607        482 FERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVA  522 (677)
Q Consensus       482 ~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A  522 (677)
                      ++.+++..|+. ....++..++..+.        +.|..+.|
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~--------~l~~~~~a  197 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYY--------KLGLKQAA  197 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHH--------HTT-HHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHH--------HhCChHHH
Confidence            99999999987 34567788888887        77877644

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.97  E-value=2.7e-06  Score=82.28  Aligned_cols=225  Identities=21%  Similarity=0.218  Sum_probs=112.2

Q ss_pred             CChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHH--hCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYPN--EVTIMTEMARIFEGLNNMPMSVKYYKLILK--RDATCMEAIACIGVNHFYNDQPEVALL  446 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~  446 (677)
                      +.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4445555555555555443  244455555555555555555555555554  344445555555555555555555555


Q ss_pred             HHHHHHHcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607        447 FYRRLLQMGLYNAELFNNLAL-CCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAILNALSTSVYNDQPEVALL  524 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~  524 (677)
                      .+..++...+.........+. ++...|+++.|...+.+++...|. .                                
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------  164 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN--------------------------------  164 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc--------------------------------
Confidence            555555544444333333333 455555555555555555443331 1                                


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        525 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       525 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                                .....+...+..+...+++++|+..+.+++.  ..+. ....+..++..+.                   
T Consensus       165 ----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------  213 (291)
T COG0457         165 ----------ELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYL-------------------  213 (291)
T ss_pred             ----------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHH-------------------
Confidence                      2233333333334445555555555555555  3444 3445555555554                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  658 (677)
                      ..+++++|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus       214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            5555555555555555555554444455555555444555555555555555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.96  E-value=2.8e-08  Score=91.00  Aligned_cols=126  Identities=19%  Similarity=0.239  Sum_probs=100.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCC
Q psy16607        516 NDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                      .+.+..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+..++ ..+.+|.++|.++.        
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--------   83 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--------   83 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH--------
Confidence            344555555665554444444  5678999999999999999999999999832222 24568999999999        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCC
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA-------REGHIE-------RASTYLQAAAASSPY  658 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~  658 (677)
                                 ..|++++|+..+++++.+.|.....+.++|.++.       ..|+++       +|+.+|++++..+|.
T Consensus        84 -----------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033         84 -----------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             -----------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence                       9999999999999999999999999999999988       777766       666777778888886


Q ss_pred             Ch
Q psy16607        659 LY  660 (677)
Q Consensus       659 ~~  660 (677)
                      +.
T Consensus       153 ~~  154 (168)
T CHL00033        153 NY  154 (168)
T ss_pred             cH
Confidence            64

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.96  E-value=1.8e-08  Score=92.54  Aligned_cols=119  Identities=18%  Similarity=0.267  Sum_probs=99.3

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI  612 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~  612 (677)
                      +.....++.+|..+...|++++|+.+|++++....++. ...++..+|.++.                   ..|++++|+
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~   92 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-------------------SNGEHDKAL   92 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-------------------HcCCHHHHH
Confidence            35567889999999999999999999999998432322 3578999999998                   999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        613 QCLHLALSIDSSHGLSQNNLAVLEAREGH--------------IERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      ..+++++...|.+...+..+|.++...|+              +++|++++++++..+|++   +...+..+...|
T Consensus        93 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~  165 (172)
T PRK02603         93 EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence            99999999999999999999999999887              688999999999999987   334444444444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.95  E-value=3.1e-09  Score=81.09  Aligned_cols=67  Identities=24%  Similarity=0.386  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy16607        572 AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQ  650 (677)
Q Consensus       572 ~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~  650 (677)
                      ++..|..+|.++.                   ..|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++
T Consensus         2 ~a~~~~~~g~~~~-------------------~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~   62 (69)
T PF13414_consen    2 NAEAWYNLGQIYF-------------------QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE   62 (69)
T ss_dssp             SHHHHHHHHHHHH-------------------HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            5678999999998                   9999999999999999999999999999999999999 7999999999


Q ss_pred             HHHHhCC
Q psy16607        651 AAAASSP  657 (677)
Q Consensus       651 ~al~~~p  657 (677)
                      ++++++|
T Consensus        63 ~al~l~P   69 (69)
T PF13414_consen   63 KALKLDP   69 (69)
T ss_dssp             HHHHHST
T ss_pred             HHHHcCc
Confidence            9999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.95  E-value=2.1e-08  Score=86.02  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHH
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIG  432 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la  432 (677)
                      +++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++...|++   ..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            33444444444444444444444444444332   2334444444444444444444444444444332   33344444


Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        433 VNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       433 ~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      .++...|++++|+.++++++...|++
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            44444444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2.7e-08  Score=94.80  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=113.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH  596 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~  596 (677)
                      ...+.-+.-++.-+..+|++.+-|..||.+|...|++..|...|.++++  +.|++++.+..++.++.            
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~------------  201 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALY------------  201 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHH------------
Confidence            4467777888888999999999999999999999999999999999999  89999999999999876            


Q ss_pred             hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                          .-.......++...+++++..+|.+..+.+.||..++..|++.+|...++..++..|.+..
T Consensus       202 ----~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         202 ----YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             ----HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence                0112334678999999999999999999999999999999999999999999999887653

>KOG1070|consensus

Probab=98.94  E-value=2.9e-07  Score=102.52  Aligned_cols=235  Identities=12%  Similarity=0.070  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCc----HHHHHHHHHHHHHcCChhHHHHHH
Q psy16607        341 REAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC-YPNE----VTIMTEMARIFEGLNNMPMSVKYY  414 (677)
Q Consensus       341 ~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~  414 (677)
                      .+..+-|++.+...| ..-.|........+.++.++|.+..++++.. ++..    ..+|..+-++...-|.-+...+.|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            334556666666677 5566777777777777888888888877753 3322    234555555555556666777778


Q ss_pred             HHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccch
Q psy16607        415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA  494 (677)
Q Consensus       415 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  494 (677)
                      ++|.+... ....+..|..+|...+++++|.++++.+++...+...+|..++..+++.++-++|...+.+|+..-|..+.
T Consensus      1521 eRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            87776543 35667778888888888888888888888887777888888888888888888888888888888877544


Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                      .......+.+-.        +.|+.+.+...|+..+.-+|...+.|.-+...-.+.|+.+.+..+|++++.+...+....
T Consensus      1600 v~~IskfAqLEF--------k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1600 VEFISKFAQLEF--------KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred             HHHHHHHHHHHh--------hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence            666656665554        888888888888888888888888888888888888888888888888888666666665


Q ss_pred             HHHHHHHHHH
Q psy16607        575 VWYNISHVAI  584 (677)
Q Consensus       575 ~~~~l~~~~~  584 (677)
                      .++..-.-|.
T Consensus      1672 fffKkwLeyE 1681 (1710)
T KOG1070|consen 1672 FFFKKWLEYE 1681 (1710)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.94  E-value=5.3e-06  Score=80.25  Aligned_cols=219  Identities=22%  Similarity=0.289  Sum_probs=169.3

Q ss_pred             cCCHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16607        337 LGLIREAQQQFNSALNQFTD---IEAFIRMIRVYIRLDQPIRAIDIGRNALD--CYPNEVTIMTEMARIFEGLNNMPMSV  411 (677)
Q Consensus       337 ~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  411 (677)
                      .+.+..+...+...+...+.   .......+..+...+++..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            47788888888888887774   68889999999999999999999999987  67888899999999999999999999


Q ss_pred             HHHHHHHHhCcCCHHHHHHHHH-HHHhCCChHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        412 KYYKLILKRDATCMEAIACIGV-NHFYNDQPEVALLFYRRLLQMGL---YNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       412 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      ..+.+++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999988877555666666 89999999999999999988776   3455566666666777777777777777777


Q ss_pred             hhcc-cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        488 LALN-ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       488 ~~p~-~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      ..+. .  ...+..++..+.        ..++++.|+..+..++...|.....+..++..+...+.++++...+.+++.
T Consensus       196 ~~~~~~--~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LNPDDD--AEALLNLGLLYL--------KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hCcccc--hHHHHHhhHHHH--------HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7766 4  556666666665        556666666666666666666555555555555544556666666666555

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.5e-08  Score=92.79  Aligned_cols=120  Identities=16%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC---ChHHHHHHHH
Q psy16607        373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND---QPEVALLFYR  449 (677)
Q Consensus       373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~  449 (677)
                      .+..+.-++.-+..+|++.+.|..+|.+|...|++..|...|.+++++.|++++.+..+|.++....   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3445555666677777777777777777777777777777777777777777777777777666543   3456777777


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      +++..+|.+..+...+|..++..|+|.+|+..++..++..|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            7777777777777777777777888888887777777777665

>KOG2471|consensus

Probab=98.92  E-value=2.3e-07  Score=92.53  Aligned_cols=113  Identities=18%  Similarity=0.162  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhh-CcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKA-CEF-------RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQ---------  353 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~-~p~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------  353 (677)
                      +..+-...++..|++.+|.+++...--. .+.       .....++++|.++++.|.|.-+..+|.++++.         
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~  321 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL  321 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence            3344445566678888888877654322 111       01122267888888888888888888888851         


Q ss_pred             CC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607        354 FT----------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG  403 (677)
Q Consensus       354 ~p----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  403 (677)
                      .|          ..+++++.|..|...|++-.|.++|.++++.+-.++..|..++.++..
T Consensus       322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            11          356778888888888888888888888888888888888888887754

>KOG1941|consensus

Probab=98.92  E-value=4.2e-07  Score=87.48  Aligned_cols=297  Identities=13%  Similarity=0.085  Sum_probs=210.9

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----C---CHHHHHHHHHH
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEF--RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF----T---DIEAFIRMIRV  366 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~la~~  366 (677)
                      |.-+++..++++|+..+.+.+..-..  .....+-.+..++..+|.|++++..--..+...    .   ..+++.++++.
T Consensus        13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~   92 (518)
T KOG1941|consen   13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS   92 (518)
T ss_pred             HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456678999999999888865421  111222335567788888888876654444422    2   45788899999


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHH
Q psy16607        367 YIRLDQPIRAIDIGRNALDCYPNE-----VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNH  435 (677)
Q Consensus       367 ~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~  435 (677)
                      +.+..++.+++.+-+..+......     ..+...++.++.-++.++++++.|+++++....+      ..++..+|.++
T Consensus        93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf  172 (518)
T KOG1941|consen   93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF  172 (518)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence            999999999999888777654322     3467778999999999999999999999875433      45678899999


Q ss_pred             HhCCChHHHHHHHHHHHHcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHH
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLY----N------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNI  501 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l  501 (677)
                      ....++++|+.+..++.++...    +      .-+++.++..+..+|....|.++.+++.++.-..    ........+
T Consensus       173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~  252 (518)
T KOG1941|consen  173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF  252 (518)
T ss_pred             HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            9999999999999888875322    2      2456778889999999999999999887654222    234556677


Q ss_pred             HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHHhhcc
Q psy16607        502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDM-----VVTCFERALSLALNE  570 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~p  570 (677)
                      +.+|.        ..|+.+.|..-|+.+.....      ....++...+.++....-..+     |++.-+++++++..-
T Consensus       253 aDIyR--------~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I  324 (518)
T KOG1941|consen  253 ADIYR--------SRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI  324 (518)
T ss_pred             HHHHH--------hcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence            88887        89999999999998874322      124456666777666554444     888888888754222


Q ss_pred             c----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        571 N----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       571 ~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      .    -...+..++.+|.                   ..|.-++-...+.++-
T Consensus       325 G~K~~vlK~hcrla~iYr-------------------s~gl~d~~~~h~~ra~  358 (518)
T KOG1941|consen  325 GAKLSVLKLHCRLASIYR-------------------SKGLQDELRAHVVRAH  358 (518)
T ss_pred             hhhHHHHHHHHHHHHHHH-------------------hccchhHHHHHHHHHH
Confidence            1    2255777888886                   7776666555555543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.92  E-value=7.8e-08  Score=85.96  Aligned_cols=198  Identities=12%  Similarity=0.154  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  470 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  470 (677)
                      ...++..|..|-..|-+.-|.-.|.+++.+.|+-++++..+|..+...|+++.|.+.|+..++++|....++.+.|..+.
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607        471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  550 (677)
Q Consensus       471 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  550 (677)
                      .-|++.-|.+.+.+-.+.+|++.+...|..+...           .-++.+|...+.+--+...+...-|+..+..+   
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-----------k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL---  210 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-----------KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL---  210 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-----------hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH---
Confidence            9999999999999999999998666666555433           34677776665544433333333333332222   


Q ss_pred             cCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        551 QQYDMVVTCFERALSLALN-----ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       551 g~~~~A~~~~~~al~~~~~-----p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                      |+..+ ...++++..-+.+     ..-.+.++.+|..+.                   ..|+.++|...|+-++..+
T Consensus       211 gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l-------------------~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         211 GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYL-------------------SLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-------------------ccccHHHHHHHHHHHHHHh
Confidence            22211 1233333331111     112355777777777                   8888888888888777643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.92  E-value=3.9e-08  Score=90.34  Aligned_cols=99  Identities=17%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      ....++.+|..+...|++++|+.+|++++...|+. ....++..+|.++.        ..|++++|+..+++++...|.+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA--------SNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCccc
Confidence            34455556666666666666666666666554432 11345666666665        6666666666666666666666


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                      ...+..+|.++...|+...+...++.++
T Consensus       106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~  133 (172)
T PRK02603        106 PSALNNIAVIYHKRGEKAEEAGDQDEAE  133 (172)
T ss_pred             HHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence            6666666666666666555554444443

>KOG3617|consensus

Probab=98.91  E-value=1.2e-06  Score=92.69  Aligned_cols=281  Identities=15%  Similarity=0.119  Sum_probs=163.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      ...|.....+|..++|+.+|++.-.       +-.+-..|...|.+++|.++.+.-=.+.  -...|++.|.-+...++.
T Consensus       804 akvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence            3456666777888888888887633       3345556666666666665544321111  133456666666666666


Q ss_pred             hHHHHHHHHH----------HHhCcC----------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-------------
Q psy16607        408 PMSVKYYKLI----------LKRDAT----------CMEAIACIGVNHFYNDQPEVALLFYRRLLQM-------------  454 (677)
Q Consensus       408 ~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------  454 (677)
                      +.|+++|+++          +..+|.          +...|...|..+...|+.+.|+.+|..+-..             
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~  954 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT  954 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence            6666666653          222332          2344455566666667777766666655332             


Q ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607        455 --------GLYNAELFNNLALCCFYSQQYDMVVTCFERA------LSLALNENAADVWYNISHVAILNALSTSVYNDQPE  520 (677)
Q Consensus       455 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~  520 (677)
                              ...+..+.+.+|+.|...|++.+|+.+|.++      +++..++.+.+-+.+++...         ...+.-
T Consensus       955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s---------~~~d~v 1025 (1416)
T KOG3617|consen  955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS---------GGSDLV 1025 (1416)
T ss_pred             hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc---------CchhHH
Confidence                    2345678899999999999999999988775      44555544444444444332         234445


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHH--------HHHHhhcc-chHHHHHHHHHHHHHhhcCCC
Q psy16607        521 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER--------ALSLALNE-NAADVWYNISHVAIITECSPF  591 (677)
Q Consensus       521 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~p-~~~~~~~~l~~~~~~~~~~p~  591 (677)
                      .|..+|++.-       .....-..+|.+.|.+.+|++.--+        .+...+++ .++..+..-+..+.       
T Consensus      1026 ~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~------- 1091 (1416)
T KOG3617|consen 1026 SAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE------- 1091 (1416)
T ss_pred             HHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH-------
Confidence            5555555431       1111223455666666666654211        11111233 34555555555555       


Q ss_pred             CcccchhhhHHhcCCCHHHHHHHHH------HHHcc----------------CCC---------ChHHHHHHHHHHHHcC
Q psy16607        592 SFSTHTSYLFIQGISDTRLAIQCLH------LALSI----------------DSS---------HGLSQNNLAVLEAREG  640 (677)
Q Consensus       592 ~~~~~~~~~~l~~~g~~~~A~~~~~------~al~~----------------~p~---------~~~~~~~la~~~~~~g  640 (677)
                                  ...+|++|...+-      .++.+                .|.         ...++..+|.++.++|
T Consensus      1092 ------------~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG 1159 (1416)
T KOG3617|consen 1092 ------------NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQG 1159 (1416)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence                        5666666655433      23322                111         1256788999999999


Q ss_pred             CHHHHHHHHHHH
Q psy16607        641 HIERASTYLQAA  652 (677)
Q Consensus       641 ~~~~A~~~~~~a  652 (677)
                      .|..|-+-|.+|
T Consensus      1160 ~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1160 AYHAATKKFTQA 1171 (1416)
T ss_pred             chHHHHHHHhhh
Confidence            999999888876

>KOG1070|consensus

Probab=98.91  E-value=2.1e-07  Score=103.62  Aligned_cols=220  Identities=11%  Similarity=0.040  Sum_probs=169.1

Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN----AELFNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~  481 (677)
                      -.+..+.|++.+.-+|+..-.|..+...+...++.++|.+.+++++.. ++..    ..+|..+-++...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344566777888888888888888888888888888888888888863 3322    24555555555566767777788


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy16607        482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE  561 (677)
Q Consensus       482 ~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  561 (677)
                      |++|.+.+..   ..++..|..+|.        ..+++++|.++|+.+++........|..++..+.+..+-+.|...+.
T Consensus      1520 FeRAcqycd~---~~V~~~L~~iy~--------k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1520 FERACQYCDA---YTVHLKLLGIYE--------KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred             HHHHHHhcch---HHHHHHHHHHHH--------HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence            8888776544   667777888887        78888888888888888777788888888888888888888888888


Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607        562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  641 (677)
Q Consensus       562 ~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  641 (677)
                      +|+......++.......+.+-.                   +.|+.+.+...|+-.+...|.-.+.|.-+...-.+.|+
T Consensus      1589 rAL~~lPk~eHv~~IskfAqLEF-------------------k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEF-------------------KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             HHHhhcchhhhHHHHHHHHHHHh-------------------hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence            88883222236666667777666                   88888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhC
Q psy16607        642 IERASTYLQAAAASS  656 (677)
Q Consensus       642 ~~~A~~~~~~al~~~  656 (677)
                      .+.++.+|++++.+.
T Consensus      1650 ~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            888888888888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.90  E-value=1.8e-08  Score=82.03  Aligned_cols=99  Identities=23%  Similarity=0.321  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      +++.+|.++...|++++|+..+++++.  ..|.+..++..+|.++.                   ..|++++|+..++++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~   60 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYY-------------------KLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence            477899999999999999999999998  78888899999999998                   999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  658 (677)
                      +...|.+..++..+|.++...|++++|...+.++++.+|+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999988874

>KOG2471|consensus

Probab=98.90  E-value=3.2e-06  Score=84.68  Aligned_cols=122  Identities=18%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      ++-..+.+-..+|+.-.|+..-++.+.   .|+-..++..+|.+|...              ++.-+.+..+|...+.--
T Consensus       511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq---~~~lS~~~kfLGHiYAaE--------------AL~lldr~seA~~HL~p~  573 (696)
T KOG2471|consen  511 IFANMAYVELELGDPIKALSAATKLLQ---LADLSKIYKFLGHIYAAE--------------ALCLLDRPSEAGAHLSPY  573 (696)
T ss_pred             HHHHHHHHHHHhcChhhHHHHHHHHHh---hhhhhhHHHHHHHHHHHH--------------HHHHcCChhhhhhccChh
Confidence            344566677788999999999999886   577788888888888622              223334444443333220


Q ss_pred             H-----------------------ccCCC----------C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Q psy16607        619 L-----------------------SIDSS----------H-----GLSQNNLAVLEAREGHIERASTYLQAAAASSP--Y  658 (677)
Q Consensus       619 l-----------------------~~~p~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~  658 (677)
                      +                       .++|.          .     ...+++||.++.-+|++++|..++..+..+-|  .
T Consensus       574 ~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v  653 (696)
T KOG2471|consen  574 LLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLV  653 (696)
T ss_pred             hcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccc
Confidence            0                       11111          1     23578999999999999999999999999888  5


Q ss_pred             ChHHHHHHHHHHHhcCCCC
Q psy16607        659 LYETHYNQAVISNLVSVIP  677 (677)
Q Consensus       659 ~~~~~~~la~~~~~~G~ip  677 (677)
                      ++++......+-.++|+.|
T Consensus       654 ~~~A~~lavyidL~~G~~q  672 (696)
T KOG2471|consen  654 NVQATVLAVYIDLMLGRSQ  672 (696)
T ss_pred             cHHHHHHHHHHHHhcCCCc
Confidence            6677776667777888764

>KOG3081|consensus

Probab=98.90  E-value=1.2e-06  Score=81.43  Aligned_cols=260  Identities=13%  Similarity=0.122  Sum_probs=178.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16607        331 GKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS  410 (677)
Q Consensus       331 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  410 (677)
                      .+-++..|+|..++..-.+.-...........+.+.|..+|++..-+......-   .....+...++.....-++.++-
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~   91 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI   91 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence            455666777777776666554443456666777777777777665544433321   11234445555555555555554


Q ss_pred             HHHHHHHHHhC-c-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607        411 VKYYKLILKRD-A-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  488 (677)
Q Consensus       411 ~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  488 (677)
                      +.-..+.+... . .+......-+.++...|++++|++.....     .+.++...-..++.++.+.+-|...++++.++
T Consensus        92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44444433322 2 23344455567888889999998877763     34456666677888899999999999999888


Q ss_pred             hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607        489 ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  568 (677)
Q Consensus       489 ~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  568 (677)
                      +.+.    .+..++..+. ...   ...+++.+|.-+|++.-+..|..+...+.++.|+..+++|++|...++.++.  .
T Consensus       167 ded~----tLtQLA~awv-~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--k  236 (299)
T KOG3081|consen  167 DEDA----TLTQLAQAWV-KLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--K  236 (299)
T ss_pred             chHH----HHHHHHHHHH-HHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence            7543    3444555553 000   1335689999999999998999999999999999999999999999999999  8


Q ss_pred             ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH-HHHHHHccCCCChH
Q psy16607        569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ-CLHLALSIDSSHGL  627 (677)
Q Consensus       569 ~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~-~~~~al~~~p~~~~  627 (677)
                      ++++++.+.++-.+-.                   ..|...++.. .+.+.....|.++.
T Consensus       237 d~~dpetL~Nliv~a~-------------------~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  237 DAKDPETLANLIVLAL-------------------HLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             cCCCHHHHHHHHHHHH-------------------HhCCChHHHHHHHHHHHhcCCcchH
Confidence            9999999999988877                   7887766554 55566666777653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.89  E-value=9e-08  Score=95.44  Aligned_cols=214  Identities=12%  Similarity=0.105  Sum_probs=140.4

Q ss_pred             CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--C----cHHHHHHHHHHHHHcCChhHHHH
Q psy16607        339 LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP--N----EVTIMTEMARIFEGLNNMPMSVK  412 (677)
Q Consensus       339 ~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~  412 (677)
                      ++++|...|.++             |.+|...+++++|...|.++....-  .    -...+...+.++.+. ++++|+.
T Consensus        30 ~~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~   95 (282)
T PF14938_consen   30 DYEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE   95 (282)
T ss_dssp             HHHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred             CHHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence            566666666665             5666666777777777766654321  1    122344555555444 8888888


Q ss_pred             HHHHHHHhCcC------CHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHH
Q psy16607        413 YYKLILKRDAT------CMEAIACIGVNHFYN-DQPEVALLFYRRLLQMGLY--N----AELFNNLALCCFYSQQYDMVV  479 (677)
Q Consensus       413 ~~~~al~~~p~------~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~  479 (677)
                      +|++++.+.-.      -...+..+|.+|... |++++|+++|++++.....  .    ...+..+|.++...|+|++|+
T Consensus        96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~  175 (282)
T PF14938_consen   96 CYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI  175 (282)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            88888876322      155778889999998 9999999999999986322  1    356778999999999999999


Q ss_pred             HHHHHHHhhhccc-----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHh
Q psy16607        480 TCFERALSLALNE-----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFY  549 (677)
Q Consensus       480 ~~~~~al~~~p~~-----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~  549 (677)
                      ..|+++....-++     .....+...+.++.        ..|++..|...+++....+|..     ......+..++..
T Consensus       176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L--------~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~  247 (282)
T PF14938_consen  176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHL--------AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE  247 (282)
T ss_dssp             HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH--------HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence            9999988754322     11233455566665        8899999999999999888743     3344555555543


Q ss_pred             --ccCHHHHHHHHHHHHHHhhccchHHHH
Q psy16607        550 --SQQYDMVVTCFERALSLALNENAADVW  576 (677)
Q Consensus       550 --~g~~~~A~~~~~~al~~~~~p~~~~~~  576 (677)
                        ...+.+|+.-|++...  +++-...++
T Consensus       248 ~D~e~f~~av~~~d~~~~--ld~w~~~~l  274 (282)
T PF14938_consen  248 GDVEAFTEAVAEYDSISR--LDNWKTKML  274 (282)
T ss_dssp             T-CCCHHHHCHHHTTSS-----HHHHHHH
T ss_pred             CCHHHHHHHHHHHcccCc--cHHHHHHHH
Confidence              4568888888887766  444444333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.88  E-value=1.1e-07  Score=84.61  Aligned_cols=117  Identities=14%  Similarity=0.096  Sum_probs=90.1

Q ss_pred             HcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhCCChH
Q psy16607        369 RLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPE  442 (677)
Q Consensus       369 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~  442 (677)
                      ..++...+...++..++.+|+.   ..+.+.+|.++...|++++|...|++++...|+.   ..+.+.++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            5677778877888888888877   4466778888888888888888888888876543   456777888888888888


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      +|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            88888865 33344556777788888888888888888888764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.88  E-value=3.6e-08  Score=85.76  Aligned_cols=112  Identities=8%  Similarity=-0.090  Sum_probs=98.9

Q ss_pred             HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607        531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL  610 (677)
Q Consensus       531 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~  610 (677)
                      .+.++.-+..+..|.-++..|++++|...|.-...  .+|.+.+.|..||.|+.                   .+++|++
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q-------------------~~k~y~~   89 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQ-------------------LKKQFQK   89 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH-------------------HHHHHHH
Confidence            34455567788889999999999999999999888  88999999999999998                   9999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                      |+..|..+..++++++...+..|.|+..+|+.++|+.+|+.+++ .|.+....-
T Consensus        90 Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331         90 ACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            99999999999999999999999999999999999999999998 577655443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.87  E-value=5.6e-08  Score=89.00  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHH
Q psy16607        340 IREAQQQFNSALNQFT---DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKY  413 (677)
Q Consensus       340 ~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~  413 (677)
                      +..+...+...++..+   ....++.+|.++...|++++|+..|++++.+.|+.   ..++.++|.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444444433332   34555666666666666666666666666555432   23566666666666666666666


Q ss_pred             HHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        414 YKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       414 ~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      |++++.+.|.....+..+|.++.
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHH
Confidence            66666666666666666666665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.87  E-value=9.7e-08  Score=102.13  Aligned_cols=126  Identities=14%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ--------QYDMVVTCFERALSLALNENAADVWYNISHVAIITE  587 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~  587 (677)
                      .+....|+.+|+++++.+|+++.++-.++.++....        +...+.....+++.+..++..+.++..+|..+.   
T Consensus       355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~---  431 (517)
T PRK10153        355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL---  431 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH---
Confidence            345789999999999999999999999888776542        344566666666663346777888998998887   


Q ss_pred             cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                                      ..|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       432 ----------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        432 ----------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ----------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence                            89999999999999999999 5889999999999999999999999999999999885

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.87  E-value=2.7e-08  Score=80.98  Aligned_cols=97  Identities=22%  Similarity=0.362  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  473 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  473 (677)
                      ++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+...+..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            34445555555555555555555555555554555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHhhhc
Q psy16607        474 QYDMVVTCFERALSLAL  490 (677)
Q Consensus       474 ~~~~A~~~~~~al~~~p  490 (677)
                      ++++|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            55555555555554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.86  E-value=1.6e-05  Score=77.65  Aligned_cols=292  Identities=11%  Similarity=0.021  Sum_probs=216.4

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhh-CcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607        296 EYLYHHENDVASAMDLAVESTKA-CEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP  373 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~  373 (677)
                      |++..-.|+-..|.+.-.+.-+. ..+..+.++..-++.-.-.|++++|.+-|+.++.... ..-.+..+-.-..+.|..
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Gar  170 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAR  170 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccH
Confidence            33344468888999888887743 3344566666777888889999999999999876433 222333333444578999


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC---cCC---HHHHHHHHHHH-HhCCChHHHHH
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD---ATC---MEAIACIGVNH-FYNDQPEVALL  446 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~---~~~~~~la~~~-~~~g~~~~A~~  446 (677)
                      +.|+.+-+++....|.-+.++...-...+..|+++.|+++.+......   ++-   ..+...-+... ....+...|..
T Consensus       171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            999999999999999999888888888899999999999998765432   221   11111112211 22346888999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHH-HHHH
Q psy16607        447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV-ALLF  525 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~-A~~~  525 (677)
                      ...++.++.|+....-..-+..+++.|+..++-.+++.+.+..|..   .+    +..|.      +.+.|+... =++-
T Consensus       251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~i----a~lY~------~ar~gdta~dRlkR  317 (531)
T COG3898         251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DI----ALLYV------RARSGDTALDRLKR  317 (531)
T ss_pred             HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HH----HHHHH------HhcCCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999984   33    33333      114455432 2344


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607        526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI  605 (677)
Q Consensus       526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~  605 (677)
                      .++...+.|++.+....++..-...|+|..|..--+.+..  ..|.. .++..++.+-.                  ...
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre-s~~lLlAdIee------------------Aet  376 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE-SAYLLLADIEE------------------AET  376 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh-hHHHHHHHHHh------------------hcc
Confidence            4555578899999999999999999999999999888887  55543 44555666554                  156


Q ss_pred             CCHHHHHHHHHHHHcc
Q psy16607        606 SDTRLAIQCLHLALSI  621 (677)
Q Consensus       606 g~~~~A~~~~~~al~~  621 (677)
                      |+-.+....+-+++..
T Consensus       377 GDqg~vR~wlAqav~A  392 (531)
T COG3898         377 GDQGKVRQWLAQAVKA  392 (531)
T ss_pred             CchHHHHHHHHHHhcC
Confidence            9999999999999874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.83  E-value=1.8e-08  Score=76.75  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhCc
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKLILKRDA  422 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  422 (677)
                      ..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            445555555555555555555555555555555555555555555555 45555555555555544

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.83  E-value=1.8e-08  Score=75.66  Aligned_cols=57  Identities=21%  Similarity=0.159  Sum_probs=54.2

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                      ..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            999999999999999999999999999999999999999999999999999999985

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.82  E-value=2.2e-07  Score=82.63  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             hCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcc
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALST  512 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~  512 (677)
                      ..++...+...++..++..|+.   ..+.+.+|.+++..|++++|+..|++++...|++ ....+...++.++.      
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~------   96 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL------   96 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH------
Confidence            4566666766777777777766   3456667777777777777777777777766543 22345666777776      


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                        ..|++++|+..++. +...+..+..+..+|.++...|++++|+..|++++
T Consensus        97 --~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   97 --QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             --HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence              77778877777755 33444556677778888888888888888888764

>KOG3081|consensus

Probab=98.81  E-value=1.7e-06  Score=80.40  Aligned_cols=255  Identities=14%  Similarity=0.055  Sum_probs=170.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHH
Q psy16607        365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA  444 (677)
Q Consensus       365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  444 (677)
                      +-++-.|+|..++....+.-... ........+.+.|..+|++...+......-   .....+...++.....-++.+.-
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~   91 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI   91 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence            44556788888887776654333 567777888888888888776655443322   12345556666666666666655


Q ss_pred             HHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHH
Q psy16607        445 LLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVA  522 (677)
Q Consensus       445 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A  522 (677)
                      +.-..+.+...  ..+......-+.+|...|++++|.+...+...       .++...-..++.        ++.+.+-|
T Consensus        92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-------lE~~Al~VqI~l--------k~~r~d~A  156 (299)
T KOG3081|consen   92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-------LEAAALNVQILL--------KMHRFDLA  156 (299)
T ss_pred             HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-------HHHHHHHHHHHH--------HHHHHHHH
Confidence            55544444322  22334555567788888999999888877332       333333334444        67778888


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607        523 LLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS  598 (677)
Q Consensus       523 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~  598 (677)
                      ...++++.+.+.+  ..+..||.++.+    .+++.+|.-+|+..-+  ..+..+......+.|.+              
T Consensus       157 ~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l--------------  218 (299)
T KOG3081|consen  157 EKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHL--------------  218 (299)
T ss_pred             HHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHH--------------
Confidence            8888888776544  344445555543    2457788888888776  56777778888888888              


Q ss_pred             hhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChH
Q psy16607        599 YLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS-TYLQAAAASSPYLYE  661 (677)
Q Consensus       599 ~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~  661 (677)
                           .+|++++|...++.++..++++++++.++-.+-...|.-.++. +...+.....|+++-
T Consensus       219 -----~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  219 -----QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             -----HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence                 8888888888888888888888888888888777777765554 445666666777654

>KOG2053|consensus

Probab=98.79  E-value=0.0002  Score=77.55  Aligned_cols=224  Identities=13%  Similarity=0.015  Sum_probs=144.0

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDI  379 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~  379 (677)
                      ..+++.+|+....+.++.. ++...+....|..+.++|+.++|..+++..-...+ +..++-.+-.+|..++++++|..+
T Consensus        21 d~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            3588999999999999999 45566668889999999999999977766555555 777888899999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-CCChH---------HHHHHHH
Q psy16607        380 GRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPE---------VALLFYR  449 (677)
Q Consensus       380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~~~~  449 (677)
                      |++++..+|. -+.+..+-.+|.+.+.|.+-.+.--+..+..|+++-.+.....+..+ ....+         -|...++
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~  178 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ  178 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence            9999999997 77888888888888887766555555555667665544444333332 22222         2334444


Q ss_pred             HHHHcC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH-HhhhcccchHHHH-HHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607        450 RLLQMG-LYNAE-LFNNLALCCFYSQQYDMVVTCFERA-LSLALNENAADVW-YNISHVAILNALSTSVYNDQPEVALLF  525 (677)
Q Consensus       450 ~al~~~-~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~-~~l~~~~~l~~l~~~~~~~~~~~A~~~  525 (677)
                      +.++.. +-... =....-.++..+|++++|...+..- .+..+..  .... ......+.        ..+++.+-.+.
T Consensus       179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~--~~~l~~~~~dllk--------~l~~w~~l~~l  248 (932)
T KOG2053|consen  179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA--NLYLENKKLDLLK--------LLNRWQELFEL  248 (932)
T ss_pred             HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHH--------HhcChHHHHHH
Confidence            444444 21111 1122234555677777777777332 2222221  2222 22222333        45666666666


Q ss_pred             HHHHHHcCCCc
Q psy16607        526 YRRLLQMGLYN  536 (677)
Q Consensus       526 ~~~al~~~p~~  536 (677)
                      ..+++..++++
T Consensus       249 ~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  249 SSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHhCCcc
Confidence            66666666655

>PRK11906 transcriptional regulator; Provisional

Probab=98.79  E-value=4.8e-07  Score=91.76  Aligned_cols=160  Identities=13%  Similarity=0.062  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHH---ccCC-CHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCc
Q psy16607        327 KVQLGKCYFSLGL---IREAQQQFNSAL---NQFT-DIEAFIRMIRVYIRL---------DQPIRAIDIGRNALDCYPNE  390 (677)
Q Consensus       327 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~p-~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~  390 (677)
                      .+..|...+..+.   .+.|+.+|.+++   ..+| ...++..++.|+...         ....+|.+..+++++++|.+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            3677777766654   567899999999   7888 788888888888764         23567888999999999999


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH-H
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC-C  469 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~  469 (677)
                      +.++..+|.+....++++.|...|++++.++|+.+.+++..|.++...|+.++|++.++++++++|....+-...-.+ .
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~  417 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM  417 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999876654444444 4


Q ss_pred             HHcCCHHHHHHHHHHHH
Q psy16607        470 FYSQQYDMVVTCFERAL  486 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al  486 (677)
                      +-....+.|+..|-+-.
T Consensus       418 ~~~~~~~~~~~~~~~~~  434 (458)
T PRK11906        418 YVPNPLKNNIKLYYKET  434 (458)
T ss_pred             HcCCchhhhHHHHhhcc
Confidence            44566777887776543

>PRK11906 transcriptional regulator; Provisional

Probab=98.78  E-value=3.2e-07  Score=93.02  Aligned_cols=118  Identities=12%  Similarity=0.092  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST  595 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~  595 (677)
                      .....+|.+..+++++++|.++.++..+|.++...++++.|...|++++.  ++|+.+.+|+..|.+..           
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~-----------  383 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHF-----------  383 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHH-----------
Confidence            34567889999999999999999999999999999999999999999999  99999999999999988           


Q ss_pred             chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy16607        596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERASTYLQAAAA  654 (677)
Q Consensus       596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  654 (677)
                              ..|+.++|++.++++++++|....+-...-++ .+-....++|+..|-+--+
T Consensus       384 --------~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        384 --------HNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             --------HcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence                    99999999999999999999876554444344 4555678889988876544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.77  E-value=1.6e-08  Score=80.40  Aligned_cols=80  Identities=21%  Similarity=0.349  Sum_probs=41.4

Q ss_pred             cCChhHHHHHHHHHHHhCcC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        404 LNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       404 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  481 (677)
                      .|+++.|+.+|+++++..|.  +...++.+|.+++..|++++|+.++++ .+.++.+...++.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34555555555555555553  233444455555555555555555555 444444455555555555555555555555


Q ss_pred             HHH
Q psy16607        482 FER  484 (677)
Q Consensus       482 ~~~  484 (677)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.76  E-value=4.4e-07  Score=90.52  Aligned_cols=167  Identities=14%  Similarity=0.151  Sum_probs=111.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC------C
Q psy16607        466 ALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL------Y  535 (677)
Q Consensus       466 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p------~  535 (677)
                      |.+|...|++++|..+|.++.......    .....+...+.++.         ..++++|+.+|++++.+.-      .
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k---------~~~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK---------KGDPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------hhCHHHHHHHHHHHHHHHHhcCcHHH
Confidence            455555566666666666554433211    12333444444443         3377777777777764321      1


Q ss_pred             cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607        536 NAELFNNLALCCFYS-QQYDMVVTCFERALSLALNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL  610 (677)
Q Consensus       536 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~  610 (677)
                      -..++..+|.+|... |++++|+++|++|++.....+.    ..++..++.++.                   ..|+|++
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-------------------~l~~y~~  173 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-------------------RLGRYEE  173 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-------------------HTT-HHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-------------------HhCCHHH
Confidence            145677899999998 9999999999999986433332    356778888888                   9999999


Q ss_pred             HHHHHHHHHccCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        611 AIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       611 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                      |++.|++.....-++       ...+...+.|+...|++..|...+++....+|...
T Consensus       174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            999999998753322       13456778899999999999999999999998653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.76  E-value=3e-08  Score=78.87  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=40.3

Q ss_pred             cCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607        551 QQYDMVVTCFERALSLALNEN--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS  628 (677)
Q Consensus       551 g~~~~A~~~~~~al~~~~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~  628 (677)
                      |++++|+.+++++++  ..|.  +...++.+|.|+.                   +.|++++|+..+++ ...++.+...
T Consensus         3 ~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~-------------------~~~~y~~A~~~~~~-~~~~~~~~~~   60 (84)
T PF12895_consen    3 GNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYF-------------------QQGKYEEAIELLQK-LKLDPSNPDI   60 (84)
T ss_dssp             T-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHH-------------------HTTHHHHHHHHHHC-HTHHHCHHHH
T ss_pred             ccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHH-------------------HCCCHHHHHHHHHH-hCCCCCCHHH
Confidence            455555555555555  3331  3344445555555                   55555555555555 4445555555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        629 QNNLAVLEAREGHIERASTYLQA  651 (677)
Q Consensus       629 ~~~la~~~~~~g~~~~A~~~~~~  651 (677)
                      .+.+|.++.++|++++|+..|++
T Consensus        61 ~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   61 HYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHhc
Confidence            55555555555555555555554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.75  E-value=4.5e-08  Score=73.53  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC  424 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  424 (677)
                      .+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555543

>KOG0543|consensus

Probab=98.74  E-value=1.5e-07  Score=93.05  Aligned_cols=109  Identities=17%  Similarity=0.259  Sum_probs=58.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT----------------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV  391 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  391 (677)
                      -..|..+++.|+|..|...|++++..-.                ...++.+++.|+.++++|.+|+..+.++|..+|+|.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            3567888888888888888888776321                022344444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      .+++..|.++..+|+|+.|+..|++++++.|.|-.+...+..+-.
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.74  E-value=4.6e-07  Score=97.00  Aligned_cols=119  Identities=11%  Similarity=0.030  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHh--CcCCHHHHHHHHHHHHhCCChH
Q psy16607        373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN--------NMPMSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPE  442 (677)
Q Consensus       373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~  442 (677)
                      ..+|+.+|+++++++|++..++..++.++....        +...+.....+++.+  ++.++.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            445566666666666666555555555443321        223444445554443  5555666777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      +|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.+
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            77777777777777 46677777777777777777777777777777775

>PRK15331 chaperone protein SicA; Provisional

Probab=98.73  E-value=1.9e-07  Score=81.38  Aligned_cols=100  Identities=10%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  467 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  467 (677)
                      ++..+..+..|.-++..|++++|...|+-....+|.+.+.|..||.++...++|++|+..|..+..++++++...+..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            33444555555555555555555555555555555555555555555555555555555555555555555555555566


Q ss_pred             HHHHcCCHHHHHHHHHHHHh
Q psy16607        468 CCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~  487 (677)
                      |+..+|+.+.|..+|+.++.
T Consensus       114 C~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66666666666665555555

>KOG3617|consensus

Probab=98.73  E-value=7.8e-06  Score=86.68  Aligned_cols=313  Identities=12%  Similarity=0.069  Sum_probs=201.9

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHccCCCHHHHHHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQF------------NSALNQFTDIEAFIRMIRV  366 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~la~~  366 (677)
                      |...|+.+.|.+..+-+-     ++..| -++|....+..+.+-|.-++            +++.+.+.  +.-...+.+
T Consensus       738 yvtiG~MD~AfksI~~Ik-----S~~vW-~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIK-----SDSVW-DNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHHh-----hhHHH-HHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHH
Confidence            344599998887766543     34445 57777777666665555443            33332221  444566777


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHH
Q psy16607        367 YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL  446 (677)
Q Consensus       367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  446 (677)
                      ...+|..++|..+|++.-.        +-.+-..|...|.+++|.+..+.--++  .--..+++.+..+...++.+.|++
T Consensus       810 AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Ale  879 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALE  879 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHH
Confidence            7889999999999998754        335667888999999998876542222  124578899999999999999999


Q ss_pred             HHHHH----------HHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        447 FYRRL----------LQMGL----------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       447 ~~~~a----------l~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      +|+++          +..+|          .++..|...|..+...|+.+.|+.+|..+-          -|+.+..+..
T Consensus       880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C  949 (1416)
T KOG3617|consen  880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKC  949 (1416)
T ss_pred             HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEe
Confidence            99874          23333          245677788999999999999999998753          3445555544


Q ss_pred             HhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH------hhccchHHHHHHHH
Q psy16607        507 LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------ALNENAADVWYNIS  580 (677)
Q Consensus       507 l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~p~~~~~~~~l~  580 (677)
                              .+|+.++|....++     ..+-.+.+.+|..|...|++.+|+..|.+|-..      ....+..+-+.+++
T Consensus       950 --------~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen  950 --------IQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred             --------eccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                    77999988776654     456778899999999999999999998876542      22222223333333


Q ss_pred             HHHHHhhc---CC--CCccc--chhhhHHhcCCCHHHHHHHHHHH-----H-----ccCC-CChHHHHHHHHHHHHcCCH
Q psy16607        581 HVAIITEC---SP--FSFST--HTSYLFIQGISDTRLAIQCLHLA-----L-----SIDS-SHGLSQNNLAVLEAREGHI  642 (677)
Q Consensus       581 ~~~~~~~~---~p--~~~~~--~~~~~~l~~~g~~~~A~~~~~~a-----l-----~~~p-~~~~~~~~la~~~~~~g~~  642 (677)
                      ..-.....   ..  ..-..  +.....|.+.|.+.+|++..=+.     +     .++| .++..+..-+..+....+|
T Consensus      1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred             hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence            21100000   00  00000  01112445666666666543221     1     2344 3577788888888899999


Q ss_pred             HHHHHHHHHH
Q psy16607        643 ERASTYLQAA  652 (677)
Q Consensus       643 ~~A~~~~~~a  652 (677)
                      ++|...+-.+
T Consensus      1097 ekAV~lL~~a 1106 (1416)
T KOG3617|consen 1097 EKAVNLLCLA 1106 (1416)
T ss_pred             HHHHHHHHHH
Confidence            9998775443

>KOG4648|consensus

Probab=98.72  E-value=6.2e-09  Score=99.01  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=64.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      -..|.-|+++|.|++|+.+|.+.+..+| ++..+.+.+.+|+++..+..|..-+..++.++.....+|...+.+-..+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            3566666666666666666666666666 666666666666666666666666666666666556666666666666666


Q ss_pred             hhHHHHHHHHHHHhCcCCHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEA  427 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~  427 (677)
                      ..+|.+.++.++++.|++.+.
T Consensus       181 ~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHH
Confidence            666666666666666654443

>KOG0543|consensus

Probab=98.71  E-value=7e-07  Score=88.32  Aligned_cols=98  Identities=18%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      ++.+++.|+.++++|.+|+....+++.  .+|++..+++..|.++.                   .+|+|+.|+..|+++
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l-------------------~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALL-------------------ALGEYDLARDDFQKA  317 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHH-------------------hhccHHHHHHHHHHH
Confidence            456667777777777777777777776  66777777777777766                   777777777777777


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERA-STYLQAAAASSP  657 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p  657 (677)
                      +++.|.|..+...+..+-.+..++.+. .+.|..++...+
T Consensus       318 ~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  318 LKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            777777766666666666555544433 566666665443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.67  E-value=5.6e-07  Score=91.95  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=70.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16607        332 KCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSV  411 (677)
Q Consensus       332 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  411 (677)
                      ..+...++++.|+..|++..+.+|+  +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            3344445666666666666655553  23345566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607        412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  449 (677)
Q Consensus       412 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  449 (677)
                      .+.++++...|.+...|+.|+.+|...|+++.|+..++
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            66666666666666666666666666666666665554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.67  E-value=7.9e-07  Score=86.45  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=36.6

Q ss_pred             CChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC---CHHHHHHHHHHHHhCCChHHH
Q psy16607        371 DQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT---CMEAIACIGVNHFYNDQPEVA  444 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A  444 (677)
                      |++++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|+   .+++++.+|.++...|++++|
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A  236 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA  236 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence            44444444444444444433   234444444444444444444444444433333   233344444444444444444


Q ss_pred             HHHHHHHHHcCCCC
Q psy16607        445 LLFYRRLLQMGLYN  458 (677)
Q Consensus       445 ~~~~~~al~~~~~~  458 (677)
                      ...|+++++..|++
T Consensus       237 ~~~~~~vi~~yP~s  250 (263)
T PRK10803        237 KAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHCcCC
Confidence            44444444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.66  E-value=7.9e-07  Score=86.46  Aligned_cols=108  Identities=11%  Similarity=0.071  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        536 NAELFNNLALCC-FYSQQYDMVVTCFERALSLALNENA---ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       536 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      +...++..+..+ .+.|+|++|+..|+..+.  ..|+.   +.+++.+|.+|.                   ..|++++|
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~-------------------~~g~~~~A  199 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNY-------------------NKGKKDDA  199 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHH-------------------HcCCHHHH
Confidence            346677777766 567999999999999999  77876   579999999999                   99999999


Q ss_pred             HHHHHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        612 IQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       612 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                      +..|+++++..|++   +++++.+|.++...|++++|+..|+++++..|+...+..
T Consensus       200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            99999999888775   688999999999999999999999999999999876543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.66  E-value=0.00053  Score=67.39  Aligned_cols=290  Identities=13%  Similarity=-0.003  Sum_probs=215.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQF---TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-VTIMTEMARIFEG  403 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~  403 (677)
                      ..-|.+-...|+-..|.+.-.+.-+.-   ..+-++..-++.-.-.|+++.|.+-|+.++. +|+. .-.+..+-.-...
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence            355666677889999988888776432   2555666677788888999999999998765 3322 2233344444567


Q ss_pred             cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCH-----HHHHHHHHHHHHcCCH
Q psy16607        404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG---LYNA-----ELFNNLALCCFYSQQY  475 (677)
Q Consensus       404 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~-----~~~~~la~~~~~~g~~  475 (677)
                      .|..+.|..+-+++....|.-..++...-......|+++.|+++.+......   ++..     ..+...+... ...+.
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp  245 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADP  245 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence            8999999999999999999988888888888889999999999998766532   2211     1111122222 23467


Q ss_pred             HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q psy16607        476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  555 (677)
Q Consensus       476 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  555 (677)
                      ..|...-..+.++.|+-  ..+-..-+..+.        +.|+..++-..++.+.+..|.-     .++..|....--+.
T Consensus       246 ~~Ar~~A~~a~KL~pdl--vPaav~AAralf--------~d~~~rKg~~ilE~aWK~ePHP-----~ia~lY~~ar~gdt  310 (531)
T COG3898         246 ASARDDALEANKLAPDL--VPAAVVAARALF--------RDGNLRKGSKILETAWKAEPHP-----DIALLYVRARSGDT  310 (531)
T ss_pred             HHHHHHHHHHhhcCCcc--chHHHHHHHHHH--------hccchhhhhhHHHHHHhcCCCh-----HHHHHHHHhcCCCc
Confidence            88888888999999886  666666666665        8999999999999999888753     24455555555556


Q ss_pred             HHHHHHHHHHHh-hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607        556 VVTCFERALSLA-LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  634 (677)
Q Consensus       556 A~~~~~~al~~~-~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  634 (677)
                      ++.-++++-.+. +.|++.+....++..-.                   ..|++..|...-+.+....|. ..++..++.
T Consensus       311 a~dRlkRa~~L~slk~nnaes~~~va~aAl-------------------da~e~~~ARa~Aeaa~r~~pr-es~~lLlAd  370 (531)
T COG3898         311 ALDRLKRAKKLESLKPNNAESSLAVAEAAL-------------------DAGEFSAARAKAEAAAREAPR-ESAYLLLAD  370 (531)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHH-------------------hccchHHHHHHHHHHhhhCch-hhHHHHHHH
Confidence            666666665432 67899988888888877                   999999999999999988886 456777888


Q ss_pred             HHHHc-CCHHHHHHHHHHHHH
Q psy16607        635 LEARE-GHIERASTYLQAAAA  654 (677)
Q Consensus       635 ~~~~~-g~~~~A~~~~~~al~  654 (677)
                      +.... |+-.++...+-+++.
T Consensus       371 IeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         371 IEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHhhccCchHHHHHHHHHHhc
Confidence            87765 999999999999986

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.65  E-value=7.7e-07  Score=90.97  Aligned_cols=125  Identities=13%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  438 (677)
                      ....+..++...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.++++..|.+...+...+..+...
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            3344556666778999999999999998874   5667899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      ++++.|+.+.++++...|.+...|..++.+|...|+++.|+..+..+-
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999998887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=8.5e-07  Score=74.57  Aligned_cols=97  Identities=18%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC---c
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---N  536 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~---~  536 (677)
                      +++.+|.++-..|+.++|+.+|++++...... ....++..+|..+.        ..|++++|+..+++.+...|+   +
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr--------~LG~~deA~~~L~~~~~~~p~~~~~   74 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR--------NLGRYDEALALLEEALEEFPDDELN   74 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHCCCcccc
Confidence            44555556666666666666666665543332 22445555666665        666666666666666665555   5


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      ......++.++...|++++|+..+-.++.
T Consensus        75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   75 AALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55556666667777777777766666554

>KOG2053|consensus

Probab=98.60  E-value=0.00016  Score=78.33  Aligned_cols=226  Identities=12%  Similarity=0.046  Sum_probs=168.8

Q ss_pred             HHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHH
Q psy16607        335 FSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY  413 (677)
Q Consensus       335 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  413 (677)
                      ...+++.+|++...+.++..| ...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            456889999999999999999 5677788899999999999999888887777788888899999999999999999999


Q ss_pred             HHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHH---------HHHHHH
Q psy16607        414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN-LALCCFYSQQYDM---------VVTCFE  483 (677)
Q Consensus       414 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~---------A~~~~~  483 (677)
                      |++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++..+.. +..++......+.         |...++
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~  178 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ  178 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence            9999999998 8888888889999888887776666677788888765444 4444444433333         445556


Q ss_pred             HHHhhh-cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607        484 RALSLA-LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL--QMGLYNAELFNNLALCCFYSQQYDMVVTCF  560 (677)
Q Consensus       484 ~al~~~-p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  560 (677)
                      +.++.. +-....++...+ .++.        ..|++++|...+..-+  ...+.+...-..-...+...+++.+-.+..
T Consensus       179 ~~l~~~gk~~s~aE~~Lyl-~iL~--------~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~  249 (932)
T KOG2053|consen  179 KLLEKKGKIESEAEIILYL-LILE--------LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS  249 (932)
T ss_pred             HHhccCCccchHHHHHHHH-HHHH--------hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence            666555 222112222222 2222        5789999999995433  344444555556677778889999988888


Q ss_pred             HHHHHHhhccch
Q psy16607        561 ERALSLALNENA  572 (677)
Q Consensus       561 ~~al~~~~~p~~  572 (677)
                      .+.+.  ..+++
T Consensus       250 ~~Ll~--k~~Dd  259 (932)
T KOG2053|consen  250 SRLLE--KGNDD  259 (932)
T ss_pred             HHHHH--hCCcc
Confidence            88888  56665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.59  E-value=1.2e-07  Score=72.03  Aligned_cols=66  Identities=23%  Similarity=0.136  Sum_probs=61.4

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      ..|++++|+..|++++..+|++.+++..+|.++.+.|++++|...+++++..+|+++..+..++.+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            789999999999999999999999999999999999999999999999999999998888777653

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.58  E-value=1.5e-06  Score=73.08  Aligned_cols=91  Identities=20%  Similarity=0.183  Sum_probs=46.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EVTIMTEMARI  400 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~  400 (677)
                      +.+|.++-..|+.++|+..|++++....    ...+++.+|..+..+|++++|+..+++.+...|+   +..+...++.+
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            4455555555555555555555555332    2344555555555555555555555555555444   44444445555


Q ss_pred             HHHcCChhHHHHHHHHHH
Q psy16607        401 FEGLNNMPMSVKYYKLIL  418 (677)
Q Consensus       401 ~~~~g~~~~A~~~~~~al  418 (677)
                      +...|++++|+..+-.++
T Consensus        85 L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            555555555555554443

>KOG4648|consensus

Probab=98.58  E-value=3.4e-08  Score=94.11  Aligned_cols=188  Identities=11%  Similarity=0.021  Sum_probs=126.8

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh
Q psy16607        295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP  373 (677)
Q Consensus       295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~  373 (677)
                      -|.-|+.+|+|++|+.+|.+.+...|.+.... .+.+.+|++...|..|..-+..++.++. ...+|...+.+-..+|..
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~-~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYH-INRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccch-hhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            46678889999999999999999997655544 7999999999999999999999999987 889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHH---------HHHHHHHhCCChHHH
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA---------CIGVNHFYNDQPEVA  444 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------~la~~~~~~g~~~~A  444 (677)
                      .+|.+-++.++.+.|++.+..-.++.+..    ..++    +-+.+..|....+..         .-|..+...|.++.+
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~  253 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVP  253 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccccc
Confidence            99999999999999987776554444322    2221    112222232222211         224444445555555


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       445 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      +.++-+-+.....+..+..+ +..+.+..+++.++....+++..+|..
T Consensus       254 i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~  300 (536)
T KOG4648|consen  254 VVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP  300 (536)
T ss_pred             eeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence            55555444443333333333 455555555555555555555544443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.54  E-value=1e-05  Score=70.88  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=122.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHH
Q psy16607        467 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ-MGLYNAELFNNLAL  545 (677)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~  545 (677)
                      ....+.=+++....-..+.+...|.   ..-.+.++..+.        +.|++.+|...|++++. ..-.++..+..++.
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApT---vqnr~rLa~al~--------elGr~~EA~~hy~qalsG~fA~d~a~lLglA~  132 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPT---VQNRYRLANALA--------ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQ  132 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchh---HHHHHHHHHHHH--------HhhhhhhhHHHHHHHhccccCCCHHHHHHHHH
Confidence            3334444555566666666677776   566778888887        88999999999999884 56678888999999


Q ss_pred             HHHhccCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607        546 CCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS  623 (677)
Q Consensus       546 ~~~~~g~~~~A~~~~~~al~~~~~p--~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p  623 (677)
                      ..+..+++..|...+++..+  .+|  ..++....++..+.                   ..|++.+|...|+.++...|
T Consensus       133 Aqfa~~~~A~a~~tLe~l~e--~~pa~r~pd~~Ll~aR~la-------------------a~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         133 AQFAIQEFAAAQQTLEDLME--YNPAFRSPDGHLLFARTLA-------------------AQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHhhccHHHHHHHHHHHhh--cCCccCCCCchHHHHHHHH-------------------hcCCchhHHHHHHHHHHhCC
Confidence            99999999999999999988  444  45567778888887                   99999999999999999887


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        624 SHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       624 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      + +.+....+..+.++|+.++|..-+....+
T Consensus       192 g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         192 G-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             C-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            6 67778888999999988887766655443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.50  E-value=6.4e-07  Score=69.02  Aligned_cols=67  Identities=22%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607        602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  668 (677)
Q Consensus       602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  668 (677)
                      +...+++++|++++++++.++|+++..|..+|.++...|++++|+..|+++++..|+++.+....+.
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3499999999999999999999999999999999999999999999999999999999988766554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.49  E-value=4.5e-05  Score=71.52  Aligned_cols=165  Identities=11%  Similarity=-0.009  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHH
Q psy16607        327 KVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IMTEMAR  399 (677)
Q Consensus       327 ~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~  399 (677)
                      ++..|...+..|++++|+..|+.+....|    ...+...++.++++.+++++|+...++-+.++|.++.   +++..|.
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            36778888888888888888888887776    5678888888888888888888888888888877654   4566666


Q ss_pred             HHHHcC--------ChhHHHHHHHHHHHhCcCCH-----------------HHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        400 IFEGLN--------NMPMSVKYYKLILKRDATCM-----------------EAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       400 ~~~~~g--------~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      ++...=        -..+|+..|+..+...|++.                 ..-..+|..|.+.|.+..|+..++.+++.
T Consensus       117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            655331        24567777888888888641                 11235688899999999999999999998


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        455 GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       455 ~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      .|+.   .+++..+..+|..+|-.++|...-.-.-...|+
T Consensus       197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~  236 (254)
T COG4105         197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD  236 (254)
T ss_pred             cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence            7664   467888889999999999987765433333344

>KOG2796|consensus

Probab=98.48  E-value=0.00022  Score=66.33  Aligned_cols=126  Identities=15%  Similarity=0.166  Sum_probs=81.4

Q ss_pred             cCCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh--hc--cchHHHHHHHHHHHHHhhcC
Q psy16607        515 YNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LN--ENAADVWYNISHVAIITECS  589 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~--p~~~~~~~~l~~~~~~~~~~  589 (677)
                      -.|.|.-.+..+.+.++.+ |.++.....+|.+-.+.|+.+.|..+|++.-+..  ++  .....+..+.+.++.     
T Consensus       189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-----  263 (366)
T KOG2796|consen  189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-----  263 (366)
T ss_pred             cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-----
Confidence            5566666666666666655 4556666666677777777776766666444311  11  122344555555555     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                                    -.+++.+|...|.+++..+|.++.+.++.+.|+.-.|+..+|++..+.+++..|..
T Consensus       264 --------------g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  264 --------------GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             --------------cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence                          66777777777777777777777777777777777777777777777777777754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.48  E-value=2.1e-05  Score=68.99  Aligned_cols=146  Identities=12%  Similarity=0.070  Sum_probs=92.6

Q ss_pred             cCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        303 NDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF-T-DIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       303 g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      =|++....-..+.+...|..  .-.+.+|..+...|++.||...|++++.-- - +...+..+++..+..+++..|...+
T Consensus        70 ldP~R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          70 LDPERHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             cChhHHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            34455555555555544422  222567777777777777777777776622 2 6666777777777777777777777


Q ss_pred             HHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607        381 RNALDCYPN--EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL  451 (677)
Q Consensus       381 ~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  451 (677)
                      ++..+.+|.  .++....+|..+...|++.+|...|+.++...| .+.+....+..+.++|+..++..-+...
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            777766653  355666677777777777777777777777666 4555566666666777666655544433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.45  E-value=5e-06  Score=70.96  Aligned_cols=86  Identities=12%  Similarity=0.006  Sum_probs=67.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---H
Q psy16607        321 FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---I  393 (677)
Q Consensus       321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  393 (677)
                      .....-++..|...+..|+|++|++.|+.+....|    ...+.+.++.+|+..+++++|+..+++-++++|.++.   +
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            33444457888888888999999988888888777    5678888888888889999998888888888887654   6


Q ss_pred             HHHHHHHHHHcCC
Q psy16607        394 MTEMARIFEGLNN  406 (677)
Q Consensus       394 ~~~la~~~~~~g~  406 (677)
                      ++..|.++.....
T Consensus        87 ~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   87 YYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777777776654

>KOG4234|consensus

Probab=98.44  E-value=2.3e-06  Score=75.70  Aligned_cols=104  Identities=15%  Similarity=0.082  Sum_probs=65.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607        543 LALCCFYSQQYDMVVTCFERALSLALNENA-----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL  617 (677)
Q Consensus       543 la~~~~~~g~~~~A~~~~~~al~~~~~p~~-----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~  617 (677)
                      -|.-++..|+|++|..-|..|+.  ..|..     ...+.+.|.+++                   +++.++.|+..+.+
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~i-------------------Kl~k~e~aI~dcsK  159 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALI-------------------KLRKWESAIEDCSK  159 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHH-------------------HhhhHHHHHHHHHh
Confidence            45555666666666666666666  33322     233455566655                   66777777777777


Q ss_pred             HHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       618 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      +++++|.+..++...+.+|.++.++++|++.|++.++.+|...++.-..+
T Consensus       160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            77777766666666677777777777777777777777776665544333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.44  E-value=0.0001  Score=69.12  Aligned_cols=174  Identities=11%  Similarity=-0.001  Sum_probs=137.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHH---HHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCME---AIA  429 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  429 (677)
                      .+..++.-|...++.|++++|+..|+.+...+|..   ..+...++.++++.+++++|+...++-+.+.|.++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46788899999999999999999999999998865   468899999999999999999999999999998643   455


Q ss_pred             HHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        430 CIGVNHFYND--------QPEVALLFYRRLLQMGLYNAE-----------------LFNNLALCCFYSQQYDMVVTCFER  484 (677)
Q Consensus       430 ~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~  484 (677)
                      ..|.+++..=        -..+|+..++..+...|++.-                 --..+|..|.+.|.+..|+.-++.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            6666655432        135678888999999998641                 124578999999999999999999


Q ss_pred             HHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        485 ALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       485 al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      +++..|+. ...+++..+..+|.        .+|-.++|...-.-.-...|++.
T Consensus       193 v~e~y~~t~~~~eaL~~l~eaY~--------~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         193 VLENYPDTSAVREALARLEEAYY--------ALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHhccccccchHHHHHHHHHHHH--------HhCChHHHHHHHHHHHhcCCCCc
Confidence            99987765 34567777777877        78888887766554444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.44  E-value=6.1e-07  Score=68.00  Aligned_cols=52  Identities=17%  Similarity=0.184  Sum_probs=19.2

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607        371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA  422 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  422 (677)
                      |++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3333333333333333333333333333333333333333333333333333

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.44  E-value=5.7e-06  Score=78.25  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARI  400 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~  400 (677)
                      +..|.-++..|+|.+|...|..-++..|    ...+++.||.+++.+|++++|...|..+.+..|++   ++.++.+|.+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            4555555556666666666666666555    34556666666666666666666666655554432   4556666666


Q ss_pred             HHHcCChhHHHHHHHHHHHhCcCCHHH
Q psy16607        401 FEGLNNMPMSVKYYKLILKRDATCMEA  427 (677)
Q Consensus       401 ~~~~g~~~~A~~~~~~al~~~p~~~~~  427 (677)
                      ...+|+.++|...|+++++..|....+
T Consensus       225 ~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            666666666666666666666654443

>KOG4234|consensus

Probab=98.43  E-value=2.7e-06  Score=75.28  Aligned_cols=105  Identities=22%  Similarity=0.263  Sum_probs=83.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFE  402 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  402 (677)
                      .-|.-++..|+|++|..-|..++..-|      ....|.+.|.+.++++.++.|+..+.++++++|....++...|.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            456777888888888888888888776      23456677888888888888888888888888888888888888888


Q ss_pred             HcCChhHHHHHHHHHHHhCcCCHHHHHHHHH
Q psy16607        403 GLNNMPMSVKYYKLILKRDATCMEAIACIGV  433 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  433 (677)
                      ++..|++|++.|+++++.+|..-.+.-..+.
T Consensus       180 k~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            8888888888888888888876554444433

>KOG2796|consensus

Probab=98.39  E-value=0.0001  Score=68.40  Aligned_cols=161  Identities=16%  Similarity=0.243  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607        341 REAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILK  419 (677)
Q Consensus       341 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  419 (677)
                      +..+..+++-+     ..+.+.+..++...|.|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+++-+
T Consensus       166 ESsv~lW~KRl-----~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek  240 (366)
T KOG2796|consen  166 ESSIRLWRKRL-----GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK  240 (366)
T ss_pred             hhHHHHHHHHH-----HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            44455555433     3456677777777888888888888888877 55677777888888888888888888885543


Q ss_pred             hCc------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-
Q psy16607        420 RDA------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-  492 (677)
Q Consensus       420 ~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  492 (677)
                      ...      ....+..+.+.++.-.+++..|...+.+++..++.++.+.++.+.|+...|+...|++.++.++...|.. 
T Consensus       241 ~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  241 VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            321      2345666778888888889999999999999999999999999999999999999999999999988876 


Q ss_pred             chHHHHHHHHHHHH
Q psy16607        493 NAADVWYNISHVAI  506 (677)
Q Consensus       493 ~~~~~~~~l~~~~~  506 (677)
                      ......+++..+|.
T Consensus       321 l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  321 LHESVLFNLTTMYE  334 (366)
T ss_pred             hhhhHHHHHHHHHH
Confidence            22334555555554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.37  E-value=2.2e-06  Score=65.99  Aligned_cols=63  Identities=16%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH
Q psy16607        365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA  427 (677)
Q Consensus       365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  427 (677)
                      .+|...+++++|+.++++++..+|+++..+..+|.++...|++++|+..|+++++..|++..+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            344555555555555555555555555555555555555555555555555555555544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.32  E-value=1.6e-05  Score=75.17  Aligned_cols=103  Identities=9%  Similarity=-0.004  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHH
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGV  433 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  433 (677)
                      .+..+.-++..|+|..|...|..-++..|+.   +.+++.||.+++.+|++++|...|..+++..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6777777777788888888888888877764   4677778888888888888888888877776654   677777777


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLYNAELF  462 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~  462 (677)
                      +...+|+.++|...|+++++..|....+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            77777777777777777777777766543

>KOG2300|consensus

Probab=98.30  E-value=0.0061  Score=61.88  Aligned_cols=155  Identities=12%  Similarity=0.080  Sum_probs=102.5

Q ss_pred             HcCCHHHHHHHHHHHHhhhccc---c-hHHH--------HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc---CCC
Q psy16607        471 YSQQYDMVVTCFERALSLALNE---N-AADV--------WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM---GLY  535 (677)
Q Consensus       471 ~~g~~~~A~~~~~~al~~~p~~---~-~~~~--------~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~---~p~  535 (677)
                      -.|-+++|.++-++++.....-   . ...+        +..+..+..        -.|++.+|++....+.+.   .|.
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~l--------v~~~~~~al~~i~dm~~w~~r~p~  358 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRL--------VRGDYVEALEEIVDMKNWCTRFPT  358 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHhCCc
Confidence            3466778888777776542211   0 1122        222333333        679999999888777643   343


Q ss_pred             -------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607        536 -------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD--VWYNISHVAIITECSPFSFSTHTSYLFIQGIS  606 (677)
Q Consensus       536 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~--~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g  606 (677)
                             .+...+.+|......+.++.|...|..+.+.. ...+..  +-.+++..|.                   +.|
T Consensus       359 ~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL-------------------~~~  418 (629)
T KOG2300|consen  359 PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYL-------------------RIG  418 (629)
T ss_pred             hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHH-------------------Hhc
Confidence                   34567788888889999999999999999842 223333  3457788887                   766


Q ss_pred             CHHHHHHHHHHHHccCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        607 DTRLAIQCLHLALSIDSSH----------GLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       607 ~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      +-+.-.+.++.   +.|.+          ..+++..|...+.++++.||...+.+.++..
T Consensus       419 ~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  419 DAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            65544444333   34432          2456777888888999999999999998876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.30  E-value=2.8e-06  Score=86.20  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=65.9

Q ss_pred             hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH---HHHHHHHHHHcCCHHH
Q psy16607        568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS---QNNLAVLEAREGHIER  644 (677)
Q Consensus       568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~  644 (677)
                      .+|+++..|+++|.+|.                   ..|+|++|+..|+++++++|++.++   |+++|.+|..+|++++
T Consensus        70 ~dP~~a~a~~NLG~AL~-------------------~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE  130 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-------------------SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK  130 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence            46889999999999999                   9999999999999999999999865   9999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy16607        645 ASTYLQAAAAS  655 (677)
Q Consensus       645 A~~~~~~al~~  655 (677)
                      |+.++++++++
T Consensus       131 Ala~LrrALel  141 (453)
T PLN03098        131 AADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHh
Confidence            99999999997

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.24  E-value=3.6e-05  Score=65.78  Aligned_cols=84  Identities=12%  Similarity=0.078  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIA  429 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  429 (677)
                      ....++..|...++.|+|.+|++.|+.+....|..   ..+...++.+|.+.+++++|+..+++.++++|.++   -+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45566666777777777777777777777666643   34566677777777777777777777777776653   3455


Q ss_pred             HHHHHHHhCC
Q psy16607        430 CIGVNHFYND  439 (677)
Q Consensus       430 ~la~~~~~~g  439 (677)
                      ..|.+++...
T Consensus        89 ~~gL~~~~~~   98 (142)
T PF13512_consen   89 MRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>KOG1914|consensus

Probab=98.23  E-value=0.0095  Score=61.43  Aligned_cols=348  Identities=11%  Similarity=0.051  Sum_probs=200.1

Q ss_pred             hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHHcCChHHHHH
Q psy16607        300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIR-MIRVYIRLDQPIRAID  378 (677)
Q Consensus       300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-la~~~~~~g~~~~A~~  378 (677)
                      .+...+++..+.|++.....|.....| .......+...+|+...++|.+++..--+.+.|.. +..+-...++...+..
T Consensus        30 ~qt~~~~~~R~~YEq~~~~FP~s~r~W-~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~  108 (656)
T KOG1914|consen   30 AQTQPIDKVRETYEQLVNVFPSSPRAW-KLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYRE  108 (656)
T ss_pred             HccCCHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHH
Confidence            344589999999999999998777777 57788888899999999999999876555666543 3333334455444433


Q ss_pred             ----HHHHHHHc---CCCcHHHHHHHHHHHHH---cC------ChhHHHHHHHHHHHhCcCCHH-HHHHH----------
Q psy16607        379 ----IGRNALDC---YPNEVTIMTEMARIFEG---LN------NMPMSVKYYKLILKRDATCME-AIACI----------  431 (677)
Q Consensus       379 ----~~~~al~~---~p~~~~~~~~la~~~~~---~g------~~~~A~~~~~~al~~~p~~~~-~~~~l----------  431 (677)
                          .|+-++..   ++.....|...+..+..   .|      +.+.-.+.|++++..--.+.+ .|...          
T Consensus       109 ~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~  188 (656)
T KOG1914|consen  109 KMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINII  188 (656)
T ss_pred             HHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence                34444433   34445566666555432   23      445556777777654322211 11000          


Q ss_pred             -H--HHHHhCCChHHHHH------------------------------------------------------------HH
Q psy16607        432 -G--VNHFYNDQPEVALL------------------------------------------------------------FY  448 (677)
Q Consensus       432 -a--~~~~~~g~~~~A~~------------------------------------------------------------~~  448 (677)
                       |  .+-.....|..|..                                                            .|
T Consensus       189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay  268 (656)
T KOG1914|consen  189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY  268 (656)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence             0  00011111222222                                                            23


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607        449 RRLLQMGLYNAELFNNLALCCFYSQQ--------------YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV  514 (677)
Q Consensus       449 ~~al~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~  514 (677)
                      ++++..-+..+++|+..+..+...++              -+++..+|++++...... ....++.++..-.     ...
T Consensus       269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE-----~~~  342 (656)
T KOG1914|consen  269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEE-----SRY  342 (656)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHH-----Hhc
Confidence            33444444455666655555555544              566777777776543221 1222233322221     000


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      ...+.+..-..+++++.....++ -+|..+-..-.+..-...|...|.++-+....+.+..+...+-.            
T Consensus       343 ~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE------------  410 (656)
T KOG1914|consen  343 DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME------------  410 (656)
T ss_pred             ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH------------
Confidence            22235556666777665443332 34455555555566677788888888763323323333333333            


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHH
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--SPYLY-ETHYNQAVIS  670 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~-~~~~~la~~~  670 (677)
                              +...++..-|...|+-.+...++.+..-......+...|+-..|..+|++++..  .|+.. +.|..+-.--
T Consensus       411 --------y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE  482 (656)
T KOG1914|consen  411 --------YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE  482 (656)
T ss_pred             --------HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence                    337889999999999999999988888888888888889989999999998876  43332 4444443333


Q ss_pred             HhcC
Q psy16607        671 NLVS  674 (677)
Q Consensus       671 ~~~G  674 (677)
                      ...|
T Consensus       483 S~vG  486 (656)
T KOG1914|consen  483 SNVG  486 (656)
T ss_pred             Hhcc
Confidence            3344

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.22  E-value=2.2e-05  Score=69.24  Aligned_cols=100  Identities=17%  Similarity=0.021  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607        519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY---DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST  595 (677)
Q Consensus       519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~  595 (677)
                      ++.|.+.++.....+|.+++.+++-|.++..+.++   .++..                                     
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~-------------------------------------   49 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK-------------------------------------   49 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH-------------------------------------
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH-------------------------------------
Confidence            56677777777778888888877777777665433   11222                                     


Q ss_pred             chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHH
Q psy16607        596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-----------IERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                                 -+++|+.-|++++.++|+..++++.+|.+|..++.           +++|..+|++|.+.+|++...+.
T Consensus        50 -----------miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k  118 (186)
T PF06552_consen   50 -----------MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK  118 (186)
T ss_dssp             -----------HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             -----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence                       22344444555555555555555555555554432           56666666666666666655444


Q ss_pred             HH
Q psy16607        665 NQ  666 (677)
Q Consensus       665 ~l  666 (677)
                      .|
T Consensus       119 sL  120 (186)
T PF06552_consen  119 SL  120 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1586|consensus

Probab=98.22  E-value=0.00018  Score=65.80  Aligned_cols=128  Identities=11%  Similarity=0.067  Sum_probs=86.7

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhc-cCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYS-QQYDMVVTCFERALSLALNENA----ADVWYNISHVA  583 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~p~~----~~~~~~l~~~~  583 (677)
                      +..++++|+.++++++++..+-.      ..+..+|.+|... .++++|+.+|+++-+.......    -..+...+..-
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            45566777777776665543322      2344677777765 8899999999998874322111    12333344444


Q ss_pred             HHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       584 ~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      .                   .+++|.+|+..|++.....-++.       ..++.-|.|++-..+.-.+...+++..+++
T Consensus       165 a-------------------~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  165 A-------------------QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD  225 (288)
T ss_pred             H-------------------HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence            4                   78899999999999887655543       335566778888889889999999999999


Q ss_pred             CCChH
Q psy16607        657 PYLYE  661 (677)
Q Consensus       657 p~~~~  661 (677)
                      |...+
T Consensus       226 P~F~d  230 (288)
T KOG1586|consen  226 PAFTD  230 (288)
T ss_pred             Ccccc
Confidence            98754

>KOG4555|consensus

Probab=98.18  E-value=4.2e-05  Score=62.97  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      +-..|..+...|+.+.|++.|.+++.  ..|..+.+|++.+..+.                   -.|+.++|++.+++++
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~R-------------------Lq~~~e~ALdDLn~Al  104 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALR-------------------LQGDDEEALDDLNKAL  104 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHH-------------------HcCChHHHHHHHHHHH
Confidence            33457777888888888888888888  77888888888888887                   8888888888888888


Q ss_pred             ccCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        620 SIDSSHG----LSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       620 ~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      ++..+..    .++...|.+|...|+-+.|...|+.+.++....
T Consensus       105 eLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  105 ELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            8754432    467788888888888888888888888776544

>KOG2610|consensus

Probab=98.13  E-value=0.0019  Score=62.33  Aligned_cols=160  Identities=13%  Similarity=-0.042  Sum_probs=108.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHhC
Q psy16607        363 MIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR-DATC---MEAIACIGVNHFYN  438 (677)
Q Consensus       363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~  438 (677)
                      -+.+....|++.+|....++.++..|.+.-++..--.++..+|+...-...+++++.. +++-   .-+.-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3445555677777777788888888887777777777777788887777777777765 4443   23334556677777


Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccC
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYN  516 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~  516 (677)
                      |-|++|.+..++++++++.+.-+...++.++...|++.++.++..+.-..-...  .....|...+.+++        ..
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i--------E~  260 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI--------EG  260 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh--------cc
Confidence            888888888888888888887777778888888888888887776543221111  11222334445554        66


Q ss_pred             CCHHHHHHHHHHHH
Q psy16607        517 DQPEVALLFYRRLL  530 (677)
Q Consensus       517 ~~~~~A~~~~~~al  530 (677)
                      +.|+.|++.|++-+
T Consensus       261 aeye~aleIyD~ei  274 (491)
T KOG2610|consen  261 AEYEKALEIYDREI  274 (491)
T ss_pred             cchhHHHHHHHHHH
Confidence            77777777777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.13  E-value=1e-05  Score=82.18  Aligned_cols=69  Identities=29%  Similarity=0.333  Sum_probs=64.9

Q ss_pred             cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHH---HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV---WYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~---~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                      .+|+++..|+++|.+|...|+|++|+..|+++++  ++|++..+   |+++|.+|.                   .+|++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya-------------------~LGr~  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHA-------------------YREEG  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHH-------------------HcCCH
Confidence            5788999999999999999999999999999999  89998854   999999999                   99999


Q ss_pred             HHHHHHHHHHHcc
Q psy16607        609 RLAIQCLHLALSI  621 (677)
Q Consensus       609 ~~A~~~~~~al~~  621 (677)
                      ++|+.++++++++
T Consensus       129 dEAla~LrrALel  141 (453)
T PLN03098        129 KKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999997

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.12  E-value=6.9e-06  Score=64.12  Aligned_cols=69  Identities=25%  Similarity=0.317  Sum_probs=57.5

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh--c---cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL--N---ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~---p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                      |+-..++.++|.+|...|++++|+.+|++++.+..  .   |....++.++|.++.                   ..|++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-------------------~~g~~   62 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-------------------RLGDY   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------------------HTTHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-------------------HcCCH
Confidence            34467889999999999999999999999998631  1   233567899999999                   99999


Q ss_pred             HHHHHHHHHHHcc
Q psy16607        609 RLAIQCLHLALSI  621 (677)
Q Consensus       609 ~~A~~~~~~al~~  621 (677)
                      ++|++++++++++
T Consensus        63 ~~A~~~~~~al~i   75 (78)
T PF13424_consen   63 EEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.11  E-value=5.4e-06  Score=64.76  Aligned_cols=68  Identities=25%  Similarity=0.257  Sum_probs=57.5

Q ss_pred             cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC----CC---ChHHHHHHHHHHHHcCCH
Q psy16607        570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID----SS---HGLSQNNLAVLEAREGHI  642 (677)
Q Consensus       570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~  642 (677)
                      |+...++.++|.+|.                   ..|++++|+.+|++++++.    ++   ...++.++|.++...|++
T Consensus         2 ~~~a~~~~~la~~~~-------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~   62 (78)
T PF13424_consen    2 PDTANAYNNLARVYR-------------------ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY   62 (78)
T ss_dssp             HHHHHHHHHHHHHHH-------------------HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            455678899999998                   9999999999999999752    22   246789999999999999


Q ss_pred             HHHHHHHHHHHHhC
Q psy16607        643 ERASTYLQAAAASS  656 (677)
Q Consensus       643 ~~A~~~~~~al~~~  656 (677)
                      ++|+.++++++++.
T Consensus        63 ~~A~~~~~~al~i~   76 (78)
T PF13424_consen   63 EEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999999863

...

>KOG4555|consensus

Probab=98.11  E-value=0.00011  Score=60.50  Aligned_cols=97  Identities=11%  Similarity=0.006  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHHHHHH
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNH  435 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  435 (677)
                      +...|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|++.+.+++++....    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34455666666777777777777777777777777777777777777777777777777765432    34556667777


Q ss_pred             HhCCChHHHHHHHHHHHHcCC
Q psy16607        436 FYNDQPEVALLFYRRLLQMGL  456 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~  456 (677)
                      ...|+.+.|..-|+.+-++..
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCC
Confidence            777777777777766665543

>KOG1586|consensus

Probab=98.07  E-value=0.00073  Score=61.87  Aligned_cols=177  Identities=14%  Similarity=0.143  Sum_probs=117.0

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDW-----WWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A  376 (677)
                      .+++++|.++|.++-....-...     ..+...+.++.+.|.-.+|             ...+...+.+|.+ +++.+|
T Consensus        27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa-------------at~YveA~~cykk-~~~~eA   92 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA-------------ATTYVEAANCYKK-VDPEEA   92 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH-------------HHHHHHHHHHhhc-cChHHH
Confidence            46888898888887644311000     1111222222222222222             3344444555544 588888


Q ss_pred             HHHHHHHHHcCCCcHH------HHHHHHHHHHHc-CChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHH
Q psy16607        377 IDIGRNALDCYPNEVT------IMTEMARIFEGL-NNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEV  443 (677)
Q Consensus       377 ~~~~~~al~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  443 (677)
                      +.++++++++..+-..      .+..+|.+|..- .++++|+.+|+++-+.....      ...+...+..-...++|.+
T Consensus        93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~  172 (288)
T KOG1586|consen   93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK  172 (288)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887654322      345788888765 88999999999987764432      3345566777778899999


Q ss_pred             HHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        444 ALLFYRRLLQMGLYNAE-------LFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       444 A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      |+..|+++....-++..       .++.-|.|++...+.-.+...+++..+++|.-
T Consensus       173 Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            99999998886655543       34556777777788888888899999998875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.06  E-value=1.1e-05  Score=54.74  Aligned_cols=43  Identities=26%  Similarity=0.080  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607        626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  668 (677)
Q Consensus       626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  668 (677)
                      ++++..+|.+|...|++++|++.|+++++.+|++++++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4688999999999999999999999999999999999999885

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.06  E-value=3.2e-05  Score=68.21  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN----------MPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      ++.|.+.++.....+|.+.+.+++.|.++..+.+          +++|+.-|++++.++|+..++++++|.+|...+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            4567777777777788888877777777665533          455666677777777777777777777776554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.03  E-value=0.0013  Score=67.26  Aligned_cols=186  Identities=12%  Similarity=0.029  Sum_probs=94.8

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607        369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY  448 (677)
Q Consensus       369 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  448 (677)
                      +..+.+.-++..+++++++|+..++|..++.-  ......+|.++|+++++.......    ........|..-      
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~------  247 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFW------  247 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchh------
Confidence            34556666677777777777777777666542  223456677777776654332110    000000111100      


Q ss_pred             HHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607        449 RRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY  526 (677)
Q Consensus       449 ~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~  526 (677)
                       ........  ...+...+|.+..++|+.++|++.++..++..|......++.++..++.        ..+.+.++...+
T Consensus       248 -e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL--------elq~Yad~q~lL  318 (539)
T PF04184_consen  248 -EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL--------ELQAYADVQALL  318 (539)
T ss_pred             -hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH--------hcCCHHHHHHHH
Confidence             01110111  1233445666666666666666666666665554333556666666665        666666666666


Q ss_pred             HHHHHc-CCCcHHHHHHHHHHHHh-------------cc---CHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607        527 RRLLQM-GLYNAELFNNLALCCFY-------------SQ---QYDMVVTCFERALSLALNENAADVWY  577 (677)
Q Consensus       527 ~~al~~-~p~~~~~~~~la~~~~~-------------~g---~~~~A~~~~~~al~~~~~p~~~~~~~  577 (677)
                      .+.-+. -|+.+...+..+.+..+             .|   --..|++.+.+|++  .+|.-+..+.
T Consensus       319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~YLL  384 (539)
T PF04184_consen  319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPKYLL  384 (539)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCchhhh
Confidence            654322 23444444443333222             11   01236677788887  7776665443

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.03  E-value=0.0012  Score=67.64  Aligned_cols=239  Identities=12%  Similarity=-0.007  Sum_probs=146.5

Q ss_pred             HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607        403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF  482 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  482 (677)
                      +..+.+.-++.-++|++++|+.+.++..|+.-  ......+|.++|+++++.....    +.........|..-+     
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e-----  248 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWE-----  248 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhh-----
Confidence            45566777888899999999999998887752  2334688999999988754221    111111111111111     


Q ss_pred             HHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607        483 ERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCF  560 (677)
Q Consensus       483 ~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~  560 (677)
                        .+...+.+....+...++.+..        +.|+.++|++.++..++..|.  +..+..+|..++...+.|.++...+
T Consensus       249 --~~~~Rdt~~~~y~KrRLAmCar--------klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  249 --AWHRRDTNVLVYAKRRLAMCAR--------KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             --hhhccccchhhhhHHHHHHHHH--------HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence              1111111223566778999998        999999999999999988775  4568999999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC---HHHHHHHHHHHHccCCCChHHHHHHH----
Q psy16607        561 ERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD---TRLAIQCLHLALSIDSSHGLSQNNLA----  633 (677)
Q Consensus       561 ~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la----  633 (677)
                      .+.-+. .-|..+...+..+.+.. .....++.+.     ...+.|-   -..|++.+.+|++.+|..+..+..+=    
T Consensus       319 ~kYdDi-~lpkSAti~YTaALLka-Rav~d~fs~e-----~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil  391 (539)
T PF04184_consen  319 AKYDDI-SLPKSATICYTAALLKA-RAVGDKFSPE-----AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL  391 (539)
T ss_pred             HHhccc-cCCchHHHHHHHHHHHH-HhhccccCch-----hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC
Confidence            986541 12455554444443322 0000000000     0012221   23578899999999998776544321    


Q ss_pred             --HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        634 --VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       634 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                        .-..+.|+ .||+.+---.+..=.+-+.++..|...+
T Consensus       392 PPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw  429 (539)
T PF04184_consen  392 PPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW  429 (539)
T ss_pred             ChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence              12344565 7777776666655444455554444333

The molecular function of this protein is uncertain.

>KOG1585|consensus

Probab=98.02  E-value=0.0014  Score=60.42  Aligned_cols=203  Identities=13%  Similarity=0.143  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT------IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC  430 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  430 (677)
                      ...+...+.+|...+++++|..++.++.+-..++..      .+-..+.+......+.++..+|+++..           
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~-----------   99 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE-----------   99 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence            456677777888888888888888888765443322      233444555556666666666666643           


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHH
Q psy16607        431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAI  506 (677)
Q Consensus       431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~  506 (677)
                         .|...|.++.|-..++++-+.               .+.-++++|+++|++++.+-..+    ...+.+-..+.++.
T Consensus       100 ---lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen  100 ---LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             ---HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence               344444444444444443322               23345555666666555443322    11223334444444


Q ss_pred             HhhhcccccCCCHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh--hccchHHHHHH
Q psy16607        507 LNALSTSVYNDQPEVALLFYRRLL------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYN  578 (677)
Q Consensus       507 l~~l~~~~~~~~~~~A~~~~~~al------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~p~~~~~~~~  578 (677)
                              +..++.+|-..+.+-.      ...+.....+.....++....+|..|..+++...++.  ..+++..+..+
T Consensus       162 --------rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len  233 (308)
T KOG1585|consen  162 --------RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN  233 (308)
T ss_pred             --------hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence                    5566666655554433      1223333445555566666778999999988866532  33566677777


Q ss_pred             HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      |-..|                    ..|+.++....+.
T Consensus       234 LL~ay--------------------d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  234 LLTAY--------------------DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHh--------------------ccCCHHHHHHHHc
Confidence            77766                    7888887766554

>KOG2300|consensus

Probab=98.00  E-value=0.025  Score=57.64  Aligned_cols=321  Identities=8%  Similarity=0.017  Sum_probs=164.2

Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHccCC----CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcC---CCc----HHHH
Q psy16607        329 QLGKCYFSLG--LIREAQQQFNSALNQFT----DIEAFIRMIRVYI-RLDQPIRAIDIGRNALDCY---PNE----VTIM  394 (677)
Q Consensus       329 ~la~~~~~~g--~~~~A~~~~~~al~~~p----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~  394 (677)
                      .+|..+...|  +...++++++..+...+    .......+|.+++ ..++++.|...++++..+.   |..    .++.
T Consensus        12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~   91 (629)
T KOG2300|consen   12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA   91 (629)
T ss_pred             HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence            3444455555  55566666666655444    3344555555443 3456666666666665432   221    2345


Q ss_pred             HHHHHHHHHcC-ChhHHHHHHHHHHHhCcCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH----HHHHH-
Q psy16607        395 TEMARIFEGLN-NMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA----ELFNN-  464 (677)
Q Consensus       395 ~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~-  464 (677)
                      ..++.+|.... .+..+...+++++++....+    ...+.++.++.-..++..|++.+.-.......-.    ...+. 
T Consensus        92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftl  171 (629)
T KOG2300|consen   92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTL  171 (629)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHH
Confidence            56666666655 56666677777776655443    3344566666666677766666332211111101    11111 


Q ss_pred             -HHHHHHHcCCHHH---HHHHHHHHHhhhccc----chHH-HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH---HH-
Q psy16607        465 -LALCCFYSQQYDM---VVTCFERALSLALNE----NAAD-VWYNISHVAILNALSTSVYNDQPEVALLFYRRL---LQ-  531 (677)
Q Consensus       465 -la~~~~~~g~~~~---A~~~~~~al~~~p~~----~~~~-~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~a---l~-  531 (677)
                       .+.++....+..+   +.....+.++....+    +... .+..+..+|       |+..|+...+...+++.   +. 
T Consensus       172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~y-------y~~~gq~rt~k~~lkQLQ~siqt  244 (629)
T KOG2300|consen  172 SMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSY-------YLLPGQVRTVKPALKQLQDSIQT  244 (629)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHHHHHHhc
Confidence             2233333333333   333333333322222    1111 122222222       24567766555555433   31 


Q ss_pred             cCCC------------cHH--HH---------HHHH--HHHHhccCHHHHHHHHHHHHHHhhc----cchHHH-------
Q psy16607        532 MGLY------------NAE--LF---------NNLA--LCCFYSQQYDMVVTCFERALSLALN----ENAADV-------  575 (677)
Q Consensus       532 ~~p~------------~~~--~~---------~~la--~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~-------  575 (677)
                      ..+.            .+.  .|         ..+.  .--...|-+++|.++-++++.....    +....+       
T Consensus       245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~  324 (629)
T KOG2300|consen  245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI  324 (629)
T ss_pred             cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence            1111            011  11         1111  1112456788888888888764211    112222       


Q ss_pred             -HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC---CC-------ChHHHHHHHHHHHHcCCHHH
Q psy16607        576 -WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID---SS-------HGLSQNNLAVLEAREGHIER  644 (677)
Q Consensus       576 -~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~  644 (677)
                       +..+..|-.                   -.|++.+|++....+.+..   |.       .+...+.+|......|.++.
T Consensus       325 ~LE~iv~c~l-------------------v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~en  385 (629)
T KOG2300|consen  325 LLEHIVMCRL-------------------VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYEN  385 (629)
T ss_pred             HHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHH
Confidence             233444444                   7899999988888777653   32       23456677777778888999


Q ss_pred             HHHHHHHHHHhCCCC-h--HHHHHHHHHHHhcCC
Q psy16607        645 ASTYLQAAAASSPYL-Y--ETHYNQAVISNLVSV  675 (677)
Q Consensus       645 A~~~~~~al~~~p~~-~--~~~~~la~~~~~~G~  675 (677)
                      |...|..|.++-... -  -...|+|.+|...|+
T Consensus       386 Ae~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~  419 (629)
T KOG2300|consen  386 AEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD  419 (629)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence            999999988865432 2  344567888877664

>KOG3616|consensus

Probab=98.00  E-value=0.002  Score=68.18  Aligned_cols=167  Identities=13%  Similarity=0.021  Sum_probs=101.0

Q ss_pred             HHhcccCHHHHHHHHHHH------Hhh----CcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy16607        298 LYHHENDVASAMDLAVES------TKA----CEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVY  367 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a------~~~----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~  367 (677)
                      +|-+..++++|+++|++.      +++    .|......-...|.-+...|+++.|+..|-++-       .+.......
T Consensus       670 lfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------~~~kaieaa  742 (1636)
T KOG3616|consen  670 LFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------CLIKAIEAA  742 (1636)
T ss_pred             HHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-------hHHHHHHHH
Confidence            344456777777777642      222    121111222234666777888888888887652       233344455


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      ....++.+|+..++..-.... ....|-.++.-|...|+|+.|.++|.++-        .......+|-+.|+++.|.++
T Consensus       743 i~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHH
Confidence            566788888888876544332 23455677888899999999999887752        122334667788888888877


Q ss_pred             HHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607        448 YRRLLQMGLYN-AELFNNLALCCFYSQQYDMVVTCF  482 (677)
Q Consensus       448 ~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~  482 (677)
                      .++...  |.. ...+...+.-+-+.|+|.+|.+.|
T Consensus       814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            766532  322 234445555555556655554443

>KOG1258|consensus

Probab=98.00  E-value=0.032  Score=58.80  Aligned_cols=345  Identities=10%  Similarity=-0.042  Sum_probs=223.1

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPI  374 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~  374 (677)
                      -.+.|..+.+..+|++.+...|.+...|...++.+--..|+.+.-...|+++.....    ....|-........++++.
T Consensus        89 E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k  168 (577)
T KOG1258|consen   89 EYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK  168 (577)
T ss_pred             HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence            455688999999999999888877777777777777778888888889999888554    4455666666667778888


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHc------CChhHHHHHHHHHHH-------------------h--Cc--CCH
Q psy16607        375 RAIDIGRNALDCYPNEVTIMTEMARIFEGL------NNMPMSVKYYKLILK-------------------R--DA--TCM  425 (677)
Q Consensus       375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~-------------------~--~p--~~~  425 (677)
                      .-..+|++.++.--.....++..=.-+.+.      -..+++.+.-.....                   -  .|  ...
T Consensus       169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~  248 (577)
T KOG1258|consen  169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT  248 (577)
T ss_pred             HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence            888888888765332222222111111111      112222221111110                   0  00  001


Q ss_pred             HHHHHHH-------HHHHhCCChHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607        426 EAIACIG-------VNHFYNDQPEVALLFYRRLLQM-----GLY---NAELFNNLALCCFYSQQYDMVVTCFERALSLAL  490 (677)
Q Consensus       426 ~~~~~la-------~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  490 (677)
                      .....+.       .++.......+.+..++..++.     .|.   ....|..........|+++...-.|++++--..
T Consensus       249 ~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA  328 (577)
T KOG1258|consen  249 EEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA  328 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh
Confidence            1111111       1222222333444444444432     122   235677778888899999999999999988777


Q ss_pred             ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc
Q psy16607        491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  569 (677)
Q Consensus       491 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  569 (677)
                      ..  ...|...+....        ..|+.+-|-..+..+.+. .+..+.+...-+......|++..|...+++...  ..
T Consensus       329 ~Y--~efWiky~~~m~--------~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--e~  396 (577)
T KOG1258|consen  329 LY--DEFWIKYARWME--------SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES--EY  396 (577)
T ss_pred             hh--HHHHHHHHHHHH--------HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh--hC
Confidence            66  889999998887        779999998888887765 466777788888888889999999999999998  45


Q ss_pred             cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH---HHHHHHHccCCCC---hHHHHHHHHH-HHHcCCH
Q psy16607        570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI---QCLHLALSIDSSH---GLSQNNLAVL-EAREGHI  642 (677)
Q Consensus       570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~---~~~~~al~~~p~~---~~~~~~la~~-~~~~g~~  642 (677)
                      |+...+-........                   +.|+.+.+.   ..+.....-..+.   ...+...+.. +.-.++.
T Consensus       397 pg~v~~~l~~~~~e~-------------------r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~  457 (577)
T KOG1258|consen  397 PGLVEVVLRKINWER-------------------RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA  457 (577)
T ss_pred             CchhhhHHHHHhHHH-------------------HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence            877766555544444                   888888887   3333333221111   2233444443 3346889


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        643 ERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       643 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      +.|...+.++++..|++...+..+..+....+
T Consensus       458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  458 DLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            99999999999999999888777766655443

>KOG0985|consensus

Probab=97.99  E-value=0.027  Score=62.30  Aligned_cols=152  Identities=9%  Similarity=0.018  Sum_probs=85.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG  403 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  403 (677)
                      ..-..+++..+-..+-++++++.+-.+.    +......+.....+ -+.....++.++.-..+..      .+|.+...
T Consensus       988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~------~ia~iai~ 1060 (1666)
T KOG0985|consen  988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP------DIAEIAIE 1060 (1666)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch------hHHHHHhh
Confidence            3456677888888889999998875443    22222222222222 2333344444443222211      12233333


Q ss_pred             cCChhHHHHHHHHH--------------------HHh--CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH
Q psy16607        404 LNNMPMSVKYYKLI--------------------LKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  461 (677)
Q Consensus       404 ~g~~~~A~~~~~~a--------------------l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  461 (677)
                      .+-|++|...|++-                    .+.  .-+.+..|..+|.+..+.|...+|++.|-++     +++..
T Consensus      1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~ 1135 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSN 1135 (1666)
T ss_pred             hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHH
Confidence            33344444443321                    000  0134677888888888888888888777654     56777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      +.....+..+.|.|++-+.++.-+-+...+
T Consensus      1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence            777777788888888888877776655443

>KOG4507|consensus

Probab=97.95  E-value=0.00051  Score=70.80  Aligned_cols=105  Identities=20%  Similarity=0.110  Sum_probs=90.2

Q ss_pred             HHHhccCHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        546 CCFYSQQYDMVVTCFERALSLALNENAA-DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       546 ~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                      .+...|+...|+.++..|+.  ..|... ....+++.++.                   +.|-..+|-..+.+++.++..
T Consensus       616 ywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~-------------------~~~~~~da~~~l~q~l~~~~s  674 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLI-------------------HYGLHLDATKLLLQALAINSS  674 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHH-------------------HhhhhccHHHHHHHHHhhccc
Confidence            34457899999999999998  667554 44778898888                   889999999999999999988


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       625 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      .+-.++.+|..+..+.+.+.|++.|++|++++|+++.....|-.+..
T Consensus       675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            88999999999999999999999999999999999987666655543

>KOG1550|consensus

Probab=97.92  E-value=0.011  Score=64.96  Aligned_cols=173  Identities=17%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcc----C--CCHHHHHHHHHHHHHcC-
Q psy16607        304 DVASAMDLAVESTKACEFRDWWWKVQLGKCYFSL-----GLIREAQQQFNSALNQ----F--TDIEAFIRMIRVYIRLD-  371 (677)
Q Consensus       304 ~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~----~--p~~~~~~~la~~~~~~g-  371 (677)
                      +...|..+++.+.+..   .......+|.++..-     .+.+.|+.+|+.+...    .  ..+.+.+.+|.+|.+.. 
T Consensus       227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence            3567888888887766   444446778877754     5788999999988762    1  14456677777777643 


Q ss_pred             ----ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC----CC
Q psy16607        372 ----QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN---NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----DQ  440 (677)
Q Consensus       372 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~  440 (677)
                          +...|..+|.++.+..  ++++.+.+|.++..-.   ++..|.++|..+...  .+..+.+.++.+|..-    .+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence                5566777777776554  4566666777766554   456777777776543  3566777777766543    35


Q ss_pred             hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q psy16607        441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYS-QQYDMVVTCFERA  485 (677)
Q Consensus       441 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  485 (677)
                      ...|..++.++...+  ++.+...++.++... ++++.+...+...
T Consensus       380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~  423 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL  423 (552)
T ss_pred             HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence            667777777777665  444444444444332 5555555444433

>KOG2610|consensus

Probab=97.89  E-value=0.0021  Score=62.08  Aligned_cols=168  Identities=15%  Similarity=0.088  Sum_probs=136.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHH
Q psy16607        396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN---AELFNNLALCCFY  471 (677)
Q Consensus       396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~  471 (677)
                      .-+.+..-.|++.+|....++.++-.|.+.-++..--.+++.+|+...-...+++++.. +++-   ..+.-.++-.+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34455667899999999999999999999999988889999999999999999999876 5554   4566677888899


Q ss_pred             cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Q psy16607        472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCC  547 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  547 (677)
                      .|-|++|.+.-++++++++.+  .-+...++.++.        ..+++.++.+...+.-..-...    ...|...+.++
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVle--------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~  257 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFD--CWASHAKAHVLE--------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH  257 (491)
T ss_pred             hccchhHHHHHHhhccCCCcc--hHHHHHHHHHHH--------hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence            999999999999999999998  778888888888        8899999999987754322211    12355678889


Q ss_pred             HhccCHHHHHHHHHHHHHHhhccchH
Q psy16607        548 FYSQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       548 ~~~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                      ...+.|+.|++.|++-+-.....++.
T Consensus       258 iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  258 IEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             hcccchhHHHHHHHHHHHHHhhccch
Confidence            99999999999999876533444444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.89  E-value=0.00024  Score=70.59  Aligned_cols=133  Identities=11%  Similarity=-0.041  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG-LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  438 (677)
                      |..+.....+.+..+.|..+|.++++..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            44444444444455555555555554444445555555555444 33333355555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        439 DQPEVALLFYRRLLQMGLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++.+.|..+|++++..-+...   .+|......-...|+.+....+.+++.+..|+.
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            555555555555555433322   455555566666666666666666666655553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0985|consensus

Probab=97.88  E-value=0.0049  Score=67.77  Aligned_cols=56  Identities=13%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI  417 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  417 (677)
                      +..|..+|.+..+.|...+|++.|-++     +++..+.....+..+.|.|++-+.++..+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            344444444444444444444444332     23334444444444444444444444443

>KOG1550|consensus

Probab=97.87  E-value=0.0073  Score=66.17  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC
Q psy16607        606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHIERASTYLQAAAASSPY  658 (677)
Q Consensus       606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~  658 (677)
                      .+++.|...|.++....   +...+++|.++..-   ..+..|..+|.++.+.+..
T Consensus       489 ~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  489 RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR  541 (552)
T ss_pred             CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence            35677777777776654   66677777766542   1256777777777665544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.87  E-value=0.00043  Score=68.74  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607        497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADV  575 (677)
Q Consensus       497 ~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~p~~~~~  575 (677)
                      +|..+.....        +.+..+.|..+|.++++..+....+|...|.+.+. .++.+.|..+|+.+++  .-|.+...
T Consensus         3 v~i~~m~~~~--------r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~   72 (280)
T PF05843_consen    3 VWIQYMRFMR--------RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDF   72 (280)
T ss_dssp             HHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHH
T ss_pred             HHHHHHHHHH--------HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence            4555555555        56679999999999997777788999999999777 5666669999999999  78999999


Q ss_pred             HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        576 WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAA  652 (677)
Q Consensus       576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a  652 (677)
                      |......+.                   ..++.+.|...|++++..-+...   .+|......-.+.|+.+....+.+++
T Consensus        73 ~~~Y~~~l~-------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   73 WLEYLDFLI-------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HHHHHHHHH-------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHHHHHHH-------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            998888888                   99999999999999999876654   57888888999999999999999999


Q ss_pred             HHhCCCChHH
Q psy16607        653 AASSPYLYET  662 (677)
Q Consensus       653 l~~~p~~~~~  662 (677)
                      .+..|++...
T Consensus       134 ~~~~~~~~~~  143 (280)
T PF05843_consen  134 EELFPEDNSL  143 (280)
T ss_dssp             HHHTTTS-HH
T ss_pred             HHHhhhhhHH
Confidence            9999986543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.82  E-value=0.05  Score=55.18  Aligned_cols=128  Identities=10%  Similarity=-0.008  Sum_probs=84.9

Q ss_pred             HHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHH
Q psy16607        293 YLFEYLYHHENDVASAMDLAVESTKACEFRDWWWK----VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVY  367 (677)
Q Consensus       293 ~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~  367 (677)
                      ..-|+++..++++.+|..+|.++.+..........    ..+....+-+.+.+.-....-..-+..| ......-.+...
T Consensus        10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~   89 (549)
T PF07079_consen   10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA   89 (549)
T ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            34577788889999999999999876532222211    1111222334555555555555555555 566777788889


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCc----HH--H---------HHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNE----VT--I---------MTEMARIFEGLNNMPMSVKYYKLILKR  420 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~----~~--~---------~~~la~~~~~~g~~~~A~~~~~~al~~  420 (677)
                      ++.+++.+|++.+......-...    .+  .         -...+.++...|++.++...+.+.+..
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999999887766542222    11  1         124577888999999999999888764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.81  E-value=0.018  Score=61.64  Aligned_cols=166  Identities=11%  Similarity=0.020  Sum_probs=119.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhhcccchHHH-----HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q psy16607        468 CCFYSQQYDMVVTCFERALSLALNENAADV-----WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN  542 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  542 (677)
                      +.--.|+-+.+++.+.++.+...-. .+-+     ++.......   ....-.....+.|.+.+....+..|+..-..+.
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~---~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~  272 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSF---LGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF  272 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHH---cCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            3334589999999999987632111 0111     111111111   000003457789999999999999999999999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        543 LALCCFYSQQYDMVVTCFERALSLAL--NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       543 la~~~~~~g~~~~A~~~~~~al~~~~--~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      .|.++...|+.++|++.|++++....  ..-..-.++.++.++.                   .+++|++|..+|.+..+
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-------------------~~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-------------------FQHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-------------------HHchHHHHHHHHHHHHh
Confidence            99999999999999999999885211  1122345778888888                   99999999999999998


Q ss_pred             cCCCCh-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q psy16607        621 IDSSHG-LSQNNLAVLEAREGHI-------ERASTYLQAAAASS  656 (677)
Q Consensus       621 ~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  656 (677)
                      .+.-.. -..+..|.++...|+.       ++|.++|.++-.+.
T Consensus       334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            765433 3456678899999999       88888888876643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1585|consensus

Probab=97.80  E-value=0.0037  Score=57.79  Aligned_cols=192  Identities=10%  Similarity=0.046  Sum_probs=120.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCcHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY-----PNEVTIMT  395 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~  395 (677)
                      ..-+.++....+|++|...+.++.+-..       -..++-..+.+...+..+.++..+++++....     |+....-.
T Consensus        35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal  114 (308)
T KOG1585|consen   35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL  114 (308)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence            3445556666777777777777764322       13445555566666677777777777776543     33333333


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCHHHHH
Q psy16607        396 EMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQM------GLYNAELFN  463 (677)
Q Consensus       396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~  463 (677)
                      ..+--....-++++|+++|++++.+-...      .+.+...+.++.+..++.+|-..+.+-...      .+..-..+.
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v  194 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV  194 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence            44444556778889999999887764332      345566778888888888887777654322      223334455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR  528 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~  528 (677)
                      ....+|....+|..|..+++...++..-.  +...+..+|-..|         ..|+.++...++.-
T Consensus       195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay---------d~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY---------DEGDIEEIKKVLSS  252 (308)
T ss_pred             HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh---------ccCCHHHHHHHHcC
Confidence            55566677779999999998876653211  1255566666665         67888877766543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.71  E-value=0.02  Score=59.38  Aligned_cols=54  Identities=13%  Similarity=0.072  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCCC
Q psy16607        606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-----------------IERASTYLQAAAASSPYL  659 (677)
Q Consensus       606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~  659 (677)
                      +..++++..|.++.+.+|....+|+.+|..+...=+                 ...|+..|-+++...++.
T Consensus       272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence            889999999999999999999999999887765411                 245888888999888873

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.71  E-value=3.1e-05  Score=48.82  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=29.2

Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  646 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  646 (677)
                      +|+++++++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378889999999999999999999999999886

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.69  E-value=8.7e-05  Score=50.28  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=14.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHH
Q psy16607        395 TEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACI  431 (677)
Q Consensus       395 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  431 (677)
                      ..+|.+|...|++++|++.|+++++.+|+++.++..+
T Consensus         5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            3333344444444444444444444444333333333

>KOG4642|consensus

Probab=97.69  E-value=0.00011  Score=67.38  Aligned_cols=94  Identities=15%  Similarity=0.029  Sum_probs=70.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ  440 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  440 (677)
                      ..-|..|+.-.+|+.|+..|.+++.++|..+..+.+.+.++.+.++++.+...-+++++++|+.+..++.+|........
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34455566666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHHc
Q psy16607        441 PEVALLFYRRLLQM  454 (677)
Q Consensus       441 ~~~A~~~~~~al~~  454 (677)
                      +++|+..+.++..+
T Consensus        94 ~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   94 YDEAIKVLQRAYSL  107 (284)
T ss_pred             ccHHHHHHHHHHHH
Confidence            77777777777543

>KOG3616|consensus

Probab=97.66  E-value=0.015  Score=61.90  Aligned_cols=253  Identities=12%  Similarity=0.102  Sum_probs=134.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHH--HHcCCC----------cHHHHHHHHHHHHHcCChhHHHHHHHH------HHHhC---
Q psy16607        363 MIRVYIRLDQPIRAIDIGRNA--LDCYPN----------EVTIMTEMARIFEGLNNMPMSVKYYKL------ILKRD---  421 (677)
Q Consensus       363 la~~~~~~g~~~~A~~~~~~a--l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~---  421 (677)
                      ...+|.+.|.+.+|......-  +..+.+          ..+.|-.-|.++.+..++++|+++|++      ++++.   
T Consensus       621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa  700 (1636)
T KOG3616|consen  621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA  700 (1636)
T ss_pred             HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh
Confidence            345677777777766543221  111110          122344556777777788888888765      33331   


Q ss_pred             -cCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH
Q psy16607        422 -ATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  499 (677)
Q Consensus       422 -p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  499 (677)
                       |.. ...--..|..+.+.|+++.|+..|-++-.        ............++.+|+..++........   ...+-
T Consensus       701 fp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~---s~yy~  769 (1636)
T KOG3616|consen  701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTA---SGYYG  769 (1636)
T ss_pred             CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc---cccch
Confidence             221 12223457777788888888887765421        122223344556677777766655443322   22333


Q ss_pred             HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH-HHHH
Q psy16607        500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD-VWYN  578 (677)
Q Consensus       500 ~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~-~~~~  578 (677)
                      .++.-|.        ..|+++.|.+.|.++        .....-...|.+.|++++|.++-++...    |.... .|..
T Consensus       770 ~iadhya--------n~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~----~e~t~~~yia  829 (1636)
T KOG3616|consen  770 EIADHYA--------NKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG----PEATISLYIA  829 (1636)
T ss_pred             HHHHHhc--------cchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC----chhHHHHHHH
Confidence            4455554        677777777777654        2233344566677777777666655532    33322 2222


Q ss_pred             HHHHHHHhhcCCCCcccchhhh-HHhcCCCHHHHHHHHHHHHc----------cCCCC-hHHHHHHHHHHHHcCCHHHHH
Q psy16607        579 ISHVAIITECSPFSFSTHTSYL-FIQGISDTRLAIQCLHLALS----------IDSSH-GLSQNNLAVLEAREGHIERAS  646 (677)
Q Consensus       579 l~~~~~~~~~~p~~~~~~~~~~-~l~~~g~~~~A~~~~~~al~----------~~p~~-~~~~~~la~~~~~~g~~~~A~  646 (677)
                      .+.-+..   ..+    ..... .|...|..+.|+..|++.-.          ..|++ .+.+..+|.-+...|+...|.
T Consensus       830 kaedlde---hgk----f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae  902 (1636)
T KOG3616|consen  830 KAEDLDE---HGK----FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE  902 (1636)
T ss_pred             hHHhHHh---hcc----hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence            2222210   000    00000 22244555555555554311          12322 356778888888889988888


Q ss_pred             HHHHHHH
Q psy16607        647 TYLQAAA  653 (677)
Q Consensus       647 ~~~~~al  653 (677)
                      ..|-++-
T Consensus       903 ~~flea~  909 (1636)
T KOG3616|consen  903 EHFLEAG  909 (1636)
T ss_pred             HHHHhhh
Confidence            8776653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.65  E-value=0.17  Score=56.49  Aligned_cols=294  Identities=16%  Similarity=0.090  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHccC---C--CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCC--cHH----HHHHHHHHHHHcCCh
Q psy16607        340 IREAQQQFNSALNQF---T--DIEAFIRMIRVYI-RLDQPIRAIDIGRNALDCYPN--EVT----IMTEMARIFEGLNNM  407 (677)
Q Consensus       340 ~~~A~~~~~~al~~~---p--~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~g~~  407 (677)
                      ...|+++++-+++..   |  ...+.+.+|.++. ...+++.|..++.+++.+...  -.+    ..+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            345777777777432   2  5667788888887 678888898888888766533  222    344667778777776


Q ss_pred             hHHHHHHHHHHHhCcC----CHHHHHHH--HHHHHhCCChHHHHHHHHHHHHcC--CCCHHHH----HHHHHHHHHcCCH
Q psy16607        408 PMSVKYYKLILKRDAT----CMEAIACI--GVNHFYNDQPEVALLFYRRLLQMG--LYNAELF----NNLALCCFYSQQY  475 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~----~~la~~~~~~g~~  475 (677)
                      . |....++.++....    .....+.+  ...+...+++..|++.++......  ..++.+.    ...+.+....+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            6 88888888876544    11112222  222223378888999888887765  3444332    3345666677778


Q ss_pred             HHHHHHHHHHHhhhc------cc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH---HHH---cCC---C---
Q psy16607        476 DMVVTCFERALSLAL------NE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR---LLQ---MGL---Y---  535 (677)
Q Consensus       476 ~~A~~~~~~al~~~p------~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~---al~---~~p---~---  535 (677)
                      +++++.+.++.....      +.  ....+|..+-.+..      .+..|++..+...+++   .++   ..+   .   
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~------~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~  269 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCC------SLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDE  269 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCC
Confidence            888888777743221      11  11334444433332      2356776665554443   331   111   0   


Q ss_pred             c------------------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc--------------
Q psy16607        536 N------------------------------AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN--------------  571 (677)
Q Consensus       536 ~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~--------------  571 (677)
                      +                              .-+|..-|......+..++|.++++++++...+-.              
T Consensus       270 d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~  349 (608)
T PF10345_consen  270 DGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEA  349 (608)
T ss_pred             CeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHH
Confidence            0                              01233345566677777799999999887532111              


Q ss_pred             -hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC---CC------ChHHHHHHHHHHHHcCC
Q psy16607        572 -AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID---SS------HGLSQNNLAVLEAREGH  641 (677)
Q Consensus       572 -~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~  641 (677)
                       ....|...-.++.          .....|...-.+++..|....+.+....   |.      .+..++..|..+...|+
T Consensus       350 ~~~~~~~~~l~~~~----------~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~  419 (608)
T PF10345_consen  350 SERIQWLRYLQCYL----------LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGD  419 (608)
T ss_pred             HHhHHHHHHHHHHH----------HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCC
Confidence             0011222211111          0011224448899999999888777543   22      35678889999999999


Q ss_pred             HHHHHHHHH
Q psy16607        642 IERASTYLQ  650 (677)
Q Consensus       642 ~~~A~~~~~  650 (677)
                      .+.|...|.
T Consensus       420 l~~A~~~y~  428 (608)
T PF10345_consen  420 LEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHh
Confidence            999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1914|consensus

Probab=97.65  E-value=0.11  Score=54.04  Aligned_cols=327  Identities=13%  Similarity=0.036  Sum_probs=198.8

Q ss_pred             hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHcc---CC-CHHHHHHHHHHHH---
Q psy16607        300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQ----QFNSALNQ---FT-DIEAFIRMIRVYI---  368 (677)
Q Consensus       300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~----~~~~al~~---~p-~~~~~~~la~~~~---  368 (677)
                      +..++|+....+|.+.+... .+...|...+-.+-...|+...+..    .|+-++..   ++ ...+|...+..+.   
T Consensus        64 l~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve  142 (656)
T KOG1914|consen   64 LASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE  142 (656)
T ss_pred             HHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc
Confidence            44689999999999999766 4455565666666666666555433    34434332   22 3344444433332   


Q ss_pred             ------HcCChHHHHHHHHHHHHcCCCcHHH-HH-------------HHHHHHHHcCChhHHHHHHHHHH----------
Q psy16607        369 ------RLDQPIRAIDIGRNALDCYPNEVTI-MT-------------EMARIFEGLNNMPMSVKYYKLIL----------  418 (677)
Q Consensus       369 ------~~g~~~~A~~~~~~al~~~p~~~~~-~~-------------~la~~~~~~g~~~~A~~~~~~al----------  418 (677)
                            ...+.+.-...|++++..--.+.+- |.             ..-.+-.....|..|...+++..          
T Consensus       143 a~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~  222 (656)
T KOG1914|consen  143 AVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNA  222 (656)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccC
Confidence                  2235666778888887654333221 11             00111112223333433333322          


Q ss_pred             --------------------------------------------------HhCcCCHHHHHHHHHHHHhCCC--------
Q psy16607        419 --------------------------------------------------KRDATCMEAIACIGVNHFYNDQ--------  440 (677)
Q Consensus       419 --------------------------------------------------~~~p~~~~~~~~la~~~~~~g~--------  440 (677)
                                                                        ..-+..++.|+..+..+...++        
T Consensus       223 ~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~  302 (656)
T KOG1914|consen  223 PAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDV  302 (656)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccc
Confidence                                                              2222345666655554444444        


Q ss_pred             ------hHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhh
Q psy16607        441 ------PEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAILNAL  510 (677)
Q Consensus       441 ------~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l  510 (677)
                            .+++..+|++++... ..+...++.++..-...-   +++..-..+.+.+.+...+ ..-+|.++-....    
T Consensus       303 ~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~ir----  377 (656)
T KOG1914|consen  303 PDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-LTLVYCQYMNFIR----  377 (656)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-CceehhHHHHHHH----
Confidence                  567778888877643 223334444444333222   3666667777777664443 1233444444443    


Q ss_pred             cccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607        511 STSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL-CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS  589 (677)
Q Consensus       511 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~  589 (677)
                          +..-.+.|...|.++-+.......++..-|. -|...++.+-|...|+-.+.  ..++.+..-......+.     
T Consensus       378 ----R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~-----  446 (656)
T KOG1914|consen  378 ----RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLS-----  446 (656)
T ss_pred             ----HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHH-----
Confidence                5566888889999888655444444444443 35678999999999999998  77888877666666666     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHcc--CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSI--DSS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                                    ..++-..|...|++++..  .++ ..+.|...-..-..-|+....+++-++-....|
T Consensus       447 --------------~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  447 --------------HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             --------------HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence                          999999999999999986  332 347788888888888999998888887777666

>KOG4642|consensus

Probab=97.65  E-value=0.0001  Score=67.49  Aligned_cols=116  Identities=18%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607        512 TSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF  591 (677)
Q Consensus       512 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~  591 (677)
                      .++...+|..|+.+|.+++.++|..+..|.+.+.|+.+.++++.......++++  +.|+.+..++.+|.+..       
T Consensus        19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l-------   89 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLL-------   89 (284)
T ss_pred             cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHH-------
Confidence            355666788888888888888888888888888888888888888888888888  78888888888888887       


Q ss_pred             CcccchhhhHHhcCCCHHHHHHHHHHHHccCCC-----ChHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS-----HGLSQNNLAVLEAREGHIERASTY  648 (677)
Q Consensus       592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~  648 (677)
                                  ....|++|+..+.++..+...     -.+.+..|-.+-...=...++...
T Consensus        90 ------------~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri  139 (284)
T KOG4642|consen   90 ------------QSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI  139 (284)
T ss_pred             ------------hhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence                        888888888888888654221     134555554444333334444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.63  E-value=0.18  Score=56.32  Aligned_cols=319  Identities=12%  Similarity=0.096  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHhhC---cCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcCCh
Q psy16607        305 VASAMDLAVESTKAC---EFRDWWWKVQLGKCYF-SLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLDQP  373 (677)
Q Consensus       305 ~~~A~~~~~~a~~~~---p~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~  373 (677)
                      ...|+.+++-+++..   |......++.+|.+++ ...++++|..++++++.+..       .....+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            446788888887432   2334456678999888 56999999999999987653       134456778888888877


Q ss_pred             HHHHHHHHHHHHcCCC----cHHHHHHH--HHHHHHcCChhHHHHHHHHHHHhCc--CCHHH----HHHHHHHHHhCCCh
Q psy16607        374 IRAIDIGRNALDCYPN----EVTIMTEM--ARIFEGLNNMPMSVKYYKLILKRDA--TCMEA----IACIGVNHFYNDQP  441 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~----~~~la~~~~~~g~~  441 (677)
                      . |...+++.++....    .....+.+  ...+...+++..|++.++.......  .+..+    ....+.++...+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            7 99999998876544    12222222  2333334799999999999887753  34332    23335666777888


Q ss_pred             HHHHHHHHHHHHcCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---hc---c---c-ch--
Q psy16607        442 EVALLFYRRLLQMGL----------YNAELFNNLAL--CCFYSQQYDMVVTCFERA---LSL---AL---N---E-NA--  494 (677)
Q Consensus       442 ~~A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~p---~---~-~~--  494 (677)
                      +++++..+++.....          ....+|..+-.  ++...|+++.+...+++.   +..   .+   .   + .+  
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l  275 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL  275 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence            888888888754221          11234444433  455677777776655443   211   11   0   0 00  


Q ss_pred             --------------HHHHH----HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-------CCc-------------
Q psy16607        495 --------------ADVWY----NISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-------LYN-------------  536 (677)
Q Consensus       495 --------------~~~~~----~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-------p~~-------------  536 (677)
                                    .-.|.    ....+|.+..+ .....+..++|.+++.++++.-       +..             
T Consensus       276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l-~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~  354 (608)
T PF10345_consen  276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGL-HNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ  354 (608)
T ss_pred             ecccccccCCCceeEEeecCHHHHHHHHHHHHHH-HHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence                          00010    11111111111 1124555557777777776321       110             


Q ss_pred             ------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc-c------chHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        537 ------AELFNNLALCCFYSQQYDMVVTCFERALSLALN-E------NAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       537 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-p------~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                            ..+.+..+.+..-.+++..|...++.+...... |      -.+..++..|..+.                   
T Consensus       355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q-------------------  415 (608)
T PF10345_consen  355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ-------------------  415 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH-------------------
Confidence                  113345677778889999999999988764321 2      23567888888887                   


Q ss_pred             cCCCHHHHHHHHH--------HHHccCCCCh---HHHHHHHHHHHHcCCHHH
Q psy16607        604 GISDTRLAIQCLH--------LALSIDSSHG---LSQNNLAVLEAREGHIER  644 (677)
Q Consensus       604 ~~g~~~~A~~~~~--------~al~~~p~~~---~~~~~la~~~~~~g~~~~  644 (677)
                      ..|+.+.|+..|.        .+....+.+.   -+..++..++...+....
T Consensus       416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~  467 (608)
T PF10345_consen  416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD  467 (608)
T ss_pred             HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence            9999999999998        3333333322   234567777776665444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.62  E-value=0.0071  Score=61.23  Aligned_cols=181  Identities=10%  Similarity=0.091  Sum_probs=106.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCChhHHHHHHHHH-HHhCcCCHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC----YPNEVTIMTEMARIFEG---LNNMPMSVKYYKLI-LKRDATCMEA  427 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~  427 (677)
                      +.++...+-..|....+|+.-+.+.+.+-..    .++.+.+....|.++.+   .|+.++|+..+..+ ....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            5566666667777777777777777765554    34455556666666666   67777777777663 3334445666


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q psy16607        428 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL  507 (677)
Q Consensus       428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l  507 (677)
                      +..+|.+|...         +   ++....+.             ...++|+..|.++.+.+|+   ...-.+++.++. 
T Consensus       220 ~gL~GRIyKD~---------~---~~s~~~d~-------------~~ldkAi~~Y~kgFe~~~~---~Y~GIN~AtLL~-  270 (374)
T PF13281_consen  220 LGLLGRIYKDL---------F---LESNFTDR-------------ESLDKAIEWYRKGFEIEPD---YYSGINAATLLM-  270 (374)
T ss_pred             HHHHHHHHHHH---------H---HHcCccch-------------HHHHHHHHHHHHHHcCCcc---ccchHHHHHHHH-
Confidence            66666665432         0   11111111             1277888889999888866   333445555544 


Q ss_pred             hhhcccccCCCHHHH----HHHH---HHHH-Hc----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        508 NALSTSVYNDQPEVA----LLFY---RRLL-QM----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       508 ~~l~~~~~~~~~~~A----~~~~---~~al-~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                             ..|...+.    .+.-   ...+ +.    .-.+...+-.++.+..-.|++++|+..++++..  ..|....
T Consensus       271 -------~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W~  340 (374)
T PF13281_consen  271 -------LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAWE  340 (374)
T ss_pred             -------HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcchh
Confidence                   22322111    1111   1111 11    123344555677888889999999999999998  5555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.62  E-value=0.038  Score=57.29  Aligned_cols=305  Identities=13%  Similarity=0.037  Sum_probs=155.2

Q ss_pred             HHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHH---H
Q psy16607        297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT------DIEAFIRMIRV---Y  367 (677)
Q Consensus       297 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~---~  367 (677)
                      .+..+.|+++.    +.+.+...+.......+..+......|+++++....+++...--      ....+...-..   +
T Consensus         6 eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l   81 (352)
T PF02259_consen    6 EAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL   81 (352)
T ss_pred             HHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34566788888    33333333222333335566666688999999888888766321      11111111111   1


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCChh--HHHHHHHHHHHh----CcCCHHHHHHHHHHHHh
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNE----VTIMTEMARIFEGLNNMP--MSVKYYKLILKR----DATCMEAIACIGVNHFY  437 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~~~~  437 (677)
                      ..+...+++..+....... +..    ...|...-...  ..+++  +-+-.+++.+-.    .......|...+.+..+
T Consensus        82 q~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk  158 (352)
T PF02259_consen   82 QQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK  158 (352)
T ss_pred             hHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            1222333333333221110 111    11122111111  12221  111122222222    33456678888888888


Q ss_pred             CCChHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHhhhcc
Q psy16607        438 NDQPEVALLFYRRLLQMGL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAILNALST  512 (677)
Q Consensus       438 ~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~l~~l~~  512 (677)
                      .|+++.|...+.++....+    ..+.+....+.++...|+..+|+..++..+....... .......+..... ..   
T Consensus       159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~---  234 (352)
T PF02259_consen  159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL-ES---  234 (352)
T ss_pred             CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc-cc---
Confidence            8888888888888777542    2467777788888888888888888887776333320 0000001110000 00   


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS------QQYDMVVTCFERALSLALNENAADVWYNISHVAIIT  586 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~  586 (677)
                        ...........     ........++..+|......      +..++++..|.+++.  .+|....+|+.+|..+...
T Consensus       235 --~~~~~~~~~~~-----~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  235 --LEVISSTNLDK-----ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             --cccccccchhh-----hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHH
Confidence              00000000000     00011235667778777777      889999999999999  8899999999999877511


Q ss_pred             hcC-CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        587 ECS-PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       587 ~~~-p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                      -.. +........   -....-...|+..|-+++...+.
T Consensus       306 ~~~~~~~~~~~~~---~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  306 LESDPREKEESSQ---EDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHhhhhcccccch---hHHHHHHHHHHHHHHHHHhhCCC
Confidence            110 000000000   00111224588888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.60  E-value=0.00013  Score=46.24  Aligned_cols=34  Identities=26%  Similarity=0.160  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      +.+|+++|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00017  Score=45.60  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      +++|+.+|.++...|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0530|consensus

Probab=97.55  E-value=0.032  Score=52.36  Aligned_cols=192  Identities=14%  Similarity=0.160  Sum_probs=145.2

Q ss_pred             CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHH
Q psy16607        338 GLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKL  416 (677)
Q Consensus       338 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~  416 (677)
                      .+|.++..+|+.++..                ......|+.+-..++..+|.+-.+|...-.++..++ +..+-++++.+
T Consensus        40 e~fr~~m~YfRAI~~~----------------~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~e  103 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAK----------------NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDE  103 (318)
T ss_pred             hhHHHHHHHHHHHHhc----------------cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4566666776665433                345677888888899999999888877777666554 57778899999


Q ss_pred             HHHhCcCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchH
Q psy16607        417 ILKRDATCMEAIACIGVNHFYNDQPE-VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA  495 (677)
Q Consensus       417 al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  495 (677)
                      ++..+|++..+|...-.+....|++. .-+++.+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+  -
T Consensus       104 I~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N--N  181 (318)
T KOG0530|consen  104 IIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN--N  181 (318)
T ss_pred             HHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--c
Confidence            99999999999999988888888888 78889999999988899999999999999999999999999998877665  5


Q ss_pred             HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607        496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  549 (677)
Q Consensus       496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  549 (677)
                      .+|...-.+..  ........-..+.-+.+..+.+...|++..+|+.|.-++..
T Consensus       182 SAWN~Ryfvi~--~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  182 SAWNQRYFVIT--NTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             chhheeeEEEE--eccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            55554433221  00000011223455677788889999999999998888775

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.53  E-value=8.9e-05  Score=46.76  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607        525 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       525 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      +|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999863

>KOG0376|consensus

Probab=97.51  E-value=0.00018  Score=73.08  Aligned_cols=100  Identities=12%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                      .+..+.++.|+..|.++++++|+.+..+-+.+.++.+.+++..|+..+.++++  .+|....+|+..|.+..        
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m--------   83 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVM--------   83 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHH--------
Confidence            34445555555555555555555555555555555555555555555555555  44555555555555555        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA  633 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  633 (677)
                                 ..+++.+|+..|+....+.|+++.+...+.
T Consensus        84 -----------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   84 -----------ALGEFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             -----------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence                       555555555555555555555554444433

>KOG0530|consensus

Probab=97.51  E-value=0.041  Score=51.68  Aligned_cols=189  Identities=11%  Similarity=0.074  Sum_probs=148.5

Q ss_pred             HHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH-H
Q psy16607        298 LYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI-R  375 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~-~  375 (677)
                      ++.+...-..|+++...++..+|.+-..|.+..-..-....+..+-+.++.+++..+| +-.+|...-.+....|++. .
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            3445678899999999999999988888866655555555678888999999999888 8888988888888889888 8


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-CC-----ChHHHHHHHH
Q psy16607        376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-ND-----QPEVALLFYR  449 (677)
Q Consensus       376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~  449 (677)
                      -++..+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..
T Consensus       132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~  211 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTK  211 (318)
T ss_pred             hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999988887777655333222 12     2344566778


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q psy16607        450 RLLQMGLYNAELFNNLALCCFY-SQ--QYDMVVTCFERAL  486 (677)
Q Consensus       450 ~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al  486 (677)
                      +.+...|++..+|+.+.-++.. .|  .+.+........+
T Consensus       212 ~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~  251 (318)
T KOG0530|consen  212 DKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY  251 (318)
T ss_pred             HHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence            8899999999999999888775 44  2333444444433

>KOG0376|consensus

Probab=97.46  E-value=0.00021  Score=72.64  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=85.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP  441 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  441 (677)
                      ..+...+..+.++.|+..|.++++++|++...+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.++...+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            34555666777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        442 EVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       442 ~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      .+|+..|+......|+++.+...+-.|-
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            8888888888888888887766665543

>KOG0545|consensus

Probab=97.45  E-value=0.0014  Score=60.52  Aligned_cols=106  Identities=11%  Similarity=0.019  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHh------hccchH----------HHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLA------LNENAA----------DVWYNISHVAIITECSPFSFSTHTSYLF  601 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~p~~~----------~~~~~l~~~~~~~~~~p~~~~~~~~~~~  601 (677)
                      .++..-|.-+++.|+|.+|...|..|+..-      ..|..+          ..+.+...|+.                 
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-----------------  241 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-----------------  241 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-----------------
Confidence            344556777777888888887777776432      224333          34667888888                 


Q ss_pred             HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                        ..|+|-++++.....+...|.+..+++..|.+....=+.++|.+.|.++++++|.-..+
T Consensus       242 --~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  242 --KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             --hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence              99999999999999999999999999999999999999999999999999999976543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.41  E-value=0.16  Score=50.42  Aligned_cols=63  Identities=16%  Similarity=-0.058  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607        427 AIACIGVNHFYNDQPE---VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  489 (677)
Q Consensus       427 ~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  489 (677)
                      ++..++.+|...+.++   +|....+.+-...|+.+..+...-.++.+.++.+++.+.+.+++...
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            4445566665555433   34444444444556556555554455555666666666666666543

It is also involved in sporulation [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.021  Score=54.86  Aligned_cols=151  Identities=16%  Similarity=0.023  Sum_probs=94.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-VTIMTEMARIFEGLN  405 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g  405 (677)
                      +..+......|++.+|...|..++...| +.++...++.++...|+.+.|...+...-...... ...+......+.+..
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence            4566667777888888888888888777 77778888888888888877777766532222211 111111223333333


Q ss_pred             ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHH
Q psy16607        406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDMVV  479 (677)
Q Consensus       406 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~  479 (677)
                      ...+.. .+++.+..+|++.++.+.++..+...|+.++|++.+-..++.+.  .+..+...+-.++...|.-+.+.
T Consensus       218 ~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         218 ATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             cCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence            333322 33455667788888888888888888888888888877777643  34455555555555555333333

>KOG4507|consensus

Probab=97.40  E-value=0.016  Score=60.16  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=88.9

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      ..|+...|+.++..++...|.... ...+|+.++.+.|...+|-.++.+++.  +....+-.++.+|..+.         
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~--~~~sepl~~~~~g~~~l---------  687 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA--INSSEPLTFLSLGNAYL---------  687 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh--hcccCchHHHhcchhHH---------
Confidence            579999999999999988886543 577899999999999999999999999  66777888999999998         


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  637 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  637 (677)
                                .+.+.+.|++.|+.+++.+|++++.-..|-.+-+
T Consensus       688 ----------~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  688 ----------ALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             ----------HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence                      9999999999999999999999877666555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.36  E-value=0.044  Score=55.64  Aligned_cols=177  Identities=7%  Similarity=-0.033  Sum_probs=110.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccC----C-CHHHHHHHHHHHHH---cCChHHHHHHHHH-HHHcCCCcHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQF----T-DIEAFIRMIRVYIR---LDQPIRAIDIGRN-ALDCYPNEVTIMTEMA  398 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~----p-~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~~la  398 (677)
                      ..+-.+|....+|+.-+++.+.+-...    + ...+.+..|.++.+   .|+.++|+..+.. +....+.+++.+..+|
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            456667888899999999998877663    2 56777888888988   9999999999999 5556677899999999


Q ss_pred             HHHHHc---------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        399 RIFEGL---------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       399 ~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      .+|...         ...++|+..|.++.+.+|+. -.=.+++.++...|...+...-.++..          ..+....
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l~~ll  293 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VKLSSLL  293 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HHHHHHH
Confidence            998642         23566777777777776532 222344444444444222221111111          1111222


Q ss_pred             HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      .+.|..+.-           .+   .-....+..+..        -.|++++|++.++++++..|...
T Consensus       294 g~kg~~~~~-----------~d---YWd~ATl~Ea~v--------L~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  294 GRKGSLEKM-----------QD---YWDVATLLEASV--------LAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             Hhhcccccc-----------cc---HHHHHHHHHHHH--------HcCCHHHHHHHHHHHhhcCCcch
Confidence            222211111           11   112223333333        57999999999999999876654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.36  E-value=0.00036  Score=48.72  Aligned_cols=39  Identities=28%  Similarity=0.535  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhh
Q psy16607         15 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMR   53 (677)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (677)
                      +|.|+.+++.|+|++|...|+.+|+++|.|.+|-.||..
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            789999999999999999999999999999999988754

>KOG1258|consensus

Probab=97.36  E-value=0.28  Score=51.92  Aligned_cols=117  Identities=10%  Similarity=0.126  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHH-HHHHHHcCChHHHHHHHHH
Q psy16607        305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRM-IRVYIRLDQPIRAIDIGRN  382 (677)
Q Consensus       305 ~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l-a~~~~~~g~~~~A~~~~~~  382 (677)
                      .+.+...|...+...|.-...| -..|..-.+.|..+.+.+.|++.+.--| ....|... +.+....|+...-...|++
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW-~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~  139 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYW-KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER  139 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            3567778888888888777777 5889999999999999999999999888 66666544 3344456788888888888


Q ss_pred             HHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607        383 ALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDA  422 (677)
Q Consensus       383 al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  422 (677)
                      +......+   ...|-........++++..-...|++.++.--
T Consensus       140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~  182 (577)
T KOG1258|consen  140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL  182 (577)
T ss_pred             HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Confidence            88766543   33455555555677888888888888877533

>KOG0545|consensus

Probab=97.33  E-value=0.0048  Score=57.02  Aligned_cols=100  Identities=9%  Similarity=-0.021  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILK------------------RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      ++...|+-+++.|+|.+|...|+.++.                  ++......+.+++.|+...|+|-++++....++..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            344445555555555555555554432                  12223456677888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      .|.+..+++..|.+....=+..+|...|.++++++|.-
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            88888888888888888888888888888888888764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.015  Score=55.90  Aligned_cols=148  Identities=9%  Similarity=-0.050  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-HHHHHHHHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHF  436 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~  436 (677)
                      +.-+..+.-....|++.+|...+..++...|++.++...++.+|...|+.+.|...+...-...... ...+......+.
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            3445556667788999999999999999999999999999999999999999988887642222211 111111123333


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      +.....+. ..+++.+..+|++.++.+.++..+...|++++|.+.+-..+..+.......+...+-.++.
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~  283 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE  283 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence            33333322 2345667789999999999999999999999999999988887655433444444444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.29  E-value=0.23  Score=49.40  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      .+.+.|...++.++|++|+.+|+-++.
T Consensus       248 LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  248 LLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            345668889999999999999998774

It is also involved in sporulation [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.28  E-value=0.00052  Score=47.96  Aligned_cols=40  Identities=28%  Similarity=0.507  Sum_probs=35.2

Q ss_pred             HHHHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhh
Q psy16607        120 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRS  159 (677)
Q Consensus       120 ~~~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~  159 (677)
                      |++|+.+++.|+|++|...|+.+|+..|+++.+..++..+
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            6899999999999999999999999999999999887654

>KOG0890|consensus

Probab=97.25  E-value=0.35  Score=59.17  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHH---Hc----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCC
Q psy16607        519 PEVALLFYRRLL---QM----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF  591 (677)
Q Consensus       519 ~~~A~~~~~~al---~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~  591 (677)
                      ..+-+-.+++++   ..    +....++|...|.+....|+++.|..++-.|.+  .  .-+.+....+..++       
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e--~--r~~~i~~E~AK~lW------- 1713 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE--S--RLPEIVLERAKLLW------- 1713 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--c--ccchHHHHHHHHHH-------
Confidence            444445555554   12    334578999999999999999999999998887  2  36778888888888       


Q ss_pred             CcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-----------------hHHHHHHHHHHHHcCCH--HHHHHHHHHH
Q psy16607        592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-----------------GLSQNNLAVLEAREGHI--ERASTYLQAA  652 (677)
Q Consensus       592 ~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~--~~A~~~~~~a  652 (677)
                                  ..|+-..|+..+++.++.+-.+                 ..+...++......|++  ++-+.+|..+
T Consensus      1714 ------------~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1714 ------------QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred             ------------hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                        9999999999999999654221                 12334444555555653  4567889999


Q ss_pred             HHhCCCChHHHHHHHHHHH
Q psy16607        653 AASSPYLYETHYNQAVISN  671 (677)
Q Consensus       653 l~~~p~~~~~~~~la~~~~  671 (677)
                      .++.|...+.+|.+|.-|.
T Consensus      1782 ~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred             HHHcccccCceeeHHHHHH
Confidence            9999988888888885543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.19  E-value=0.00073  Score=42.70  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666777777777777777777777766664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.17  E-value=0.36  Score=49.28  Aligned_cols=50  Identities=12%  Similarity=0.032  Sum_probs=43.8

Q ss_pred             HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  652 (677)
Q Consensus       602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  652 (677)
                      ++..|+|.++.-+-.=..++.| ++.++..+|.++....+|++|..++...
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            4589999999988888888999 7899999999999999999999988763

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.16  E-value=0.0072  Score=64.62  Aligned_cols=115  Identities=12%  Similarity=0.018  Sum_probs=73.4

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRA  376 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A  376 (677)
                      ..+.+.|.+++....+..| +...|++..|+.+...|+.++|+..|++++....     ..-.++.++.++..+.+|++|
T Consensus       246 ~~~~~~a~~lL~~~~~~yP-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYP-NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            4566777777777777774 4555557778888888888888888887765322     334556667777777777777


Q ss_pred             HHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCh-------hHHHHHHHHH
Q psy16607        377 IDIGRNALDCYPNEVT-IMTEMARIFEGLNNM-------PMSVKYYKLI  417 (677)
Q Consensus       377 ~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~a  417 (677)
                      ..++.++.+.+..... ..+..|.++...|+.       ++|.++|.++
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            7777776665544333 334555566666666       4455554444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2041|consensus

Probab=97.15  E-value=0.061  Score=57.18  Aligned_cols=182  Identities=10%  Similarity=-0.068  Sum_probs=115.8

Q ss_pred             HHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH----------HHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607        350 ALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM----------TEMARIFEGLNNMPMSVKYYKLILK  419 (677)
Q Consensus       350 al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~  419 (677)
                      .++.+|+++.|..++......-.++.|...|-+.-.. +. ....          ...+.+-.--|++++|.+.|-.+-+
T Consensus       685 fiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr  762 (1189)
T KOG2041|consen  685 FIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR  762 (1189)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence            3455789999999999888877777777777664221 11 1111          2344555556889999888865532


Q ss_pred             hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607        420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV  497 (677)
Q Consensus       420 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  497 (677)
                      .+   .     ...++.+.|++-...++++..-.-.  .....++.++|..+..+..+++|.++|.+.-...        
T Consensus       763 rD---L-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------  826 (1189)
T KOG2041|consen  763 RD---L-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------  826 (1189)
T ss_pred             hh---h-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------
Confidence            21   1     1234556666666665554322111  1124689999999999999999999998764332        


Q ss_pred             HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607        498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  563 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  563 (677)
                        +...++.        ...++++    ++.+...-|++...+-.+|..+...|.-++|.+.|-+.
T Consensus       827 --~~~ecly--------~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  827 --NQIECLY--------RLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             --hHHHHHH--------HHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence              2233333        3333333    23344456788888888999999999999998887654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.08  E-value=0.0013  Score=41.42  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      .+++.+|.++...|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45556666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.07  E-value=0.43  Score=48.55  Aligned_cols=175  Identities=11%  Similarity=0.109  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607        447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY  526 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~  526 (677)
                      .+++++...+-.+++|+.....+...++-+.|+...++++...|.     ....++.++.        ...+-+....+|
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~ye--------l~nd~e~v~~~f  356 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYE--------LVNDEEAVYGCF  356 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHh--------hcccHHHHhhhH
Confidence            456666666777788888888888888888888888888777665     2334444443        233333333344


Q ss_pred             HHHHH-------c-----------CCC-cHH-----------HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHH
Q psy16607        527 RRLLQ-------M-----------GLY-NAE-----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW  576 (677)
Q Consensus       527 ~~al~-------~-----------~p~-~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~  576 (677)
                      +++.+       .           ++. .++           +|+..-..-.+..-.+.|...|-++-+......+..+.
T Consensus       357 dk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~  436 (660)
T COG5107         357 DKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIY  436 (660)
T ss_pred             HHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeee
Confidence            43331       0           010 011           11212222223333455666666655422112222222


Q ss_pred             HHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        577 YNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       577 ~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      ...-.                    +...|++.-|-..|+-.+...|+++..-...-..+...++-..|..+|++++.
T Consensus       437 ~A~~E--------------------~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         437 CAFIE--------------------YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             HHHHH--------------------HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence            22222                    22666777777777777776666655555555555666666666666665554

>KOG0890|consensus

Probab=97.07  E-value=0.35  Score=59.13  Aligned_cols=301  Identities=13%  Similarity=0.095  Sum_probs=184.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccC-C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQF-T---DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL  404 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~-p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  404 (677)
                      .++.+-++.+.|..|+-++++-.... +   ....+..+-.+|...++++.-.-..... ...|    .+......+...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILEHEAS 1462 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHHHHhh
Confidence            57888899999999999999962211 1   3344455556999999998877666541 1222    244555667788


Q ss_pred             CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHH
Q psy16607        405 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA-LCCFYSQQYDMVVTCFE  483 (677)
Q Consensus       405 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~  483 (677)
                      |++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++ .+-++.++++.-..+..
T Consensus      1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            99999999999999999998877777777788888888888877776666555555555443 33466666665554432


Q ss_pred             -------------HH-HhhhcccchHHHHHHHHHHH--HHhhhcccccCCCHHHHHHHHHHHH-------------HcCC
Q psy16607        484 -------------RA-LSLALNENAADVWYNISHVA--ILNALSTSVYNDQPEVALLFYRRLL-------------QMGL  534 (677)
Q Consensus       484 -------------~a-l~~~p~~~~~~~~~~l~~~~--~l~~l~~~~~~~~~~~A~~~~~~al-------------~~~p  534 (677)
                                   +. +.....+ ....+..+....  ....+...-..|-+..+.+..-++.             ...+
T Consensus      1543 ~~n~e~w~~~~~g~~ll~~~~kD-~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~ 1621 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKD-EIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSY 1621 (2382)
T ss_pred             cccccchhHHHHHHHHHhhcccc-hhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence                         11 1111111 000000000000  0000000001112222222222211             1111


Q ss_pred             -----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-h----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607        535 -----YNAELFNNLALCCFYSQQYDMVVTCFERALSLA-L----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG  604 (677)
Q Consensus       535 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~  604 (677)
                           .+..-|.+....-....+..+-+-.+++++-.. .    +..-.+.|...+.+..                   .
T Consensus      1622 ~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-------------------~ 1682 (2382)
T KOG0890|consen 1622 DEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-------------------L 1682 (2382)
T ss_pred             cccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-------------------h
Confidence                 112344444433333334555555566654321 1    2344577888888887                   8


Q ss_pred             CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       605 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      .|+++.|..++-.|.+..  -+++....|..++..|+...|+..+++.++.+
T Consensus      1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            999999999999998876  57889999999999999999999999999764

>KOG0551|consensus

Probab=97.04  E-value=0.02  Score=55.65  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      .-+..-|.-|++.++|..|+.+|.+.+...-.+  .....|.+.+.+..        ..|+|..|+..+.+++..+|.+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~--------~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL--------YLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHhcCcchh
Confidence            344456777888888888888888888764433  23556667777766        78889999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      .+++.-+.|+..+.++++|..+++..+.
T Consensus       154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  154 KAYIRGAKCLLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999988888876

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.02  E-value=0.0013  Score=41.53  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      .+|+.+|.++..+|++++|..+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999953

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.02  E-value=0.45  Score=47.77  Aligned_cols=192  Identities=16%  Similarity=0.088  Sum_probs=107.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV  514 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~  514 (677)
                      +++..+...+..+-..  .++.....++.+|...    .+..+|...|+.+.+.  ..  +.+.+.+|.++.... +   
T Consensus        55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g~--~~a~~~lg~~~~~G~-g---  124 (292)
T COG0790          55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GL--AEALFNLGLMYANGR-G---  124 (292)
T ss_pred             ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--cc--HHHHHhHHHHHhcCC-C---
Confidence            3444444444444331  1223444444444432    2355555555533322  11  455556666654000 0   


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQ-------QYDMVVTCFERALSLALNENAADVWYNISHVAIIT  586 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~  586 (677)
                      -..+..+|..+|.++.+..-.. ..+.+.++.++..-.       +...|...|.++...    .+..+...+|.+|.. 
T Consensus       125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----~~~~a~~~lg~~y~~-  199 (292)
T COG0790         125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----GNPDAQLLLGRMYEK-  199 (292)
T ss_pred             cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh----cCHHHHHHHHHHHHc-
Confidence            1225666666666666554333 234555666555531       224677888877762    367777788877740 


Q ss_pred             hcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q psy16607        587 ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---------------HIERASTYLQA  651 (677)
Q Consensus       587 ~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~  651 (677)
                                    -+.-..++.+|...|.++-+...  ....+.++ ++...|               +...|...+.+
T Consensus       200 --------------G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~  262 (292)
T COG0790         200 --------------GLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK  262 (292)
T ss_pred             --------------CCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence                          01124478888888888888765  77778888 666655               78888888888


Q ss_pred             HHHhCCCChHH
Q psy16607        652 AAASSPYLYET  662 (677)
Q Consensus       652 al~~~p~~~~~  662 (677)
                      +....+.....
T Consensus       263 ~~~~~~~~~~~  273 (292)
T COG0790         263 ACELGFDNACE  273 (292)
T ss_pred             HHHcCChhHHH
Confidence            87776655433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.02  E-value=0.016  Score=51.37  Aligned_cols=57  Identities=18%  Similarity=0.184  Sum_probs=25.7

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      ..++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.02  E-value=0.092  Score=52.80  Aligned_cols=177  Identities=18%  Similarity=0.151  Sum_probs=124.5

Q ss_pred             HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607        470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  549 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  549 (677)
                      ...+.+..+...+.++-...  +  ......++.++....    ....+..+|+.+|+.+  ....++...+.+|.+|..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~~--~--~~a~~~l~~~y~~g~----gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~  121 (292)
T COG0790          52 AYPPDYAKALKSYEKAAELG--D--AAALALLGQMYGAGK----GVSRDKTKAADWYRCA--AADGLAEALFNLGLMYAN  121 (292)
T ss_pred             cccccHHHHHHHHHHhhhcC--C--hHHHHHHHHHHHhcc----CccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhc
Confidence            35577888888888876522  1  456777777775111    1345689999999954  445677889999999987


Q ss_pred             ----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC
Q psy16607        550 ----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH  625 (677)
Q Consensus       550 ----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~  625 (677)
                          ..+..+|..+|+++...+ ++.-..+...++.+|..-.            .......+...|...|.++-...  +
T Consensus       122 G~gv~~d~~~A~~~~~~Aa~~g-~~~a~~~~~~l~~~~~~g~------------~~~~~~~~~~~A~~~~~~aa~~~--~  186 (292)
T COG0790         122 GRGVPLDLVKALKYYEKAAKLG-NVEAALAMYRLGLAYLSGL------------QALAVAYDDKKALYLYRKAAELG--N  186 (292)
T ss_pred             CCCcccCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHcCh------------hhhcccHHHHhHHHHHHHHHHhc--C
Confidence                458999999999999832 1111344778888775000            00001113357999999987765  7


Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        626 GLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       626 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      +.+...+|.+|..    ..++.+|..+|.++.+...  ..+.+.++ +++..|
T Consensus       187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            8899999988865    3489999999999999887  88899999 555544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.01  E-value=0.85  Score=50.74  Aligned_cols=235  Identities=11%  Similarity=-0.018  Sum_probs=147.8

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC--C-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT--C-------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN--  458 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--  458 (677)
                      ++......+.......++.+|.....++...-+.  .       .......|.+....|++++|+++.+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3455667788888899999999988887665443  1       2333445778888999999999999999876654  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHH--HHHHHHhhhcccccCCCHH--HHHHHHHHH
Q psy16607        459 ---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNI--SHVAILNALSTSVYNDQPE--VALLFYRRL  529 (677)
Q Consensus       459 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l--~~~~~l~~l~~~~~~~~~~--~A~~~~~~a  529 (677)
                         ..+...+|.+..-.|++++|..+...+.+.....  .+..+|..+  +.++.        .+|+..  +....+...
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~--------~qGq~~~a~~~~~~~~~  565 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE--------AQGQVARAEQEKAFNLI  565 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHH
Confidence               3567788999999999999999999988775432  123333333  34444        667332  222222222


Q ss_pred             ----HHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc--cc--hHH-HHHHHHHHHHHhhcCCCCcccchhhh
Q psy16607        530 ----LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN--EN--AAD-VWYNISHVAIITECSPFSFSTHTSYL  600 (677)
Q Consensus       530 ----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--p~--~~~-~~~~l~~~~~~~~~~p~~~~~~~~~~  600 (677)
                          +...|.+.......+.++..--+++.+..-....++....  |.  ... ..+.++.++.                
T Consensus       566 ~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~----------------  629 (894)
T COG2909         566 REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF----------------  629 (894)
T ss_pred             HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH----------------
Confidence                2334444444444444444444466666666666554321  22  222 2346777777                


Q ss_pred             HHhcCCCHHHHHHHHHHHHccCCCC-hHH------HHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        601 FIQGISDTRLAIQCLHLALSIDSSH-GLS------QNNLAVLEAREGHIERASTYLQA  651 (677)
Q Consensus       601 ~l~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~~~g~~~~A~~~~~~  651 (677)
                         ..|++++|...+.+...+..+. +.+      ..-........|+.++|.....+
T Consensus       630 ---~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         630 ---LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             ---hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence               9999999999998887653322 111      11122233457898888888777

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.99  E-value=0.021  Score=50.64  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=74.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNE----------------------VTIMTEMARIFEGLNNMPMSVKYYKLIL  418 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al  418 (677)
                      ...+......++...++..+++++.+....                      ..++..++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            344666677889999999999999876321                      1245577788889999999999999999


Q ss_pred             HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      ..+|.+..++..+..+|...|+..+|++.|++...
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998755

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.96  E-value=0.29  Score=56.25  Aligned_cols=95  Identities=18%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCC--CHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFR--DWWWKVQLGKCYFSL----G---LIREAQQQFNSALNQFTDIEAFIRMIRVYIR  369 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~la~~~~~  369 (677)
                      ++....|+.|+..|++.....|..  .....+..|..+..+    |   .+++|+..|++.-....-+--|...|.+|.+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR  564 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH
Confidence            444688999999999999988733  344557778776643    3   4778888888765544467778899999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTI  393 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~  393 (677)
                      +|++++-++++.-+++..|.++..
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        565 LGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCcc
Confidence            999999999999999999988764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.91  E-value=0.05  Score=49.00  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHcCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHhhcCCCCcccch
Q psy16607        522 ALLFYRRLLQMGLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIITECSPFSFSTHT  597 (677)
Q Consensus       522 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~  597 (677)
                      ......+....++.+.   .....++..+...+++++|+..++.++....+... .-+-.+++.+..             
T Consensus        71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-------------  137 (207)
T COG2976          71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-------------  137 (207)
T ss_pred             hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-------------
Confidence            3333444444443332   23456788889999999999999999862222211 234567888887             


Q ss_pred             hhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        598 SYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       598 ~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                            ..|.+++|+..+....... -.+......|.++...|+.++|+..|+++++..++..
T Consensus       138 ------q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         138 ------QQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             ------HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence                  9999999998887654311 0123456689999999999999999999999875554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.87  E-value=0.025  Score=50.84  Aligned_cols=99  Identities=13%  Similarity=0.047  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      -+...++..+...+++++|+..++.++....+.   .-+-.+++.+....|++++|+..+...... .-........|.+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi  168 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence            344566777777777777777777766543321   123456777777777777777766653221 1122334456777


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCC
Q psy16607        435 HFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      +...|+-++|+..|.+++...+.
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCC
Confidence            77777777777777777776643

>KOG0551|consensus

Probab=96.86  E-value=0.0066  Score=58.79  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      ..+..-|.-|++.++|..|+..|.+++.  ....    +...|.+.+.+..                   ..|+|..|+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~-------------------~l~NyRs~l~  140 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQL-------------------YLGNYRSALN  140 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHH-------------------HHHHHHHHHH
Confidence            3445568888899999999999999987  3332    3456778888888                   8999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      ...+++.++|.+..+++.=+.|+..+.++++|..+.+..+.++-+.
T Consensus       141 Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  141 DCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999999999999999999888888888777665443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.79  E-value=0.12  Score=52.54  Aligned_cols=147  Identities=13%  Similarity=0.058  Sum_probs=88.0

Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607        380 GRNALDCYPNEVTIMTEMARIFEGLNN------------MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       380 ~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      +++.++.+|.+.++|..+.......-.            .+.-+..|++|++.+|++...+..+-....+..+.++..+.
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            444555556666655555544333221            34455667777777777777766666666666666666777


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhhccc----------------chHHHHHHHHHHHHHh
Q psy16607        448 YRRLLQMGLYNAELFNNLALCCFY---SQQYDMVVTCFERALSLALNE----------------NAADVWYNISHVAILN  508 (677)
Q Consensus       448 ~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~l~~~~~l~  508 (677)
                      +++++..+|.+..+|...-.....   .-.++.....|.+++..-...                ....+...+.....  
T Consensus        88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~--  165 (321)
T PF08424_consen   88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR--  165 (321)
T ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH--
Confidence            777777777777766655444333   234556666666555432110                11333444455554  


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        509 ALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       509 ~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                            ..|..+.|+..++..++.+-
T Consensus       166 ------~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  166 ------QAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             ------HCCchHHHHHHHHHHHHHHc
Confidence                  78999999999999887664

>KOG1308|consensus

Probab=96.69  E-value=0.002  Score=62.63  Aligned_cols=92  Identities=11%  Similarity=0.050  Sum_probs=65.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH
Q psy16607        364 IRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEV  443 (677)
Q Consensus       364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  443 (677)
                      +.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|+..+..++.++|+...-+-..+.....+|++++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            44445567777777777777777777777777777777777777777777777777777766666666666677777777


Q ss_pred             HHHHHHHHHHcC
Q psy16607        444 ALLFYRRLLQMG  455 (677)
Q Consensus       444 A~~~~~~al~~~  455 (677)
                      |...+..+.+++
T Consensus       201 aa~dl~~a~kld  212 (377)
T KOG1308|consen  201 AAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHhcc
Confidence            777777666654

>KOG3824|consensus

Probab=96.66  E-value=0.0064  Score=58.04  Aligned_cols=66  Identities=17%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      +.|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            899999999999999999999999999999999999999999999999999999999999887654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.64  E-value=0.065  Score=54.42  Aligned_cols=80  Identities=16%  Similarity=0.060  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh---ccC
Q psy16607        476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY---SQQ  552 (677)
Q Consensus       476 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~  552 (677)
                      +.-+.+|++|++.+|++  ...+..+-....        +..+.++..+.+++++..+|++...|...-.....   .-.
T Consensus        48 E~klsilerAL~~np~~--~~L~l~~l~~~~--------~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~  117 (321)
T PF08424_consen   48 ERKLSILERALKHNPDS--ERLLLGYLEEGE--------KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT  117 (321)
T ss_pred             HHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc
Confidence            44566778888887776  655555555554        56677777788888888888888887765544433   234


Q ss_pred             HHHHHHHHHHHHH
Q psy16607        553 YDMVVTCFERALS  565 (677)
Q Consensus       553 ~~~A~~~~~~al~  565 (677)
                      ++.....|.+++.
T Consensus       118 v~~~~~~y~~~l~  130 (321)
T PF08424_consen  118 VSDVRDVYEKCLR  130 (321)
T ss_pred             HHHHHHHHHHHHH
Confidence            6667777776665

>KOG1308|consensus

Probab=96.54  E-value=0.0013  Score=63.92  Aligned_cols=87  Identities=14%  Similarity=0.118  Sum_probs=49.6

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS  594 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~  594 (677)
                      ..|.++.|++.|..++.++|.....+...+.++.++++...|+..+..++.  ++|+...-+-..+....          
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~r----------  193 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAER----------  193 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHH----------
Confidence            445555666666666666665555555556666666666666666655555  55555544444444444          


Q ss_pred             cchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        595 THTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       595 ~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                               .+|++++|...+..+.+++
T Consensus       194 ---------llg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  194 ---------LLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             ---------HhhchHHHHHHHHHHHhcc
Confidence                     5555666655555555554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.52  E-value=0.0056  Score=38.13  Aligned_cols=33  Identities=21%  Similarity=0.126  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      ++++.+|.++.+.|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.45  E-value=0.0067  Score=38.81  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENA  572 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~  572 (677)
                      ++.+||.+|...|++++|+.+|++++.+..+|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            4788999999999999999999998875444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.40  E-value=0.0033  Score=40.25  Aligned_cols=29  Identities=31%  Similarity=0.430  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        628 SQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       628 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ++.+||.+|...|++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999966554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.35  E-value=2.4  Score=47.35  Aligned_cols=229  Identities=9%  Similarity=-0.021  Sum_probs=147.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT----------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-----VT  392 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~  392 (677)
                      ...+.......++.+|..+..++...-+          ........|.+....|++++|.+..+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            5677888888999999988888766332          23445567788888999999999999999887765     34


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcC----CHH--HHHHHHHHHHhCCChH--HHHHHHHHH----HHcCCCCHH
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDAT----CME--AIACIGVNHFYNDQPE--VALLFYRRL----LQMGLYNAE  460 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~--~~~~la~~~~~~g~~~--~A~~~~~~a----l~~~~~~~~  460 (677)
                      ++..+|.+..-.|++++|..+..++.+....    ...  +.+..+.++..+|+..  +....+...    +...|.+..
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            6778899999999999999999888877332    222  3344577888888432  222333222    223344434


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhh----cccc-hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLA----LNEN-AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY  535 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~-~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~  535 (677)
                      .....+.++...-+++.+.......++..    |.+. ..-+.+.++.+..        ..|++++|...+.+.......
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~--------~~Gdl~~A~~~l~~~~~l~~~  650 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF--------LRGDLDKALAQLDELERLLLN  650 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHhcC
Confidence            44444444444444677666666665543    2220 1112235666665        899999999999887754322


Q ss_pred             c-----HH--HHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        536 N-----AE--LFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       536 ~-----~~--~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                      .     ..  ++..........|+.++|.....+..
T Consensus       651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            2     11  11222333456788888888877754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.33  E-value=0.0091  Score=37.52  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45667777777777777777777777776663

...

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.18  E-value=0.2  Score=51.50  Aligned_cols=94  Identities=15%  Similarity=0.084  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC-----CcHH
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL-----YNAE  538 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p-----~~~~  538 (677)
                      .....+.+.|-+..|.++.+-.+.++|...-..+.+.+-....        +.++++--++.++.......     .-|.
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL--------rs~~y~~Li~~~~~~~~~~~~~~~~~lPn  179 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL--------RSRQYQWLIDFSESPLAKCYRNWLSLLPN  179 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH--------hcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence            3344455555555555555555555555211223333333333        45555555555554433111     1234


Q ss_pred             HHHHHHHHHHhccCH---------------HHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQY---------------DMVVTCFERALS  565 (677)
Q Consensus       539 ~~~~la~~~~~~g~~---------------~~A~~~~~~al~  565 (677)
                      ..+..+.++...++-               ++|...+.+|+.
T Consensus       180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~  221 (360)
T PF04910_consen  180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL  221 (360)
T ss_pred             HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence            556666777777666               788888888887

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.17  E-value=0.25  Score=50.75  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=97.3

Q ss_pred             ccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------C------------CCcHH---HHHHHHHHH
Q psy16607        352 NQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--------------Y------------PNEVT---IMTEMARIF  401 (677)
Q Consensus       352 ~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~~~---~~~~la~~~  401 (677)
                      +..| +++++..++.++..+|+...|.+.+++++-.              +            +.|..   +++.....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            4455 6666666666666666666666666655421              1            22222   455667788


Q ss_pred             HHcCChhHHHHHHHHHHHhCcC-CHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHcCC
Q psy16607        402 EGLNNMPMSVKYYKLILKRDAT-CMEA-IACIGVNHFYNDQPEVALLFYRRLLQMGL-----YNAELFNNLALCCFYSQQ  474 (677)
Q Consensus       402 ~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~  474 (677)
                      .+.|-+..|+++.+-.+.++|. ++-. .+.+=....+.++++--++.++.......     .-|...+..+.++...++
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~  193 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK  193 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence            8899999999999999999998 6544 34444455667888877887777655211     134567788888888888


Q ss_pred             H---------------HHHHHHHHHHHhhhcc
Q psy16607        475 Y---------------DMVVTCFERALSLALN  491 (677)
Q Consensus       475 ~---------------~~A~~~~~~al~~~p~  491 (677)
                      -               +.|...+.+|+...|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  194 EESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             ccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            8               8999999999998765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.07  E-value=0.1  Score=45.88  Aligned_cols=72  Identities=13%  Similarity=-0.037  Sum_probs=67.7

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      ..++.+++...+...--+.|..++.-..-|.++...|++.+|+.+|+.+.+-.|..+-+.-.++.|++.+|+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            888999999999999999999999999999999999999999999999999999999888899999998886

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.02  E-value=2  Score=44.02  Aligned_cols=241  Identities=8%  Similarity=0.021  Sum_probs=131.6

Q ss_pred             HHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC
Q psy16607        346 QFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC  424 (677)
Q Consensus       346 ~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  424 (677)
                      .+++++.-.+ .+++|+.........++-+.|+...++++...|.   ....++..|...++-+....+|+++...-.  
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~--  364 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK--  364 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence            4555555555 5667777777677777777777777776666554   445556666666665555555655443100  


Q ss_pred             HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607        425 MEAIACIGVNHFY---NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  501 (677)
Q Consensus       425 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  501 (677)
                        .-+..+..-..   -|+++...+++-+-..   .-.-+|+..-..-.+..-.+.|...|-++-+..-..  ..++...
T Consensus       365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~--h~vyi~~  437 (660)
T COG5107         365 --RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG--HHVYIYC  437 (660)
T ss_pred             --HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC--cceeeeH
Confidence              00000100000   1222222222111111   223344444444455555677777777765543111  2222222


Q ss_pred             HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607        502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  581 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~  581 (677)
                      +.+-       +...|++.-|...|+-.+...|+++......-..+...++-+.|..+|++++....+..-..+|-.+-.
T Consensus       438 A~~E-------~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~  510 (660)
T COG5107         438 AFIE-------YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIE  510 (660)
T ss_pred             HHHH-------HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHH
Confidence            2221       126788888888888888888888887777778888888888899999888763222222333433333


Q ss_pred             HHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       582 ~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                      .-.                   .-|+...+...=++..+..|.
T Consensus       511 YEs-------------------~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         511 YES-------------------MVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHH-------------------hhcchHHHHhHHHHHHHHcCc
Confidence            333                   556666655555555555443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.97  E-value=0.071  Score=54.31  Aligned_cols=123  Identities=16%  Similarity=0.022  Sum_probs=75.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  449 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  449 (677)
                      .|+...|-+-...++...|.++......+.+...+|.|+.+...+..+-..-.....+...+-......|++++|.....
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~  381 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE  381 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence            45666666666666666666666666666666666666666666655444433334444455555666666666666666


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       450 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      -.+...-+++++...-+.....+|-++++...+++.+.++|..
T Consensus       382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            6666655566655555555556666666776777666666543

>PRK10941 hypothetical protein; Provisional

Probab=95.93  E-value=0.088  Score=51.38  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=61.8

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                      +.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..-...+.
T Consensus       193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998766544443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.89  E-value=0.014  Score=36.28  Aligned_cols=29  Identities=28%  Similarity=0.475  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYP  388 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  388 (677)
                      ++.+|.++...|++++|+..|+++++..|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            44444444444444444444444444444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.75  E-value=0.17  Score=44.45  Aligned_cols=81  Identities=12%  Similarity=0.039  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      +..+..+-...++.+++...+..+--+.|..+++-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+...|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            34444444445555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             C
Q psy16607        440 Q  440 (677)
Q Consensus       440 ~  440 (677)
                      +
T Consensus        93 D   93 (160)
T PF09613_consen   93 D   93 (160)
T ss_pred             C
Confidence            4

>KOG1538|consensus

Probab=95.53  E-value=2.1  Score=45.80  Aligned_cols=89  Identities=9%  Similarity=0.046  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      +....+.+...+..+.....+.-|.+.|.+.-..          ..+...+.        ..+++.+|....++.-+.- 
T Consensus       743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHv--------e~~~W~eAFalAe~hPe~~-  803 (1081)
T KOG1538|consen  743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHV--------ETQRWDEAFALAEKHPEFK-  803 (1081)
T ss_pred             chhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhhee--------ecccchHhHhhhhhCcccc-
Confidence            3344455555566666666666666666554221          12222333        6677777766555433222 


Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        535 YNAELFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                        +..++-.|.-+....+|++|.+.|.+|-
T Consensus       804 --~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  804 --DDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             --ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence              2355566666666666666666665553

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.52  E-value=0.1  Score=42.47  Aligned_cols=44  Identities=11%  Similarity=-0.003  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       410 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      ++++|.++..+.|..+..++.+|.-+-....|++++.-.++++.
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            44555555555555555555555544444445555555544444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.48  E-value=3.6  Score=47.61  Aligned_cols=97  Identities=15%  Similarity=0.083  Sum_probs=77.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRL----D---QPIRAIDIGRNALDCYPNEVTIMTEM  397 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l  397 (677)
                      ....++...+.|+.|+..|++.....|    .-++.+..|......    |   .+++|+..|++.. -.|.-+--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            345677788899999999999999888    457888888877653    2   4677777777643 345566778899


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhCcCCHH
Q psy16607        398 ARIFEGLNNMPMSVKYYKLILKRDATCME  426 (677)
Q Consensus       398 a~~~~~~g~~~~A~~~~~~al~~~p~~~~  426 (677)
                      |.+|..+|++++-+++|.-+++..|.++.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999887643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.43  E-value=0.39  Score=39.46  Aligned_cols=27  Identities=11%  Similarity=-0.075  Sum_probs=20.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSL  566 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~  566 (677)
                      .++.+..+...|+.++|+..|+.+.++
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            456778888888888888888887763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.42  E-value=0.029  Score=34.09  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      .++..+|.++...|++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3783|consensus

Probab=95.31  E-value=1.5  Score=46.01  Aligned_cols=236  Identities=11%  Similarity=-0.042  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16607        306 ASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT---DIEAFIRMIRVYIRLDQPIRAIDIGRN  382 (677)
Q Consensus       306 ~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~  382 (677)
                      +...+.+.......|++ ..|.+..+..+...|+.+.|+..++..+...-   ..-.++.++.++.-+.+|.+|-..+..
T Consensus       250 ~~~~~~Ll~~~~~~p~g-a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~  328 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKG-ALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL  328 (546)
T ss_pred             HHHHHHhHHHHHhCCCC-ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            44455555555666544 44557888888888888889999998888211   455678889999999999999999999


Q ss_pred             HHHcCCCcHHHHHHHH-HHHHH--------cCChhHHHHHHHHH---HHhCcCCHHH---HHHHHHHHHhCCChHHHHHH
Q psy16607        383 ALDCYPNEVTIMTEMA-RIFEG--------LNNMPMSVKYYKLI---LKRDATCMEA---IACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       383 al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~  447 (677)
                      ..+........|..++ .++..        .|+-++|-.+++..   +...|++...   ....+.-+...+.       
T Consensus       329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------  401 (546)
T KOG3783|consen  329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------  401 (546)
T ss_pred             HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------
Confidence            9888776666666555 33321        23444444443332   2222322111   1111111111110       


Q ss_pred             HHHHHHcCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHH---hh-hcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607        448 YRRLLQMGLYNAE--LFNNLALCCFY--SQQYDMVVTCFERAL---SL-ALNENAADVWYNISHVAILNALSTSVYNDQP  519 (677)
Q Consensus       448 ~~~al~~~~~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~  519 (677)
                            .++..+.  .++.++.++..  ....++.. -++..+   .. ++++ ..-.+..+|.++.        ..|+.
T Consensus       402 ------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd-~~lk~lL~g~~lR--------~Lg~~  465 (546)
T KOG3783|consen  402 ------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDD-EGLKYLLKGVILR--------NLGDS  465 (546)
T ss_pred             ------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchH-HHHHHHHHHHHHH--------HcCCH
Confidence                  0111111  11222222111  11112222 111111   11 2221 2334456677776        78899


Q ss_pred             HHHHHHHHHHHHcC------C-CcHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy16607        520 EVALLFYRRLLQMG------L-YNAELFNNLALCCFYSQQ-YDMVVTCFERALS  565 (677)
Q Consensus       520 ~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~  565 (677)
                      ..|..+|...++..      + -.|.+++.+|..+...+. ..++..++.+|-+
T Consensus       466 ~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~  519 (546)
T KOG3783|consen  466 EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE  519 (546)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence            99999998887321      1 136789999999999999 9999999999987

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.30  E-value=0.94  Score=37.30  Aligned_cols=26  Identities=23%  Similarity=0.061  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        629 QNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       629 ~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      .++.+..+...|+.++|+..|+.+-+
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            35667777778888888888877755

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.27  E-value=0.1  Score=41.53  Aligned_cols=65  Identities=18%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCC
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLVSV  675 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~G~  675 (677)
                      .+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567888999999999999999999999999999999999999998876  5677777777766664

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.56  Score=49.59  Aligned_cols=136  Identities=13%  Similarity=-0.023  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNN--LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS  594 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~  594 (677)
                      +...-++..+...+..++.++..+..  +...+...+....+...+...+.  .+|++..+..+++....          
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~L~~ale----------  112 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLS--VNPENCPAVQNLAAALE----------  112 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHh--cCcccchHHHHHHHHHH----------
Confidence            44444677777777788888876443  47777888888889989999998  89999999999999887          


Q ss_pred             cchhhhHHhcCCCHHHHHHHHHH-HHccCCCChHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        595 THTSYLFIQGISDTRLAIQCLHL-ALSIDSSHGLSQNNL------AVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       595 ~~~~~~~l~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                               ..|....+...+.. +....|++......+      +.....+|+..++....+++.++.|.++...-.+.
T Consensus       113 ---------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~  183 (620)
T COG3914         113 ---------LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM  183 (620)
T ss_pred             ---------HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence                     66666665555554 888888887766555      88889999999999999999999999987776666


Q ss_pred             HHHHhc
Q psy16607        668 VISNLV  673 (677)
Q Consensus       668 ~~~~~~  673 (677)
                      ......
T Consensus       184 ~~r~~~  189 (620)
T COG3914         184 TARQEQ  189 (620)
T ss_pred             HHHHHh
Confidence            554443

>KOG2396|consensus

Probab=95.19  E-value=4.8  Score=42.04  Aligned_cols=94  Identities=13%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC-hHHHHHHHHH
Q psy16607        305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ-PIRAIDIGRN  382 (677)
Q Consensus       305 ~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~  382 (677)
                      ...-..+|+.++...+.+...| ........+.+.+.+-...|.+++...| +++.|..-|.-.+..+. .+.|...+.+
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW-~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLW-LSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            3456778888888875545555 4555555556668888899999999988 88888888887777766 8888999999


Q ss_pred             HHHcCCCcHHHHHHHHH
Q psy16607        383 ALDCYPNEVTIMTEMAR  399 (677)
Q Consensus       383 al~~~p~~~~~~~~la~  399 (677)
                      +++.+|+++..|...-.
T Consensus       166 gLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  166 GLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HhhcCCCChHHHHHHHH
Confidence            99999999888765443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.11  E-value=0.23  Score=39.52  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=19.8

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607        379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA  422 (677)
Q Consensus       379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  422 (677)
                      .+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.++
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            34444444444444444455444444555555444444444443

>KOG1464|consensus

Probab=95.10  E-value=1.8  Score=41.19  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=119.0

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHcC
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWW---KVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMIRVYIRLD  371 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g  371 (677)
                      ..++++|+..|+++++..+....|-   +-.+..+.+++|+|++-...|.+++.--.       .......+-..-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            4689999999999999986554442   23466789999999999999998875211       2222222222222223


Q ss_pred             ChHHHHHHHHHHHHc--CCCcHHHH----HHHHHHHHHcCChhHHHHHHHHHHHhCcC------------CHHHHHHHHH
Q psy16607        372 QPIRAIDIGRNALDC--YPNEVTIM----TEMARIFEGLNNMPMSVKYYKLILKRDAT------------CMEAIACIGV  433 (677)
Q Consensus       372 ~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~  433 (677)
                      +.+--...|+..++.  +..+...|    ..+|.+|+..++|.+-.+.+++.-.....            -.+.+..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            333333444433321  11222333    46899999999888877777665433211            1344555567


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLY--NAELFN----NLALCCFYSQQYDMVVTCFERALSLAL  490 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p  490 (677)
                      +|..+.+..+-..+|++++.+...  +|.+.-    .=|..+.+.|++++|-.-|-.|++...
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD  262 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD  262 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence            777888888888889998876432  333322    235678888999999988888877543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.10  E-value=0.88  Score=40.29  Aligned_cols=132  Identities=11%  Similarity=-0.022  Sum_probs=77.6

Q ss_pred             ccCHHHHHHHHHHHHhhCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHcCChHH
Q psy16607        302 ENDVASAMDLAVESTKACEF-RDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD-----IEAFIRMIRVYIRLDQPIR  375 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~  375 (677)
                      .+..++|+..|....+..-. -.....+..+.+....|+-..|+..|.++-...+.     .-+...-+.++...|-|++
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d  150 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD  150 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence            56777777777766654321 12233455666777777777777777777665441     2344555666666777776


Q ss_pred             HHHHHHHHH-HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        376 AIDIGRNAL-DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       376 A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      .....+.+- ..+|-...+.-.||....+.|++.+|..+|.+... +...+....+.+.+
T Consensus       151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            665555432 23344445556677777777777777777777654 33334444444443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.95  E-value=5.3  Score=41.30  Aligned_cols=47  Identities=15%  Similarity=0.099  Sum_probs=34.1

Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      -+.+.++.+-.+..++.++..-+.-...+.+|.+|+.++++.-+.+.
T Consensus       761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  807 (831)
T PRK15180        761 HLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNG  807 (831)
T ss_pred             hHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccC
Confidence            34455666667777776666556666677899999999999887763

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.91  E-value=0.049  Score=50.13  Aligned_cols=59  Identities=14%  Similarity=0.119  Sum_probs=56.0

Q ss_pred             hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      .+.++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|++..
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            38899999999999999999999999999999999999999999999999999998753

>KOG2041|consensus

Probab=94.90  E-value=7  Score=42.43  Aligned_cols=26  Identities=12%  Similarity=0.008  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRN  382 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~  382 (677)
                      ..++..+|..+..+..+++|.++|..
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666666666666666666554

>KOG3824|consensus

Probab=94.86  E-value=0.097  Score=50.30  Aligned_cols=68  Identities=18%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16607        331 GKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA  398 (677)
Q Consensus       331 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  398 (677)
                      +.-..+.|+.++|..+|+.++...| +++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3334445555555555555555555 5555555555555555555555555555555555555554444

>KOG2581|consensus

Probab=94.79  E-value=2.4  Score=42.85  Aligned_cols=121  Identities=15%  Similarity=0.029  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      ..|+.+..++...|+...-...+..-+..+.-.    ......+.+-..|.                   ..+.|+.|-.
T Consensus       170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL-------------------~n~lydqa~~  230 (493)
T KOG2581|consen  170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYL-------------------HNKLYDQADK  230 (493)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHh-------------------hhHHHHHHHH
Confidence            445666666666666555555555444422111    12233444555665                   7888888888


Q ss_pred             HHHHHHcc--CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHhcCCCC
Q psy16607        614 CLHLALSI--DSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET------HYNQAVISNLVSVIP  677 (677)
Q Consensus       614 ~~~~al~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~G~ip  677 (677)
                      ...+..--  ..+  .+..++.+|.+..-+++|..|.++|-+|+...|++...      ...+-.+...+|+||
T Consensus       231 lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiP  304 (493)
T KOG2581|consen  231 LVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIP  304 (493)
T ss_pred             HhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCc
Confidence            77776421  112  23456788999999999999999999999999986432      233445567789998

>KOG3783|consensus

Probab=94.78  E-value=6.6  Score=41.53  Aligned_cols=243  Identities=12%  Similarity=0.057  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC--CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRL  451 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a  451 (677)
                      ....+.+....+..|+++-.....+..+...|+.+.|+..++..+...-.  ..-.++.++.++..+.+|..|...+...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34444555556677888888888888888888877777877777661111  1234556677777777888888888877


Q ss_pred             HHcCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---hhcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607        452 LQMGLYNAELFNNLA-LCCFY--------SQQYDMVVTCFERALS---LALNENAADVWYNISHVAILNALSTSVYNDQP  519 (677)
Q Consensus       452 l~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~  519 (677)
                      .+...=+.-.|..++ .|+..        .|+-++|..+++....   ..|.+.-.+.+ .                  .
T Consensus       330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-~------------------~  390 (546)
T KOG3783|consen  330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-I------------------V  390 (546)
T ss_pred             HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-H------------------H
Confidence            766543333333333 33321        2233444333333221   11111000000 0                  0


Q ss_pred             HHHHHHHHHHHHcCC---CcHHH--HHHHHHHHH--hccCHHHHHHHHHHHHHHh-h-ccchH-HHHHHHHHHHHHhhcC
Q psy16607        520 EVALLFYRRLLQMGL---YNAEL--FNNLALCCF--YSQQYDMVVTCFERALSLA-L-NENAA-DVWYNISHVAIITECS  589 (677)
Q Consensus       520 ~~A~~~~~~al~~~p---~~~~~--~~~la~~~~--~~g~~~~A~~~~~~al~~~-~-~p~~~-~~~~~l~~~~~~~~~~  589 (677)
                      .++.    +.....|   ....+  ++.++..+-  .....++.. -++...+.. . ++++. -.+..+|.++.     
T Consensus       391 RKve----rf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR-----  460 (546)
T KOG3783|consen  391 RKVE----RFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILR-----  460 (546)
T ss_pred             HHHH----HHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHH-----
Confidence            1111    1111111   11111  112221111  111222222 112222110 1 22222 23556677777     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHcc---CCC----ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSI---DSS----HGLSQNNLAVLEAREGH-IERASTYLQAAAASSPYL  659 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  659 (677)
                                    .+|+...|..+|+.+++.   ...    .|.+++.+|.++..+|. ..++.+++.+|-+...++
T Consensus       461 --------------~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  461 --------------NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             --------------HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence                          999999999999988842   111    26789999999999998 999999999998877554

>PRK10941 hypothetical protein; Provisional

Probab=94.76  E-value=0.35  Score=47.26  Aligned_cols=68  Identities=9%  Similarity=0.038  Sum_probs=43.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI  428 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  428 (677)
                      .++-.+|.+.++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            34445556666666666666666666666666666666666666666666666666666666655443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.68  E-value=0.41  Score=41.34  Aligned_cols=72  Identities=14%  Similarity=-0.082  Sum_probs=64.9

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      ..++.+++...+...--+.|+.++.-..-|.++...|++.+|+..|+...+-.+..+-..-.++.|++.+|+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            688899999999888889999999999999999999999999999999988888888888888999998886

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1464|consensus

Probab=94.57  E-value=4.4  Score=38.64  Aligned_cols=192  Identities=14%  Similarity=0.085  Sum_probs=114.8

Q ss_pred             cCCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CcHH-HHHHHHHHHHHcC
Q psy16607        337 LGLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP-----NEVT-IMTEMARIFEGLN  405 (677)
Q Consensus       337 ~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~-~~~~la~~~~~~g  405 (677)
                      ....++|+..|+++++..+     ...++-.+..++++++++++-...|.+.+..-.     +..+ ....+-..-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            4578999999999999876     346788899999999999999999888764321     1111 1111111111222


Q ss_pred             ChhHHHHHHHHHHHh--CcCCHHHH----HHHHHHHHhCCChHHHHHHHHHHHHcCC------------CCHHHHHHHHH
Q psy16607        406 NMPMSVKYYKLILKR--DATCMEAI----ACIGVNHFYNDQPEVALLFYRRLLQMGL------------YNAELFNNLAL  467 (677)
Q Consensus       406 ~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~------------~~~~~~~~la~  467 (677)
                      +.+--.++|+..+..  +..+...|    ..+|.+|+..+.|.+-.+++++.-....            .-.+++..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            333333344433322  12233333    4688899988888877777666543211            11245555567


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607        468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM  532 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~  532 (677)
                      +|....+-.+-...|++++.+...-..+.   .+|.+.. |...-+++.|++++|-..|-++++.
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl---ImGvIRE-CGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPL---IMGVIRE-CGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchH---HHhHHHH-cCCccccccchHHHHHhHHHHHHhc
Confidence            78888888888888888887643211121   2333321 2223345778888888877777754

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.55  E-value=1.6  Score=37.80  Aligned_cols=81  Identities=11%  Similarity=0.019  Sum_probs=51.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ  440 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  440 (677)
                      ......-...++++++...+..+--+.|+.+++-..-|.++...|+|.+|+..|+...+..+..+-..-.++.|+..+|+
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33344444466666676666666666677766666667777777777777777776666555555555555666665555


Q ss_pred             h
Q psy16607        441 P  441 (677)
Q Consensus       441 ~  441 (677)
                      .
T Consensus        94 p   94 (153)
T TIGR02561        94 A   94 (153)
T ss_pred             h
Confidence            3

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.35  E-value=0.81  Score=43.21  Aligned_cols=42  Identities=14%  Similarity=0.071  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAV  668 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~  668 (677)
                      .+.+.+|.+..+.|++++|..+|.+++...-.+. ....++|.
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            4566677777777777777777777776443222 24444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.35  E-value=7.9  Score=40.58  Aligned_cols=73  Identities=15%  Similarity=0.051  Sum_probs=35.5

Q ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       412 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      ....+++.... +-.+++.++.+|... ..++-..++++.++.+-++...-..++..|.+ ++-..+..+|.+++.
T Consensus        87 h~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y  159 (711)
T COG1747          87 HLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence            33344443332 334455555555554 33444455555555554444444445544444 555555555555544

>KOG3364|consensus

Probab=94.32  E-value=0.77  Score=38.81  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHc-cCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607        325 WWKVQLGKCYFSLG---LIREAQQQFNSALN-QFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEM  397 (677)
Q Consensus       325 ~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  397 (677)
                      ...++++.++.+..   +..+.+.+++..++ ..|  ..+..+.++..+++.++|+.++.+.+..++..|++..+....
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            34477888887764   45677888888886 444  667888888888899999999999999988888887765443

>KOG4014|consensus

Probab=94.24  E-value=3.9  Score=36.64  Aligned_cols=185  Identities=11%  Similarity=0.010  Sum_probs=102.8

Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        458 NAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       458 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      .|+....+|..+.- ..++++|...|+.-..-+.   .+...+.+|..+.+...+   ..+++..|++.|..+-.  .+.
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~---y~kSCyKyG~y~~~GKgG---~~~~l~~a~r~~~~aC~--~n~  104 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS---YPKSCYKYGMYMLAGKGG---DDASLSKAIRPMKIACD--ANI  104 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---CcHHHHHhhhhhhcccCC---CccCHHHHHHHHHHHhc--cCC
Confidence            45555555555443 3456666666655433322   255556666555422221   34456667777666654  345


Q ss_pred             HHHHHHHHHHHHhc-----c--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-----CCCCcccchhhhHHhc
Q psy16607        537 AELFNNLALCCFYS-----Q--QYDMVVTCFERALSLALNENAADVWYNISHVAIITEC-----SPFSFSTHTSYLFIQG  604 (677)
Q Consensus       537 ~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~-----~p~~~~~~~~~~~l~~  604 (677)
                      +.+...+|.++..-     +  +.++|..++.++-.    -++..+-++|...++.-..     .|.....-.......-
T Consensus       105 ~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd----l~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~  180 (248)
T KOG4014|consen  105 PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD----LEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL  180 (248)
T ss_pred             HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc----CCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence            55666666665532     1  24667777777654    3445555555555542211     2211111111112335


Q ss_pred             CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q psy16607        605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE----GHIERASTYLQAAAASS  656 (677)
Q Consensus       605 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~  656 (677)
                      ..+.+.|.++--++-++.  ++.+..++...|..-    ++.++|..+-.+|.++.
T Consensus       181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            567889999988888774  567777777776542    46788888888877653

>KOG3364|consensus

Probab=94.02  E-value=0.94  Score=38.32  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607        537 AELFNNLALCCFYSQQ---YDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI  612 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~  612 (677)
                      ....+++++++....+   ..+.+.+++..++. ..| ...+..+.++..+.                   +.++|++++
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~y-------------------RlkeY~~s~   91 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHY-------------------RLKEYSKSL   91 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHH-------------------HHhhHHHHH
Confidence            3455666666665443   34455566655541 222 23344555555554                   666666666


Q ss_pred             HHHHHHHccCCCChHHHH
Q psy16607        613 QCLHLALSIDSSHGLSQN  630 (677)
Q Consensus       613 ~~~~~al~~~p~~~~~~~  630 (677)
                      .+.+..++..|++..+..
T Consensus        92 ~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   92 RYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHhhCCCcHHHHH
Confidence            666666666666555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.96  E-value=0.48  Score=38.72  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=67.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        363 MIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      ++.-++..|++-+|+++.+..+...+++..   .+...|.++..            .+...+..+....+.+        
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yLl--------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYLL--------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHHH--------
Confidence            355667777777777777777777665553   33344444432            2223322233333333        


Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  488 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  488 (677)
                         .+++.|.++..+.|..+..++.+|.-+-....|++++.-.++++..
T Consensus        62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               3678899999999999888888888777777777777777777654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.93  E-value=1.4  Score=40.16  Aligned_cols=61  Identities=13%  Similarity=0.128  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---EVTIMTEMARIFEGLNNMPMSVKYYKLIL  418 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al  418 (677)
                      .++..+|..|.+.|+.++|++.|.++.+....   ..+.+..+..+....+++.....+..++-
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34455555555555555555555555443321   12344445555555555555555555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.90  E-value=13  Score=41.58  Aligned_cols=248  Identities=13%  Similarity=-0.003  Sum_probs=122.5

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607        369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY  448 (677)
Q Consensus       369 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  448 (677)
                      +.+++..-+.++    ...|.+.......+......|+.++|....+++.......+.....+-..+...|........-
T Consensus       111 ~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~  186 (644)
T PRK11619        111 RREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLE  186 (644)
T ss_pred             HccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHH
Confidence            455666555532    2236777777777788888888887877777766555444444444444444334333222111


Q ss_pred             HHHHHcCCCCHHHHHHHHHHH-----------H-HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607        449 RRLLQMGLYNAELFNNLALCC-----------F-YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN  516 (677)
Q Consensus       449 ~~al~~~~~~~~~~~~la~~~-----------~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~  516 (677)
                      +--+.+...+......+...+           . -..+...+...+.    ..+.+........++....        ..
T Consensus       187 R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~l~Rl--------ar  254 (644)
T PRK11619        187 RIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR----TTGPTDFTRQMAAVAFASV--------AR  254 (644)
T ss_pred             HHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccCCChhhHHHHHHHHHHH--------HH
Confidence            111111111221111111111           0 0111111111111    1111100111112222222        44


Q ss_pred             CCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607        517 DQPEVALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                      .+.+.|...+.+......-+.    .++..+|.-....+...+|..++..+...   ..+...+........        
T Consensus       255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al--------  323 (644)
T PRK11619        255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMAL--------  323 (644)
T ss_pred             hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHH--------
Confidence            666777777776544433222    23334444444433356677777665531   112222222222222        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                                 ..++++.....+...-..........+.+|..+...|+.++|...|+++..
T Consensus       324 -----------~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        324 -----------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             -----------HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence                       788888887777775443445667889999998889999999999999854

>KOG0128|consensus

Probab=93.89  E-value=13  Score=41.42  Aligned_cols=328  Identities=12%  Similarity=0.080  Sum_probs=178.5

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHccCCCHHHHHHHHHHH-------HH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLG-KCYFS-LGLIREAQQQFNSALNQFTDIEAFIRMIRVY-------IR  369 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~-------~~  369 (677)
                      +...|++++-...-.++.+..|.+.+.|+..+- ..++. .+...++...|++++.....+..|...+...       ..
T Consensus       123 lrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~  202 (881)
T KOG0128|consen  123 LRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKK  202 (881)
T ss_pred             HHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHHHHhccccccc
Confidence            455688888777777777777766666654333 22222 3778889999999998665444444444433       44


Q ss_pred             cCChHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHH----HHHHHH--H-HH
Q psy16607        370 LDQPIRAIDIGRNALDCYPN-------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCME----AIACIG--V-NH  435 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la--~-~~  435 (677)
                      .++++.-...|.+++..-..       ....+...-..|...-..++-+.++.+.+... -+..    .|....  . ..
T Consensus       203 ~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~  281 (881)
T KOG0128|consen  203 SEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYD  281 (881)
T ss_pred             cccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHH
Confidence            46677888888888764321       23345555556666655677777777776654 2211    111111  1 11


Q ss_pred             HhCCChHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Q psy16607        436 FYNDQPEVALLF-------YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN  508 (677)
Q Consensus       436 ~~~g~~~~A~~~-------~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~  508 (677)
                      ....+++.|..-       +++.++..+.....|..+-......|++-.-...+++++...+.+  ...|...+...-  
T Consensus       282 ~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~--~~~wi~y~~~~d--  357 (881)
T KOG0128|consen  282 VETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD--RALWIGYGVYLD--  357 (881)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc--HHHHhhhhhhcc--
Confidence            222344444443       333444444445566677777777888877777888887766665  666666665432  


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-------------------------------------
Q psy16607        509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-------------------------------------  551 (677)
Q Consensus       509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-------------------------------------  551 (677)
                           ..++-.+.+...+-+++...|.....|...-..+.+.+                                     
T Consensus       358 -----~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s  432 (881)
T KOG0128|consen  358 -----TELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDS  432 (881)
T ss_pred             -----cccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence                 12233333333344444433333332222111111111                                     


Q ss_pred             -CH-------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607        552 -QY-------DMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS  623 (677)
Q Consensus       552 -~~-------~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p  623 (677)
                       ++       ..|...|..-.....++ ....+...+.+.                  +..+++.+.+...++..+...-
T Consensus       433 ~~~s~lr~~F~~A~~eLt~~~~~~~Dt-~~~~~q~wA~~E------------------~sl~~nmd~~R~iWn~imty~~  493 (881)
T KOG0128|consen  433 QDYSSLRAAFNHAWEELTELYGDQLDT-RTEVLQLWAQVE------------------ASLLKNMDKAREIWNFIMTYGG  493 (881)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHH------------------HHHhhchhhhhHhhhccccCCc
Confidence             11       22222222222100000 011111222221                  1256778888888887776655


Q ss_pred             CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        624 SHGL-SQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       624 ~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      .+.. .|.....+-...|+...++.++++|+..
T Consensus       494 ~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  494 GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            5444 6777777778889999999888888764

>smart00028 TPR Tetratricopeptide repeats

Probab=93.56  E-value=0.11  Score=31.28  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      ++..+|.++...|++++|+..++++++..|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666665543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1538|consensus

Probab=93.53  E-value=1.2  Score=47.48  Aligned_cols=84  Identities=8%  Similarity=0.100  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  470 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  470 (677)
                      .+.+..++..+.....+.-|.+.|.+.-..        ..+..++...+++.+|..+.++.-+.   -+.+++-.|+-+.
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLA  815 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLA  815 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhh
Confidence            334444444444444444454444443111        12334455556666666555543222   2345566666666


Q ss_pred             HcCCHHHHHHHHHHH
Q psy16607        471 YSQQYDMVVTCFERA  485 (677)
Q Consensus       471 ~~g~~~~A~~~~~~a  485 (677)
                      +..++++|.+.|.++
T Consensus       816 E~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  816 ENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hhhhHHHHHHHHHHh
Confidence            666666666666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.49  E-value=1.1  Score=41.02  Aligned_cols=100  Identities=13%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      .++..+|..|.+.|++++|++.|.++......+.+ .+.+..+..+..                   ..+++.....+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-------------------~~~d~~~v~~~i~   97 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-------------------FFGDWSHVEKYIE   97 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-------------------HhCCHHHHHHHHH
Confidence            56788999999999999999999998874434433 466777777777                   8999999999998


Q ss_pred             HHHccCCC--ChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        617 LALSIDSS--HGLS----QNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       617 ~al~~~p~--~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ++-.....  +.+.    ...-|..+...++|.+|...|-.+..-.
T Consensus        98 ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   98 KAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            88765332  2222    2334666778899999999987776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.46  E-value=3.7  Score=43.70  Aligned_cols=126  Identities=12%  Similarity=0.015  Sum_probs=82.7

Q ss_pred             HHHHHHHHHccCC-CHHHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHH-HH
Q psy16607        343 AQQQFNSALNQFT-DIEAFIR--MIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKL-IL  418 (677)
Q Consensus       343 A~~~~~~al~~~p-~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  418 (677)
                      ++..+...+..++ +...+..  +...+...+....+.-.....+..+|++..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5555555555555 4444322  455666667777777777778888888888888887777777666666555544 66


Q ss_pred             HhCcCCHHHHHHH------HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607        419 KRDATCMEAIACI------GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  468 (677)
Q Consensus       419 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  468 (677)
                      ...|.+......+      +......|+..++.....++....|.++.+...+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            7777776655544      6666667777777777777777777776555444444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.38  E-value=5.5  Score=35.49  Aligned_cols=121  Identities=10%  Similarity=0.012  Sum_probs=81.8

Q ss_pred             hCCChHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchH--HHHHHHHHHHHHhhhcc
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA--DVWYNISHVAILNALST  512 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~l~~~~~l~~l~~  512 (677)
                      ..+..++|+.-|..+-+..-..  .-+....+.+....|+...|+..|..+-.-.+.+...  -+...-+..++      
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv------  143 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV------  143 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh------
Confidence            4566777777777766654332  3455667788888888888888888876665553111  22233334444      


Q ss_pred             cccCCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        513 SVYNDQPEVALLFYRRLL-QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                        ..|-|++-....+.+- ..+|....+.-.||..-++.|++.+|.+.|.+...
T Consensus       144 --D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         144 --DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             --ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence              6777777666555443 44566667777889999999999999999998876

>KOG2422|consensus

Probab=93.25  E-value=8.7  Score=40.90  Aligned_cols=94  Identities=13%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HhhhcccchHHHHHHHH
Q psy16607        430 CIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCC-FYSQQYDMVVTCFERA-----LSLALNENAADVWYNIS  502 (677)
Q Consensus       430 ~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~~~l~  502 (677)
                      .....+.+.|-+..|.++++-.++++|. +|.....+..+| .+..+|.--+..++..     +..-|+   ...-..++
T Consensus       347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS~AlA  423 (665)
T KOG2422|consen  347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYSLALA  423 (665)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHHHHHH
Confidence            3344556678888888888888888887 666555555444 3455666666665544     222233   12222333


Q ss_pred             HHHHHhhhcccccCC---CHHHHHHHHHHHHHcCC
Q psy16607        503 HVAILNALSTSVYND---QPEVALLFYRRLLQMGL  534 (677)
Q Consensus       503 ~~~~l~~l~~~~~~~---~~~~A~~~~~~al~~~p  534 (677)
                      ..+.        ...   ..+.|...+.+|+...|
T Consensus       424 ~f~l--------~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  424 RFFL--------RKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHH--------hcCChhhHHHHHHHHHHHHHhCc
Confidence            3333        222   25667777777777666

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.24  E-value=0.84  Score=43.10  Aligned_cols=29  Identities=10%  Similarity=0.289  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKR  420 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  420 (677)
                      .+.+.+|.+..+.|++++|..+|.+++..
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            45556666666666666666666666554

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.04  E-value=9.6  Score=37.31  Aligned_cols=35  Identities=17%  Similarity=-0.003  Sum_probs=22.0

Q ss_pred             cCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Q psy16607        454 MGLYNAELFNNLAL-CCFYSQQYDMVVTCFERALSL  488 (677)
Q Consensus       454 ~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~  488 (677)
                      ..|.....+...+. .|...++...|...+....+.
T Consensus       135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34555566655554 456679999888877766655

; PDB: 3LKU_E 2WPV_G.

>KOG1463|consensus

Probab=92.96  E-value=11  Score=37.55  Aligned_cols=169  Identities=12%  Similarity=0.021  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHc----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----cccchHH
Q psy16607        428 IACIGVNHFYNDQPEVALLFYRRLLQM----G--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAAD  496 (677)
Q Consensus       428 ~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~  496 (677)
                      -..+..+|...++|.+|+......+..    +  +.-.+++..-..+|....+..+|...+..|-...     |......
T Consensus       131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~  210 (411)
T KOG1463|consen  131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT  210 (411)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence            356788999999999999887776642    2  1224566667788888888888888887664432     1110011


Q ss_pred             HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC---CcHHH---HHHHHHHHHhccCHHHHHHHHH--HHHHHhh
Q psy16607        497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL---YNAEL---FNNLALCCFYSQQYDMVVTCFE--RALSLAL  568 (677)
Q Consensus       497 ~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p---~~~~~---~~~la~~~~~~g~~~~A~~~~~--~al~~~~  568 (677)
                      .-..-|..+        ....+|.-|..+|-++++-..   ++..+   +..+-.|-...+..++--..+.  .+++  .
T Consensus       211 lDLqSGIlh--------a~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y  280 (411)
T KOG1463|consen  211 LDLQSGILH--------AAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y  280 (411)
T ss_pred             HHHhcccee--------ecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c
Confidence            111122222        256889999999999885432   22233   3334444555666665444443  3333  4


Q ss_pred             ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607        569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS  623 (677)
Q Consensus       569 ~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p  623 (677)
                      ...+.++...++..+.                 -..+.+|+.|+..|+.-+..+|
T Consensus       281 ~g~~i~AmkavAeA~~-----------------nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  281 AGRDIDAMKAVAEAFG-----------------NRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             cCcchHHHHHHHHHhc-----------------CCcHHHHHHHHHHhHHHHhcCh
Confidence            4555566666666553                 1145678888888888777554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.87  E-value=0.24  Score=32.46  Aligned_cols=30  Identities=30%  Similarity=0.247  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        626 GLSQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       626 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      ..++.++|.+|...|++++|..++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999985

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.42  E-value=3.9  Score=43.38  Aligned_cols=29  Identities=14%  Similarity=0.362  Sum_probs=15.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                      ++..|..||......|+++-|..+|+++-
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            44455555555555555555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0128|consensus

Probab=92.34  E-value=22  Score=39.74  Aligned_cols=56  Identities=14%  Similarity=0.029  Sum_probs=39.3

Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q psy16607        526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA  583 (677)
Q Consensus       526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~  583 (677)
                      +.+.+...+.....|..+..-....|..-.-...+++++.  ..+.+...|...+...
T Consensus       301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~--E~~~~~~~wi~y~~~~  356 (881)
T KOG0128|consen  301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA--EMVLDRALWIGYGVYL  356 (881)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH--hccccHHHHhhhhhhc
Confidence            3344445555556677777777888888888888888887  6677777787777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.32  E-value=3.6  Score=43.61  Aligned_cols=156  Identities=10%  Similarity=0.005  Sum_probs=95.3

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      .+++++++........ ..|.-.......++..+.++|..+.|+...+       +++..+.+   ..+.|+++.|.+..
T Consensus       273 ~~~d~~~v~~~i~~~~-ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~~rFeL---Al~lg~L~~A~~~a  341 (443)
T PF04053_consen  273 LRGDFEEVLRMIAASN-LLPNIPKDQGQSIARFLEKKGYPELALQFVT-------DPDHRFEL---ALQLGNLDIALEIA  341 (443)
T ss_dssp             HTT-HHH-----HHHH-TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHH---HHHCT-HHHHHHHC
T ss_pred             HcCChhhhhhhhhhhh-hcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChHHHhHH---HHhcCCHHHHHHHH
Confidence            3689999877775221 1121123334678888889999888876544       34444444   46789999997764


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  460 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  460 (677)
                      ++     .++...|..+|......|+++-|.++|+++-.        +..+..+|...|+.+.-.++.+.+.....    
T Consensus       342 ~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----  404 (443)
T PF04053_consen  342 KE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD----  404 (443)
T ss_dssp             CC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred             Hh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence            43     34778999999999999999999999998632        34566777788887666666655554432    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                       ++..-.+++..|+.++.++.+.++
T Consensus       405 -~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  405 -INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHc
Confidence             222334556667777777776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4814|consensus

Probab=92.18  E-value=1.2  Score=47.49  Aligned_cols=94  Identities=12%  Similarity=0.122  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEV------TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      .+-|.-.++..+|..+++.|...+...|.+.      .....++.+|..+.+.+.|.+++++|-+.+|.++-....+..+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            3445555566667777777766666555432      2345666666666677777777777766666666665556666


Q ss_pred             HHhCCChHHHHHHHHHHHHc
Q psy16607        435 HFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~  454 (677)
                      ....|..++|+.+.......
T Consensus       438 ~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHhcchHHHHHHHHHHHhh
Confidence            66666666666666655543

>KOG4814|consensus

Probab=92.17  E-value=1.5  Score=46.82  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      +.+-+.-.++..+|..+++.|...+..-|.+    .+......+..+|.        ...+.+.|.++++++-+.+|.++
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL--------~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL--------KLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHhhccccH
Confidence            3445666677788888888888887766655    34556666777776        77888888888888888888888


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      -....+-.+....+.-++|+.+..+...
T Consensus       429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  429 LCQLLMLQSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            8877777777888888888888777665

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.99  E-value=0.33  Score=46.90  Aligned_cols=80  Identities=9%  Similarity=-0.101  Sum_probs=69.0

Q ss_pred             hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHH-HHHHHHHcCCHHHHH
Q psy16607        568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNN-LAVLEAREGHIERAS  646 (677)
Q Consensus       568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~  646 (677)
                      .-++++..|...+....                   +.|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+.
T Consensus       102 kff~D~k~w~~y~~Y~~-------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~R  162 (435)
T COG5191         102 KFFNDPKIWSQYAAYVI-------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSR  162 (435)
T ss_pred             cCCCCcHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHH
Confidence            45788888887777666                   8888999999999999999999999977 555677899999999


Q ss_pred             HHHHHHHHhCCCChHHHHHH
Q psy16607        647 TYLQAAAASSPYLYETHYNQ  666 (677)
Q Consensus       647 ~~~~~al~~~p~~~~~~~~l  666 (677)
                      ..|.+++.++|+++..|+..
T Consensus       163 a~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         163 AMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             HHHHhhhccCCCCchHHHHH
Confidence            99999999999999887653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.93  E-value=0.27  Score=45.42  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=27.9

Q ss_pred             HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      +.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34444455555555555555555555555555555555555555555555554443

>KOG2581|consensus

Probab=91.53  E-value=12  Score=38.05  Aligned_cols=124  Identities=10%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             hcccCHHHHHHHHHHHHhhCc-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHH
Q psy16607        300 HHENDVASAMDLAVESTKACE-FRD-------WWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEAFIRMI  364 (677)
Q Consensus       300 ~~~g~~~~A~~~~~~a~~~~p-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la  364 (677)
                      +...++.+|..+-+..+.... .+.       ...++.+..++...|+...-...+...+....       .......+-
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL  216 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL  216 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence            345777777777666553211 000       11123344444455555544444444443221       122333444


Q ss_pred             HHHHHcCChHHHHHHHHHHHH--cCC--CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC
Q psy16607        365 RVYIRLDQPIRAIDIGRNALD--CYP--NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT  423 (677)
Q Consensus       365 ~~~~~~g~~~~A~~~~~~al~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  423 (677)
                      +.|...+.|+.|.....+..-  ...  .....++.+|.+..-+++|..|.++|-+++...|.
T Consensus       217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            555555666666555554321  011  11234455666666666666666666666666664

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.32  E-value=4.4  Score=37.26  Aligned_cols=53  Identities=9%  Similarity=0.021  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC----CHHHHHHHHHHHHhCCChHHH
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT----CMEAIACIGVNHFYNDQPEVA  444 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A  444 (677)
                      ++..+.+|..|. ..+.++++..+.+++++.+.    +++.+..|+.++...|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            444444444443 33444555555555444322    244555555555555555444

>KOG1310|consensus

Probab=91.31  E-value=0.59  Score=48.60  Aligned_cols=103  Identities=13%  Similarity=-0.011  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhCcCCHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL---NNMPMSVKYYKLILKRDATCMEAIACIG  432 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la  432 (677)
                      ..+-+..-|.--+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.-...+++++|....+++.|+
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            3444444444444445567778888888888887777777777777654   4555666666777777887778888888


Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        433 VNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       433 ~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      .++...+++.+|+.+...+....|.+
T Consensus       453 ~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  453 RALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            88888888888887777766666644

>KOG0529|consensus

Probab=91.26  E-value=19  Score=36.86  Aligned_cols=170  Identities=11%  Similarity=0.021  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHH------------HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC-
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIF------------EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-  440 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-  440 (677)
                      .++++.-.+.+..+|+...+|...-.++            .+..-.++-+.+...+++.+|+...+|+....++.+.+. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            3455555555556665544443222221            122245666778888899999999999999998887764 


Q ss_pred             -hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607        441 -PEVALLFYRRLLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY  515 (677)
Q Consensus       441 -~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~  515 (677)
                       +..=+++++++++.+|.+-.+|...=.+....    ....+=+++..+++..++.+  ..+|.....++.  .+...-.
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSN--YsaWhyRs~lL~--~l~~~~~  201 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSN--YSAWHYRSLLLS--TLHPKEA  201 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchh--hhHHHHHHHHHH--Hhccccc
Confidence             57778899999999998877776544443332    23566678888888888887  888887776653  2211112


Q ss_pred             CCC------HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607        516 NDQ------PEVALLFYRRLLQMGLYNAELFNNLALCC  547 (677)
Q Consensus       516 ~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~  547 (677)
                      .|+      ...-++....++-.+|++..+|+..-..+
T Consensus       202 ~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl  239 (421)
T KOG0529|consen  202 DGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL  239 (421)
T ss_pred             cCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence            332      24455666777888999998887643333

>KOG1310|consensus

Probab=91.15  E-value=0.96  Score=47.09  Aligned_cols=51  Identities=25%  Similarity=0.161  Sum_probs=25.4

Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      +.-.|+.....++.++|....+++.|+.++.+++++.+|+.+...+....|
T Consensus       426 d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  426 DSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            334444444445555555555555555555555555555555544444444

>KOG1839|consensus

Probab=91.13  E-value=2.6  Score=49.21  Aligned_cols=132  Identities=16%  Similarity=0.055  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHH------HHHH-HHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------Cc
Q psy16607        358 EAFIRMIRVYIRLDQPIRAID------IGRN-ALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------DA  422 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p  422 (677)
                      .-....+......|.+.+|.+      .+.. .-.+.|.....+..++.++.+.|++++|+..-.++.-+        .|
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            344555666666677776666      4442 33456778888999999999999999999887776543        23


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607        423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  489 (677)
Q Consensus       423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  489 (677)
                      +....+.+++...+..++...|+..+.++...        .|.......+++.++...++++.|+.+++.|+..+
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            45667788888888888888999988888763        35555677888999999999999999999998754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.01  E-value=0.53  Score=30.77  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSL  566 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  566 (677)
                      .++.++|.+|...|++++|+.++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            56889999999999999999999999984

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.85  E-value=16  Score=35.31  Aligned_cols=200  Identities=11%  Similarity=0.071  Sum_probs=107.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC---------CHHHHHHHHHHHHHcCChHHHHHHHH---HHHHcC--CCcHHHH
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT---------DIEAFIRMIRVYIRLDQPIRAIDIGR---NALDCY--PNEVTIM  394 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~--p~~~~~~  394 (677)
                      .+++-..+.+++++|+..|.+.+...-         ...+...++.+|...|++..-.+...   .+....  |....+.
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii   87 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII   87 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence            455555666667777777776665421         23456667777777776554333222   222221  1111111


Q ss_pred             HHHHHHH-HHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCHHH
Q psy16607        395 TEMARIF-EGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQM------GLYNAEL  461 (677)
Q Consensus       395 ~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~  461 (677)
                      ..+..-+ .....++.-+......++.....      ...-..++.++++.|+|.+|+......+..      .+.-..+
T Consensus        88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v  167 (421)
T COG5159          88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV  167 (421)
T ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence            1111111 12233444444444444432221      223356788899999999999988766542      2334567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM  532 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~  532 (677)
                      +..-..+|....+..++...+..|-.....- .-+....++-.    ....-++...+|.-|..+|-++++-
T Consensus       168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL----~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL----LSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH----hccceeeccccchhHHHHHHHHHhc
Confidence            7777888888888888887776654332110 00111111110    0111124677889999999888854

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.80  E-value=0.45  Score=46.03  Aligned_cols=80  Identities=10%  Similarity=0.064  Sum_probs=42.4

Q ss_pred             HHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607        384 LDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC-IGVNHFYNDQPEVALLFYRRLLQMGLYNAELF  462 (677)
Q Consensus       384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  462 (677)
                      -...|+++..|...+....+.|.+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...+.+++..+|++|.+|
T Consensus       100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            33445555555555555555555555555555555555555555543 33334445555555555555555555555554


Q ss_pred             H
Q psy16607        463 N  463 (677)
Q Consensus       463 ~  463 (677)
                      .
T Consensus       180 ~  180 (435)
T COG5191         180 I  180 (435)
T ss_pred             H
Confidence            3

>KOG1839|consensus

Probab=90.51  E-value=2.9  Score=48.85  Aligned_cols=159  Identities=14%  Similarity=0.087  Sum_probs=114.1

Q ss_pred             HHHHHHHHcCCHHHHHH------HHHHHHc-cCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHH
Q psy16607        329 QLGKCYFSLGLIREAQQ------QFNSALN-QFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY--------PNEVT  392 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~------~~~~al~-~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~  392 (677)
                      ..|......|.+.+|.+      ++..... ..| ....+..++.++.+.+++++|+..-.++.-+.        |+...
T Consensus       937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen  937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence            45666666777777766      4443333 233 56788999999999999999999887765332        44566


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--------
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--------  456 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------  456 (677)
                      .+.+++......++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.+++...        
T Consensus      1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred             HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence            7788888888888999999998888765        344556667888888888999999999999988432        


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        457 YNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      .....+..+++.+...+++..|....+....
T Consensus      1097 ~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence            1334556666777666766666665555443

>KOG2422|consensus

Probab=90.36  E-value=21  Score=38.21  Aligned_cols=49  Identities=12%  Similarity=0.047  Sum_probs=37.0

Q ss_pred             cCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHH-hccCHHHHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCF-YSQQYDMVVTCFERA  563 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a  563 (677)
                      +.|-+.-|.++++-.++++|. +|-+...+...|. +..+|.=-+..++..
T Consensus       354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            789999999999999999998 8876666665553 455666556555554

>KOG3807|consensus

Probab=90.01  E-value=21  Score=35.27  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607        555 MVVTCFERALSLALNENAADVWYNIS  580 (677)
Q Consensus       555 ~A~~~~~~al~~~~~p~~~~~~~~l~  580 (677)
                      .|++.+.++++  .+|.-+..+..+-
T Consensus       380 ~AvEAihRAvE--FNPHVPkYLLE~k  403 (556)
T KOG3807|consen  380 NAVEAIHRAVE--FNPHVPKYLLEMK  403 (556)
T ss_pred             HHHHHHHHHhh--cCCCCcHHHHHHH
Confidence            47788888888  7777666555443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.81  E-value=0.41  Score=41.51  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=39.9

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHhhhCccchhhHHHHhhhhcccccccc
Q psy16607         15 MFYAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD   63 (677)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (677)
                      +-+|-.++..|+|.-|+++++.++.-||+|.++-.+|+.++.+.++-.+
T Consensus        74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            3456778999999999999999999999999999999999988776544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.60  E-value=1.3  Score=28.20  Aligned_cols=33  Identities=18%  Similarity=0.087  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q psy16607        627 LSQNNLAVLEAREGHIERASTY--LQAAAASSPYL  659 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~  659 (677)
                      +.++.+|..+...|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            5678899999999999999999  54887777764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.39  E-value=4.5  Score=41.19  Aligned_cols=108  Identities=11%  Similarity=-0.042  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP  441 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  441 (677)
                      .-|..++++++|..|..-|+.++++..+-.        +..+ -.+..+...+.-+       ...-..+..||..+++.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~--------a~~k-~~~~~~~di~~va-------SfIetklv~CYL~~rkp  244 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGA--------ALSK-PFKASAEDISSVA-------SFIETKLVTCYLRMRKP  244 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhh--------hccC-CCCCChhhHHHHH-------HHHHHHHHHhhhhcCCC
Confidence            346667777888888877777776543110        0000 0000111111000       11224567788888888


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       442 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      +-|+....+.+..+|....-+...+.++..+.+|.+|...+--+
T Consensus       245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888877665444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.21  E-value=3.9  Score=37.63  Aligned_cols=77  Identities=19%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             HHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCChh
Q psy16607        335 FSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN----EVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       335 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~  408 (677)
                      ..+-.-++|...|-++-....  +++..+.+|..|. ..+.++++.++.+++++.+.    +++++..++.++.+.|+++
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            334344677777777655444  7788888888777 46788899998888887543    5788889999999999988


Q ss_pred             HHHH
Q psy16607        409 MSVK  412 (677)
Q Consensus       409 ~A~~  412 (677)
                      .|--
T Consensus       196 ~AYi  199 (203)
T PF11207_consen  196 QAYI  199 (203)
T ss_pred             hhhh
Confidence            8753

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.14  E-value=4.5  Score=39.08  Aligned_cols=64  Identities=14%  Similarity=0.036  Sum_probs=58.6

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      ..++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-.-..
T Consensus       193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987654433

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.04  E-value=0.66  Score=40.26  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=41.9

Q ss_pred             ChHH-HHHHhhhhcChHHHHHHHHHHhhcCCCCchhHHHHHhhhhhhhhhhc
Q psy16607        118 DSMF-YAVDHFHKRNFEKCAAICTELLAKNPYDKAAWTLKMRSLTSQLSVDD  168 (677)
Q Consensus       118 ~~~~-~a~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~d~  168 (677)
                      ++++ .|..++..|+|.-|+++++.++..+|++.++..+|+.+|.+.++..+
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            4444 67889999999999999999999999999999999999999876654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.71  E-value=0.7  Score=26.80  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQ  650 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~  650 (677)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.62  E-value=36  Score=36.00  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      .+-.++.......-....+.+++....+.-+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ ++..
T Consensus        71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~s  148 (711)
T COG1747          71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKS  148 (711)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchh
Confidence            344444444555556677888887777778888888888877 55677777888888877777777777777776 7778


Q ss_pred             HHHHHHHHHHHh
Q psy16607        409 MSVKYYKLILKR  420 (677)
Q Consensus       409 ~A~~~~~~al~~  420 (677)
                      ++..+|.+++..
T Consensus       149 k~a~~f~Ka~yr  160 (711)
T COG1747         149 KAAEFFGKALYR  160 (711)
T ss_pred             hHHHHHHHHHHH
Confidence            888888887653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.47  E-value=3.2  Score=33.30  Aligned_cols=59  Identities=20%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             cCCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607        515 YNDQPEVALLFYRRLLQMGLY---------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                      +.+++..|++.+.+.++....         ...+..++|.++...|++++|+..+++++.++...++.
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~   77 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR   77 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence            789999999888888743221         23567789999999999999999999999976554444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.38  E-value=4.8  Score=39.42  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=59.3

Q ss_pred             cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607        570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL  649 (677)
Q Consensus       570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  649 (677)
                      .....++..++..+.                   ..|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|
T Consensus       150 e~~~~~l~~lae~~~-------------------~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y  210 (280)
T COG3629         150 ELFIKALTKLAEALI-------------------ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY  210 (280)
T ss_pred             HHHHHHHHHHHHHHH-------------------hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence            344556667777777                   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy16607        650 QAAAAS  655 (677)
Q Consensus       650 ~~al~~  655 (677)
                      ++.-+.
T Consensus       211 ~~l~~~  216 (280)
T COG3629         211 RQLKKT  216 (280)
T ss_pred             HHHHHH
Confidence            998774

>KOG2063|consensus

Probab=88.02  E-value=39  Score=38.83  Aligned_cols=170  Identities=10%  Similarity=0.073  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhC----cCCHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCCHH-------
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAE-------  460 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~-------  460 (677)
                      +..++.+|...|+.++|++.+.+.....    +.....+-.+...+...+..  +-..++-.-.+..+|....       
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            5688999999999999999999988733    33344444455555555554  5555655555555554221       


Q ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhc-ccccCCCHHHHHHH--HHHHHH
Q psy16607        461 ------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALS-TSVYNDQPEVALLF--YRRLLQ  531 (677)
Q Consensus       461 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~-~~~~~~~~~~A~~~--~~~al~  531 (677)
                            .-.....-|......+-++.+++.++...... ....+..+...|. .... .....++-+++.+.  .++...
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-~~~lht~ll~ly~-e~v~~~~~~~~kg~e~~E~~~rekl~~  664 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-STLLHTVLLKLYL-EKVLEQASTDGKGEEAPETTVREKLLD  664 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-chHHHHHHHHHHH-HHHhhccCchhccccchhhhHHHHHHH
Confidence                  01112233566778888999999998776553 1333444444443 1111 11222333344444  222221


Q ss_pred             -------cCCC-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        532 -------MGLY-------NAELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       532 -------~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                             .+|.       ....|...+.++.++|+.++|+..|-..+.
T Consensus       665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence                   1121       145677788888899999999988876664

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.58  E-value=1.3  Score=28.51  Aligned_cols=30  Identities=13%  Similarity=0.039  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      +++..||.+-...++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.57  E-value=3  Score=33.43  Aligned_cols=56  Identities=27%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             cCCCHHHHHHHHHHHHccCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        604 GISDTRLAIQCLHLALSIDSS---------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      +.|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..+++++++....
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            899999999888888765322         13567889999999999999999999999976543

>KOG2396|consensus

Probab=87.30  E-value=43  Score=35.39  Aligned_cols=82  Identities=11%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             hhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q psy16607        277 SRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG-LIREAQQQFNSALNQFT  355 (677)
Q Consensus       277 ~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  355 (677)
                      -+.-..++..+..+...++.+ ..+.+.+.+-..+|.+++..+|.+...| ..-|.-.+..+ +.+.|...|.+++..+|
T Consensus        94 yr~at~rf~~D~~lW~~yi~f-~kk~~~~~~v~ki~~~~l~~Hp~~~dLW-I~aA~wefe~n~ni~saRalflrgLR~np  171 (568)
T KOG2396|consen   94 YRRATNRFNGDVKLWLSYIAF-CKKKKTYGEVKKIFAAMLAKHPNNPDLW-IYAAKWEFEINLNIESARALFLRGLRFNP  171 (568)
T ss_pred             HHHHHHhcCCCHHHHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCCchhH-HhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence            334455555566666666664 2233558999999999999998777777 45555555544 49999999999999998


Q ss_pred             -CHHHH
Q psy16607        356 -DIEAF  360 (677)
Q Consensus       356 -~~~~~  360 (677)
                       .+..|
T Consensus       172 dsp~Lw  177 (568)
T KOG2396|consen  172 DSPKLW  177 (568)
T ss_pred             CChHHH
Confidence             44443

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=86.91  E-value=28  Score=33.48  Aligned_cols=46  Identities=22%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHc-----cCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q psy16607        609 RLAIQCLHLALS-----IDSSHGL---SQNNLAVLE-AREGHIERASTYLQAAAA  654 (677)
Q Consensus       609 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~  654 (677)
                      ++|...|++|+.     +.|.+|-   ...+.+..| ...|+.++|+...+++++
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            456666666554     4566653   233444444 447888888888877765

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.52  E-value=4.1  Score=39.89  Aligned_cols=62  Identities=10%  Similarity=0.165  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK  419 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  419 (677)
                      .++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            35556666677777777777777777777777777777777777777777777777766554

>PF13041 PPR_2: PPR repeat family

Probab=86.41  E-value=3.2  Score=28.53  Aligned_cols=40  Identities=20%  Similarity=0.138  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHH
Q psy16607        327 KVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRV  366 (677)
Q Consensus       327 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~  366 (677)
                      +..+-..+.+.|++++|.++|+++.+..  |+..++..+...
T Consensus         6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~   47 (50)
T PF13041_consen    6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING   47 (50)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3556666666677777777777666543  455555554443

>KOG3807|consensus

Probab=86.39  E-value=37  Score=33.70  Aligned_cols=134  Identities=15%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      -+.+-....+..+..+-++....+++++|+...++..++.-  ..--..+|.+.|+++++....    .++........|
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~  260 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQS  260 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhc
Confidence            34555556677788888888999999999998888887753  233466788888888875432    222222222233


Q ss_pred             ChHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        440 QPEVALLFYRRLLQMGLYNA--ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      ...+|.      .+.+ .+.  .+-..++.|..++|+..+|++.++...+..|-.....++-++...+.
T Consensus       261 ~~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalL  322 (556)
T KOG3807|consen  261 PQHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALL  322 (556)
T ss_pred             cchhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence            222222      1111 122  33456788888889999999888887766553222333444444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=86.17  E-value=5.3  Score=38.59  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=43.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607        364 IRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI  428 (677)
Q Consensus       364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  428 (677)
                      =..+.+.++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|++.+...++..|+.+.+-
T Consensus       188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            34455566677777777777777777776667777777777777777777777666666655443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.60  E-value=47  Score=35.12  Aligned_cols=88  Identities=13%  Similarity=-0.109  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh--ccc---hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLAL--NEN---AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~p~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      ..+....+.++...+.+.+|...+-+.....+  +-.   .+-.+-.++.|+.                           
T Consensus       300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~---------------------------  352 (414)
T PF12739_consen  300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYA---------------------------  352 (414)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhc---------------------------
Confidence            44566677788888998888887777766311  112   2233334444430                           


Q ss_pred             HHHHHHHHcc-CC--C-----ChHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        612 IQCLHLALSI-DS--S-----HGLSQN-NLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       612 ~~~~~~al~~-~p--~-----~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                            .+.. .|  .     -...|. .-|.-|.+.|+...|..+|.+++....
T Consensus       353 ------~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  353 ------SLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             ------ccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence                  0111 01  1     011222 335677888999999999998887654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.39  E-value=2.8  Score=41.57  Aligned_cols=62  Identities=23%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      |..+|.+|..+.|.+...++.+|.+....|+.-.|+-+|-+++-...-.+.+..||..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998776668899999888776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.72  E-value=6.4  Score=30.00  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=35.0

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        544 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       544 a~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      |.-++...+..+|+..++++++  ..++..+-+..+|.+..                ++...|+|.+.+++..+-++
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~--k~~~~~~rf~~lG~l~q----------------A~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALE--KITDREDRFRVLGYLIQ----------------AHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHh--hcCChHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence            4445566677777777777777  44444455555554432                33377777777766554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.20  E-value=5.2  Score=40.77  Aligned_cols=57  Identities=14%  Similarity=0.273  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK  415 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  415 (677)
                      +--.+..||+++++.+-|+....+.+.++|....-+...|.++..+.+|.+|-..+-
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888888888888888888777777777777777777777765543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.19  E-value=3.5  Score=26.17  Aligned_cols=19  Identities=11%  Similarity=0.130  Sum_probs=7.4

Q ss_pred             HHHHHHHHHcCChhHHHHH
Q psy16607        395 TEMARIFEGLNNMPMSVKY  413 (677)
Q Consensus       395 ~~la~~~~~~g~~~~A~~~  413 (677)
                      ..+|..+...|++++|+..
T Consensus         5 y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    5 YGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHH
Confidence            3334444444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF13041 PPR_2: PPR repeat family

Probab=84.14  E-value=5  Score=27.52  Aligned_cols=39  Identities=8%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                      +...|+.+-..+.+.|++++|.++|+++.+.+..|+...
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T   40 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT   40 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence            456788899999999999999999999998766666543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.65  E-value=1.5  Score=25.43  Aligned_cols=24  Identities=13%  Similarity=-0.076  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFE  561 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~  561 (677)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            457789999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1463|consensus

Probab=83.01  E-value=54  Score=32.84  Aligned_cols=170  Identities=12%  Similarity=-0.042  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALS----LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-----  532 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-----  532 (677)
                      -..+..+|...++|.+|+......+.    ++......+++..-..+|.        ...+..+|...+..+-..     
T Consensus       131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~--------~l~Nl~KakasLTsART~AnaiY  202 (411)
T KOG1463|consen  131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYH--------ALRNLPKAKASLTSARTTANAIY  202 (411)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHH--------HHhcchhHHHHHHHHHHhhcccc
Confidence            34678899999999999987766553    2222223344444444554        677778887777766532     


Q ss_pred             CCCcHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHH---HHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607        533 GLYNAEL--FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNI---SHVAIITECSPFSFSTHTSYLFIQGIS  606 (677)
Q Consensus       533 ~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l---~~~~~~~~~~p~~~~~~~~~~~l~~~g  606 (677)
                      .|....+  =..-|..+....+|.-|..+|-++.+-...- ++..+...+   -.|-.                   ..+
T Consensus       203 cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKI-------------------Mln  263 (411)
T KOG1463|consen  203 CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKI-------------------MLN  263 (411)
T ss_pred             cCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHH-------------------Hhc
Confidence            1221111  1223666667789999999999998732222 223333322   22222                   445


Q ss_pred             CHHH--HHHHHHHHHccCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Q psy16607        607 DTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAR--EGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       607 ~~~~--A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~  658 (677)
                      ..++  ++-.-+.+++....+.++....+..+.+  +.+|+.|+..|+.=+..+|-
T Consensus       264 ~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  264 LPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             CHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            5554  3333455666666677788888877754  46899999999888776663

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.89  E-value=29  Score=36.08  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhC---------cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRD---------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      ...+.+++.-+|+|..|++.++-. +++         +-+...++.+|.+|..+++|.+|++.|...+-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888899999998887642 222         22466788999999999999999999988764

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.58  E-value=41  Score=31.48  Aligned_cols=59  Identities=10%  Similarity=0.022  Sum_probs=50.9

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                      .++.+...+++...+.-++..|.+......+-.++.-.|++++|...++-+-.  ..|++.
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t   69 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDT   69 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccc
Confidence            34778889999999999999999999999999999999999999999998888  666553

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=82.47  E-value=58  Score=34.47  Aligned_cols=93  Identities=10%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHh--CcC-----CHHHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKR--DAT-----CMEAIACIGVNH--FYNDQPEVALLFYRRLLQMGLYNAELF  462 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~  462 (677)
                      ......+.++...|.+.+|...+-+....  ..+     ..-.+-.++.++  ............+++       ...-+
T Consensus       301 R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-------~af~~  373 (414)
T PF12739_consen  301 RCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-------YAFHM  373 (414)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH-------HHHHH
Confidence            34556666777778877777766665544  211     222333444444  111110000000000       11123


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        463 NNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      ..-|.-|.+.|+...|..+|.+++.....
T Consensus       374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  374 VLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            34467888999999999999999876543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.80  E-value=13  Score=28.32  Aligned_cols=50  Identities=8%  Similarity=0.046  Sum_probs=24.8

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHH---HHHHHHHHcCChhHHHHHHHH
Q psy16607        367 YIRLDQPIRAIDIGRNALDCYPNEVTIMT---EMARIFEGLNNMPMSVKYYKL  416 (677)
Q Consensus       367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~  416 (677)
                      ++...+.++|+..++++++..++..+-+.   .+..+|...|+|.+.+++-.+
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555544443332   233445555555555554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=81.72  E-value=36  Score=33.92  Aligned_cols=86  Identities=6%  Similarity=-0.004  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607        340 IREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--YPNEVTIMTEMARIFEGLNNMPMSVKYYKLI  417 (677)
Q Consensus       340 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  417 (677)
                      +..-..+|.-.....|++.+-.+.+....+..-...++...+.+...  -......+...|..+.++|+.++|...|+++
T Consensus       312 W~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA  391 (415)
T COG4941         312 WPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA  391 (415)
T ss_pred             hHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444433322  1112223344455555555555555555555


Q ss_pred             HHhCcCCH
Q psy16607        418 LKRDATCM  425 (677)
Q Consensus       418 l~~~p~~~  425 (677)
                      +.+.++..
T Consensus       392 i~La~~~a  399 (415)
T COG4941         392 IALARNAA  399 (415)
T ss_pred             HHhcCChH
Confidence            55544433

>KOG4014|consensus

Probab=81.65  E-value=40  Score=30.47  Aligned_cols=155  Identities=12%  Similarity=0.018  Sum_probs=76.5

Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607        328 VQLGKCYFS-LGLIREAQQQFNSALNQFTDIEAFIRMIRVYIR-----LDQPIRAIDIGRNALDCYPNEVTIMTEMARIF  401 (677)
Q Consensus       328 ~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  401 (677)
                      ..||..+.. +.+|++|.+.|..--..+..+...+.+|..+..     .+++..|++.+..+-..  +.+.+...+|.++
T Consensus        38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~  115 (248)
T KOG4014|consen   38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLH  115 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhh
Confidence            444444332 345666666665554444444455555444332     23556666666665542  3455555555555


Q ss_pred             HHc-----C--ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh------------------------CCChHHHHHHHHH
Q psy16607        402 EGL-----N--NMPMSVKYYKLILKRDATCMEAIACIGVNHFY------------------------NDQPEVALLFYRR  450 (677)
Q Consensus       402 ~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------------------~g~~~~A~~~~~~  450 (677)
                      ..-     +  +.++|.+++.++-.+.  +..+.+.|...|..                        ..+.+.|.++.-+
T Consensus       116 ~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~k  193 (248)
T KOG4014|consen  116 WNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIK  193 (248)
T ss_pred             ccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHH
Confidence            432     1  2456666666665443  33444444444433                        2344555555555


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q psy16607        451 LLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSL  488 (677)
Q Consensus       451 al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~  488 (677)
                      +.+++  ++.+..++.+.|..-    .+.++|..+-.++.++
T Consensus       194 ACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  194 ACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            55543  445555555555432    2345555555555444

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=81.27  E-value=2.4  Score=25.63  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=26.1

Q ss_pred             hchhHHHHHHHHHhhhCccchhhHHHHhhh
Q psy16607         25 RNFEKCAAICTELLAKNPYDKAAWTLKMRS   54 (677)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (677)
                      |+++.|..+|++++...|.+..+|..=++.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            578999999999999999999999865543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2114|consensus

Probab=81.11  E-value=29  Score=38.89  Aligned_cols=57  Identities=14%  Similarity=0.001  Sum_probs=35.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        397 MARIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       397 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      .-.++.+..-|+-|+...+.- ..+++ -.......|..++..|++++|...|-+.+..
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            345556666677777665442 22332 2445566777777888888888887777764

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=80.58  E-value=36  Score=32.76  Aligned_cols=50  Identities=20%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHhh---ccchH---HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        553 YDMVVTCFERALSLAL---NENAA---DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       553 ~~~A~~~~~~al~~~~---~p~~~---~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      .++|...|++|+.++.   .|.++   ....+.+..|.                  ..+|+.++|+...++++.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~y------------------ei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYY------------------EILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH------------------HTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHH------------------HHcCChHHHHHHHHHHHH
Confidence            3677888888877542   34444   23334444432                  279999999998888775

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=80.24  E-value=2.6  Score=25.58  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.2

Q ss_pred             HHHHHHHHhhhCccchhhHHHHhhhh
Q psy16607         30 CAAICTELLAKNPYDKAAWTLKMRSL   55 (677)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (677)
                      -++.+++++.+||.|..+|.-|.-++
T Consensus         2 El~~~~~~l~~~pknys~W~yR~~ll   27 (31)
T PF01239_consen    2 ELEFTKKALEKDPKNYSAWNYRRWLL   27 (31)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcccccHHHHHHHHH
Confidence            46788999999999999999886654

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	677
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
           AE + NL    +    YD  +  +++AL L  +  +A+ WYN+      NA       D+
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG-----NAYYKQGDYDE 53
Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
              A+ +Y++ L++   +AE + NL    +    YD  +  +++AL   L+  +A+ WYN
Sbjct: 54  ---AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYN 108
Query: 579 ISH 581
           + +
Sbjct: 109 LGN 111

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552
           N+A+ WYN+      NA       D+   A+ +Y++ L++   NAE + NL    +    
Sbjct: 7   NSAEAWYNLG-----NAYYKQGDYDE---AIEYYQKALELDPNNAEAWYNLGNAYYKQGD 58
Query: 553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612
           YD  +  +++AL   L+ N A+ WYN+ +                   + QG  D   AI
Sbjct: 59  YDEAIEYYQKALE--LDPNNAEAWYNLGNA-----------------YYKQGDYDE--AI 97
Query: 613 QCLHLALSIDSSHGLSQNNLAVLEAREG 640
           +    AL +D ++  ++ NL   + ++G
Sbjct: 98  EYYQKALELDPNNAEAKQNLGNAKQKQG 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	677
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-15
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  104 bits (262), Expect = 3e-24
 Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 32/341 (9%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
           L   +F    +  +      A+ Q     EA+  +  VY    Q   AI+  R+AL   P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
           + +     +A       +M  +V+ Y   L+ +       + +G       + E A   Y
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
            + ++     A  ++NL        +  + +  FE+A+   L+ N  D + N+    +L 
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLG--NVLK 214

Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
                      + A+  Y R L +   +A +  NLA   +     D+ +  + RA+   L
Sbjct: 215 EA------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--EL 266

Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
             +  D + N+++                  L  +G      A  C + AL +  +H  S
Sbjct: 267 QPHFPDAYCNLANA-----------------LKEKG--SVAEAEDCYNTALRLCPTHADS 307

Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            NNLA ++  +G+IE A    + A    P     H N A +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (253), Expect = 4e-23
 Identities = 53/343 (15%), Positives = 118/343 (34%), Gaps = 32/343 (9%)

Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
           ++L    +  G    A++       Q   +    + +  ++ +  +  R+      A+  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446
            P      + +  +++    +  ++++Y+  L+     ++    +          E A+ 
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
            Y   LQ       + ++L        + +    C+ +A  +    N A  W N+    +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA--IETQPNFAVAWSNLG--CV 178

Query: 507 LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
            NA        +  +A+  + + + +     + + NL      ++ +D  V  + RA  L
Sbjct: 179 FNAQ------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA--L 230

Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
           +L+ N A V  N++ V                  + QG     LAI     A+ +     
Sbjct: 231 SLSPNHAVVHGNLACV-----------------YYEQG--LIDLAIDTYRRAIELQPHFP 271

Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            +  NLA     +G +  A      A    P   ++  N A I
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 22/223 (9%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
           + +LG +  AQ +   A++ F          ++A+I +  V        RA+     AL 
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             PN   +   +A ++     + +++  Y+  ++      +A   +            A 
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
             Y   L++   +A+  NNLA         +  V  + +A  L +    A    N++   
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLA--- 346

Query: 506 ILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALC 546
                  SV   Q   + AL+ Y+  +++    A+ ++N+   
Sbjct: 347 -------SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  104 bits (262), Expect = 1e-23
 Identities = 73/516 (14%), Positives = 143/516 (27%), Gaps = 102/516 (19%)

Query: 208 SRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLS 267
                      +  + P ++ +       S  +  T      L +         +     
Sbjct: 17  GNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANN-------TSTDGSF 69

Query: 268 QPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAM-DLAVESTKACEFRDWWW 326
             +        L+   Y R      +  + L   +   A+ + +  ++ T      D +W
Sbjct: 70  LKERNAQNTDSLSREDYLR-----LWRHDALMQQQYKCAAFVGEKVLDITG--NPNDAFW 122

Query: 327 KVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDI------- 379
              L + Y   G    A+                       ++L     A+++       
Sbjct: 123 ---LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179

Query: 380 ---GRNALDCYPNEVTIMTE------MARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430
               +NA      +  I  E        +++  L+N   + + YK  L  DA C EA   
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239

Query: 431 IGVNHFYNDQPEVALL--------------FYRRLLQMGLY------------------- 457
           +  NH      E  L+              F R L  + L                    
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299

Query: 458 ----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513
               +++L    A   F   ++  V+    + L   ++    DV+    H+A L+     
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPL--HLASLHES--- 352

Query: 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
               +     L    L+      A  +  + +      +       F ++ +  ++    
Sbjct: 353 ---GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFG 407

Query: 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633
             W   +H                    I+G  D   AI     A  +     L    L 
Sbjct: 408 PAWIGFAHS-----------------FAIEGEHD--QAISAYTTAARLFQGTHLPYLFLG 448

Query: 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           +   + G+I  A+ YLQ++ A   Y         V+
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 94.5 bits (235), Expect = 2e-20
 Identities = 48/370 (12%), Positives = 106/370 (28%), Gaps = 35/370 (9%)

Query: 301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAF 360
            E D+   ++ +  S +   F    + ++L K       +R A+   +S        +  
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK-TSHEDELRRAEDYLSSINGLEKSSDLL 308

Query: 361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR 420
           +          + I  + I    L+  P  + +                       ++ R
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368

Query: 421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 480
                     +G+ +   ++   A  ++ +   M       +   A       ++D  ++
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428

Query: 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540
            +  A  L   +     +  +        L          +A  + +    +  Y+  L 
Sbjct: 429 AYTTAARL--FQGTHLPYLFLG--MQHMQL------GNILLANEYLQSSYALFQYDPLLL 478

Query: 541 NNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVWYNISHVAIITECSPFSFST 595
           N L +  F        +  F+ AL L        +  A  W N+ H              
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA------------- 525

Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
                    + D   AI  L+  L + ++       +A++   +     A T+L  + A 
Sbjct: 526 ----YRKLKMYD--AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579

Query: 656 SPYLYETHYN 665
           SP        
Sbjct: 580 SPNEIMASDL 589

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 94.5 bits (235), Expect = 2e-20
 Identities = 47/387 (12%), Positives = 118/387 (30%), Gaps = 46/387 (11%)

Query: 259 RLGTASMLSQPDGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKA 318
           +L +  +L+  D  +  V +LN + Y+++          L  ++      +  A +   +
Sbjct: 239 QLVSNHLLT-ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297

Query: 319 CE--FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIR 375
                +     +      F      +        L     +++ +   +       +  +
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

Query: 376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH 435
              I  + +D +P +      +   +  +N +  + +Y+      D     A      + 
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417

Query: 436 FYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
               + + A+  Y    ++  G +    +  L +         +     + + +L   + 
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473

Query: 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY-------NAELFNNLALC 546
              +   +  VA              + A+  ++  L +           A  + NL   
Sbjct: 474 DPLLLNELGVVAF--------NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525

Query: 547 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS 606
               + YD  +    + L   L+ N A+V   I+ V                    +   
Sbjct: 526 YRKLKMYDAAIDALNQGL--LLSTNDANVHTAIALV-----------------YLHKK-- 564

Query: 607 DTRLAIQCLHLALSIDSSHGLSQNNLA 633
              LAI  LH +L+I  +  ++ + L 
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLK 591

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 20/183 (10%), Positives = 65/183 (35%), Gaps = 10/183 (5%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI-EAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
               +   G   +A   + +A   F      ++ +   +++L   + A +  +++   + 
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM-------EAIACIGVNHFYNDQP 441
            +  ++ E+  +    ++M  ++ +++  L                 A +G  +      
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
           + A+    + L +   +A +   +AL   + +   + +T    +  LA++ N       +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES--LAISPNEIMASDLL 590

Query: 502 SHV 504
              
Sbjct: 591 KRA 593

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 45/338 (13%), Positives = 95/338 (28%), Gaps = 47/338 (13%)

Query: 325 WWKVQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNA 383
              V L + ++     +   +  +  + +           I   + L++      +    
Sbjct: 23  DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

Query: 384 LDCYPNEVTIMTEMARIFEGLNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 442
           +D YP+       +   +  + +    + +Y       + T   A    G +     + +
Sbjct: 83  VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142

Query: 443 VALLFYRR--LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 500
            A+  Y     L  G +       + L    +    +    F +ALS+        V + 
Sbjct: 143 QAMAAYFTAAQLMKGCHLP--MLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHE 198

Query: 501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---------NAELFNNLALCCFYSQ 551
           +              N + + A  ++   L+                L NNL   C   +
Sbjct: 199 VG-----VVAF---QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250

Query: 552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611
           +Y   +    +AL   L    A  +  I ++                   + G  +   A
Sbjct: 251 KYAEALDYHRQAL--VLIPQNASTYSAIGYI-----------------HSLMG--NFENA 289

Query: 612 IQCLHLALSIDSSHGLSQNNLA-VLEAREGHIERASTY 648
           +   H AL +      S   L   +E   G  E     
Sbjct: 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 32/320 (10%), Positives = 86/320 (26%), Gaps = 57/320 (17%)

Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
             ++D     + ++  +A       +  M  K   +++++D      +          ++
Sbjct: 12  PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK 71

Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVW 498
                    +L+ +   N   +  +  C +     + +       +A +  L +     W
Sbjct: 72  ANELFYLSHKLVDLYPSNPVSWFAVG-CYYLMVGHKNEHARRYLSKATT--LEKTYGPAW 128

Query: 499 YNISHV---------AI--------LNALSTSVYN---------DQPEVALLFYRRLLQM 532
               H          A+        L                  +  ++A  F+ + L +
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-------LNENAADVWYNISHVAII 585
              +  + + + +  F + ++      F  AL            +    +  N+ HV   
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV--- 245

Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
                                    A+     AL +   +  + + +  + +  G+ E A
Sbjct: 246 --------------CRKLKKYA--EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289

Query: 646 STYLQAAAASSPYLYETHYN 665
             Y   A         +   
Sbjct: 290 VDYFHTALGLRRDDTFSVTM 309

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 37/235 (15%)

Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
           YN   E  +      LQ    N ++  +LA   +Y+  + M        +    +   A 
Sbjct: 3   YNKPSETVIPESVDGLQ---ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHAS 57

Query: 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ--QYD 554
                 H+  L  L      ++         +L+ +   N   +  +  C +     + +
Sbjct: 58  CLPV--HIGTLVEL------NKANELFYLSHKLVDLYPSNPVSWFAVG-CYYLMVGHKNE 108

Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
                  +A +L   +     W    H                    ++   D   A+  
Sbjct: 109 HARRYLSKATTL--EKTYGPAWIAYGHS-----------------FAVESEHDQ--AMAA 147

Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
              A  +     L    + +      + + A  +   A + +P      +   V+
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 23/253 (9%), Positives = 65/253 (25%), Gaps = 39/253 (15%)

Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
           + +  +   H+YN   ++       +++   ++A              + + +     + 
Sbjct: 23  DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

Query: 486 LSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
           +   L  +    W+ +                + E A  +  +   +       +     
Sbjct: 83  VD--LYPSNPVSWFAVG-----CYYLMV--GHKNEHARRYLSKATTLEKTYGPAWIAYGH 133

Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605
                 ++D  +  +  A    L +        I                      +   
Sbjct: 134 SFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLE-----------------YGLTN- 173

Query: 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA---------AASS 656
            +++LA +    ALSI        + + V+  + G  + A  +   A           + 
Sbjct: 174 -NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

Query: 657 PYLYETHYNQAVI 669
                   N   +
Sbjct: 233 DKWEPLLNNLGHV 245

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 32/254 (12%), Positives = 78/254 (30%), Gaps = 5/254 (1%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
             G   F       A +    A+  F  + ++I M  +    +      +    AL    
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
           N  ++     ++   L N   + K +    + D   +     +    +  ++ +     +
Sbjct: 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIL 507
               +      E+ N  A        +D  +  ++ A+   L      ++  I+ +    
Sbjct: 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGIAPLVGKA 419

Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
             L+ +   +    A     +  ++   + +    LA      +  D  +T FE +  LA
Sbjct: 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479

Query: 568 LNENAADVWYNISH 581
                 +    I+ 
Sbjct: 480 RTM--EEKLQAITF 491

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 23/293 (7%)

Query: 375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN 434
             +D               +          N+   + +  K  ++     + +   + + 
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279

Query: 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 494
               +       ++ + L++   N+ ++ +     F  Q YD     F++A  L  +   
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPEN 337

Query: 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 554
              +  ++              ++ +     +    +      E+ N  A        +D
Sbjct: 338 IFPYIQLA-----CLAY---RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389

Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
             +  ++ A+ L        ++  I+ +              T       + +   A   
Sbjct: 390 KALKQYDLAIEL--ENKLDGIYVGIAPL----------VGKATLLTRNPTVENFIEATNL 437

Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
           L  A  +D     ++  LA ++ ++  I+ A T  + +A  +  + E      
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 54/359 (15%), Positives = 102/359 (28%), Gaps = 41/359 (11%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAI----------D 378
           L  CY S+G +++  +    AL       +  +R       L +   A+          D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI----LKRDATCMEAIACIGVN 434
               +++           M+++ E   ++  +      +     K      E +  +   
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164

Query: 435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL---ALN 491
             +    +  L F             +     L     + YD     F +A  L    L+
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224

Query: 492 ENAADVWYNISHVAILNALSTSVYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550
           +N  D          L       +    P  A    ++ +++       +  +AL     
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADR 283

Query: 551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL 610
                    F++AL L  + N + V+Y+   +                  FI    +   
Sbjct: 284 NDSTEYYNYFDKALKL--DSNNSSVYYHRGQM-----------------NFILQ--NYDQ 322

Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           A +    A  +D  +      LA L  RE   +   T    A    P   E     A I
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 8e-13
 Identities = 29/345 (8%), Positives = 83/345 (24%), Gaps = 47/345 (13%)

Query: 332 KCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390
           +      L ++A  +                 +     +  +  +       ++  +   
Sbjct: 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170

Query: 391 VTIMTEMARIFEGLNNMPMSVKYYK-LILKRDATCMEAIACIGVNHFYNDQPEV---ALL 446
                  A   E        +     L  +   +  +A         +     +    L 
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES------FTKAARLFEEQLD 224

Query: 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
                 ++    A    +  +  F            ++A+ L    N+   +  ++    
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS---YIYMA---- 277

Query: 507 LNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
                  +  D+        ++ + L++   N+ ++ +     F  Q YD     F++A 
Sbjct: 278 ------LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331

Query: 565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624
            L  +      +  ++ +                  + +              A      
Sbjct: 332 EL--DPENIFPYIQLACL-----------------AYREN--KFDDCETLFSEAKRKFPE 370

Query: 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
                N  A +   +   ++A      A      L   +   A +
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 32/270 (11%), Positives = 72/270 (26%), Gaps = 35/270 (12%)

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSL-- 488
           G   F N + + A+ +Y   L+  L  +   ++NL+ C         VV    +AL L  
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE--LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 489 -----------------------------ALNENAADVWYNISHVAILNALSTSVYNDQP 519
                                        +LN +  D          LN  + S   ++ 
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 520 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
                      ++    A+   +                 F+  L+ A  + + +    +
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190

Query: 580 SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 639
            +                   F +        +   +    +     +S  +  + +  +
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 640 GHIERASTYLQAAAASSPYLYETHYNQAVI 669
                A   ++ A    P    ++   A+I
Sbjct: 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALI 279

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
            A    +     F +++YD  +  +  A  L L E+    + N+S  A   ++       
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWA--LELKED-PVFYSNLS--ACYVSVG------ 53

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER-ALSLALNENAADVW 576
             +  +    + L++    +++    A       ++   +      +L+   N+ + +  
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113

Query: 577 YN 578
             
Sbjct: 114 LE 115

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 16/151 (10%), Positives = 41/151 (27%), Gaps = 10/151 (6%)

Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
           +QL    +      + +  F+ A  +F    E       +    +   +A+     A++ 
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401

Query: 387 YPNEVTIMTEMARIF---------EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY 437
                 I   +A +            + N   +    +   K D    +A   +      
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461

Query: 438 NDQPEVALLFYRRLLQMGLYNAELFNNLALC 468
            +  + A+  +     +     E    +   
Sbjct: 462 QEDIDEAITLFEESADLARTMEEKLQAITFA 492

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 53/403 (13%), Positives = 112/403 (27%), Gaps = 26/403 (6%)

Query: 270 DGPFIQVSRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQ 329
           +G F   S   + +   +K   K L E L   E   +  +     +T    F   +    
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP---SNTSLASFFGIFDSHL 178

Query: 330 LGKCYFSLGLIREAQQQFNSAL---NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
                 +      A    + AL      TD    +    +    D     +         
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446
             N    +          NN+  +    +  +    T   +   + +     +  +    
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297

Query: 447 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 506
           F+++ + +       + +     F  Q Y      F++A SL  N      +  ++    
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLA---- 351

Query: 507 LNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
                  +   Q     +  F+           E+    A        +D  +  ++ A 
Sbjct: 352 ------CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405

Query: 565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS 624
            L   E    +   I  +           S   + L  +  +    AI+ L  A  +D  
Sbjct: 406 RL--EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA---AIKLLTKACELDPR 460

Query: 625 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
              ++  LA L+ +   I+ A    + +A  +  + E      
Sbjct: 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 85.9 bits (213), Expect = 9e-18
 Identities = 52/355 (14%), Positives = 101/355 (28%), Gaps = 47/355 (13%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAI-DIGRNALDCY 387
           +  CY S G + +  +    AL       +A +R       L     A+ D+   +L+  
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124

Query: 388 PNEVTIMTEMARIF----EGLNNMPMSVKYYKL--ILKRDATCMEAIACI-----GVNHF 436
            +  +I   + R        + N  +S    +   +L  + +               +  
Sbjct: 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184

Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENA 494
            +   + A       LQ      +    +A          Y  +++       L   ENA
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL--RENA 242

Query: 495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 554
           A           L         +    A +  +  + +       +  LAL     +   
Sbjct: 243 ALALCYTGIFHFLK--------NNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQ 293

Query: 555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC 614
                F++A+ L  N      +Y+   +                  FI    D + A + 
Sbjct: 294 EFFKFFQKAVDL--NPEYPPTYYHRGQM-----------------YFILQ--DYKNAKED 332

Query: 615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
              A S++  +      LA L  ++G    +  +        P L E     A I
Sbjct: 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 29/261 (11%), Positives = 75/261 (28%), Gaps = 14/261 (5%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN 389
            G  +F    + +AQ     ++N      ++I +       +         + A+D  P 
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308

Query: 390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR 449
                    +++  L +   + + ++     +   +     +    +   +   +  F+ 
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

Query: 450 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNA 509
                     E+    A        +D  +  ++ A    L E    +   I    I  A
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEEVQEKIHVGIG-PLIGKA 425

Query: 510 LSTSVYNDQPEV---------ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 560
              +  + Q            A+    +  ++   + +    LA      ++ D  +  F
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485

Query: 561 ERALSLALNENAADVWYNISH 581
           E +  LA      +     + 
Sbjct: 486 EDSAILARTM--DEKLQATTF 504

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 41/354 (11%), Positives = 96/354 (27%), Gaps = 43/354 (12%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
             G  +F+     EA + +  A+     +   +  +   YI      + I+    AL+  
Sbjct: 30  NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQPEV 443
           P+    +   A   E L N   ++    ++        A+    +             E 
Sbjct: 90  PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149

Query: 444 ALLFYRRLLQMGLYNAELFNNLAL--------CCFYSQQYDMVVTCFERALSLALNENAA 495
                 R  Q+   N  L +   +            S  YD        A  L    +A 
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--LQRLYSAT 207

Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
           D  Y +++  +  +       D     L        +    A       +  F       
Sbjct: 208 DEGYLVANDLLTKST------DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261

Query: 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615
                + +++L       + +  ++                   L  +   +++   +  
Sbjct: 262 AQVLLQESINLHPT---PNSYIFLALT-----------------LADKE--NSQEFFKFF 299

Query: 616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             A+ ++  +  +  +   +       + A    Q A + +P     +   A +
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 31/364 (8%), Positives = 80/364 (21%), Gaps = 58/364 (15%)

Query: 332 KCYFSLGLIREAQQQFNSALNQFTDIE-----AFIRMIRVYIRLDQPIRAIDIGRNALDC 386
           K         E+   F  A+   + +          +  +  R         +  N    
Sbjct: 94  KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153

Query: 387 YPNEVTIMTEMARIFEGLN---------------NMPMSVKYYKLILKRDATCMEAIACI 431
                 ++     +                    N   +       L+R  +  +    +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213

Query: 432 GVNHFYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 489
             +            L        +    A       +  F            + +++L 
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 490 LNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCC 547
                 + +  ++              D+   +    F+++ + +       + +     
Sbjct: 274 PT---PNSYIFLA----------LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320

Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
           F  Q Y      F++A SL  N      +  ++ +                 L+ QG   
Sbjct: 321 FILQDYKNAKEDFQKAQSL--NPENVYPYIQLACL-----------------LYKQG--K 359

Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
              +    +       +        A +    G  + A      A        + H    
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 668 VISN 671
            +  
Sbjct: 420 PLIG 423

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 24/238 (10%), Positives = 55/238 (23%), Gaps = 37/238 (15%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
           A    N     F ++ ++  +  ++ A+   L+ N    + NIS  A   +         
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNIS--ACYISTG------D 74

Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA--------------- 563
            E  + F  + L++   +++     A        +   +                     
Sbjct: 75  LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134

Query: 564 ------LSLALNENAADVWYNISHVAI----ITECSPFSFSTHTSYLFIQGISDTRLAIQ 613
                  ++ +               +            F +H     +   S+   A  
Sbjct: 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194

Query: 614 CLHLALSIDSSHGLSQNNLA--VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            L  AL    S       +A  +L           +                    + 
Sbjct: 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 38/343 (11%), Positives = 97/343 (28%), Gaps = 47/343 (13%)

Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
               + ++G  + A       +  +     A ++   + ++  +   A D  +  L   P
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 389 N---------------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV 433
           +               E+  +   A    G  +   ++ +   IL+      E       
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185

Query: 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
                 +P  A+   +   ++   N E F  ++   +    +++ ++     L   L+++
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQD 243

Query: 494 AADVWYNISHVAILNALSTSVYND----QPEVALLFYRRLLQM----GLYNAELFNNLAL 545
               + +   V  LN L  S        +   A   Y  +++       Y       +  
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303

Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605
           C    ++    +        L +  +  +   + +   +I E                  
Sbjct: 304 CFSKDEKPVEAIRVCSEV--LQMEPDNVNALKDRAEAYLIEE------------------ 343

Query: 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 648
                AIQ    A   + +    +  L   +      ++   Y
Sbjct: 344 -MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 39/355 (10%), Positives = 103/355 (29%), Gaps = 41/355 (11%)

Query: 334 YFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTI 393
           + S G+    +  +  ++    D+E  + + +  +   Q   A+     A+D  P+    
Sbjct: 6   HHSSGVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62

Query: 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453
               A +F  +     ++     +++       A    G       + + A   ++++L+
Sbjct: 63  YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122

Query: 454 MGLYNAELFN---------------NLALCCFYSQQYDMVVTCFERALSLALNENAADVW 498
                 E                  + AL  F S  Y   +   ++   L +    A++ 
Sbjct: 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI--LEVCVWDAELR 180

Query: 499 YNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT 558
              +               +P  A+   +   ++   N E F  ++   +    +++ ++
Sbjct: 181 ELRAEC--FIKE------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA 618
                L   L+++    + +   V  +              L   G      A       
Sbjct: 233 EVRECLK--LDQDHKRCFAHYKQVKKLN-----KLIESAEELIRDG--RYTDATSKYESV 283

Query: 619 LSIDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           +  + S       S+  +    +++     A           P       ++A  
Sbjct: 284 MKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 49/349 (14%), Positives = 95/349 (27%), Gaps = 45/349 (12%)

Query: 329 QLGKCYFSLGLIREAQQQFNSAL----------------NQFTDIEAFIRMIRVYIRLDQ 372
           Q G      G + EA+  F   L                 +  +++              
Sbjct: 99  QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158

Query: 373 PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIG 432
              AI      L+    +  +    A  F        ++   K   K      EA   I 
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218

Query: 433 VNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC------------FYSQQYDMVVT 480
             ++     E++L   R  L++   +   F +                     +Y    +
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278

Query: 481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF 540
            +E  +      + A+        +          +++P  A+     +LQM   N    
Sbjct: 279 KYESVM--KTEPSIAEYTVR----SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332

Query: 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL 600
            + A      + YD  +  +E A     NEN   +   +     + +      S    Y 
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLK-----QSQKRDYY 385

Query: 601 FIQGISDTRLAIQCL----HLALSIDSSHGLSQNNLAVLEAREGHIERA 645
            I G+       + +     LAL     +  ++      E +   I  A
Sbjct: 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 22/215 (10%)

Query: 310 DLAVES-TKACEFRDW--WWKVQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIR 365
             A+    K  E   W    +    +C+   G  R+A     +A   +  + EAF ++  
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 366 VYIRLDQPIRAIDIGRNAL-------DCYPN-----EVTIMTEMARIFEGLNNMPMSVKY 413
           +Y +L     ++   R  L        C+ +     ++  + E A           +   
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279

Query: 414 YKLILKRDATCMEAIACIGVN----HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
           Y+ ++K + +  E               +++P  A+     +LQM   N     + A   
Sbjct: 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339

Query: 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504
              + YD  +  +E A     NEN   +   +   
Sbjct: 340 LIEEMYDEAIQDYETAQE--HNENDQQIREGLEKA 372

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 26/149 (17%)

Query: 529 LLQMGLY-----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 583
           L    LY     + E    L      + Q    ++ F  A+    + +    +Y  + V 
Sbjct: 13  LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATV- 69

Query: 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE 643
                               G   ++ A+  L   + +      ++     L  ++G ++
Sbjct: 70  ----------------FLAMG--KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111

Query: 644 RASTYLQAAAASSPYLYETHYNQAVISNL 672
            A    +    S+P   E    Q+ +   
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKS 140

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 29/273 (10%), Positives = 80/273 (29%), Gaps = 28/273 (10%)

Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
               + ++G  + A       +  +     A ++   + ++  +   A D  +  L   P
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 389 N---------------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV 433
           +               E+  +   A       +   ++ +   IL+      E       
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162

Query: 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
                 +P  A+   +   ++   N E F  ++   +    +++ ++     L   L+++
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQD 220

Query: 494 AADVWYNISHVAILNALSTSVYN----DQPEVALLFYRRLLQM----GLYNAELFNNLAL 545
               + +   V  LN L  S        +   A   Y  +++       Y       +  
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280

Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
           C    ++    +        L +  +  +   +
Sbjct: 281 CFSKDEKPVEAIRICSEV--LQMEPDNVNALKD 311

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.8 bits (182), Expect = 3e-14
 Identities = 36/333 (10%), Positives = 93/333 (27%), Gaps = 38/333 (11%)

Query: 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415
           D+E  + + +  +   Q   A+     A+D  P+        A +F  +     ++    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 416 LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL---------- 465
            ++        A    G       + + A   ++++L+      E               
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121

Query: 466 -----ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE 520
                AL  F    Y   +T  ++ L   +    A++    +               +P 
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILE--VCVWDAELRELRAEC--FIKE------GEPR 171

Query: 521 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 580
            A+   +   ++   N E F  ++   +    +++ ++     L   L+++    + +  
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYK 229

Query: 581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ----NNLAVLE 636
            V  + +    +       L   G      A       +  + S           +    
Sbjct: 230 QVKKLNKLIESAEE-----LIRDG--RYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282

Query: 637 AREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           +++     A           P       ++A  
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 40/243 (16%)

Query: 310 DLAVES-TKACEFRDW--WWKVQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIR 365
             A+    K  E   W    +    +C+   G  R+A     +A   +  + EAF ++  
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 196

Query: 366 VYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM 425
           +Y +L     ++   R  L                     +      +YK + K +    
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQ-----------------DHKRCFAHYKQVKKLNKLIE 239

Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNLALCCFYSQQYDMVVTC 481
            A          + +   A   Y  +++       Y       +  C    ++    +  
Sbjct: 240 SAEE-----LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294

Query: 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN 541
                 L +  +  +   + +              +  + A+  Y    +    + ++  
Sbjct: 295 CSEV--LQMEPDNVNALKDRAE--AYLIE------EMYDEAIQDYEAAQEHNENDQQIRE 344

Query: 542 NLA 544
            L 
Sbjct: 345 GLE 347

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 21/137 (15%)

Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
           + E    L      + Q    ++ F  A+    + +    +Y  + V             
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATV------------- 46

Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
                   G   ++ A+  L   +++      ++     L  ++G ++ A    +    S
Sbjct: 47  ----FLAMG--KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100

Query: 656 SPYLYETHYNQAVISNL 672
           +P   E    ++ +   
Sbjct: 101 NPSEQEEKEAESQLVKA 117

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 83.8 bits (207), Expect = 4e-17
 Identities = 44/353 (12%), Positives = 88/353 (24%), Gaps = 48/353 (13%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
            L       G    A +    A                   L Q   A      +L  + 
Sbjct: 56  LLAYLKHLKGQNEAALECLRKA-----------------EELIQQEHADQAEIRSLVTWG 98

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN---------- 438
           N        A ++  +  +     Y   +                               
Sbjct: 99  N-------YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG 151

Query: 439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV---VTCFERALSLALNENAA 495
           +Q E A + + + L+    N E  + LA+  +    +      +    +A+ L  N +  
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQ 209

Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
            +   ++    L         ++           L+      ++  + A       + D 
Sbjct: 210 YLKVLLA----LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265

Query: 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL 615
            +   ++AL      N A +   I            +   +  Y   + +     A+  L
Sbjct: 266 AIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323

Query: 616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP---YLYETHYN 665
             A   + +     + LA L A     E A  Y Q   +           H  
Sbjct: 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 42/369 (11%), Positives = 103/369 (27%), Gaps = 58/369 (15%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRM-----------IRVYIRLDQPIRAID 378
               Y+ +G + + Q   +   +      +  R+            R+    +Q  RA  
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPM---SVKYYKLILKRDATCMEAIACIGVN- 434
               AL+  P      + +A     L+N P    ++   +  ++ +         + +  
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 435 ---HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
                  ++           L+      ++  + A       + D  +   ++AL     
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--I 277

Query: 492 ENAADVWYNI-----SHVAILNALSTSVYNDQPEV------ALLFYRRLLQMGLYNAELF 540
            N A +   I     + V  +  L  +    + ++      A+   ++  +       + 
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337

Query: 541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL 600
           + LA     + QY+     F++  S  L   A  + +                      L
Sbjct: 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH---------------LRYGNFQL 382

Query: 601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 660
           +     D   AI      + I+      +     L+             +   + +    
Sbjct: 383 YQMKCEDK--AIHHFIEGVKINQKSREKEKMKDKLQK----------IAKMRLSKNGADS 430

Query: 661 ETHYNQAVI 669
           E  +  A +
Sbjct: 431 EALHVLAFL 439

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 38/270 (14%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
           L K         E ++    AL +     +      + Y R D+P +AI++ + AL+  P
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIG-VNHFYNDQPEVALLF 447
           N   +  ++               Y   + +        +     +          A+  
Sbjct: 279 NNAYLHCQIGCC------------YRAKVFQVMNLRENGMYGKRKLLELIGH----AVAH 322

Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN------- 500
            ++  +       + + LA     + QY+     F++  S  L   A  + +        
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382

Query: 501 ----ISHVAI---LNALSTSVYNDQPEVALLFYRRLLQMGLY----NAELFNNLALCCFY 549
                   AI   +  +  +  + + E      +++ +M L     ++E  + LA     
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442

Query: 550 SQQYDMVVTCFERALSLALNENAADVWYNI 579
           +++        ER L               
Sbjct: 443 NEKMQQADEDSERGLE--SGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 33/256 (12%), Positives = 70/256 (27%), Gaps = 39/256 (15%)

Query: 431 IGVNHFYNDQPEVALLFYRRLL---------QMGLYNAELFNNLALCCFYSQQYDMVVTC 481
           +        Q E AL   R+           Q  + +   + N A   ++  +   V   
Sbjct: 57  LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116

Query: 482 FERALSLALNENAADVWYNISHVAILNALSTSVYN---DQPEVALLFYRRLLQMGLYNAE 538
            ++     + E  +   Y I    +      +      +Q E A + + + L+    N E
Sbjct: 117 VDKVK--HVCEKFSSP-YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173

Query: 539 LFNNLALCCFYSQQYDMV---VTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
             + LA+  +    +      +    +A+ L  N +   +   ++               
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALK------------- 218

Query: 596 HTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653
               L              + +  AL           + A    R+   ++A   L+ A 
Sbjct: 219 ----LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274

Query: 654 ASSPYLYETHYNQAVI 669
              P     H      
Sbjct: 275 EYIPNNAYLHCQIGCC 290

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 33/227 (14%)

Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516
           + A + N LA       Q +  + C  +A  L + +  AD     S V   N      + 
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEEL-IQQEHADQAEIRSLVTWGNYAWVYYHM 107

Query: 517 DQPEVALLFYRRLLQM--------GLYNAELFNNL--ALCCFYSQQYDMVVTCFERALSL 566
            +     ++  ++  +         + + EL              Q +    CFE+AL  
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE- 166

Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
                  +    ++                     +     ++ AI  L  A+ ++  + 
Sbjct: 167 -KKPKNPEFTSGLAIA----------------SYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209

Query: 627 LSQNNLAV----LEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             +  LA+    +             ++ A   +P + +   + A  
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.5 bits (194), Expect = 9e-16
 Identities = 44/285 (15%), Positives = 83/285 (29%), Gaps = 32/285 (11%)

Query: 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
           E         ++P +V  ++  +++D   MEA   +G     N+Q  +A+   RR L++ 
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-------AILN 508
             N      LA+                  L        A +                  
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKR 186

Query: 509 ALSTSVYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
            L + + +         +   +++     + ++   L +    S +YD  V CF  ALS+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
               N   +W  +                    L     S+   A+     AL +   + 
Sbjct: 247 --RPNDYLLWNKLGAT-----------------LANGNQSE--EAVAAYRRALELQPGYI 285

Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671
            S+ NL +     G    A  +   A                +S 
Sbjct: 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 46/308 (14%), Positives = 86/308 (27%), Gaps = 49/308 (15%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
           + G      G +  A   F +A+ Q    +EA+  +       +Q + AI   R  L+  
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
           P+  T +  +A  F   +    + +  +          + +            P  A L 
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILR----------DWLRY---------TPAYAHLV 169

Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507
                  G         +         +  V   F  A+ L       DV   +    + 
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG--VLF 227

Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
           N         + + A+  +   L +   +  L+N L        Q +  V  + RA  L 
Sbjct: 228 NLS------GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA--LE 279

Query: 568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL 627
           L        YN+                        G    R A++    AL++      
Sbjct: 280 LQPGYIRSRYNLGIS-----------------CINLG--AHREAVEHFLEALNMQRKSRG 320

Query: 628 SQNNLAVL 635
            +     +
Sbjct: 321 PRGEGGAM 328

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 42/271 (15%), Positives = 78/271 (28%), Gaps = 41/271 (15%)

Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
           LG           A       L  +  +  A + +   +       +A +I R+ L   P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 389 N---------EVTIMTEMARIFEGLNNMPMSVKY------YKLILKRDATCMEAIA--CI 431
                     E      +      L ++     +      +   ++ D T ++      +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
           GV    + + + A+  +   L +   +  L+N L        Q +  V  + RAL   L 
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL--ELQ 281

Query: 492 ENAADVWYNISHV------------AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL 539
                  YN+                 L AL+      Q +          + G  +  +
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM-----QRKSRGPRG----EGGAMSENI 332

Query: 540 FNNLALCCFYSQQYDMVVTCFERALSLALNE 570
           ++ L L      Q D       R LS  L  
Sbjct: 333 WSTLRLALSMLGQSDAYGAADARDLSTLLTM 363

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 31/194 (15%), Positives = 52/194 (26%), Gaps = 31/194 (15%)

Query: 482 FERALSLALNENAADVWYNI----SHVAILNALSTSVYNDQPEVALLFYRRLLQM----G 533
           FERA   +  E+  D W  +      +A  +A +    +D  ++    Y +  Q      
Sbjct: 3   FERAK--SAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60

Query: 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593
           L +        L           V  FE A+    +    + W  +              
Sbjct: 61  LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTT----------- 107

Query: 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 653
                           LAI  L   L +   +  +   LAV    E    +A   L+   
Sbjct: 108 ------QAENEQEL--LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159

Query: 654 ASSPYLYETHYNQA 667
             +P          
Sbjct: 160 RYTPAYAHLVTPAE 173

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 37/216 (17%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
             + +  L L        +       +AL   ++ ++AD    ++ V          +  
Sbjct: 36  ARDAYIQLGLGYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVV----------FQT 83

Query: 518 Q--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENAA 573
           +  P++A   YR+ L     NA + NN     F  +Q  Y+        A    L    +
Sbjct: 84  EMEPKLADEEYRKALASDSRNARVLNNYGG--FLYEQKRYEEAYQRLLEASQDTLYPERS 141

Query: 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633
            V+ N+  V                            A +    +L ++ +       +A
Sbjct: 142 RVFENLGLV-----------------SLQMK--KPAQAKEYFEKSLRLNRNQPSVALEMA 182

Query: 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            L  +E     A  Y    A        +      +
Sbjct: 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 33/234 (14%)

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
           G+ +      E A +  R+ L++   +A+    LA+      +  +    + +AL+   +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--D 101

Query: 492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFY 549
              A V  N      L          + E A        Q  LY   + +F NL L    
Sbjct: 102 SRNARVLNNYG--GFLYEQ------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153

Query: 550 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR 609
            ++       FE++L L  N N   V   ++ +                 L+ +   +  
Sbjct: 154 MKKPAQAKEYFEKSLRL--NRNQPSVALEMADL-----------------LYKER--EYV 192

Query: 610 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 663
            A Q   L       +  S      L       + A++Y        P   E  
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 44/242 (18%), Positives = 69/242 (28%), Gaps = 47/242 (19%)

Query: 328 VQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
           +QLG  Y   G   +A+     AL    +  +A   +  V+    +P  A +  R AL  
Sbjct: 41  IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100

Query: 387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL 446
                            LNN                         G   +   + E A  
Sbjct: 101 DSRNA----------RVLNNY------------------------GGFLYEQKRYEEAYQ 126

Query: 447 FYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504
                 Q  LY   + +F NL L     ++       FE++L   LN N   V   ++  
Sbjct: 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMA-- 182

Query: 505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 564
            +L          +   A  +Y    Q G  NA             +  D   +   +  
Sbjct: 183 DLLYKE------REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236

Query: 565 SL 566
            L
Sbjct: 237 RL 238

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 30/211 (14%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
           + +   LA+     Q Y       E AL    +      W   + +     L        
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDAL--KSDPKNELAWLVRAEI--YQYL------KV 57

Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALC-CFYSQQYDMVVTCFERALSLALNENAADVWY 577
            + A   +R+ L +   +AE+ NN     C    +    +  F++AL+            
Sbjct: 58  NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
           N                        QG     LA   L  +L+       +   LA  + 
Sbjct: 118 NKGIC-----------------SAKQG--QFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158

Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAV 668
             G +  A  Y +   +    L         
Sbjct: 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 37/175 (21%), Positives = 54/175 (30%), Gaps = 4/175 (2%)

Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDC 386
            QL   Y      R+A      AL        A++    +Y  L    +A +  R AL  
Sbjct: 12  TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71

Query: 387 YPNEVTIMTEMARIFEG-LNNMPMSVKYYKLILKRD--ATCMEAIACIGVNHFYNDQPEV 443
            P+   I         G LN    S+ Y+   L      T   A    G+      Q  +
Sbjct: 72  KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131

Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 498
           A  + +R L         F  LA     + Q       F++  S      A D+ 
Sbjct: 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.9 bits (179), Expect = 7e-15
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 32/218 (14%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN- 516
           + +           + Q    V+ F + ++L  N +  +++Y  +        S      
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 517 -------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 569
                     + A LFY+ LLQ    N +     A       Q    +  +E+ L L   
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--E 118

Query: 570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ 629
            +       +                  +Y ++      +  ++  +  LS  +    ++
Sbjct: 119 ADNLAANIFLG-----------------NYYYLTA-EQEKKKLETDYKKLSSPTKMQYAR 160

Query: 630 NNLAVLEAREGHIERASTYLQAAAASSP--YLYETHYN 665
               + +      E+A   LQ      P     +T   
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 28/225 (12%), Positives = 64/225 (28%), Gaps = 27/225 (12%)

Query: 355 TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYY 414
             ++  ++ +   I   Q  +A+   R  +    +                     + Y+
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------------EMYYW 43

Query: 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474
             + K      +    + + +  N   + A LFY+ LLQ    N +     A       Q
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 475 YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534
               +  +E+ L   L  +       + +   L         +Q +  L    + L    
Sbjct: 104 EKDALRMYEKILQ--LEADNLAANIFLGNYYYLT-------AEQEKKKLETDYKKLSSPT 154

Query: 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 579
                     L   ++ +Y+      ++ +    +  A      I
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 27/193 (13%), Positives = 58/193 (30%), Gaps = 20/193 (10%)

Query: 328 VQLGKCYFSLGLIREAQQQFNSAL-----------------NQFTDIEAFIRMIRVYIRL 370
           +Q        G   +A   F   +                 N     +    +   Y + 
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC 430
               +A    +  L   PN V  +   A +         +++ Y+ IL+ +A  + A   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127

Query: 431 IGVNHFYN--DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
           +G N++Y   +Q +  L    + L              L   ++ +Y+      ++ +  
Sbjct: 128 LG-NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

Query: 489 ALNENAADVWYNI 501
             +  A      I
Sbjct: 187 FPSTEAQKTLDKI 199

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 5/134 (3%)

Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
           + +           + Q    V+ F + ++L  N +  +++Y  +        S  +   
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 655
             +Y   +   +   A       L    ++       A ++   G  + A    +     
Sbjct: 61  ALAY---KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

Query: 656 SPYLYETHYNQAVI 669
                  +      
Sbjct: 118 EADNLAANIFLGNY 131

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 34/263 (12%), Positives = 88/263 (33%), Gaps = 21/263 (7%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYI---RLDQPIRAIDIGRNAL 384
           +     F      EA + FN    +       + R    Y    + D   + I+   + +
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA 444
           +    +        +I        ++++ Y+  + RD T ++    IG   +      +A
Sbjct: 68  NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127

Query: 445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 504
           + +  + ++    + ++F  L    +Y+++Y    + F + L   L  N    +   +  
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRA-- 183

Query: 505 AILNALSTSVYNDQPEVALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMV 556
               A +    + +  +A  +Y +L+++             E    +A     ++     
Sbjct: 184 ---RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 557 VTCFERALSLALNENAADVWYNI 579
              ++    LAL+         +
Sbjct: 241 DAAWKNI--LALDPTNKKAIDGL 261

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 23/212 (10%), Positives = 57/212 (26%), Gaps = 28/212 (13%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
           N ++    A   F +  Y   +  F +  +     N+  ++   +              D
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRA-----VCYYELAKYD 54

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
             +  +  Y   +      +  F           Q  + +  ++ A+    +    D++ 
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYG 112

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
            I                     + +G  +  LAIQ +   +   ++       L     
Sbjct: 113 QIGSY-----------------FYNKG--NFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153

Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAVI 669
                 +A +         P +Y  +  +A  
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 31/289 (10%), Positives = 79/289 (27%), Gaps = 41/289 (14%)

Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY---Y 414
           +   R      + +    AI++         N   I    A  +  L    ++ K    Y
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 415 KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 474
              +             G       Q  +A+  Y+  +       +++  +    +    
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 475 YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL 534
           + + +   E+ +          V+Y +       A     YN +   A   + ++L++  
Sbjct: 124 FPLAIQYMEKQIR--PTTTDPKVFYELG-----QAYY---YNKEYVKADSSFVKVLELKP 173

Query: 535 YNAELFNNLALCCFY---SQQYDMVVTCFERALSL------ALNENAADVWYNISHVAII 585
                +   A          +  +    +E+ + +         +   +    I+     
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA----- 228

Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634
                        Y  I    D   A       L++D ++  + + L +
Sbjct: 229 ------------YYYTINR--DKVKADAAWKNILALDPTNKKAIDGLKM 263

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 27/256 (10%), Positives = 68/256 (26%), Gaps = 41/256 (16%)

Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 485
           +         F N+    A+  + +L      +  ++N  A+C +   +YD+     E  
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 486 LS-LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA 544
            S +   +  +  +           L       Q  +A+  Y+  +       +++  + 
Sbjct: 64  FSKVNATKAKSADFEYYG-----KILM---KKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115

Query: 545 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG 604
              +    + + +   E+ +          V+Y +                     +   
Sbjct: 116 SYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQA-----------------YYYNK 156

Query: 605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST----YLQA-------AA 653
             +   A       L +  +  +     A   A +    +       Y +         A
Sbjct: 157 --EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214

Query: 654 ASSPYLYETHYNQAVI 669
                L E +   A  
Sbjct: 215 KYKDELIEANEYIAYY 230

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 25/268 (9%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
           + G      G +        +A+ Q   D EA+  +       +    AI   +  L+  
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
           PN +  +  +A  +   ++   + +  K  +K++      +     +     +   + + 
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189

Query: 448 YRRL------------LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 495
              L                + + +L   L +    S +++  +  F  AL++       
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDY 247

Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
            +W  +        L+     D+ E A+  Y R L++         NL + C     Y  
Sbjct: 248 SLWNRLG-----ATLANG---DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299

Query: 556 VVTCFERALSLALNENAADVWYNISHVA 583
            V+ F  ALS  L   + +         
Sbjct: 300 AVSNFLTALS--LQRKSRNQQQVPHPAI 325

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 38/303 (12%), Positives = 88/303 (29%), Gaps = 30/303 (9%)

Query: 369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI 428
            +    +         +    +     E         ++P+++ + +  + +D    EA 
Sbjct: 46  TVSASEKGYYF---HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAW 102

Query: 429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
             +G+    N+  + A++  +R L++   N +    LA+    +          +  +  
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK- 161

Query: 489 ALNENAADVWYNISHV-AILNALSTSVYN-DQPEVALLFYRRLLQM--GLYNAELFNNLA 544
             N     +  N      +   +S S  +    E     Y         + + +L   L 
Sbjct: 162 -QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220

Query: 545 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG 604
           +    S +++  +  F  AL+  +      +W  +                    L    
Sbjct: 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGAT-----------------LANGD 261

Query: 605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 664
            S+   A++    AL I      S+ NL +     G    A +    A +          
Sbjct: 262 RSE--EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319

Query: 665 NQA 667
              
Sbjct: 320 VPH 322

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 40/315 (12%), Positives = 79/315 (25%), Gaps = 51/315 (16%)

Query: 375 RAIDIGRNALDCYPNEVTIMTEMARI--------FEGLNNMPMSVKYYKLILKRDATCME 426
           RA     +  + +        EMAR          +    +  S K Y    +       
Sbjct: 7   RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66

Query: 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL 486
                G+         V +LF    +     +AE +  L +    ++     +   +R L
Sbjct: 67  GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126

Query: 487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 546
            L    N       ++      + + + +      A    +  ++       L  N    
Sbjct: 127 EL--QPNNLKALMALA-----VSYTNTSHQQD---ACEALKNWIKQNPKYKYLVKNKKGS 176

Query: 547 CFYSQQYDM----------VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH 596
              +++             V   +  A     +    D+   +  +              
Sbjct: 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL-------------- 222

Query: 597 TSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654
                + G        AI   + AL++        N L    A     E A      A  
Sbjct: 223 ---FHLSG----EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 655 SSPYLYETHYNQAVI 669
             P    + YN  + 
Sbjct: 276 IQPGFIRSRYNLGIS 290

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 20/198 (10%), Positives = 47/198 (23%), Gaps = 23/198 (11%)

Query: 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ 531
           + +++      E        +     W  ++    ++    +        +   Y    +
Sbjct: 2   AMEFERAKAAVESDT--EFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTE 59

Query: 532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPF 591
               +        L         + +   E A+    +   A+ W  +            
Sbjct: 60  NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAI--LQDPGDAEAWQFLGIT--------- 108

Query: 592 SFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651
                              AI  L   L +  ++  +   LAV      H + A   L+ 
Sbjct: 109 --------QAENENEQ--AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158

Query: 652 AAASSPYLYETHYNQAVI 669
               +P       N+   
Sbjct: 159 WIKQNPKYKYLVKNKKGS 176

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 21/227 (9%)

Query: 330 LGKCYFSLGLIREAQQQFNSAL-----------NQFTDIEAFIRMIRVYIRLDQPIRAID 378
           L   Y +    ++A +   + +           N+        RM +  +         +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 379 IGRNALDCYPNEVTIMTEMAR--IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436
           +   A     + +    +     +F        ++  +   L            +G    
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258

Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
             D+ E A+  Y R L++         NL + C     Y   V+ F  ALS  L   + +
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS--LQRKSRN 316

Query: 497 VWYNISHVAILNALST----SVYNDQPEVALLFYRRLLQMGLYNAEL 539
                      N  +         DQPE+        L   +     
Sbjct: 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD--VLLRAF 361

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 31/228 (13%)

Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
           E A   + + ++    +A  + N A       + +  +  +++AL   L+ +AA  +Y  
Sbjct: 40  EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGA 97

Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
                 N        +  + A   + + L+ G+ N +LF  L       +Q  + +   +
Sbjct: 98  G-----NVYV---VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

Query: 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
           RA+   LNEN  +  +                      L  +G+ D   A+         
Sbjct: 150 RAVE--LNENDTEARFQFGMC-----------------LANEGMLD--EALSQFAAVTEQ 188

Query: 622 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           D  H  +  N  V  A + + E+A   L  A    P      + + ++
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 31/213 (14%)

Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516
             +               Y+     F +A+    N+  A  + N +   +L+++      
Sbjct: 21  MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFA--NLLSSV------ 70

Query: 517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 576
           ++ E AL FY + L++    A  +          + Y      FE+AL         D++
Sbjct: 71  NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLF 128

Query: 577 YNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 636
           Y +  V                 L        +LA+  L  A+ ++ +   ++    +  
Sbjct: 129 YMLGTV-----------------LVKLE--QPKLALPYLQRAVELNENDTEARFQFGMCL 169

Query: 637 AREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           A EG ++ A +   A     P   +  YN  V 
Sbjct: 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 27/188 (14%)

Query: 482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN 541
              +    L    + +         +   S        E A   + + ++    +A  + 
Sbjct: 8   HHHSS--GLVPRGSHMASMT-GGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601
           N A       + +  +  +++AL L  + +AA  +Y   +V                   
Sbjct: 62  NFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNV-----------------YV 102

Query: 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE 661
           ++     + A      AL     +G     L  +  +    + A  YLQ A   +    E
Sbjct: 103 VKE--MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160

Query: 662 THYNQAVI 669
             +   + 
Sbjct: 161 ARFQFGMC 168

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 48/309 (15%), Positives = 97/309 (31%), Gaps = 35/309 (11%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
           + G     L  + EA   F +         EA+  +       ++   AI    +A    
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRD-----ATCMEAIACIGVNHFYN-- 438
           P ++ +   +A      +N   ++   +  L+ +       +  ++A   I   +  +  
Sbjct: 86  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145

Query: 439 ------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 492
                 ++           L+M   +A+L  +L +    S  YD       RA+   L  
Sbjct: 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRP 203

Query: 493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ 552
           + A +W  +        L+     ++P+ AL  Y R L +      +  N+A+      Q
Sbjct: 204 DDAQLWNKLG-----ATLANG---NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255

Query: 553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI 612
           YD+      RA+   +           S  A     +   +      L +    D  L  
Sbjct: 256 YDLAAKQLVRAIY--MQVGGTTPTGEASREA-----TRSMWDFFRMLLNVMNRPD--LVE 306

Query: 613 QCLHLALSI 621
                 +  
Sbjct: 307 LTYAQNVEP 315

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 36/279 (12%), Positives = 79/279 (28%), Gaps = 30/279 (10%)

Query: 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
           E       L N+  +   ++ + +      EA   +G+    N++  +A++       + 
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85

Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN-------ISHVAILN 508
             +  +   LA+        +  +      L          +          I  + + +
Sbjct: 86  PKDIAVHAALAVSHTNEHNANAALASLRAWL--LSQPQYEQLGSVNLQADVDIDDLNVQS 143

Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
                   ++           L+M   +A+L  +L +    S  YD       RA+ L  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-- 201

Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
             + A +W  +                    L          A+   + AL I+  +   
Sbjct: 202 RPDDAQLWNKLGAT-----------------LANGNRPQ--EALDAYNRALDINPGYVRV 242

Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
             N+AV  +     + A+  L  A              +
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 21/208 (10%), Positives = 50/208 (24%), Gaps = 16/208 (7%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
             E      L              FE            + W ++         +    N+
Sbjct: 20  YHENPMEEGLSMLKLANLAEAALAFEAVC--QAAPEREEAWRSLG-----LTQA---ENE 69

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
           +  +A++       +   +  +   LA+        +  +      L          +  
Sbjct: 70  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL--LSQPQYEQLGS 127

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
                    +    +  +   +               LH AL ++ +      +L VL  
Sbjct: 128 VNL--QADVDIDDLNVQSEDFFFAAPNEYRE--CRTLLHAALEMNPNDAQLHASLGVLYN 183

Query: 638 REGHIERASTYLQAAAASSPYLYETHYN 665
              + + A+  L+ A    P   +    
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNK 211

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 42/275 (15%), Positives = 73/275 (26%), Gaps = 38/275 (13%)

Query: 406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465
           +M  +   Y           E     G++         A L +  + Q      E + +L
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYN--ISHVAILN---ALSTSVYND--- 517
            L    +++  + +     A    L+     V     +SH    N   AL++        
Sbjct: 62  GLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALAS--LRAWLL 117

Query: 518 -QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW 576
            QP+   L    L      +     +         +Y    T    A  L +N N A + 
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA--LEMNPNDAQLH 175

Query: 577 YNISHVAIITECSPFSFSTHTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNLAV 634
            ++  +                   +          A   L  A+ +        N L  
Sbjct: 176 ASLGVL-----------------YNLSN----NYDSAAANLRRAVELRPDDAQLWNKLGA 214

Query: 635 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             A     + A      A   +P      YN AV 
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 29/340 (8%), Positives = 76/340 (22%), Gaps = 39/340 (11%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
             S    ++A +     L             + A          L+   R + +   A  
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             P +V  +       + L  +   +             + AIA  G      +  +  L
Sbjct: 135 LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 194

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
               +   +         +        +    ++    +A    L         +  +  
Sbjct: 195 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIAS--NGG 250

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
              AL      +  +  L    +   +         + +      +    ++    +A  
Sbjct: 251 GKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH- 303

Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
             L         +                        Q +   +  +  L  A  +    
Sbjct: 304 -GLTPQQVVAIASNGGG-------------------KQALETVQRLLPVLCQAHGLTPQQ 343

Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 665
            ++  +    +     ++R    L  A   +P       +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 28/341 (8%), Positives = 74/341 (21%), Gaps = 32/341 (9%)

Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
                 +L  ++        A       + A          L+   R + +   A    P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
            +V  +       + L  +   +             + AIA  G      +  +  L   
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
            +   +         + +      +    ++    +A    L         +        
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNG--GGKQ 321

Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
           AL      +  +  L    +   +         +        +    ++    +A    L
Sbjct: 322 AL------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH--GL 373

Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
                    +                        Q +   +  +  L  A  +     ++
Sbjct: 374 TPEQVVAIASNGGGK-------------------QALETVQRLLPVLCQAHGLTPEQVVA 414

Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             +    +     ++R    L  A   +P       +    
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 30/339 (8%), Positives = 74/339 (21%), Gaps = 37/339 (10%)

Query: 337 LGLIREAQQQFNSALNQFT------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE 390
                EA   + +AL           + A          L+   R + +   A    P +
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

Query: 391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR 450
           V  +       + L  +   +             + AIA         +  +  L    +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 451 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNAL 510
              +         +        +    ++    +A    L         +        AL
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASNGGG--KQAL 221

Query: 511 STSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570
                 +  +  L    +   +         +        +    ++    +A    L  
Sbjct: 222 ------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTP 273

Query: 571 NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQN 630
                  + S                      Q +   +  +  L  A  +     ++  
Sbjct: 274 QQVVAIASNSGGK-------------------QALETVQRLLPVLCQAHGLTPQQVVAIA 314

Query: 631 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           +    +     ++R    L  A   +P       +    
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 27/329 (8%), Positives = 69/329 (20%), Gaps = 32/329 (9%)

Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
            G    +L  ++        A       + A          L+   R + +   A    P
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
            +V  +       + L  +   +             + AIA         +  +  L   
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
            +   +         +        +    ++    +A    L         +        
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHD--GGKQ 355

Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
           AL      +  +  L    +   +         +        +    ++    +A    L
Sbjct: 356 AL------ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GL 407

Query: 569 NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS 628
                    +                        Q +   +  +  L  A  +     ++
Sbjct: 408 TPEQVVAIASHDGGK-------------------QALETVQRLLPVLCQAHGLTPQQVVA 448

Query: 629 QNNLAVLEAREGHIERASTYLQAAAASSP 657
             +          I    +    A A+  
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 28/315 (8%), Positives = 70/315 (22%), Gaps = 40/315 (12%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
             S G  ++A +     L             + A          L+   R + +   A  
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             P +V  +   +   + L  +   +             + AIA  G      +  +  L
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 330

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
               +   +         +        +    ++    +A    L         +     
Sbjct: 331 PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA--HGLTPEQVVAIASNGGG- 387

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
              AL      +  +  L    +   +         +        +    ++    +A  
Sbjct: 388 -KQAL------ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQA-- 438

Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS- 624
             L         +                          +      +     AL+  ++ 
Sbjct: 439 HGLTPQQVVAIASNGGGR-------------------PALESIVAQLSRPDPALAALTND 479

Query: 625 HGLSQNNLAVLEARE 639
           H ++   L    A +
Sbjct: 480 HLVALACLGGRPALD 494

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 28/247 (11%), Positives = 67/247 (27%), Gaps = 33/247 (13%)

Query: 440 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 495
           Q EV L    ++L          A+L     +         +    F +AL  A+  +  
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMP 77

Query: 496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM 555
           +V+  +        L+ +      + A   +  +L++         N  +  +Y  +  +
Sbjct: 78  EVFNYLG-----IYLTQA---GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129

Query: 556 VVTCFERALSLALNENAADVWYN--------------ISHVAIITECSPFSFSTHTSYLF 601
                        + N                             +     +  +    +
Sbjct: 130 AQDDLLAFY--QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187

Query: 602 IQGISDTRL---AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 658
           +  IS+  L            S+      +   L       G ++ A+   + A A++ +
Sbjct: 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247

Query: 659 LYETHYN 665
            +  H  
Sbjct: 248 NFVEHRY 254

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 19/205 (9%), Positives = 49/205 (23%), Gaps = 35/205 (17%)

Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
           A   +  +L++         N  +  +Y  +  +             + N          
Sbjct: 96  AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY--QDDPNDPFRSLW--- 150

Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN--LALCCFYSQQ-YDMVVTCF 560
                 L  +      + A    ++  +        +N     L     Q   + +    
Sbjct: 151 ------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 204

Query: 561 ERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS 620
               SL   E+ ++  + +                        G  D   A     LA++
Sbjct: 205 TDNTSL--AEHLSETNFYLGKY-----------------YLSLG--DLDSATALFKLAVA 243

Query: 621 IDSSHGLSQNNLAVLEAREGHIERA 645
            +  + +      +  +  G  +  
Sbjct: 244 NNVHNFVEHRYALLELSLLGQDQDD 268

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 25/156 (16%)

Query: 518 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
           Q EV L    ++L          A+L     +         +    F +AL  A+  +  
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMP 77

Query: 574 DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA 633
           +V+  +                   YL   G  D   A +     L +D ++  +  N  
Sbjct: 78  EVFNYLG-----------------IYLTQAGNFD--AAYEAFDSVLELDPTYNYAHLNRG 118

Query: 634 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
           +     G  + A   L A     P          + 
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 34/250 (13%), Positives = 58/250 (23%), Gaps = 45/250 (18%)

Query: 330 LGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
            G  Y SLGL   A+  F+ AL  +    E F  +     +      A +   + L+  P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
                            N                         G+  +Y  + ++A    
Sbjct: 109 TYN----------YAHLNR------------------------GIALYYGGRDKLAQDDL 134

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN 508
               Q    +      L L               ++    +  E      +NI       
Sbjct: 135 LAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWG---WNIVE----F 186

Query: 509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 568
            L         E           +  + +E    L          D     F+ A  +A 
Sbjct: 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA--VAN 244

Query: 569 NENAADVWYN 578
           N +       
Sbjct: 245 NVHNFVEHRY 254

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 31/260 (11%), Positives = 75/260 (28%), Gaps = 28/260 (10%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI-------EAFIRMIRVYIRLDQPIRAIDIGRN 382
            G   F      EA   +  A  +   +       E   ++   Y  + Q   ++     
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166

Query: 383 ALDCYPNEVTIMTEMAR-------IFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC- 430
           ALD Y N         +        ++   +   ++ + +  L            AI+  
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226

Query: 431 -IGVNHFYNDQPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFER 484
            I  ++  +   ++A+  +++  ++          ++   L+     + Q        E 
Sbjct: 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286

Query: 485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLA 544
            L      +     +       L A+     +++    LL Y     +  Y      + A
Sbjct: 287 GLDHITARSHK---FYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343

Query: 545 LCCFYSQQYDMVVTCFERAL 564
                S  ++     + + L
Sbjct: 344 AVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 44/346 (12%), Positives = 95/346 (27%), Gaps = 84/346 (24%)

Query: 342 EAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401
           +A+            +E    ++  Y  +    + +         Y N  T+   +  I 
Sbjct: 30  DAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89

Query: 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN--- 458
                +   +KYY L  +            G+  F   +   A+ +YR   +   +    
Sbjct: 90  TPQKKLTGLLKYYSLFFR------------GMYEFDQKEYVEAIGYYREAEKELPFVSDD 137

Query: 459 ---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515
              AE    +A   ++ +Q  + +    +AL +                           
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------------------- 170

Query: 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA--- 572
                     Y+      +   +    +A      + YD  +   E AL LA++      
Sbjct: 171 ----------YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220

Query: 573 -ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-----DSSHG 626
            A    NI++                 Y    G  D ++A++    A  +          
Sbjct: 221 IAISLLNIANS----------------Y-DRSG--DDQMAVEHFQKAAKVSREKVPDLLP 261

Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672
                L+    + G  ++A  +++             Y + +   L
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFL 306

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 42/350 (12%), Positives = 100/350 (28%), Gaps = 83/350 (23%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI---RVYIRLDQPIRAIDIGRNALD 385
           + GK Y +   + E  +   +   + T +  +  +           + + AI   R A  
Sbjct: 70  EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129

Query: 386 CY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 439
                     +     ++A  +  +    +S+ +                          
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ----------------------- 166

Query: 440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----A 495
               AL  Y+      +   +    +A      + YD  +   E AL LA++       A
Sbjct: 167 ----ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222

Query: 496 DVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM-----GLYNAELFNNLALCCF 548
               NI+          + Y+     ++A+  +++  ++          ++   L+    
Sbjct: 223 ISLLNIA----------NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272

Query: 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608
            + Q        E  L      +      +  +  +              +LF+Q +   
Sbjct: 273 KAGQTQKAFQFIEEGLDHITARS------HKFYKEL--------------FLFLQAVYKE 312

Query: 609 RLAIQCLHLALSIDSSHGL------SQNNLAVLEAREGHIERASTYLQAA 652
            +  + +H  LS      L         + A +     H E+A+ + +  
Sbjct: 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 30/263 (11%), Positives = 78/263 (29%), Gaps = 29/263 (11%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDI-------EAFIRMIRVYIRLDQPIRAIDIGRN 382
            G           A + F  A ++   +       E F +M   Y  + Q   ++D  R 
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

Query: 383 ALDCY-------PNEVTIMTEMARIFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC- 430
           A + Y          +   +  A  F  L     ++ +++             +      
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228

Query: 431 -IGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFE 483
            IG+      Q E A+ +++R + +   +       + +  +    +   + D       
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL 543
           + ++ +     A     +S    L +L  S  +++       +     +     +   ++
Sbjct: 289 KGMAYS---QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345

Query: 544 ALCCFYSQQYDMVVTCFERALSL 566
           A      + +      F +   +
Sbjct: 346 AKYYHERKNFQKASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 44/344 (12%), Positives = 105/344 (30%), Gaps = 57/344 (16%)

Query: 334 YFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTI 393
           Y+SL   R           +   IE   R+  + + +D+    +      L+ Y N    
Sbjct: 54  YYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT---GLLEYYFNFF-- 108

Query: 394 MTEMARIFEGLNNMPMSVKYYKLILKRDAT----CMEAIAC--IGVNHFYNDQPEVALLF 447
                           ++K++K    +         +A     +  +++Y  Q   ++ +
Sbjct: 109 ---RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165

Query: 448 YRRLLQM----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--AD 496
            R+  ++      YN    +  +  A      +QY+  ++ F++A S+A    +      
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225

Query: 497 VWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYN------AELFNNLALCCF 548
             YNI              N Q   E A+ +++R + +   +       + +  +    +
Sbjct: 226 TLYNIGL----------CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275

Query: 549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT 608
              + D       + ++ +     A     +S    +             YL        
Sbjct: 276 KLGKIDKAHEYHSKGMAYS---QKAGDVIYLSEFEFLKSL----------YLSGPDEEAI 322

Query: 609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 652
           +     L   +        +  ++A       + ++AS Y    
Sbjct: 323 QGFFDFLESKMLYADLEDFA-IDVAKYYHERKNFQKASAYFLKV 365

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 7/174 (4%)

Query: 372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACI 431
              R +   R A+   P +      +A    G+ +        +  L       EA+A +
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
           G   +   +   A +  ++       +  +   L      + Q +     + RA    L 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQLL 121

Query: 492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
                +        +LN           +V     R  +  G+   E F  L+ 
Sbjct: 122 PEEPYITAQ-----LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 19/170 (11%), Positives = 44/170 (25%), Gaps = 11/170 (6%)

Query: 406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 465
           + P  +   +  ++       A   +              +  +R L +   + E    L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 466 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF 525
               +  Q++       ++A           +   + H   L          Q E A   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQAS--DAAPEHPGIALWLGHA--LEDA------GQAEAAAAA 113

Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 575
           Y R  Q+      +   L         +  +     + +  A+ +    V
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ-VRAAVAQGVGAV 162

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 16/178 (8%), Positives = 33/178 (18%), Gaps = 31/178 (17%)

Query: 474 QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533
                +     A+           W  ++     +A              +  +R L + 
Sbjct: 4   DGPRELLQLRAAV--RHRPQDFVAWLMLA-----DAELGM---GDTTAGEMAVQRGLALH 53

Query: 534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593
             + E    L    +  Q++       ++A           +   + H            
Sbjct: 54  PGHPEAVARLGRVRWTQQRHAEAAVLLQQA--SDAAPEHPGIALWLGHA----------- 100

Query: 594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 651
                 L   G      A      A  +          L     R             
Sbjct: 101 ------LEDAG--QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 20/148 (13%), Positives = 29/148 (19%), Gaps = 21/148 (14%)

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
                LL  R  ++    +   +  LA                +R L  AL+    +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVA 61

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
            +  V                            A   L  A      H      L     
Sbjct: 62  RLGRV-------------------RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE 102

Query: 638 REGHIERASTYLQAAAASSPYLYETHYN 665
             G  E A+     A    P        
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQ 130

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 2/157 (1%)

Query: 342 EAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI 400
               Q  +A+     D  A++ +    + +          +  L  +P     +  + R+
Sbjct: 7   RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66

Query: 401 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE 460
                    +    +               +G       Q E A   Y R  Q+      
Sbjct: 67  RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126

Query: 461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 497
           +   L         +  +     + +  A+ +    V
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQ-VRAAVAQGVGAV 162

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 21/118 (17%)

Query: 552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA 611
                +     A+           W  ++                       G+ DT   
Sbjct: 4   DGPRELLQLRAAV--RHRPQDFVAWLMLADAE-------------------LGMGDTTAG 42

Query: 612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
              +   L++   H  +   L  +   +     A+  LQ A+ ++P            
Sbjct: 43  EMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 30/247 (12%), Positives = 73/247 (29%), Gaps = 33/247 (13%)

Query: 410 SVKYYKLILKRDATCMEAIACIGVN-HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 468
           +++  + +L       +A+   G   +   D    A +   + +++     E +N L   
Sbjct: 87  TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146

Query: 469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AILNALSTSVYNDQPEVALLFYR 527
            +         TCF  AL+   N        N+S V   L   S   ++     ++   +
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 528 RLLQMGLYNAELFNNLALCCFYS--------QQYDMVVTCFERALSL-ALNENAADVWYN 578
             +QM + +   +  L               +     ++ + +A  +     +  D+  N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638
            + +                    +       A++    A ++D +    Q     L   
Sbjct: 264 RATL-----------------HKYEE--SYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304

Query: 639 EGHIERA 645
              +   
Sbjct: 305 LSRLTSL 311

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 36/261 (13%), Positives = 65/261 (24%), Gaps = 45/261 (17%)

Query: 426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM-VVTCFER 484
                        ++ E  L     +L      A+           +  Y         +
Sbjct: 69  SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128

Query: 485 ALSLALNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNN 542
           A+ L       + W  +  V          Y  +     A   +   L     N     N
Sbjct: 129 AVKL--EPELVEAWNQLGEV----------YWKKGDVTSAHTCFSGALTHCK-NKVSLQN 175

Query: 543 LALCC---------FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF 593
           L++            +S+     V   + A+ + + +     WY + +            
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGN------------ 221

Query: 594 STHTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQ---NNLAVLEAREGHIERASTY 648
             + S  F  G +      A+     A  +D     +     N A L   E     A   
Sbjct: 222 -AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280

Query: 649 LQAAAASSPYLYETHYNQAVI 669
              AAA  P   E    +  +
Sbjct: 281 FSQAAALDPAWPEPQQREQQL 301

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 20/253 (7%), Positives = 69/253 (27%), Gaps = 27/253 (10%)

Query: 342 EAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIR-AIDIGRNALDCYPNEVTIMTEMAR 399
           +  QQ    L       +A +   +           A  +   A+   P  V    ++  
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145

Query: 400 IFEGLNNMPMSVKYYK--LILKRDATCMEAIACI------GVNHFYNDQPEVALLFYRRL 451
           ++    ++  +   +   L   ++   ++ ++ +           ++     ++   +  
Sbjct: 146 VYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205

Query: 452 LQMGLYNAELFNNLALCCFYS--------QQYDMVVTCFERALSL-ALNENAADVWYNIS 502
           +QM + +   +  L               +     ++ + +A  +     +  D+  N +
Sbjct: 206 VQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265

Query: 503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 562
                       Y +    AL  + +   +     E          +  +   ++    +
Sbjct: 266 -----TLHK---YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

Query: 563 ALSLALNENAADV 575
                L      +
Sbjct: 318 TKPKKLQSMLGSL 330

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 64.8 bits (157), Expect = 5e-11
 Identities = 30/193 (15%), Positives = 72/193 (37%), Gaps = 10/193 (5%)

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
           P     +  +A I     N+  +V+ Y+  L+       A + +        + + AL+ 
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507
           Y+  +++    A+ ++N+       Q     + C+ RA  + +N   AD   N++ +   
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA--IQINPAFADAHSNLASI--H 121

Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                         A+  YR  L++     + + NLA C      +       ++ +S+ 
Sbjct: 122 KDS------GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

Query: 568 LNENAADVWYNIS 580
            ++   +   ++ 
Sbjct: 176 ADQLEKNRLPSVH 188

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.1 bits (150), Expect = 4e-10
 Identities = 44/277 (15%), Positives = 96/277 (34%), Gaps = 14/277 (5%)

Query: 356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK 415
             ++   +  +         A+ + R AL+ +P      + +A + +    +  ++ +YK
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 416 LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 475
             ++   T  +A + +G         + AL  Y R +Q+    A+  +NLA     S   
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127

Query: 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535
              +  +  A  L L  +  D + N++H   L  +      D+        ++L+ +   
Sbjct: 128 PEAIASYRTA--LKLKPDFPDAYCNLAHC--LQIVCDWTDYDE------RMKKLVSIVAD 177

Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST 595
             E     ++   +S  Y +    F +A++     +       I+ +       P     
Sbjct: 178 QLEKNRLPSVHPHHSMLYPL-SHGFRKAIA---ERHGNLCLDKINVLHKPPYEHPKDLKL 233

Query: 596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNL 632
               L +  +S         HL  SI   H   +  +
Sbjct: 234 SDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEV 270

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 21/152 (13%)

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
             E A+  YR+ L++    A   +NLA       +    +  ++ A+   ++   AD + 
Sbjct: 24  NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
           N+ +                    ++ + D + A+QC   A+ I+ +   + +NLA +  
Sbjct: 82  NMGNT-------------------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122

Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             G+I  A    + A    P   + + N A  
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 1/174 (0%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
           L       G I EA + +  AL  F     A   +  V  +  +   A+   + A+   P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
                 + M    + + ++  +++ Y   ++ +    +A + +   H  +     A+  Y
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 502
           R  L++     + + NLA C      +       ++ +S+  ++   +   ++ 
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.9 bits (139), Expect = 8e-09
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 31/211 (14%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
           +A+  NNLA         +  V  + +AL   +    A    N++     + L       
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLA-----SVLQQ---QG 57

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
           + + AL+ Y+  +++    A+ ++N+       Q     + C+ RA+   +N   AD   
Sbjct: 58  KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI--QINPAFADAHS 115

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
           N++ +                     G  +   AI     AL +      +  NLA    
Sbjct: 116 NLASI-----------------HKDSG--NIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAV 668
                      ++   +      E +   +V
Sbjct: 157 IVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 32/286 (11%), Positives = 78/286 (27%), Gaps = 5/286 (1%)

Query: 318 ACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRA 376
                       L       G ++EA   +  A+    T  +A+  M      +     A
Sbjct: 37  EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96

Query: 377 IDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF 436
           +     A+   P      + +A I +   N+P ++  Y+  LK      +A   +     
Sbjct: 97  LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
                       ++L+ +     E     ++   +S  Y +    F +A++        D
Sbjct: 157 IVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPL-SHGFRKAIAERHGNLCLD 215

Query: 497 VWYNISHVAILNALSTSVYNDQPEVALLFY-RRLLQMGLYNAELFNNLALCCFYSQQYDM 555
               +      +     + + +  V  +               +        F    Y +
Sbjct: 216 KINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYAL 275

Query: 556 VVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601
             +  +           A+ + ++S +    + +          L 
Sbjct: 276 --SPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILV 319

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 27/218 (12%)

Query: 431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 490
           +GV  +   + + AL  + R L+    + E    LA         +  +   +  +  A 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--AR 68

Query: 491 NENAADVWYNISHV---AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
                  +  +S         A          E AL   +   ++    A L     L  
Sbjct: 69  TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVY 128

Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
               + D      ++AL+L   E+  ++   ++ +                     G  D
Sbjct: 129 ALLGERDKAEASLKQALAL---EDTPEIRSALAEL-----------------YLSMGRLD 168

Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
              A+     AL         +   A     +G  E A
Sbjct: 169 --EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 43/223 (19%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
             +    L +  +   +YD  +T FERA  L  N    +  Y ++       L       
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERA--LKENPQDPEALYWLA--RTQLKL------G 53

Query: 518 QPEVALLFYRRLLQ-----------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
               AL   + L+            +      L+             +  ++  + A   
Sbjct: 54  LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA--E 111

Query: 567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG 626
            +N   A +      V                   + G  +   A   L  AL+++ +  
Sbjct: 112 RVNPRYAPLHLQRGLV-----------------YALLG--ERDKAEASLKQALALEDTP- 151

Query: 627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             ++ LA L    G ++ A      A   +P   +     A  
Sbjct: 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 34/242 (14%), Positives = 78/242 (32%), Gaps = 35/242 (14%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
           +LG   ++LG    A   F  AL +   D EA   + R  ++L     A++ G+  +   
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 447
           P  +     ++  +  L       +  K  L+      +A++                  
Sbjct: 70  PRYLGGYMVLSEAYVALYRQAEDRERGKGYLE------QALSV----------------- 106

Query: 448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIL 507
            +   ++    A L     L      + D      ++AL+L   E+  ++   ++ +   
Sbjct: 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL---EDTPEIRSALAEL--Y 161

Query: 508 NALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 567
            ++       + + AL  Y + L+    + +L    A       + +             
Sbjct: 162 LSM------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

Query: 568 LN 569
            +
Sbjct: 216 HH 217

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 40/308 (12%), Positives = 85/308 (27%), Gaps = 62/308 (20%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI-----RVYIRLDQPIRAIDIGRNA 383
             G+   + G  R     F +A+   T+    +  I       Y  L    +A+   ++ 
Sbjct: 53  LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112

Query: 384 LDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRD-------ATC---- 424
           L           E      +    + +     +    +  L L R               
Sbjct: 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172

Query: 425 ----------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYN----AELFNNLALC 468
                     +             +    A+ FY+  L++   L +         NL   
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT 232

Query: 469 CFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYNDQ--PEVALL 524
            +    +   +   +  L +A    + AA            + L    +      E A  
Sbjct: 233 YYLLGDFQAAIEHHQERLRIAREFGDRAA-------ERRANSNLGN-SHIFLGQFEDAAE 284

Query: 525 FYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--AD 574
            Y+R L +   L      A+   +L        +++  +    R L++A  L +    A 
Sbjct: 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344

Query: 575 VWYNISHV 582
             +++ + 
Sbjct: 345 ACWSLGNA 352

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 51/375 (13%), Positives = 107/375 (28%), Gaps = 79/375 (21%)

Query: 334 YFSLGLIREAQQQFNSALNQFTDIE-------AFIRMIRVYIRLDQPIRAIDIGRNALDC 386
              LG         +    Q +  +                         +   + A+  
Sbjct: 18  SLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQA 77

Query: 387 Y----PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDAT--CMEAIAC--IGVNHF 436
                     I +++   +  L +   +++Y+K  L L +       EA +   +G    
Sbjct: 78  GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137

Query: 437 YNDQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDM----------VVT 480
              + + A +   R L +   L +         NL        ++            V  
Sbjct: 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197

Query: 481 CFERAL-----SLALNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM- 532
              RA+     +L L  +  D     +       L  + Y      + A+  ++  L++ 
Sbjct: 198 ALTRAVEFYQENLKLMRDLGD---RGAQGRACGNLG-NTYYLLGDFQAAIEHHQERLRIA 253

Query: 533 -GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVA 583
               +        +NL     +  Q++     ++R L+LA  L E    A   Y++ +  
Sbjct: 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT- 312

Query: 584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEA 637
                             +    +   AI+  +  L+I    G       +  +L    +
Sbjct: 313 ----------------YTLLH--EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS 354

Query: 638 REGHIERASTYLQAA 652
             G  ERA  Y +  
Sbjct: 355 AIGGHERALKYAEQH 369

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 40/293 (13%), Positives = 82/293 (27%), Gaps = 64/293 (21%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIE-------AFIRMIRVYIRLDQPIRAIDIGR 381
           QLG  YF LG   +A Q     L     +        +   +      + +   A     
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

Query: 382 NALDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC----- 430
             L          +E   +  +  ++             K           A+       
Sbjct: 151 RHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210

Query: 431 ------------------IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLA 466
                             +G  ++     + A+  ++  L++     +        +NL 
Sbjct: 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270

Query: 467 LCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVAILNALSTSVYNDQ--PE 520
               +  Q++     ++R L+LA  L E    A   Y++           + Y       
Sbjct: 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG----------NTYTLLHEFN 320

Query: 521 VALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA 567
            A+ ++ R L +   L +    A    +L         ++  +   E+ L LA
Sbjct: 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 38/317 (11%), Positives = 90/317 (28%), Gaps = 83/317 (26%)

Query: 390 EVTIMTEMARIFEGLNNM-----PMSVKYYKLILKR------DATCMEAIACIGVNHFYN 438
            +  M+ ++   E ++++           +    ++       ++    +A  G      
Sbjct: 2   PLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNA 61

Query: 439 DQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN--- 491
                 + F++  +Q G  +    + +++ L    FY   Y+  +   +  L+LA +   
Sbjct: 62  GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121

Query: 492 -ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMG--LYN----AELFNN 542
               A    N+ +                  + A +   R L +   L +         N
Sbjct: 122 RLGEAKSSGNLGN----------TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171

Query: 543 LALCCFYSQQYDMV-----------------VTCFERALSLA--LNENA--ADVWYNISH 581
           L        ++                    V  ++  L L   L +         N+ +
Sbjct: 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231

Query: 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSHGLSQNNLAVL 635
                              ++ G  D + AI+     L I       ++   + +NL   
Sbjct: 232 T-----------------YYLLG--DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272

Query: 636 EAREGHIERASTYLQAA 652
               G  E A+ + +  
Sbjct: 273 HIFLGQFEDAAEHYKRT 289

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.4 bits (151), Expect = 4e-10
 Identities = 27/344 (7%), Positives = 74/344 (21%), Gaps = 40/344 (11%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
             S    ++A +     L             + A    I     L+   R + +   A  
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             P++V  +       + L  +   +             + AIA         +  +  L
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
               +   +         +        +    ++    +A    L  +      +     
Sbjct: 349 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPDQVVAIASNGGKQ 406

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
            L  +         +  L    +   +         +        +    ++    +   
Sbjct: 407 ALETV---------QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQT-- 455

Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
             L         +                        Q +   +  +  L  A  +    
Sbjct: 456 HGLTPAQVVAIASHDGGK-------------------QALETVQQLLPVLCQAHGLTPDQ 496

Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            ++  +    +     ++R    L  A   +P       +    
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 9e-10
 Identities = 28/344 (8%), Positives = 73/344 (21%), Gaps = 40/344 (11%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
             S G  ++A +     L             + A          L+   R + +   A  
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             P++V  +       + L  +   +             + AIA  G         +  L
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALE-TVQRLL 415

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
               +   +         +        +    ++    +     L         +     
Sbjct: 416 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH--GLTPAQVVAIASHDG-- 471

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
              AL      +  +  L    +   +         +             ++    +A  
Sbjct: 472 GKQAL------ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAH- 524

Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
             L  +      +                        Q +   +  +  L  A  +    
Sbjct: 525 -GLTPDQVVAIASNGGGK-------------------QALETVQRLLPVLCQAHGLTPDQ 564

Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            ++  +    +     ++R    L  A   +        +    
Sbjct: 565 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 28/344 (8%), Positives = 78/344 (22%), Gaps = 39/344 (11%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
             S    ++A +     L             + A          L+   + + +   A  
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG 491

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             P++V  +       + L  +   +             + AIA  G      +  +  L
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 551

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
               +   +         +        +    ++    +A    L +       +  ++ 
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTQVQVVAIAS--NIG 607

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
              AL         +  L    +   +         +        +    ++    +A  
Sbjct: 608 GKQALE------TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH- 660

Query: 566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH 625
             L  +      +                        Q +   +  +  L  A  +    
Sbjct: 661 -GLTPDQVVAIASNGGGK-------------------QALETVQRLLPVLCQAHGLTQEQ 700

Query: 626 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            ++  +    +     ++R    L  A   +P       +    
Sbjct: 701 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 32/359 (8%), Positives = 87/359 (24%), Gaps = 36/359 (10%)

Query: 334 YFSLGLIREAQQQFNSALNQFT--------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD 385
             S    ++A +     L             + A          L+   R + +   A  
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
             P++V  +       + L  +   +             + AIA         +  +  L
Sbjct: 391 LTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
               +   +         +        +    ++    +A    L  +      +  ++ 
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH--GLTPDQVVAIAS--NIG 505

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
              AL+T       +  L    +   +         +        +    ++    +A  
Sbjct: 506 GKQALATV------QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559

Query: 566 LALNENAADVWYNISHV---------AIITEC-----SPFSFSTHTSYLFI-QGISDTRL 610
           L  ++  A    +              +   C     +        S +   Q +   + 
Sbjct: 560 LTPDQVVA--IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQR 617

Query: 611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            +  L  A  +  +  ++  +    +     ++R    L  A   +P       +    
Sbjct: 618 LLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 27/331 (8%), Positives = 74/331 (22%), Gaps = 32/331 (9%)

Query: 336 SLGLIREAQQQFNSALNQFTD-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIM 394
           +L  ++        A     D + A          L+   R + +        P +V  +
Sbjct: 407 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAI 466

Query: 395 TEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 454
                  + L  +   +             + AIA            +  L    +   +
Sbjct: 467 ASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL 526

Query: 455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV 514
                    +        +    ++    +A  L  ++  A    +  +     AL    
Sbjct: 527 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA--IAS--NGGGKQAL---- 578

Query: 515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574
             +  +  L    +   +         +        +    ++    +A    L      
Sbjct: 579 --ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH--GLTPAQVV 634

Query: 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 634
              +                        Q +   +  +  L  A  +     ++  +   
Sbjct: 635 AIASHDGGK-------------------QALETVQRLLPVLCQAHGLTPDQVVAIASNGG 675

Query: 635 LEAREGHIERASTYLQAAAASSPYLYETHYN 665
            +     ++R    L  A   +        +
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 17/231 (7%), Positives = 51/231 (22%), Gaps = 31/231 (13%)

Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
           +  L    +   +         +        +    ++    +A    L  +      + 
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH--GLPPDQVVAIAS- 265

Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
            ++    AL T       +  L    +   +         +        +    ++    
Sbjct: 266 -NIGGKQALETV------QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC 318

Query: 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
           +A    L  +      +                        Q +   +  +  L  A  +
Sbjct: 319 QAH--GLTPDQVVAIASHDGGK-------------------QALETVQRLLPVLCQAHGL 357

Query: 622 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 672
                ++  +    +     ++R    L  A   +P       +      L
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL 408

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 60.1 bits (145), Expect = 5e-10
 Identities = 29/205 (14%), Positives = 67/205 (32%), Gaps = 6/205 (2%)

Query: 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSAL 351
           +   EYL  H    A   +L  E +++ +  +  + +     YF       A +     L
Sbjct: 69  RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR----TL 124

Query: 352 NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI--FEGLNNMPM 409
           +Q   +E     +++ ++LD+   A    +   D   +        A +    G   +  
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
           +   ++ +  + +  +  +      H    + E A    +  L     + E   NL +  
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 470 FYSQQYDMVVTCFERALSLALNENA 494
            +  +   V   +   L  A   + 
Sbjct: 245 QHLGKPPEVTNRYLSQLKDAHRSHP 269

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 36/245 (14%), Positives = 61/245 (24%), Gaps = 45/245 (18%)

Query: 439 DQPEVALLFYRRLLQMGLY-------------NAELFNNLALCCFYSQQYDMVVTCFERA 485
              E  +  YR  L    Y               +     A       + D +V   +R 
Sbjct: 32  RDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91

Query: 486 LSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
           +S +++          + +          Y+  P+ AL    +       + E       
Sbjct: 92  MSRSVDVTNTTFLLMAASIYF--------YDQNPDAALRTLHQGD-----SLECMAMTVQ 138

Query: 546 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI 605
                 + D+     ++      +E+A       + V                     G 
Sbjct: 139 ILLKLDRLDLARKELKKMQ--DQDEDATLTQLATAWV-----------------SLAAGG 179

Query: 606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 665
              + A           S   L  N  A     +G  E A   LQ A        ET  N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239

Query: 666 QAVIS 670
             V+S
Sbjct: 240 LVVLS 244

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 21/249 (8%)

Query: 328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNAL--D 385
           V L + Y +         +     +   +++A            +    +      +   
Sbjct: 38  VFLYRAYLAQRKYGVVLDEIKP--SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95

Query: 386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL 445
                 T +   A I+    N   +++            +E +A         D+ ++A 
Sbjct: 96  VDVTNTTFLLMAASIYFYDQNPDAALRTL-----HQGDSLECMAMTVQILLKLDRLDLAR 150

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFY--SQQYDMVVTCFERALSLALNENAADVWYNISH 503
              +++              A        ++       F+             +    + 
Sbjct: 151 KELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAA 208

Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563
             +           + E A    +  L     + E   NL +   +  +   V   +   
Sbjct: 209 CHMAQ--------GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260

Query: 564 LSLALNENA 572
           L  A   + 
Sbjct: 261 LKDAHRSHP 269

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 55/390 (14%), Positives = 107/390 (27%), Gaps = 91/390 (23%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMI-----RVYIRLDQPIRAIDIGRNA 383
             G+     G  R     F +A+   T+    +  I       Y  L    +A++   + 
Sbjct: 14  LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73

Query: 384 LDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRD-------------- 421
           L           E      +    + L N   ++   +  L + R+              
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133

Query: 422 ----------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYN----AELFNNL 465
                       C              D  + A+ FY   L +   L +       F NL
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL 193

Query: 466 ALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYNDQ--PEV 521
               +    +   V   E+ L +A    + AA            + L  + Y      E 
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------ERRAYSNLG-NAYIFLGEFET 245

Query: 522 ALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA--- 572
           A  +Y++ L +   L +    A+   +L       Q Y+  +    + L++A   N    
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305

Query: 573 -ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSH 625
                +++ +                      G  +   A+      L I       S  
Sbjct: 306 EGRACWSLGNA-----------------YTALG--NHDQAMHFAEKHLEISREVGDKSGE 346

Query: 626 GLSQNNLAVLEAREGHI-ERASTYLQAAAA 654
             ++ NL+ L+   G      ++ +     
Sbjct: 347 LTARLNLSDLQMVLGLSYSTNNSIMSENTE 376

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 35/248 (14%), Positives = 69/248 (27%), Gaps = 54/248 (21%)

Query: 420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQY 475
            +A+C+  +A  G     +      + F+   +Q+G  +    + +++ L    FY   Y
Sbjct: 5   MEASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 476 DMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY 535
              +      L+LA                           DQ                 
Sbjct: 64  AKALEYHHHDLTLART-----------------------IGDQLGE-------------- 86

Query: 536 NAELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHV-AIITECSP 590
            A+   NL         +D  + C +R L ++         A   YN+ +V     +   
Sbjct: 87  -AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145

Query: 591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGHIER 644
                       +     + A+      LS+       ++ G +  NL       G+   
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205

Query: 645 ASTYLQAA 652
           A    +  
Sbjct: 206 AVIAHEQR 213

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 36/266 (13%), Positives = 81/266 (30%), Gaps = 48/266 (18%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN 389
           LG  Y + G         +         +A    +  Y         + +     D    
Sbjct: 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE------NLSLVTALGD-RAA 185

Query: 390 EVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIA--CIGVNHFYNDQPEV 443
           +      +      L N   +V  ++  L++ ++      E  A   +G  + +  + E 
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245

Query: 444 ALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA--- 494
           A  +Y++ L +   L +    A+   +L       Q Y+  +    + L++A   N    
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305

Query: 495 -ADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM------------GLYN-AE 538
                +++           + Y      + A+ F  + L++               N ++
Sbjct: 306 EGRACWSLG----------NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355

Query: 539 LFNNLALCCFYSQQYDMVVTCFERAL 564
           L   L L    +       T  + +L
Sbjct: 356 LQMVLGLSYSTNNSIMSENTEIDSSL 381

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 9e-10
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 40/200 (20%)

Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN 516
                + +  +    + +Y   V   E+      +    DV  ++             Y 
Sbjct: 6   IRQVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLG----------IAYV 53

Query: 517 DQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 574
                +       R L     N ++   L L     Q+YD+ V    +      N    +
Sbjct: 54  KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFN 111

Query: 575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL--AIQCLHLALSIDSSHGLSQNNL 632
           V + +                    L   G    R   AI    +AL +  + G     +
Sbjct: 112 VRFRLGVA-----------------LDNLG----RFDEAIDSFKIALGLRPNEGKVHRAI 150

Query: 633 AVLEAREGHIERA-STYLQA 651
           A    + G  E A   + +A
Sbjct: 151 AFSYEQMGRHEEALPHFKKA 170

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 12/136 (8%)

Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
                 R L     N ++   L L     Q+YD+ V    +      N    +V + +  
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGV 118

Query: 504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 563
              L+ L       + + A+  ++  L +     ++   +A       +++  +  F++A
Sbjct: 119 A--LDNL------GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170

Query: 564 LSLALNENAADVWYNI 579
               L+E A+     +
Sbjct: 171 NE--LDEGASVELALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 21/135 (15%)

Query: 535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS 594
                + +  +    + +Y   V   E+      +    DV  ++               
Sbjct: 6   IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIA------------ 51

Query: 595 THTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 654
                    G  D     + L  +L+    +      L +   +    + A   L   A 
Sbjct: 52  -----YVKTGAVD--RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104

Query: 655 SSPYLYETHYNQAVI 669
           ++P  +   +   V 
Sbjct: 105 ANPINFNVRFRLGVA 119

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 18/182 (9%), Positives = 46/182 (25%), Gaps = 29/182 (15%)

Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
           +  ++     + +                 +   A++   ++     ++ ++  +L +  
Sbjct: 1   MGNDDIRQVYYRDKG--ISHAKA------GRYSQAVMLLEQVYDADAFDVDVALHLGIAY 52

Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
             +   D      ER+L+     +   V   +                            
Sbjct: 53  VKTGAVDRGTELLERSLAD--APDNVKVATVLGLT-----------------YVQVQ--K 91

Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
             LA+  L      +  +   +  L V     G  + A    + A    P   + H   A
Sbjct: 92  YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151

Query: 668 VI 669
             
Sbjct: 152 FS 153

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 31/262 (11%), Positives = 61/262 (23%), Gaps = 49/262 (18%)

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
           G   +   Q + A+  Y +  ++   +    NN A   +   +Y+  ++    A+     
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQG 68

Query: 492 ENAADVWYNISHV----------------AI-LNALSTSVYN--------DQPEVALLFY 526
                 +  IS                   I     S + +            E  L   
Sbjct: 69  REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA 128

Query: 527 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIIT 586
                +    AE         F    +   V  +   +        A  + N +      
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--KRAPEDARGYSNRAAA---- 182

Query: 587 ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS 646
                        L          AI   + A+  D +   +    A  +        A 
Sbjct: 183 -------------LAKLM--SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227

Query: 647 TYLQAAAASSPYLYETHYNQAV 668
             L AA      +      + +
Sbjct: 228 ETLDAARTKDAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 32/313 (10%), Positives = 73/313 (23%), Gaps = 80/313 (25%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYI---RLDQPI----RAIDIGR 381
             G  ++      EA + +N A     DI                +  I     A++ GR
Sbjct: 10  AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 382 NALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP 441
                Y         +++ F  + N    +   K          + I       +Y    
Sbjct: 70  EMRADYKV-------ISKSFARIGNAYHKLGDLK----------KTIE------YYQKSL 106

Query: 442 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
                                +  A      +  +  +   E    +  N   A+     
Sbjct: 107 T-------------------EHRTADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLE 145

Query: 502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
                               A+  Y  +++    +A  ++N A        +   +    
Sbjct: 146 G-----KEYF---TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
           +A+    + N    +   +                          +   A++ L  A + 
Sbjct: 198 KAIE--KDPNFVRAYIRKATA-----------------QIAVK--EYASALETLDAARTK 236

Query: 622 DSSHGLSQNNLAV 634
           D+      +   +
Sbjct: 237 DAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 14/212 (6%), Positives = 53/212 (25%), Gaps = 33/212 (15%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
            A+         + ++Q+D  +  + +A    L+++      N +  A            
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWE--LHKDIT-YLNNRA--AAEYEK------G 52

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
           + E A+      ++ G      +  ++            +   ++   +   + +    +
Sbjct: 53  EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT--IEYYQKSLT-EH 109

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
             + +                   +  + +    ++       ++               
Sbjct: 110 RTADI-------------------LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150

Query: 638 REGHIERASTYLQAAAASSPYLYETHYNQAVI 669
            +     A          +P     + N+A  
Sbjct: 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 10/139 (7%)

Query: 394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 453
           +TE   I   + +   S    K I       M+ I     + +   + E A +F+R L  
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64

Query: 454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513
              YN +    LA      +Q+      +  A   AL +N     ++         L   
Sbjct: 65  YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA--FALGKNDYTPVFHTGQC--QLRL--- 117

Query: 514 VYNDQPEVALLFYRRLLQM 532
                P  A   +  ++Q 
Sbjct: 118 ---KAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 13/116 (11%), Positives = 37/116 (31%)

Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
           ++      + +  +   A  F     +  +  +++ +   D   ++ I  +   +   +Q
Sbjct: 26  KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85

Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
            + A   Y     +G  +     +   C    +       CFE  +  + +E    
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKI 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 29/150 (19%)

Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
            A+ ++  D  Y+ ++    +  +     +    A +F+R L     YN +    LA   
Sbjct: 29  NAIPDDMMDDIYSYAY----DFYNKGRIEE----AEVFFRFLCIYDFYNVDYIMGLAAIY 80

Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
              +Q+      +  A   AL +N     ++                             
Sbjct: 81  QIKEQFQQAADLYAVA--FALGKNDYTPVFHTGQC-----------------QLRLK--A 119

Query: 608 TRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
              A +C  L +   +   L     + L+A
Sbjct: 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
                +++ G I EA+  F       F +++  + +  +Y   +Q  +A D+   A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
            N+ T +    +    L     + + ++L+++  
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 10/147 (6%), Positives = 35/147 (23%), Gaps = 21/147 (14%)

Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAII 585
            + +  +     +   + A   +   + +     F        +    D    ++ +   
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC--IYDFYNVDYIMGLAAI--- 79

Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
                           I+     + A     +A ++  +      +    + R     +A
Sbjct: 80  --------------YQIKE--QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123

Query: 646 STYLQAAAASSPYLYETHYNQAVISNL 672
               +     S         Q+ +  +
Sbjct: 124 KECFELVIQHSNDEKLKIKAQSYLDAI 150

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 14/125 (11%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473
             ++       +E +  +G N +   + + A   ++ L  +  Y+A  F  L  C     
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 474 QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG 533
            Y+  +  +       ++ N     ++ +       L         + A   +     + 
Sbjct: 67  LYEQALQSYSYG--ALMDINEPRFPFHAAEC--HLQL------GDLDGAESGFYSARALA 116

Query: 534 LYNAE 538
                
Sbjct: 117 AAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 33/161 (20%)

Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
             L+E+  +  Y +      N      ++D    A   ++ L  +  Y+A  F  L  C 
Sbjct: 11  RGLSEDTLEQLYALGF----NQYQAGKWDD----AQKIFQALCMLDHYDARYFLGLGACR 62

Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD 607
                Y+  +  +       ++ N     ++ +                       G  D
Sbjct: 63  QSLGLYEQALQSYSYG--ALMDINEPRFPFHAAEC-----------------HLQLG--D 101

Query: 608 TRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIER 644
              A    + A ++ ++      L+    A+LEA     +R
Sbjct: 102 LDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 3/132 (2%)

Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
                   + +  +  +            + K ++ +   D         +G        
Sbjct: 8   AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67

Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-LNENAADVWY 499
            E AL  Y     M +       + A C       D   + F  A +LA        +  
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

Query: 500 NISHVAILNALS 511
                A+L A++
Sbjct: 128 RAG--AMLEAVT 137

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 21/132 (15%)

Query: 526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAII 585
              L  +     E    L    + + ++D     F+      L+   A  +  +      
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC--MLDHYDARYFLGLGAC--- 61

Query: 586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA 645
                            Q +     A+Q       +D +      + A    + G ++ A
Sbjct: 62  ----------------RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105

Query: 646 STYLQAAAASSP 657
            +   +A A + 
Sbjct: 106 ESGFYSARALAA 117

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 1/94 (1%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
            LG   +  G   +AQ+ F +       D   F+ +      L    +A+          
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
            NE       A     L ++  +   +       
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 15/144 (10%)

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
           GV        + AL  +  +      ++ +  N+       +        F R+++   +
Sbjct: 13  GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--D 67

Query: 492 ENAADVWYNISHV---------AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN 542
           ++ A  ++    +         AI   L  ++   +    + +    LQ  L+  E+  N
Sbjct: 68  KHLAVAYFQRGMLYYQTEKYDLAI-KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 126

Query: 543 LALCCFYSQQYDMVVTCFERALSL 566
           +A      +++         A S+
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSM 150

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 46/195 (23%)

Query: 454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS 513
           M L  A    N  +     + +   +  F       + +  + + +NI    +   L   
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSA-----VQDPHSRICFNIG--CMYTIL--- 50

Query: 514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS-------- 565
                   A   + R +    + A  +    +  + +++YD+ +   + AL         
Sbjct: 51  ---KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

Query: 566 ------LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL 619
                 L     A +V YNI+ +                    +   + + A + L LA 
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFM-----------------YAKKE--EWKKAEEQLALAT 148

Query: 620 SIDSSHGLSQNNLAV 634
           S+ S    S+ + A+
Sbjct: 149 SMKSEPRHSKIDKAM 163

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 23/160 (14%)

Query: 334 YFSLGLIREAQQQFNSALNQFTDI-----EAFIRMIRVYIRLDQPIRAIDIGRNALDCYP 388
            ++ G++   ++ +  AL+ F+ +          +  +Y  L     A      +++   
Sbjct: 9   LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY 448
           +      +   ++       +++K  K          EA+  +  N          + + 
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLK----------EALIQLRGNQ--------LIDYK 110

Query: 449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 488
              LQ  L+  E+  N+A      +++         A S+
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 45/288 (15%), Positives = 84/288 (29%), Gaps = 57/288 (19%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDIE-------AFIRMIRVYIRLDQPIRAIDIGR 381
           QLG  YF L    +A +  +  L     I        A   +      L     AI   +
Sbjct: 48  QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 107

Query: 382 NALDCYPNEVTIMTEMARIFEG-------LNNMPMSVKYYKLILKRDATCMEAIACIGVN 434
             L           +++R           L N+     Y+     +   C          
Sbjct: 108 RHL-----------DISRELNDKVGEARALYNLGNV--YHAK--GKSFGCPGPQDTGEFP 152

Query: 435 HFYNDQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSL 488
               +  + A+  Y   L +   L +       F NL    +    +   V   E+ L +
Sbjct: 153 EDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212

Query: 489 A--LNENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMG--LYN----AE 538
           A    + AA            + L  + Y      E A  +Y++ L +   L +    A+
Sbjct: 213 AKEFGDKAA-------ERRAYSNLG-NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 539 LFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHV 582
              +L       Q Y+  +    + L++A             +++ + 
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 46/296 (15%), Positives = 86/296 (29%), Gaps = 80/296 (27%)

Query: 422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDM 477
           A+C+  +A  G     +      + F+   +Q+G  +    + +++ L    FY   Y  
Sbjct: 3   ASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61

Query: 478 VVTCFERALSLAL----NENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQ 531
            +      L+LA         A    N+           +        + A++  +R L 
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKASGNLG----------NTLKVLGNFDEAIVCCQRHLD 111

Query: 532 M--GLYN----AELFNNLALC--------------------CFYSQQYDMVVTCFERALS 565
           +   L +    A    NL                                 V  +E  LS
Sbjct: 112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171

Query: 566 LA--LNENA--ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI 621
           L   L + A     + N+ +                   ++ G  + R A+      L I
Sbjct: 172 LVTALGDRAAQGRAFGNLGNT-----------------HYLLG--NFRDAVIAHEQRLLI 212

Query: 622 ------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671
                  ++   + +NL       G  E AS Y +        L     ++AV + 
Sbjct: 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL----LARQLKDRAVEAQ 264

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 36/264 (13%), Positives = 80/264 (30%), Gaps = 45/264 (17%)

Query: 330 LGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGR--NALDCY 387
           LG     LG   EA       L+   ++   +   R            ++G   +A    
Sbjct: 89  LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY---------NLGNVYHAKGKS 139

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYK--LILKRDAT--CMEAIAC--IGVNHFYNDQP 441
                         +  N +  +V  Y+  L L         +  A   +G  H+     
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199

Query: 442 EVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN---- 491
             A++ + + L +     +       ++NL     +  +++     +++ L LA      
Sbjct: 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259

Query: 492 ENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQMG--LYN----AELFNNL 543
              A   Y++           + Y      E A+ ++ + L +   L +         +L
Sbjct: 260 AVEAQSCYSLG----------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309

Query: 544 ALCCFYSQQYDMVVTCFERALSLA 567
                    +D  +   E+ L ++
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEIS 333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 414 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 473
             ++ +  +  +E +  +  N + +   E A   ++ L  +  Y++  F  L  C     
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69

Query: 474 QYDMVVTCFERALSLALNENAADVWYNISHV 504
           QYD+ +  +       ++       ++ +  
Sbjct: 70  QYDLAIHSYSYG--AVMDIXEPRFPFHAAEC 98

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 11/109 (10%), Positives = 28/109 (25%)

Query: 381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ 440
               +   + +  +  +A           +   ++ +   D         +G       Q
Sbjct: 11  AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70

Query: 441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 489
            ++A+  Y     M +       + A C     +     +    A  L 
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 547
             ++ +  +  Y+++     N   +  Y D    A   ++ L  +  Y++  F  L  C 
Sbjct: 14  NEISSDTLEQLYSLAF----NQYQSGXYED----AHXVFQALCVLDHYDSRFFLGLGACR 65

Query: 548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582
               QYD+ +  +       ++       ++ +  
Sbjct: 66  QAMGQYDLAIHSYSYG--AVMDIXEPRFPFHAAEC 98

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 12/121 (9%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
           AE + NL    +    YD  +  +++AL   L+  +A+ WYN+      NA         
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLG-----NAYY---KQGD 50

Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
            + A+ +Y++ L++   +AE + NL    +    YD  +  +++AL   L+  +A+ WYN
Sbjct: 51  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYN 108

Query: 579 I 579
           +
Sbjct: 109 L 109

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 14/125 (11%)

Query: 444 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 503
           A+ +Y++ L++   +AE + NL    +    YD  +  +++AL L  +  +A+ WYN+  
Sbjct: 20  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG- 76

Query: 504 VAILNALSTSVYNDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE 561
                    + Y  Q   + A+ +Y++ L++   +AE + NL    +    YD  +  ++
Sbjct: 77  ---------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127

Query: 562 RALSL 566
           +AL L
Sbjct: 128 KALEL 132

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 28/155 (18%)

Query: 431 IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFER 484
           +G  H+       A++ + + L +     +       ++NL     +  +++     +++
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 485 ALSLAL----NENAADVWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM--GLYN 536
            L LA         A   Y++           + Y      E A+ ++ + L +   L +
Sbjct: 75  TLLLARQLKDRAVEAQSCYSLG----------NTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 537 ----AELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                    +L         +D  +   E+ L ++
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 22/121 (18%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVAILNALSTSV 514
              F NL    +    +   V   E+ L +A    + A     + N+           + 
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG----------NA 58

Query: 515 YNDQ--PEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSL 566
           Y      E A  +Y++ L +   L +    A+   +L       Q Y+  +    + L++
Sbjct: 59  YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118

Query: 567 A 567
           A
Sbjct: 119 A 119

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 18/140 (12%)

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
            PE  L   +  ++    N+E +  L     +   Y   +  + +AL   L    A+++ 
Sbjct: 25  NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL--QLRGENAELYA 82

Query: 578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA 637
            ++ V                  +      T      +  AL++DS+   +   LA    
Sbjct: 83  ALATV----------------LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126

Query: 638 REGHIERASTYLQAAAASSP 657
            + +  +A    Q     + 
Sbjct: 127 MQANYAQAIELWQKVMDLNS 146

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 12/111 (10%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
           N E +    +  + +  Y   +  FE+A+   L+   +  W        L  L      +
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKA--LYNL------E 54

Query: 518 QPEVALLFYRRLLQMG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
           + E A+  Y  ++ +    YN +++   A    Y +  ++     E    L
Sbjct: 55  RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
           +AE + NL    +    YD  +  +++AL L  + N A+ WYN+      NA        
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG-----NAYYK---QG 57

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 577
             + A+ +Y++ L++   NAE + NL    +    YD  +  +++AL   L+ N A+   
Sbjct: 58  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQ 115

Query: 578 NI 579
           N+
Sbjct: 116 NL 117

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 25/250 (10%), Positives = 60/250 (24%), Gaps = 60/250 (24%)

Query: 339 LIREAQQQFNSALNQFTD-----IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPN---- 389
            I +A++   ++  ++          + +    +    Q  +A D      + + N    
Sbjct: 13  HIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL 72

Query: 390 --EVTIMTEMARIFEGLNNMPMSVKYYKLIL----KRDATCMEAIACIGVNHFYNDQ-PE 442
                   +   + + L  MP +V+Y +       +       A+A              
Sbjct: 73  FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLS 132

Query: 443 VALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 496
            A+  Y++   +          AEL    +      Q++D      ++  S+        
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192

Query: 497 VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV 556
                                                    +      L   +   Y   
Sbjct: 193 --------------------------------------TCYKKCIAQVLVQLHRADYVAA 214

Query: 557 VTCFERALSL 566
             C   + S+
Sbjct: 215 QKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 18/188 (9%), Positives = 49/188 (26%), Gaps = 32/188 (17%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQFTDI-------EAFIRMIRVYIRLDQPIRAIDIGR 381
           +    + +   + +A+  +        +        +AF +   +   L +   A+    
Sbjct: 41  KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE 100

Query: 382 NALDCY------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD---------ATCME 426
            A   Y            +    ++ E L+ +  +V  Y+               A  + 
Sbjct: 101 KASVMYVENGTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERLRQAAELIG 159

Query: 427 AIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVT 480
             + +        + + A    ++   M           +      L   +   Y     
Sbjct: 160 KASRL---LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216

Query: 481 CFERALSL 488
           C   + S+
Sbjct: 217 CVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 28/210 (13%), Positives = 53/210 (25%), Gaps = 47/210 (22%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAILNALSTSV 514
           A+ F    +     Q+    V   E+A  + +     + AA                  +
Sbjct: 76  AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG----------KL 125

Query: 515 YNDQ-PEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLA 567
                   A+  Y++   +          AEL    +      Q++D      ++  S+ 
Sbjct: 126 MEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185

Query: 568 LNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS 623
                             V                 L      D   A +C+  + SI  
Sbjct: 186 KEMENYPTCYKKCIAQVLV----------------QLHRA---DYVAAQKCVRESYSIPG 226

Query: 624 SHGLSQNNLA--VLEA-REGHIERASTYLQ 650
             G         +L+A  E   E+     +
Sbjct: 227 FSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 20/116 (17%), Positives = 27/116 (23%), Gaps = 21/116 (18%)

Query: 542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF 601
              L              FE            + W ++       E              
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENE-------------- 65

Query: 602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 657
                   LAI  L+ A  +D         LAV    E +   A   L+A   S P
Sbjct: 66  -----KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 9/112 (8%), Positives = 24/112 (21%), Gaps = 12/112 (10%)

Query: 464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVAL 523
              L              FE            + W ++              N++  +A+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQA--------ENEKDGLAI 71

Query: 524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 575
           +       +   +  +   LA+        +  +        L        +
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW--LLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 396 EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
           E       L N+  +   ++ + +++    EA   +G+    N++  +A++       + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 497
             +  +   LA+        +  +        L        +
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAW--LLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 329 QLGKCYFSLGLIREAQQQFNSALNQ-FTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY 387
           + G     L  + EA   F +   +     EA+  +       ++   AI    +A    
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRD 421
           P ++ +   +A      +N   ++   +  L   
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 22/224 (9%), Positives = 46/224 (20%), Gaps = 55/224 (24%)

Query: 442 EVALLFYRRL-LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAAD 496
                    L        +     L     +  ++D     F+     A     +     
Sbjct: 10  LAERQAQALLAHPATA--SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67

Query: 497 VWYNISHVAILNALSTSVYNDQ--PEVALLFYRRLLQM-------GLYNAELFNNLALCC 547
             + +            V       + A   +    ++        L  +     +A   
Sbjct: 68  ALHQVG----------MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117

Query: 548 FYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ 603
            +          +E++L  A         A  +  +  +A                   +
Sbjct: 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA-----------------QQE 160

Query: 604 GISDTRLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGH 641
              +   A Q    A  I        +       L  LE    H
Sbjct: 161 K--NLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 33/126 (26%)

Query: 292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIRE-------AQ 344
           +Y + ++ HH       +       +   FR           +     + +       A 
Sbjct: 471 QYFYSHIGHH-------LKNIEHPERMTLFRMV---------FLDFRFLEQKIRHDSTAW 514

Query: 345 QQFNSALNQFTDIEAFIRMIRVYIRLDQPI---RAIDIGRNALDCYPNEVTIMTEMARIF 401
               S LN    ++ +    + YI  + P        I          E  I ++   + 
Sbjct: 515 NASGSILNTLQQLKFY----KPYICDNDPKYERLVNAILDFLPKI--EENLICSKYTDLL 568

Query: 402 E-GLNN 406
              L  
Sbjct: 569 RIALMA 574

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 15/166 (9%), Positives = 46/166 (27%), Gaps = 20/166 (12%)

Query: 393 IMTEMARIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALL 446
               +A       +    +   K +L +  T       +     I   +  N   +  + 
Sbjct: 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGID 176

Query: 447 FYRRLLQM-------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 499
            + ++L+          ++ ++  N A   +   +Y+  +    +A+ ++   N      
Sbjct: 177 LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---SMA 233

Query: 500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
            I  +             +       Y++         ++    A 
Sbjct: 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF----FDILEMHAY 275

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 474 QYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYND--QPEVALLFYRRLL 530
                V  +E+A++  L   + A+ +  +           S +    +   A       +
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLG----------STFRTLGEYRKAEAVLANGV 54

Query: 531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 572
           +    +  L    A+  +   +Y+  V    + ++   ++  
Sbjct: 55  KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	677
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.98
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.87
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.84
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.82
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.73
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.73
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.71
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.71
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.67
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.59
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.54
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.53
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.5
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.47
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.45
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.44
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.44
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.44
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.42
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.41
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.4
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.4
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.39
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.38
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.36
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.3
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.3
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.29
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.27
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.26
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.25
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.24
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.94
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.81
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.8
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.75
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.75
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.69
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.63
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.47
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.45
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.42
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.37
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.33
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.28
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.27
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.2
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.13
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.05
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.81
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.75
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.2
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.92
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.83
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.74
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.68
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.46
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.38
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.01
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.78
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.82
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.76
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.74
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.57
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.3
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.29
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.05
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.91
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.6
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.34
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.94
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.88
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.84
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.83
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.81
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.53
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.95
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.17
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.21
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.2
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.73

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.2e-41  Score=356.37  Aligned_cols=345  Identities=17%  Similarity=0.192  Sum_probs=332.3

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAI  377 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~  377 (677)
                      +...|++++|+..++.+++..|. ....+..+|.++...|++++|+..|+++++..| +..++..+|.++...|++++|+
T Consensus        43 ~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  121 (388)
T 1w3b_A           43 HFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV  121 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            34468888999999999999854 455558999999999999999999999999999 8899999999999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      ..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.
T Consensus       122 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  201 (388)
T 1w3b_A          122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN  201 (388)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA  537 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  537 (677)
                      +..++..+|.++...|++++|+..|++++..+|++  ..++..+|.++.        ..|++++|+..|+++++.+|.++
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~p~~~  271 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYY--------EQGLIDLAIDTYRRAIELQPHFP  271 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTCSSCH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCCCCH
Confidence            99999999999999999999999999999999998  999999999998        99999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL  617 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~  617 (677)
                      .++..+|.++...|++++|+.+|+++++  ..|.+..++..++.++.                   ..|++++|+..|++
T Consensus       272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          272 DAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR-------------------EQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------TTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHH-------------------HcCCHHHHHHHHHH
Confidence            9999999999999999999999999999  88999999999999999                   99999999999999


Q ss_pred             HHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        618 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       618 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      +++..|++..++..+|.++...|++++|+..|+++++++|++..+++++|.++..+|+
T Consensus       331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.3e-39  Score=337.62  Aligned_cols=349  Identities=20%  Similarity=0.177  Sum_probs=337.1

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI  374 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~  374 (677)
                      +..+++.|++++|+..+.++++..|.+. ..+..+|.++...|++++|+..++++++.+| +..++..+|.++...|+++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNT-GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            3446678999999999999999996554 4447999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      +|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..
T Consensus        85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      .|.+..++..+|.++...|++++|+..|++++..+|+.  ..++..+|.++.        ..|++++|+..|++++..+|
T Consensus       165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~p  234 (388)
T 1w3b_A          165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLK--------EARIFDRAVAAYLRALSLSP  234 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------TTTCTTHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999998  999999999998        99999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607        535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC  614 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~  614 (677)
                      +++.++..+|.++...|++++|+..|+++++  .+|+++.++..+|.++.                   ..|++++|+..
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~g~~~~A~~~  293 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALK-------------------EKGSVAEAEDC  293 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHH-------------------HHSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHH
Confidence            9999999999999999999999999999999  89999999999999999                   99999999999


Q ss_pred             HHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       615 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      |+++++..|.++.++..+|.++...|++++|+..|+++++++|++..+++++|.++...|++
T Consensus       294 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  355 (388)
T 1w3b_A          294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999975

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-37  Score=346.36  Aligned_cols=351  Identities=14%  Similarity=0.090  Sum_probs=326.0

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHH--------------------------------------HH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQL--------------------------------------GK  332 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~l--------------------------------------a~  332 (677)
                      ....++.+|.+.|++++|+..|+++++..|.....+ ..+                                      +.
T Consensus       202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  280 (597)
T 2xpi_A          202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF-DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN  280 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH-HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence            445667778889999999999999999886433332 333                                      33


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16607        333 CYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVK  412 (677)
Q Consensus       333 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  412 (677)
                      .+.+.|++++|+..|+++++..++..++..++.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+.
T Consensus       281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  360 (597)
T 2xpi_A          281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL  360 (597)
T ss_dssp             TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred             HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence            44567899999999999998856999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        413 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       413 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      .++++++..|.+..++..++.+|...|++++|+++|+++++..|.+..+|..++.+|...|++++|+..|++++...|++
T Consensus       361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  440 (597)
T 2xpi_A          361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT  440 (597)
T ss_dssp             HHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh----h
Q psy16607        493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA----L  568 (677)
Q Consensus       493 ~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~  568 (677)
                        ..++..++.++.        ..|++++|+..|+++++..|.++.+|..+|.++.+.|++++|+.+|+++++..    .
T Consensus       441 --~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  510 (597)
T 2xpi_A          441 --HLPYLFLGMQHM--------QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS  510 (597)
T ss_dssp             --SHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             --hHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence              899999999998        99999999999999999999999999999999999999999999999999842    2


Q ss_pred             ccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy16607        569 NENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  647 (677)
Q Consensus       569 ~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  647 (677)
                      +|+. ..+|..++.++.                   ..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+.
T Consensus       511 ~p~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  571 (597)
T 2xpi_A          511 NEKPWAATWANLGHAYR-------------------KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT  571 (597)
T ss_dssp             CSGGGHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chhhHHHHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            5664 789999999999                   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        648 YLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       648 ~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      +|+++++++|+++.++..++.+|.
T Consensus       572 ~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          572 HLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999998874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.7e-35  Score=324.14  Aligned_cols=354  Identities=14%  Similarity=0.063  Sum_probs=323.7

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhC---------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKAC---------------EFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT  355 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~---------------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  355 (677)
                      ....++.+|...|++++|+.+|++.....               .+.+...++.+|.++.+.|++++|+..|+++++.+|
T Consensus       152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  231 (597)
T 2xpi_A          152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA  231 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            33456677888999999999999643221               011345568999999999999999999999999998


Q ss_pred             -CHHHHHHHHH--------------------------------------HHHHcCChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16607        356 -DIEAFIRMIR--------------------------------------VYIRLDQPIRAIDIGRNALDCYPNEVTIMTE  396 (677)
Q Consensus       356 -~~~~~~~la~--------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  396 (677)
                       +..++..++.                                      .|.+.|++++|+..|+++++. |.+..++..
T Consensus       232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~  310 (597)
T 2xpi_A          232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLC  310 (597)
T ss_dssp             TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHH
T ss_pred             hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHH
Confidence             6776665543                                      344678899999999999887 778999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q psy16607        397 MARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD  476 (677)
Q Consensus       397 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  476 (677)
                      ++.++.+.|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|+++
T Consensus       311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  390 (597)
T 2xpi_A          311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS  390 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHH
Q psy16607        477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  556 (677)
Q Consensus       477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  556 (677)
                      +|+.+|+++++..|.+  ..+|..++.++.        ..|++++|+..|+++++..|.+..++..+|.++...|++++|
T Consensus       391 ~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          391 EARRYFSKSSTMDPQF--GPAWIGFAHSFA--------IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998  999999999998        999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc------CCCC-hHHH
Q psy16607        557 VTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSH-GLSQ  629 (677)
Q Consensus       557 ~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~------~p~~-~~~~  629 (677)
                      +.+|+++++  ..|.++.+|..++.++.                   ..|++++|+..|+++++.      +|++ ..+|
T Consensus       461 ~~~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~  519 (597)
T 2xpi_A          461 NEYLQSSYA--LFQYDPLLLNELGVVAF-------------------NKSDMQTAINHFQNALLLVKKTQSNEKPWAATW  519 (597)
T ss_dssp             HHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred             HHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence            999999999  88999999999999999                   999999999999999988      5654 6899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        630 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       630 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      ..+|.++...|++++|+..|+++++++|++..++..++.++...|+.
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  566 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP  566 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            99999999999999999999999999999999999999999999974

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=312.66  Aligned_cols=282  Identities=11%  Similarity=0.045  Sum_probs=266.0

Q ss_pred             HHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----c--C-------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIR---LDQPIRAIDIGRNALD-----C--Y-------PNEVTIMTEMARIFEGLNNMPMSVKYYKLILK  419 (677)
Q Consensus       357 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  419 (677)
                      ...++.+|.++..   .|++++|+..|+++++     .  .       |.+..++..+|.++...|++++|+..|++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            7788888988887   8999999999999999     5  3       45567899999999999999999999999999


Q ss_pred             hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH
Q psy16607        420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  499 (677)
Q Consensus       420 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  499 (677)
                      .+|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|.+  ..++.
T Consensus       266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~  342 (514)
T 2gw1_A          266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYI  342 (514)
T ss_dssp             HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHH
T ss_pred             hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHH
Confidence            9999 99999999999999999999999999999999999999999999999999999999999999999998  88999


Q ss_pred             HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH-----
Q psy16607        500 NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD-----  574 (677)
Q Consensus       500 ~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~-----  574 (677)
                      .+|.++.        ..|++++|+..++++++..|.++.++..+|.++...|++++|+.+|++++.  ..|++..     
T Consensus       343 ~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~  412 (514)
T 2gw1_A          343 QLACLAY--------RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGI  412 (514)
T ss_dssp             HHHHHTT--------TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTSSSCSSCS
T ss_pred             HHHHHHH--------HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccchHHHHH
Confidence            9999998        999999999999999999999999999999999999999999999999999  6666644     


Q ss_pred             -HHHHHHHHHHHhhcCCCCcccchhhhHHhc---CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        575 -VWYNISHVAIITECSPFSFSTHTSYLFIQG---ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ  650 (677)
Q Consensus       575 -~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  650 (677)
                       ++..+|.++.                   .   .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus       413 ~~~~~l~~~~~-------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  473 (514)
T 2gw1_A          413 APLVGKATLLT-------------------RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE  473 (514)
T ss_dssp             HHHHHHHHHHH-------------------TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHh-------------------hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence             9999999998                   9   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHH
Q psy16607        651 AAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       651 ~al~~~p~~~~~~~~la~~~  670 (677)
                      ++++++|+++.++..+....
T Consensus       474 ~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          474 ESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHH
Confidence            99999999999888776543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=4e-33  Score=288.98  Aligned_cols=318  Identities=16%  Similarity=0.167  Sum_probs=269.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607        326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL  404 (677)
Q Consensus       326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  404 (677)
                      .++.+|.+++..|++++|+..|+++++..| +..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ   84 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence            346777778888888888888888877777 6777788888888888888888888888887887777888888888888


Q ss_pred             CChhHHHHHHHHHHHhCc---CCHHHHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        405 NNMPMSVKYYKLILKRDA---TCMEAIACI------------GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       405 g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      |++++|+..|+++++.+|   .+..++..+            |.++...|++++|+..++++++..|.++.++..+|.++
T Consensus        85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  164 (359)
T 3ieg_A           85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF  164 (359)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            888888888888887777   666666665            67888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH--------
Q psy16607        470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN--------  541 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------  541 (677)
                      ...|++++|+..+++++...|.+  ..++..+|.++.        ..|++++|+..++++++..|++..++.        
T Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (359)
T 3ieg_A          165 IKEGEPRKAISDLKAASKLKSDN--TEAFYKISTLYY--------QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL  234 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence            88888888888888888888887  888888888887        788888888888888888888877654        


Q ss_pred             ----HHHHHHHhccCHHHHHHHHHHHHHHhhccchHH----HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        542 ----NLALCCFYSQQYDMVVTCFERALSLALNENAAD----VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       542 ----~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~----~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                          .+|.++...|++++|+..|++++.  ..|++..    ++..+|.++.                   ..|++++|+.
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~-------------------~~~~~~~A~~  293 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFS-------------------KDEKPVEAIR  293 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHH-------------------HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHH-------------------HccCHHHHHH
Confidence                448889999999999999999999  7787763    4667899988                   9999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      .|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=3.2e-33  Score=299.96  Aligned_cols=336  Identities=15%  Similarity=0.133  Sum_probs=286.2

Q ss_pred             HHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16607        305 VASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNA  383 (677)
Q Consensus       305 ~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a  383 (677)
                      ...+...+.+++..+|. +...++.+|.++...|++++|+..|+++++..| +..++..+|.++...|++++|+..|+++
T Consensus         8 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A            8 SSGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             ---------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34455666667777743 444447888899999999999999999988887 7888889999999999999999999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH---HHHHHH------------HHHHHhCCChHHHHHHH
Q psy16607        384 LDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM---EAIACI------------GVNHFYNDQPEVALLFY  448 (677)
Q Consensus       384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~  448 (677)
                      ++.+|++..++..+|.++...|++++|+..|+++++.+|.+.   .++..+            |.++...|++++|+..|
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  166 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL  166 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999998888899999999999999999999999998888877   665555            66688899999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607        449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR  528 (677)
Q Consensus       449 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~  528 (677)
                      ++++...|.+..++..+|.+|...|++++|+..|++++...|.+  ..++..+|.++.        ..|++++|+..|++
T Consensus       167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~  236 (450)
T 2y4t_A          167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN--TEAFYKISTLYY--------QLGDHELSLSEVRE  236 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHH--------HTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887  888999999988        88999999999999


Q ss_pred             HHHcCCCcHHHHHHH------------HHHHHhccCHHHHHHHHHHHHHHhhccchH----HHHHHHHHHHHHhhcCCCC
Q psy16607        529 LLQMGLYNAELFNNL------------ALCCFYSQQYDMVVTCFERALSLALNENAA----DVWYNISHVAIITECSPFS  592 (677)
Q Consensus       529 al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~p~~~----~~~~~l~~~~~~~~~~p~~  592 (677)
                      ++...|++...+..+            |.++...|++++|+.+|++++.  ..|+++    ..+..+|.++.        
T Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~--------  306 (450)
T 2y4t_A          237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFS--------  306 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHH--------
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHH--------
Confidence            999999988877666            9999999999999999999999  778774    47888999998        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                                 ..|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..++.+...
T Consensus       307 -----------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          307 -----------KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             -----------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             -----------HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence                       999999999999999999999999999999999999999999999999999999999999999966443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=308.64  Aligned_cols=352  Identities=14%  Similarity=0.068  Sum_probs=329.3

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR  369 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~  369 (677)
                      .....|..++..|++++|+..|++++...|  +..++..+|.++...|++++|+..|+++++.+| +..++..+|.++..
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            445567778889999999999999999996  466668999999999999999999999999999 88999999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCC------------------------------------------------------------
Q psy16607        370 LDQPIRAIDIGRNALDCYPN------------------------------------------------------------  389 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~------------------------------------------------------------  389 (677)
                      .|++++|+..|++++...|.                                                            
T Consensus        86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
T 2gw1_A           86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA  165 (514)
T ss_dssp             TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence            99999999999999888763                                                            


Q ss_pred             -------------------cHHHHHHHHHHHHH---cCChhHHHHHHHHHHH-----h--C-------cCCHHHHHHHHH
Q psy16607        390 -------------------EVTIMTEMARIFEG---LNNMPMSVKYYKLILK-----R--D-------ATCMEAIACIGV  433 (677)
Q Consensus       390 -------------------~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~  433 (677)
                                         +...+..+|.++..   .|++++|+..|++++.     +  .       |.+..++..+|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (514)
T 2gw1_A          166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI  245 (514)
T ss_dssp             HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence                               26677888888776   8999999999999999     5  3       555788999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS  513 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~  513 (677)
                      ++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.+  ..++..+|.++.       
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~-------  315 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN--SSVYYHRGQMNF-------  315 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--THHHHHHHHHHH-------
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--HHHHHHHHHHHH-------
Confidence            999999999999999999999999 9999999999999999999999999999999998  889999999998       


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                       ..|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|++++.  ..|++..++..+|.++.         
T Consensus       316 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~---------  383 (514)
T 2gw1_A          316 -ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILT---------  383 (514)
T ss_dssp             -HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHH---------
T ss_pred             -HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHH---------
Confidence             999999999999999999999999999999999999999999999999999  78999999999999999         


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL------SQNNLAVLEAR---EGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                                ..|++++|+..|++++...|.++.      ++..+|.++..   .|++++|+..|+++++.+|++..+++
T Consensus       384 ----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          384 ----------DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             ----------HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ----------HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence                      999999999999999999988865      99999999999   99999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q psy16607        665 NQAVISNLVSVI  676 (677)
Q Consensus       665 ~la~~~~~~G~i  676 (677)
                      .+|.++...|+.
T Consensus       454 ~la~~~~~~g~~  465 (514)
T 2gw1_A          454 GLAQMKLQQEDI  465 (514)
T ss_dssp             HHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCH
Confidence            999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.3e-32  Score=295.34  Aligned_cols=353  Identities=11%  Similarity=0.059  Sum_probs=318.7

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIR  369 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~  369 (677)
                      ....++..++..|++++|+..|++++...|. ....++.+|.++...|++++|+..|+++++..| +..++..+|.++..
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4445667788899999999999999999865 455558999999999999999999999999998 89999999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCcH---HHHHHH------------HHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEV---TIMTEM------------ARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      .|++++|+..|+++++.+|.+.   .++..+            |.++...|++++|+..|+++++..|.+..++..+|.+
T Consensus       107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  186 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC  186 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999988   776555            6669999999999999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH------------H
Q psy16607        435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI------------S  502 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l------------~  502 (677)
                      |...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++  ...+..+            +
T Consensus       187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998  6666555            7


Q ss_pred             HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHH
Q psy16607        503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE----LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  578 (677)
Q Consensus       503 ~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~  578 (677)
                      .++.        ..|++++|+..|+++++..|.++.    .+..+|.++...|++++|+..+++++.  ..|++..+|..
T Consensus       265 ~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~  334 (450)
T 2y4t_A          265 EELI--------RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKD  334 (450)
T ss_dssp             HHHH--------HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHH--------HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence            7776        899999999999999999999854    788999999999999999999999999  78999999999


Q ss_pred             HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH------------HHHcC-----C
Q psy16607        579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL------------EAREG-----H  641 (677)
Q Consensus       579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~  641 (677)
                      +|.++.                   ..|++++|+..|+++++++|+++.++..++.+            |...|     +
T Consensus       335 l~~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~  395 (450)
T 2y4t_A          335 RAEAYL-------------------IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK  395 (450)
T ss_dssp             HHHHHH-------------------HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred             HHHHHH-------------------HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence            999999                   99999999999999999999999999999955            44445     6


Q ss_pred             HHHHHHHHHH-HHHhCCCCh----------HHHHHHHHHHHhcCC
Q psy16607        642 IERASTYLQA-AAASSPYLY----------ETHYNQAVISNLVSV  675 (677)
Q Consensus       642 ~~~A~~~~~~-al~~~p~~~----------~~~~~la~~~~~~G~  675 (677)
                      .+++...|++ +++..|++.          .....++.+|..+|+
T Consensus       396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d  440 (450)
T 2y4t_A          396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD  440 (450)
T ss_dssp             TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            6788999987 888888642          255667777777765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4e-32  Score=298.38  Aligned_cols=262  Identities=12%  Similarity=0.077  Sum_probs=224.7

Q ss_pred             ChHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHH
Q psy16607        372 QPIRAIDIGRNALDCYPNEVT-------IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA  444 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  444 (677)
                      ++++|+..|+++++.+|++..       ++..+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|
T Consensus       217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A  295 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF  295 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence            445555566666667777654       4677788888899999999999999999998 88899999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607        445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALL  524 (677)
Q Consensus       445 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~  524 (677)
                      +..++++++..|.++.++..+|.++...|++++|+..|++++...|.+  ..++..+|.++.        ..|++++|+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~  365 (537)
T 3fp2_A          296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLY--------KQGKFTESEA  365 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHH--------HTTCHHHHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999887  788999999988        8899999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHhhcCCCCcccchh
Q psy16607        525 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA------DVWYNISHVAIITECSPFSFSTHTS  598 (677)
Q Consensus       525 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~------~~~~~l~~~~~~~~~~p~~~~~~~~  598 (677)
                      .++++++.+|.++.++..+|.++...|++++|+..|++++.  ..|++.      ..+..++.++.              
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~a~~~~--------------  429 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEEVQEKIHVGIGPLIGKATILA--------------  429 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHCSSCSSTTHHHHHHHHHHH--------------
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCcchhhHHHHHHHHHHHHHHH--------------
Confidence            99999999999999999999999999999999999999988  445433      23455566666              


Q ss_pred             hhHHhcC----------CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q psy16607        599 YLFIQGI----------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN  665 (677)
Q Consensus       599 ~~~l~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  665 (677)
                           ..          |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++.+....
T Consensus       430 -----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  501 (537)
T 3fp2_A          430 -----RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA  501 (537)
T ss_dssp             -----HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred             -----HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence                 77          999999999999999999999999999999999999999999999999999999876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=3e-31  Score=274.79  Aligned_cols=318  Identities=10%  Similarity=0.043  Sum_probs=294.5

Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHc
Q psy16607        292 KYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRL  370 (677)
Q Consensus       292 ~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~  370 (677)
                      ...+|.+++..|++++|+..|+++++..|. ....+..+|.++...|++++|+..|+++++..| +..++..+|.++...
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ   84 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence            445677788899999999999999999965 455558999999999999999999999999999 899999999999999


Q ss_pred             CChHHHHHHHHHHHHcCC---CcHHHHHHH------------HHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYP---NEVTIMTEM------------ARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      |++++|+..|+++++.+|   .+..++..+            |.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  164 (359)
T 3ieg_A           85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF  164 (359)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            999999999999999999   888888777            78999999999999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH------------HHHH
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY------------NISH  503 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~l~~  503 (677)
                      ...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++  ..++.            .+|.
T Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998  55443            3366


Q ss_pred             HHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHH
Q psy16607        504 VAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE----LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  579 (677)
Q Consensus       504 ~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l  579 (677)
                      ++.        ..|++++|+..++++++..|+++.    ++..+|.++...|++++|+.+|+++++  .+|+++.++..+
T Consensus       243 ~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~  312 (359)
T 3ieg_A          243 ELI--------RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDR  312 (359)
T ss_dssp             HHH--------HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHH--------HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence            666        899999999999999999999874    466799999999999999999999999  799999999999


Q ss_pred             HHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607        580 SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  641 (677)
Q Consensus       580 ~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  641 (677)
                      |.++.                   ..|++++|+..|+++++++|++..++..++.++...++
T Consensus       313 ~~~~~-------------------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          313 AEAYL-------------------IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHH-------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------------------HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999                   99999999999999999999999999999988776553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=289.75  Aligned_cols=355  Identities=11%  Similarity=0.063  Sum_probs=276.6

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACE--------FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------  355 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------  355 (677)
                      ...++|+++...|++++|++.|+++++..+        +.....+.++|.+|..+|++++|+.+|++++++.+       
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            445789999999999999999999987622        23345567999999999999999999999987532       


Q ss_pred             --CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607        356 --DIEAFIRMIRVYIRL--DQPIRAIDIGRNALDCYPNEVTIMTEMARIFE---GLNNMPMSVKYYKLILKRDATCMEAI  428 (677)
Q Consensus       356 --~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~  428 (677)
                        ...++..+|.++...  +++++|+.+|+++++++|++++++..++.++.   ..++.++|++.|+++++++|.+..++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~  212 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK  212 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence              467888888877665  47999999999999999999999999998855   45788999999999999999999999


Q ss_pred             HHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        429 ACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       429 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      ..+|..+..    .+++++|+.++++++..+|..+.++..+|.+|...|++++|+..|+++++..|++  ..++..+|.+
T Consensus       213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~  290 (472)
T 4g1t_A          213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--AYLHCQIGCC  290 (472)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh--HHHHHHHHHH
Confidence            888876654    4678899999999999999999999999999999999999999999999999998  9999999988


Q ss_pred             HHHhhhcc-----------cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607        505 AILNALST-----------SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       505 ~~l~~l~~-----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                      +.......           ....+.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++.  .++++.
T Consensus       291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~--~~~~~~  368 (472)
T 4g1t_A          291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS--KELTPV  368 (472)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--SCCCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh--cCCCCh
Confidence            74110000           00123468899999999999999999999999999999999999999999998  555543


Q ss_pred             ---HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC------------------------CCCh
Q psy16607        574 ---DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID------------------------SSHG  626 (677)
Q Consensus       574 ---~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~------------------------p~~~  626 (677)
                         .++..+|.++.                  ...|++++|+..|++++++.                        |+++
T Consensus       369 ~~~~~~~~~~~~~~------------------~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~  430 (472)
T 4g1t_A          369 AKQLLHLRYGNFQL------------------YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS  430 (472)
T ss_dssp             HHHHHHHHHHHHHH------------------HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CT
T ss_pred             HHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence               34566665432                  27899999999999888764                        5667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      .++.++|.+|...|++++|+++|+++++++|.++.+...+|
T Consensus       431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             THHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            88999999999999999999999999999999999888776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-31  Score=272.27  Aligned_cols=292  Identities=10%  Similarity=0.046  Sum_probs=271.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      +...+..++..+...|++++|+..++++++.+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  100 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY  100 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            67788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607        436 FYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV  514 (677)
Q Consensus       436 ~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~  514 (677)
                      ...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++...|.+  ..++..+|.++.        
T Consensus       101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~--------  170 (330)
T 3hym_B          101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLYIGLEYG--------  170 (330)
T ss_dssp             HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--SHHHHHHHHHHH--------
T ss_pred             HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc--HHHHHHHHHHHH--------
Confidence            9999 89999999999999999999999999999999999999999999999999987  788888999998        


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHhh
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-------ENAADVWYNISHVAIITE  587 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------p~~~~~~~~l~~~~~~~~  587 (677)
                      ..|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++.....       |....++..+|.++.   
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~---  247 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR---  247 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH---
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH---
Confidence            8999999999999999999999999999999999999999999999999984311       666789999999999   


Q ss_pred             cCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        588 CSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       588 ~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                                      ..|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|+++++++|++..++..++
T Consensus       248 ----------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (330)
T 3hym_B          248 ----------------KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG  311 (330)
T ss_dssp             ----------------HTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred             ----------------HhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence                            9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HhcCCC
Q psy16607        668 VIS-NLVSVI  676 (677)
Q Consensus       668 ~~~-~~~G~i  676 (677)
                      .++ ...|+.
T Consensus       312 ~~~~~~~g~~  321 (330)
T 3hym_B          312 HCIEMYIGDS  321 (330)
T ss_dssp             HHHHTTTTC-
T ss_pred             HHHHHHhCch
Confidence            988 566654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.6e-31  Score=293.46  Aligned_cols=353  Identities=13%  Similarity=0.091  Sum_probs=311.2

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHH
Q psy16607        290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYI  368 (677)
Q Consensus       290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~  368 (677)
                      ......|..++..|++++|+..|++++...|. +...+..+|.++...|++++|+..|+++++.+| +..++..+|.++.
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            34556788899999999999999999999964 455558999999999999999999999999999 8999999999999


Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHH-------------------------------------------------------
Q psy16607        369 RLDQPIRAIDIGRNALDCYPNEVTI-------------------------------------------------------  393 (677)
Q Consensus       369 ~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------------  393 (677)
                      ..|++++|+..|+ ++...|+....                                                       
T Consensus       105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
T 3fp2_A          105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV  183 (537)
T ss_dssp             HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred             HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence            9999999999995 67666654322                                                       


Q ss_pred             -------------HHHHH--------HHHHHcCChhHHHHHHHHHHHhCcCCHH-------HHHHHHHHHHhCCChHHHH
Q psy16607        394 -------------MTEMA--------RIFEGLNNMPMSVKYYKLILKRDATCME-------AIACIGVNHFYNDQPEVAL  445 (677)
Q Consensus       394 -------------~~~la--------~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~  445 (677)
                                   ...++        ......|++++|+..|+++++.+|++..       ++..+|.++...|++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  263 (537)
T 3fp2_A          184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ  263 (537)
T ss_dssp             CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence                         11121        1222335899999999999999999855       5778889999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHH
Q psy16607        446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLF  525 (677)
Q Consensus       446 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~  525 (677)
                      ..+++++...|. ..++..+|.++...|++++|+.+|++++...|++  ..++..+|.++.        ..|++++|+..
T Consensus       264 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~  332 (537)
T 3fp2_A          264 VLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYF--------ILQDYKNAKED  332 (537)
T ss_dssp             HHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHH
T ss_pred             HHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHH--------hcCCHHHHHHH
Confidence            999999999999 9999999999999999999999999999999998  999999999998        99999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607        526 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI  605 (677)
Q Consensus       526 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~  605 (677)
                      |+++++.+|.+..++..+|.++...|++++|+.+|++++.  ..|++..++..+|.++.                   ..
T Consensus       333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~  391 (537)
T 3fp2_A          333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILT-------------------DR  391 (537)
T ss_dssp             HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH-------------------HT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------Hh
Confidence            9999999999999999999999999999999999999999  88999999999999999                   99


Q ss_pred             CCHHHHHHHHHHHHccCCCChH------HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        606 SDTRLAIQCLHLALSIDSSHGL------SQNNLAVLEARE----------GHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       606 g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      |++++|+..|+++++..|.+..      .+..+|.++...          |++++|+..|+++++.+|++..+++++|.+
T Consensus       392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  471 (537)
T 3fp2_A          392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL  471 (537)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999998876543      366778999999          999999999999999999999999999999


Q ss_pred             HHhcCCC
Q psy16607        670 SNLVSVI  676 (677)
Q Consensus       670 ~~~~G~i  676 (677)
                      +...|+.
T Consensus       472 ~~~~g~~  478 (537)
T 3fp2_A          472 KLQMEKI  478 (537)
T ss_dssp             HHHTTCH
T ss_pred             HHHhccH
Confidence            9999974

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.98  E-value=2.3e-30  Score=265.06  Aligned_cols=287  Identities=16%  Similarity=0.119  Sum_probs=272.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16607        326 WKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL  404 (677)
Q Consensus       326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  404 (677)
                      ++..+|..++..|++++|+..|+++++.+| +..++..++.++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV  103 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            337899999999999999999999999998 7888889999999999999999999999999999999999999999999


Q ss_pred             C-ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        405 N-NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE  483 (677)
Q Consensus       405 g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  483 (677)
                      | ++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++
T Consensus       104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (330)
T 3hym_B          104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS  183 (330)
T ss_dssp             CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHhccCHH
Q psy16607        484 RALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG---------LYNAELFNNLALCCFYSQQYD  554 (677)
Q Consensus       484 ~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~  554 (677)
                      +++...|.+  ..++..+|.++.        ..|++++|+..++++++..         |..+.++..+|.++...|+++
T Consensus       184 ~al~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          184 QALSIAPED--PFVMHEVGVVAF--------QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHTTCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCCCC--hHHHHHHHHHHH--------HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            999999998  999999999998        9999999999999999876         677889999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607        555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  634 (677)
Q Consensus       555 ~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  634 (677)
                      +|+.+|+++++  ..|++..++..+|.++.                   ..|++++|+.+|+++++++|+++.++..++.
T Consensus       254 ~A~~~~~~a~~--~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          254 EALDYHRQALV--LIPQNASTYSAIGYIHS-------------------LMGNFENAVDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             HHHHHHHHHHH--HSTTCSHHHHHHHHHHH-------------------HHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHh--hCccchHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence            99999999999  88999999999999999                   9999999999999999999999999999999


Q ss_pred             HH-HHcCCHH
Q psy16607        635 LE-AREGHIE  643 (677)
Q Consensus       635 ~~-~~~g~~~  643 (677)
                      ++ ...|+.+
T Consensus       313 ~~~~~~g~~~  322 (330)
T 3hym_B          313 CIEMYIGDSE  322 (330)
T ss_dssp             HHHTTTTC--
T ss_pred             HHHHHhCchh
Confidence            88 5666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=2.5e-30  Score=269.43  Aligned_cols=293  Identities=14%  Similarity=0.073  Sum_probs=262.4

Q ss_pred             HHHHcCCHHHHHH-HHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        333 CYFSLGLIREAQQ-QFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       333 ~~~~~g~~~~A~~-~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      ++...|+|++|+. .|++++...|     ....++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5566789999999 9999988766     256789999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH----------------HHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN----------------NLALCCF  470 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~la~~~~  470 (677)
                      +++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999999999999998876664                466666 


Q ss_pred             HcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q psy16607        471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  550 (677)
Q Consensus       471 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  550 (677)
                      ..|++++|+..|++++...|......++..+|.++.        ..|++++|+..|++++..+|.++.++..+|.++...
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  264 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN--------LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG  264 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence            999999999999999999999212899999999998        999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-----
Q psy16607        551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-----  625 (677)
Q Consensus       551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-----  625 (677)
                      |++++|+.+|++++.  ..|++..++..+|.++.                   ..|++++|+..|++++.+.|++     
T Consensus       265 g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~  323 (368)
T 1fch_A          265 NQSEEAVAAYRRALE--LQPGYIRSRYNLGISCI-------------------NLGAHREAVEHFLEALNMQRKSRGPRG  323 (368)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence            999999999999999  88999999999999999                   9999999999999999999887     


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        626 ------GLSQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       626 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                            ..+|..+|.++...|++++|..+++++++.
T Consensus       324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence                  899999999999999999999999887764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.3e-28  Score=262.70  Aligned_cols=323  Identities=13%  Similarity=0.005  Sum_probs=280.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----
Q psy16607        323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQ---------FT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCY-----  387 (677)
Q Consensus       323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----  387 (677)
                      ....+..+|.++..+|++++|+..|++++++         .| ...++.++|.+|..+|++++|+.++++++++.     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4456688999999999999999999999875         23 46788999999999999999999999998763     


Q ss_pred             ---CCcHHHHHHHHHHHHHc--CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCH
Q psy16607        388 ---PNEVTIMTEMARIFEGL--NNMPMSVKYYKLILKRDATCMEAIACIGVNHF---YNDQPEVALLFYRRLLQMGLYNA  459 (677)
Q Consensus       388 ---p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~  459 (677)
                         +..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.++.   ..++.++|++.++++++++|.++
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~  209 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ  209 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence               45678888888877665  47999999999999999999999999988754   46788999999999999999999


Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607        460 ELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY  535 (677)
Q Consensus       460 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~  535 (677)
                      .++..+|..+...    |++++|+.++++++..+|..  ..++..+|.++.        ..|++++|+..|+++++.+|+
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~p~  279 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYR--------RKDEPDKAIELLKKALEYIPN  279 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHH--------HcCchHHHHHHHHHHHHhCCC
Confidence            9999998776654    67889999999999999998  999999999998        999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhc-------------------cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607        536 NAELFNNLALCCFYS-------------------QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH  596 (677)
Q Consensus       536 ~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~  596 (677)
                      ++.++..+|.+|...                   +.+++|+..|++++.  .+|....++..+|.++.            
T Consensus       280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~------------  345 (472)
T 4g1t_A          280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHA------------  345 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHH------------
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHH------------
Confidence            999999999988653                   346889999999999  89999999999999999            


Q ss_pred             hhhhHHhcCCCHHHHHHHHHHHHccCCCChH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHh-----------------
Q psy16607        597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGL---SQNNLAVL-EAREGHIERASTYLQAAAAS-----------------  655 (677)
Q Consensus       597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~-----------------  655 (677)
                             ..|++++|+.+|++++++.|++..   ++..+|.+ +...|++++|+..|++++++                 
T Consensus       346 -------~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~  418 (472)
T 4g1t_A          346 -------LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI  418 (472)
T ss_dssp             -------HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred             -------HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                   999999999999999999887653   45667765 45789999999999998876                 


Q ss_pred             -------CCCChHHHHHHHHHHHhcCCC
Q psy16607        656 -------SPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       656 -------~p~~~~~~~~la~~~~~~G~i  676 (677)
                             +|+++.++.+||.++...|+.
T Consensus       419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~  446 (472)
T 4g1t_A          419 AKMRLSKNGADSEALHVLAFLQELNEKM  446 (472)
T ss_dssp             HHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence                   466678899999999998865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=2.5e-29  Score=261.89  Aligned_cols=279  Identities=15%  Similarity=0.095  Sum_probs=251.2

Q ss_pred             HHHHcCChHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q psy16607        366 VYIRLDQPIRAID-IGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ  440 (677)
Q Consensus       366 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  440 (677)
                      ++...|++++|+. .|++++...|.++    ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5566789999999 9999999888764    5689999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH----------------HHHHH
Q psy16607        441 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY----------------NISHV  504 (677)
Q Consensus       441 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------------~l~~~  504 (677)
                      +++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|.+  ...+.                .++.+
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987  33332                23433


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~  582 (677)
                      +         ..|++++|+..|+++++.+|.  ++.++..+|.++...|++++|+.+|++++.  ..|++..++..+|.+
T Consensus       192 ~---------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~  260 (368)
T 1fch_A          192 L---------SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGAT  260 (368)
T ss_dssp             H---------HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             h---------hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHH
Confidence            3         679999999999999999999  899999999999999999999999999999  889999999999999


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---  659 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  659 (677)
                      +.                   ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++++++.|++   
T Consensus       261 ~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  321 (368)
T 1fch_A          261 LA-------------------NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  321 (368)
T ss_dssp             HH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HH-------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence            99                   99999999999999999999999999999999999999999999999999999988   


Q ss_pred             --------hHHHHHHHHHHHhcCCC
Q psy16607        660 --------YETHYNQAVISNLVSVI  676 (677)
Q Consensus       660 --------~~~~~~la~~~~~~G~i  676 (677)
                              ..++.++|.++..+|+.
T Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          322 RGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             cccccchhhHHHHHHHHHHHHhCCh
Confidence                    89999999999999974

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=2.3e-28  Score=254.57  Aligned_cols=267  Identities=13%  Similarity=0.124  Sum_probs=236.5

Q ss_pred             HHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        378 DIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       378 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      ..+.+.+...+.++    ..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44445444555444    45899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH----------HHHHHHHhhhcccccCCCHHHHH
Q psy16607        454 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN----------ISHVAILNALSTSVYNDQPEVAL  523 (677)
Q Consensus       454 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------l~~~~~l~~l~~~~~~~~~~~A~  523 (677)
                      .+|.+..++..+|.++...|++++|+.+|++++...|++  ...+..          ++.++.        ..|++++|+
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~~A~  197 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY--KYLVKNKKGSPGLTRRMSKSPV--------DSSVLEGVK  197 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HCC---------------------------CCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc--hHHHhhhccchHHHHHHHHHHh--------hhhhHHHHH
Confidence            999999999999999999999999999999999998876  444444          477776        899999999


Q ss_pred             HHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607        524 LFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF  601 (677)
Q Consensus       524 ~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~  601 (677)
                      ..|+++++.+|.  ++.++..+|.++...|++++|+.+|++++.  ..|++..+|..+|.++.                 
T Consensus       198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-----------------  258 (365)
T 4eqf_A          198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLA-----------------  258 (365)
T ss_dssp             HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-----------------
Confidence            999999999999  999999999999999999999999999999  89999999999999999                 


Q ss_pred             HhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHH
Q psy16607        602 IQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY------------LYETHYNQAVI  669 (677)
Q Consensus       602 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~  669 (677)
                        ..|++++|+..|+++++++|+++.++..+|.++...|++++|+.+|++++++.|+            +..+|..++.+
T Consensus       259 --~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~  336 (365)
T 4eqf_A          259 --NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA  336 (365)
T ss_dssp             --HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred             --HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence              9999999999999999999999999999999999999999999999999999987            36789999999


Q ss_pred             HHhcCC
Q psy16607        670 SNLVSV  675 (677)
Q Consensus       670 ~~~~G~  675 (677)
                      +..+|.
T Consensus       337 ~~~~g~  342 (365)
T 4eqf_A          337 LSLMDQ  342 (365)
T ss_dssp             HHHHTC
T ss_pred             HHHcCc
Confidence            998886

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=2.6e-28  Score=253.05  Aligned_cols=256  Identities=11%  Similarity=0.057  Sum_probs=179.0

Q ss_pred             HccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhCcCCHHHH
Q psy16607        351 LNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN-MPMSVKYYKLILKRDATCMEAI  428 (677)
Q Consensus       351 l~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  428 (677)
                      +...| +..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            33444 556666666666666666666666666666666666666666666666664 6666666666666666666666


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Q psy16607        429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILN  508 (677)
Q Consensus       429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~  508 (677)
                      +++|.++...|++++|+..|+++++++|.+..+|+++|.++...|++++|+.+|+++++++|++  ..+|+++|      
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~lg------  241 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRY------  241 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHH------
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHH------
Confidence            6666666666666666666666666666555555555555555555555555555555555554  44555444      


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-ccCHHHH-----HHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607        509 ALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-SQQYDMV-----VTCFERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       509 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~p~~~~~~~~l~~~  582 (677)
                                                          .++.. .|.+++|     +.+|++++.  .+|++..+|++++.+
T Consensus       242 ------------------------------------~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~l  283 (382)
T 2h6f_A          242 ------------------------------------FVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGI  283 (382)
T ss_dssp             ------------------------------------HHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence                                                44444 3333444     688888888  889999999999998


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCC--CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---------HIERASTYLQA  651 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~  651 (677)
                      +.                   ..|  ++++|++.++++ +.+|+++.++..+|.+|.++|         .+++|+.+|++
T Consensus       284 l~-------------------~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~  343 (382)
T 2h6f_A          284 LQ-------------------DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI  343 (382)
T ss_dssp             HT-------------------TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HH-------------------ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            87                   777  689999999998 999999999999999999985         35999999999


Q ss_pred             H-HHhCCCChHHHHHHHHHHHh
Q psy16607        652 A-AASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       652 a-l~~~p~~~~~~~~la~~~~~  672 (677)
                      + ++++|.....|..++..+..
T Consensus       344 l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          344 LAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHH
Confidence            9 99999999999999988754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=1.7e-28  Score=255.63  Aligned_cols=269  Identities=12%  Similarity=0.041  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      ...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT  144 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34466666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFN----------NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      ..|++++|+..|+++++..|.+...+.          .+|.++...|++++|+.+|++++...|....+.++..+|.++.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            666666666666666666665444433          3477777777777788777777777777211777777777777


Q ss_pred             HhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Q psy16607        507 LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIIT  586 (677)
Q Consensus       507 l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~  586 (677)
                              ..|++++|+..|+++++..|.++.+|..+|.++...|++++|+.+|++++.  .+|++..++..+|.++.  
T Consensus       225 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~--  292 (365)
T 4eqf_A          225 --------LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCI--  292 (365)
T ss_dssp             --------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--
T ss_pred             --------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHH--
Confidence                    777888888888888888888888888888888888888888888888887  67777888888888877  


Q ss_pred             hcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        587 ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------------HGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       587 ~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                                       ..|++++|+.+|++++++.|+            +..+|..++.++...|+.+.|....++.+.
T Consensus       293 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          293 -----------------NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             -----------------HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             -----------------HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence                             888888888888888877765            367899999999999999999888776443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=1.1e-27  Score=244.73  Aligned_cols=271  Identities=14%  Similarity=0.076  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      ..++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHH
Q psy16607        438 NDQPEVALLFYRRLLQMGLYNAELFNNL--------------AL-CCFYSQQYDMVVTCFERALSLALNENAADVWYNIS  502 (677)
Q Consensus       438 ~g~~~~A~~~~~~al~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  502 (677)
                      .|++++|+..+++++...|.+...+..+              +. ++...|++++|+..+++++...|.+  ..++..+|
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la  179 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND--AQLHASLG  179 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHH
Confidence            5555555555555555555555444444              55 5777888888888888888888887  88888888


Q ss_pred             HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607        503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       503 ~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~  582 (677)
                      .++.        ..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++.  ..|++..++..+|.+
T Consensus       180 ~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          180 VLYN--------LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVS  249 (327)
T ss_dssp             HHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHH--------HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Confidence            8887        889999999999999999999999999999999999999999999999998  789999999999999


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------------HGLSQNNLAVLEAREGHIERASTYLQ  650 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~  650 (677)
                      +.                   ..|++++|+..|++++...|.            +..++..+|.++...|++++|...++
T Consensus       250 ~~-------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          250 YS-------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HH-------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HH-------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            98                   999999999999999999998            78999999999999999999999999


Q ss_pred             HHHHhCCCC
Q psy16607        651 AAAASSPYL  659 (677)
Q Consensus       651 ~al~~~p~~  659 (677)
                      ++++..|+.
T Consensus       311 ~~l~~~~~~  319 (327)
T 3cv0_A          311 QNVEPFAKE  319 (327)
T ss_dssp             CCSHHHHHH
T ss_pred             HHHHhcchh
Confidence            888776543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=2.4e-27  Score=245.71  Aligned_cols=260  Identities=9%  Similarity=0.009  Sum_probs=217.7

Q ss_pred             HHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHH
Q psy16607        315 STKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ-PIRAIDIGRNALDCYPNEVT  392 (677)
Q Consensus       315 a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~  392 (677)
                      ++...| .....+..+|.++...|++++|+..|++++..+| +..+|..+|.++..+|+ +++|+..|+++++++|++..
T Consensus        89 ai~~~p-~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~  167 (382)
T 2h6f_A           89 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ  167 (382)
T ss_dssp             EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhCCh-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence            455564 3445558999999999999999999999999999 89999999999999997 99999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-  471 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-  471 (677)
                      +|+.+|.++..+|++++|+..|+++++++|++..+|+++|.++...|++++|+.+|+++++++|.+..+|+++|.++.. 
T Consensus       168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCHHHH-----HHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        472 SQQYDMV-----VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  546 (677)
Q Consensus       472 ~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  546 (677)
                      .|.+++|     +.+|++++.++|++  ..+|+.++.++.        ..|.                            
T Consensus       248 ~~~~~eA~~~~el~~~~~Al~l~P~~--~~a~~~l~~ll~--------~~g~----------------------------  289 (382)
T 2h6f_A          248 TGYNDRAVLEREVQYTLEMIKLVPHN--ESAWNYLKGILQ--------DRGL----------------------------  289 (382)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHT--------TTCG----------------------------
T ss_pred             cCcchHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH--------ccCc----------------------------
Confidence            5554666     46666666666666  666666666654        3331                            


Q ss_pred             HHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC--------CC-HHHHHHHHHH
Q psy16607        547 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI--------SD-TRLAIQCLHL  617 (677)
Q Consensus       547 ~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~--------g~-~~~A~~~~~~  617 (677)
                          +++++|+..++++ +  .+|++..++..+|.+|.                   .+        ++ +++|+.+|++
T Consensus       290 ----~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~-------------------~~~~~~~~~~~~~~~~A~~~~~~  343 (382)
T 2h6f_A          290 ----SKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYE-------------------DMLENQCDNKEDILNKALELCEI  343 (382)
T ss_dssp             ----GGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHH-------------------HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             ----cchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHH-------------------HHhcccccchHHHHHHHHHHHHH
Confidence                1345555555554 3  55666666666666665                   44        23 5899999999


Q ss_pred             H-HccCCCChHHHHHHHHHHHHc
Q psy16607        618 A-LSIDSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       618 a-l~~~p~~~~~~~~la~~~~~~  639 (677)
                      + ++++|.....|..++..+...
T Consensus       344 l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          344 LAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHHH
Confidence            9 999999999999999887654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=2.3e-24  Score=233.75  Aligned_cols=331  Identities=14%  Similarity=0.119  Sum_probs=246.7

Q ss_pred             HHHHHHHHHhc----ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCHHHHHH
Q psy16607        291 AKYLFEYLYHH----ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFS----LGLIREAQQQFNSALNQFTDIEAFIR  362 (677)
Q Consensus       291 a~~l~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  362 (677)
                      +...++.+|..    .+++++|+.+|+++.+..   +...++.+|.+|..    .+++++|+.+|+++.+.. +..+++.
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~  116 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQN  116 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence            44455666666    678888888888887653   44555778888887    788888888888877643 6677778


Q ss_pred             HHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        363 MIRVYIR----LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       363 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      +|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+++|+++++.  .++.+++.+|.+
T Consensus       117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~  192 (490)
T 2xm6_A          117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM  192 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence            8888877    77888888888887665  467778888888877    67888888888888765  467788888888


Q ss_pred             HHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        435 HFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       435 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      |..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++++..  +  ..+++.+|.++.
T Consensus       193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~y~  266 (490)
T 2xm6_A          193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--N--SIAQFRLGYILE  266 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--C--HHHHHHHHHHHH
T ss_pred             HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C--HHHHHHHHHHHH
Confidence            877    77888888888887765  467778888888876    778888888888877653  2  667777887776


Q ss_pred             Hhhhccccc----CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607        507 LNALSTSVY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----QQYDMVVTCFERALSLALNENAADVWY  577 (677)
Q Consensus       507 l~~l~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~p~~~~~~~  577 (677)
                              .    .+++++|+.+|+++.+.  .++.+++.+|.++...     +++++|+.+|+++++    ..+..+++
T Consensus       267 --------~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~----~~~~~a~~  332 (490)
T 2xm6_A          267 --------QGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE----QGDATAQA  332 (490)
T ss_dssp             --------HTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred             --------CCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh----cCCHHHHH
Confidence                    4    67788888888887754  5667778888888777     788888888888776    24567777


Q ss_pred             HHHHHHHHhhcCCCCcccchhhhHHhcCC---CHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy16607        578 NISHVAIITECSPFSFSTHTSYLFIQGIS---DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQ  650 (677)
Q Consensus       578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~  650 (677)
                      .+|.+|.                   ..|   ++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+
T Consensus       333 ~lg~~y~-------------------~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  391 (490)
T 2xm6_A          333 NLGAIYF-------------------RLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR  391 (490)
T ss_dssp             HHHHHHH-------------------HSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHH-------------------hCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8887776                   545   677777777777765  467777777777777    777777777777


Q ss_pred             HHHHhCCCChHHHHHHHHHHHh
Q psy16607        651 AAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       651 ~al~~~p~~~~~~~~la~~~~~  672 (677)
                      ++++..  ++.++++||.+|..
T Consensus       392 ~A~~~~--~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          392 KAAEQG--LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHhCC--CHHHHHHHHHHHHc
Confidence            777653  57777777777765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=9.5e-27  Score=237.74  Aligned_cols=265  Identities=16%  Similarity=0.162  Sum_probs=242.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      +.+|..+...|++++|+..|+++++..| +..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|+
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence            6889999999999999999999999888 888899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACI--------------GV-NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  471 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  471 (677)
                      +++|+..|++++...|.+...+..+              +. ++...|++++|+..++++++..|.++.++..+|.++..
T Consensus       105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  184 (327)
T 3cv0_A          105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL  184 (327)
T ss_dssp             HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            9999999999999998887776666              66 68888999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q psy16607        472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  551 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  551 (677)
                      .|++++|+.++++++...|++  ..++..+|.++.        ..|++++|+..|+++++..|.+..++..+|.++...|
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDD--AQLWNKLGATLA--------NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999998  999999999998        9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        552 QYDMVVTCFERALSLALNEN------------AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       552 ~~~~A~~~~~~al~~~~~p~------------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      ++++|+.+|++++.  ..|+            ...+|..++.++.                   ..|++++|...+++++
T Consensus       255 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          255 QYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLN-------------------VMNRPDLVELTYAQNV  313 (327)
T ss_dssp             CHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHH-------------------HTTCHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHH
Confidence            99999999999999  6787            7899999999999                   9999999999998877


Q ss_pred             ccCC
Q psy16607        620 SIDS  623 (677)
Q Consensus       620 ~~~p  623 (677)
                      +..|
T Consensus       314 ~~~~  317 (327)
T 3cv0_A          314 EPFA  317 (327)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            6544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=2.6e-24  Score=233.27  Aligned_cols=331  Identities=14%  Similarity=0.096  Sum_probs=296.5

Q ss_pred             HHHHHHHHHhc----ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCHHHHHH
Q psy16607        291 AKYLFEYLYHH----ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFS----LGLIREAQQQFNSALNQFTDIEAFIR  362 (677)
Q Consensus       291 a~~l~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  362 (677)
                      +...++.+|..    .+++++|+.+|+++.+..   ....++.+|.+|..    .+++++|+.+|+++.... +..+++.
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~  152 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQS  152 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence            56677888888    899999999999999865   55566899999999    899999999999998753 7889999


Q ss_pred             HHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        363 MIRVYIR----LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       363 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      +|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+
T Consensus       153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~  228 (490)
T 2xm6_A          153 MGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADM  228 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence            9999998    88999999999999886  579999999999998    89999999999999875  468899999999


Q ss_pred             HHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        435 HFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       435 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      |..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .+  ..+++.+|.++.
T Consensus       229 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~--~~a~~~Lg~~y~  302 (490)
T 2xm6_A          229 YYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN--SDGQYYLAHLYD  302 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC--HHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC--HHHHHHHHHHHH
Confidence            997    89999999999999876  578899999999999    99999999999999876  33  789999999997


Q ss_pred             HhhhcccccC-----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhccchHHHHHH
Q psy16607        507 LNALSTSVYN-----DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYN  578 (677)
Q Consensus       507 l~~l~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~p~~~~~~~~  578 (677)
                              ..     +++++|+.+|+++++.  .++.+++.+|.++...|   ++++|+.+|+++++  .  .++.++++
T Consensus       303 --------~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~--~--~~~~a~~~  368 (490)
T 2xm6_A          303 --------KGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA--K--GEKAAQFN  368 (490)
T ss_dssp             --------HCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH--T--TCHHHHHH
T ss_pred             --------cCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH--C--CCHHHHHH
Confidence                    55     8999999999999986  46789999999999866   89999999999998  3  67899999


Q ss_pred             HHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy16607        579 ISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQ  650 (677)
Q Consensus       579 l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~  650 (677)
                      +|.+|.                   .    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+
T Consensus       369 Lg~~y~-------------------~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  427 (490)
T 2xm6_A          369 LGNALL-------------------QGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD  427 (490)
T ss_dssp             HHHHHH-------------------HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHH-------------------cCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            999998                   7    89999999999999986  468999999999999    899999999999


Q ss_pred             HHHHhCCC---ChHHHHHHHHHH
Q psy16607        651 AAAASSPY---LYETHYNQAVIS  670 (677)
Q Consensus       651 ~al~~~p~---~~~~~~~la~~~  670 (677)
                      ++++.+|+   ++.+..+++.++
T Consensus       428 ~A~~~~~~~~~~~~a~~~l~~~~  450 (490)
T 2xm6_A          428 TASTNDMNLFGTENRNITEKKLT  450 (490)
T ss_dssp             HHHHHHCCHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCCCcCCHHHHHHHHhcC
Confidence            99999954   888888877654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=5.5e-26  Score=225.88  Aligned_cols=255  Identities=10%  Similarity=0.046  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC----HHHHHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGV  433 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~  433 (677)
                      +.++..|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++. .|.+    ..++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            34555566666666666666666666666666655666666666666666666666666655 2222    333555555


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHH-HHHHHhhhcc
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS-HVAILNALST  512 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~-~~~~l~~l~~  512 (677)
                      ++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.+  ..+++.+| .++.      
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~------  154 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAYYY------  154 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHHHH------
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHHHH------
Confidence            55555555555555555555555555555555555555555555555555555555554  55555555 3332      


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                         .+++++|+..|+++++.+|++..++..+|.++...++                                        
T Consensus       155 ---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~----------------------------------------  191 (272)
T 3u4t_A          155 ---NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP----------------------------------------  191 (272)
T ss_dssp             ---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST----------------------------------------
T ss_pred             ---HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc----------------------------------------
Confidence               2344445554444444444444444444444444444                                        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccC---CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSID---SS-----HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                                  ..++++|+..|+++++..   |+     ...++..+|.++...|++++|+.+|+++++++|+++.++-
T Consensus       192 ------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  259 (272)
T 3u4t_A          192 ------------DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID  259 (272)
T ss_dssp             ------------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ------------chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence                        000444555555555443   22     2367889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q psy16607        665 NQAVISNLVSVI  676 (677)
Q Consensus       665 ~la~~~~~~G~i  676 (677)
                      .++.+....|..
T Consensus       260 ~l~~~~~~~~~~  271 (272)
T 3u4t_A          260 GLKMKLEHHHHH  271 (272)
T ss_dssp             HHC---------
T ss_pred             HhhhhhcccccC
Confidence            998887766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.6e-25  Score=217.64  Aligned_cols=241  Identities=11%  Similarity=0.013  Sum_probs=193.3

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------HHHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------AELF  462 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~  462 (677)
                      ....+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|..       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            34566677777777777777777777777777 667777777777777777777777777777766655       5777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q psy16607        463 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNN  542 (677)
Q Consensus       463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  542 (677)
                      ..+|.++...|++++|+.+|++++...|.   .       .++.        ..|++++|+..+++++..+|.++.++..
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~-------~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~  144 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---A-------DILT--------KLRNAEKELKKAEAEAYVNPEKAEEARL  144 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---H-------HHHH--------HHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch---h-------HHHH--------HHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            77788888888888888888888777665   2       2333        5567788888888888888888888888


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        543 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       543 la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                      +|.++...|++++|+.+|++++.  ..|.+..++..+|.++.                   ..|++++|+..|+++++.+
T Consensus       145 ~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          145 EGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALA-------------------KLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHhC
Confidence            88888889999999999999988  78888888999999888                   8999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHH
Q psy16607        623 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS------PYLYETHYNQAVIS  670 (677)
Q Consensus       623 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~  670 (677)
                      |+++.++..+|.++...|++++|+..|+++++++      |++..++..++.++
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence            9999999999999999999999999999999998      88888887777653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=1.2e-24  Score=218.07  Aligned_cols=276  Identities=13%  Similarity=0.126  Sum_probs=213.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607        331 GKCYFSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       331 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      .+..+..|+|++|+..+++.....|  ..+....++++|..+|++++|+..++.   .+|....++..++..+...++++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            3456778888888888887777666  245777778888888888888877655   25556677778888888888888


Q ss_pred             HHHHHHHHHHHh--CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        409 MSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       409 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      +|++.+++++..  +|+++.+++.+|.++...|++++|++.+++     |.+..++..+|.++..+|++++|+..|++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            888888888765  588888888888888888888888888887     7888888888888888888888888888888


Q ss_pred             hhhcccchHHHHHHHH--HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy16607        487 SLALNENAADVWYNIS--HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  564 (677)
Q Consensus       487 ~~~p~~~~~~~~~~l~--~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  564 (677)
                      +.+|++  .......+  .++.        ..|++++|+..|+++++..|+++.+++.+|.++...|++++|+..|++++
T Consensus       158 ~~~p~~--~~~~l~~a~~~l~~--------~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          158 DQDEDA--TLTQLATAWVSLAA--------GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHCTTC--HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhCcCc--HHHHHHHHHHHHHh--------CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888776  33322222  2222        45788888888888888888888888888888888888888888888888


Q ss_pred             HHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH-HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHH
Q psy16607        565 SLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL-AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE  643 (677)
Q Consensus       565 ~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  643 (677)
                      .  .+|+++.++.++|.++.                   ..|++.+ +..+++++++++|+++.+..    +..+.+.++
T Consensus       228 ~--~~p~~~~~l~~l~~~~~-------------------~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd  282 (291)
T 3mkr_A          228 D--KDSGHPETLINLVVLSQ-------------------HLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFD  282 (291)
T ss_dssp             H--HCTTCHHHHHHHHHHHH-------------------HTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHH
T ss_pred             H--hCCCCHHHHHHHHHHHH-------------------HcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHH
Confidence            8  78888888888888887                   8888765 46788888888888876543    445556666


Q ss_pred             HHHHHH
Q psy16607        644 RASTYL  649 (677)
Q Consensus       644 ~A~~~~  649 (677)
                      ++..-|
T Consensus       283 ~~~~~~  288 (291)
T 3mkr_A          283 RLVLQY  288 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            665544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=2.6e-25  Score=220.97  Aligned_cols=256  Identities=14%  Similarity=0.141  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Q psy16607        327 KVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE----VTIMTEMARIF  401 (677)
Q Consensus       327 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  401 (677)
                      ++.+|.+++..|++++|+..|+++++.+| +..++..+|.++...|++++|+..++++++ .|.+    ..++..+|.++
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence            36899999999999999999999999998 778999999999999999999999999999 4433    44589999999


Q ss_pred             HHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       402 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  481 (677)
                      ...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|......+++++|+..
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999555566799999999


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607        482 FERALSLALNENAADVWYNISHVAILNALSTSVYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       482 ~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      |+++++..|++  ..++..+|.++.        ..++   +++|+..|+++++.....+..                   
T Consensus       165 ~~~a~~~~p~~--~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------  215 (272)
T 3u4t_A          165 FVKVLELKPNI--YIGYLWRARANA--------AQDPDTKQGLAKPYYEKLIEVCAPGGAK-------------------  215 (272)
T ss_dssp             HHHHHHHSTTC--HHHHHHHHHHHH--------HHSTTCSSCTTHHHHHHHHHHHGGGGGG-------------------
T ss_pred             HHHHHHhCccc--hHHHHHHHHHHH--------HcCcchhhHHHHHHHHHHHHHHhccccc-------------------
Confidence            99999999998  899999999987        5565   666666666665432110000                   


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607        559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  638 (677)
Q Consensus       559 ~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  638 (677)
                               ..+....++..+|.++.                   ..|++++|+.+|+++++++|+++.++..++.+...
T Consensus       216 ---------~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          216 ---------YKDELIEANEYIAYYYT-------------------INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             ---------GHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             ---------chHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence                     00112467888999998                   99999999999999999999999999988877655


Q ss_pred             cC
Q psy16607        639 EG  640 (677)
Q Consensus       639 ~g  640 (677)
                      .+
T Consensus       268 ~~  269 (272)
T 3u4t_A          268 HH  269 (272)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=1.5e-23  Score=229.57  Aligned_cols=343  Identities=10%  Similarity=0.027  Sum_probs=281.8

Q ss_pred             hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHH-HHHcCChHHHHH
Q psy16607        300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRV-YIRLDQPIRAID  378 (677)
Q Consensus       300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~-~~~~g~~~~A~~  378 (677)
                      ...|++++|..+|+++++..|.+...| ..++..+...|++++|...|++++...|+...|..++.. ....|++++|.+
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~~~~~w-~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~  101 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPSSGRFW-KLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE  101 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHH
Confidence            347999999999999999997666666 789999999999999999999999999988888888853 445677777665


Q ss_pred             ----HHHHHHHc---CCCcHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHhCcCCH--HHHHHHHH-------
Q psy16607        379 ----IGRNALDC---YPNEVTIMTEMARIFEG---------LNNMPMSVKYYKLILKRDATCM--EAIACIGV-------  433 (677)
Q Consensus       379 ----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~--~~~~~la~-------  433 (677)
                          .|++++..   +|.+..+|...+.....         .|++++|..+|+++++ .|...  ..|.....       
T Consensus       102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~  180 (530)
T 2ooe_A          102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI  180 (530)
T ss_dssp             HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch
Confidence                77777654   45677888887777665         6888999999999888 45431  12211100       


Q ss_pred             ----------------------------------------------------------HHHh----CCCh----HHHHHH
Q psy16607        434 ----------------------------------------------------------NHFY----NDQP----EVALLF  447 (677)
Q Consensus       434 ----------------------------------------------------------~~~~----~g~~----~~A~~~  447 (677)
                                                                                ....    .++.    ..++..
T Consensus       181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~  260 (530)
T 2ooe_A          181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA  260 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence                                                                      0000    0122    367789


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hhcccchHHHHHHHHHHHHHhhhcc
Q psy16607        448 YRRLLQMGLYNAELFNNLALCCFY-------SQQYD-------MVVTCFERALS-LALNENAADVWYNISHVAILNALST  512 (677)
Q Consensus       448 ~~~al~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~l~~~~~l~~l~~  512 (677)
                      |++++...|.++.+|..+|.++..       .|+++       +|+..|+++++ ..|++  ..+|..++.++.      
T Consensus       261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--~~l~~~~~~~~~------  332 (530)
T 2ooe_A          261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEE------  332 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHH------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH------
Confidence            999999999999999999999987       79987       99999999997 78988  999999999998      


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHhhcCC
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIITECSP  590 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~-~~~~~~~p  590 (677)
                        ..|++++|...|+++++..|.++ .+|..++.++.+.|++++|+..|+++++  ..|.....+...+.+ +.      
T Consensus       333 --~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~------  402 (530)
T 2ooe_A          333 --SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYY------  402 (530)
T ss_dssp             --HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHH------
T ss_pred             --hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHH------
Confidence              89999999999999999999986 6999999999999999999999999998  666666666555544 33      


Q ss_pred             CCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH----HHHHH
Q psy16607        591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----THYNQ  666 (677)
Q Consensus       591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l  666 (677)
                                   ..|++++|...|+++++..|+++.+|..++.++...|+.++|+.+|++++...|.+++    .|...
T Consensus       403 -------------~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~  469 (530)
T 2ooe_A          403 -------------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  469 (530)
T ss_dssp             -------------HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred             -------------HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence                         6899999999999999999999999999999999999999999999999999876654    77666


Q ss_pred             HHHHHhcCC
Q psy16607        667 AVISNLVSV  675 (677)
Q Consensus       667 a~~~~~~G~  675 (677)
                      .......|+
T Consensus       470 ~~~e~~~G~  478 (530)
T 2ooe_A          470 LAFESNIGD  478 (530)
T ss_dssp             HHHHHHSSC
T ss_pred             HHHHHHcCC
Confidence            777777775

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.1e-24  Score=212.22  Aligned_cols=239  Identities=12%  Similarity=0.023  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-------HHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-------MEAIA  429 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  429 (677)
                      ...+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.+       ..++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            4566677777777777777777777777777 667777777777777777777777777777776655       56777


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhh
Q psy16607        430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNA  509 (677)
Q Consensus       430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~  509 (677)
                      .+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++...|..  ..++..+|.++.   
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~---  150 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYF---  150 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHH---
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHH---
Confidence            7777777777777777777777777665        455666777777777777777777776  777777777777   


Q ss_pred             hcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607        510 LSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS  589 (677)
Q Consensus       510 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~  589 (677)
                           ..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++.  .+|++..++..+|.++.     
T Consensus       151 -----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~-----  218 (258)
T 3uq3_A          151 -----TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQI-----  218 (258)
T ss_dssp             -----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-----
T ss_pred             -----HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHH-----
Confidence                 777777777777777777777777777788888788888888888888777  67777777777777777     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccC------CCChHHHHHHHHH
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSID------SSHGLSQNNLAVL  635 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~  635 (677)
                                    ..|++++|+..|+++++++      |.+..++..++.+
T Consensus       219 --------------~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          219 --------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             --------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             --------------HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence                          7788888888888877777      7776666666543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=5.5e-25  Score=231.94  Aligned_cols=294  Identities=13%  Similarity=0.108  Sum_probs=225.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------CcCCH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKR------DATCM  425 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~  425 (677)
                      ....+..+|.++...|++++|+..|+++++..|.+.    .++..+|.++...|++++|+.+|++++.+      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            344556666666666666666666666666666553    45666666666677777777776666655      23335


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q psy16607        426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQ--------------------YDMVV  479 (677)
Q Consensus       426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~  479 (677)
                      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            566777777777777777777777777654432      4577888888888888                    88888


Q ss_pred             HHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHh
Q psy16607        480 TCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFY  549 (677)
Q Consensus       480 ~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~  549 (677)
                      ..+++++.+.+..    ....++..+|.++.        ..|++++|+.+++++++..+...      .++..+|.++..
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHY--------LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            8888888763221    23678899999998        99999999999999997755433      389999999999


Q ss_pred             ccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC
Q psy16607        550 SQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH  625 (677)
Q Consensus       550 ~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~  625 (677)
                      .|++++|+.++++++.......    ...++..+|.++.                   ..|++++|+.+|++++.+.+..
T Consensus       240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-------------------LLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-------------------HhCcHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998432211    2678889999998                   9999999999999999875543


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHhcCCC
Q psy16607        626 ------GLSQNNLAVLEAREGHIERASTYLQAAAASSP------YLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       626 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~G~i  676 (677)
                            ..++..+|.++...|++++|+.+|++++++.+      ....++..++.++...|+.
T Consensus       301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence                  56889999999999999999999999999843      3367899999999988864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=4.8e-25  Score=211.23  Aligned_cols=200  Identities=14%  Similarity=0.065  Sum_probs=145.9

Q ss_pred             cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607        422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  501 (677)
Q Consensus       422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  501 (677)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++  ..+++.+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555  5555556


Q ss_pred             HHHHHHhhhcccccC-----------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607        502 SHVAILNALSTSVYN-----------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  570 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p  570 (677)
                      |.++.        ..           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++  .+ 
T Consensus        80 g~~~~--------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-  148 (217)
T 2pl2_A           80 SEAYV--------ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA--LE-  148 (217)
T ss_dssp             HHHHH--------HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-
T ss_pred             HHHHH--------HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cc-
Confidence            65555        45           9999999999999999999999999999999999999999999999999  67 


Q ss_pred             chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16607        571 NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ  650 (677)
Q Consensus       571 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  650 (677)
                      +++.++.++|.++.                   ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+
T Consensus       149 ~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          149 DTPEIRSALAELYL-------------------SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             CCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred             cchHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            89999999999999                   99999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q psy16607        651 AAA  653 (677)
Q Consensus       651 ~al  653 (677)
                      ++-
T Consensus       210 ~~~  212 (217)
T 2pl2_A          210 LEH  212 (217)
T ss_dssp             ---
T ss_pred             HHh
Confidence            864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=2.7e-24  Score=215.50  Aligned_cols=261  Identities=12%  Similarity=0.045  Sum_probs=233.9

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH
Q psy16607        365 RVYIRLDQPIRAIDIGRNALDCYPNE-VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEV  443 (677)
Q Consensus       365 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  443 (677)
                      +..+..|++.+|+..++++...+|++ .+....++.+|...|++++|+..++.   .+|....++..++..+...++.++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence            45667899999999999988888876 46778899999999999999998866   255567888899999999999999


Q ss_pred             HHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHH
Q psy16607        444 ALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV  521 (677)
Q Consensus       444 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~  521 (677)
                      |++.+++++..  +|+++.+++.+|.++...|++++|+..|++     |.+  ..++..++.++.        ..|++++
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~--------~~g~~~~  148 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--LECMAMTVQILL--------KLDRLDL  148 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHH--------HTTCHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHH--------HCCCHHH
Confidence            99999999986  699999999999999999999999999998     666  899999999998        9999999


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHH--HHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhh
Q psy16607        522 ALLFYRRLLQMGLYNAELFNNLA--LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSY  599 (677)
Q Consensus       522 A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~  599 (677)
                      |+..|+++++.+|++.......+  .++...|++++|+.+|+++++  ..|+++.+++++|.++.               
T Consensus       149 A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~---------------  211 (291)
T 3mkr_A          149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHM---------------  211 (291)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH---------------
Confidence            99999999999999865444333  344456899999999999999  79999999999999999               


Q ss_pred             hHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCChHHHH
Q psy16607        600 LFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER-ASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       600 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~  664 (677)
                          ..|++++|+..|+++++.+|++++++.++|.++...|+.++ +..+++++++++|+++.+.-
T Consensus       212 ----~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          212 ----AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             ----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence                99999999999999999999999999999999999999976 57899999999999987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=1.3e-24  Score=208.21  Aligned_cols=200  Identities=12%  Similarity=0.034  Sum_probs=170.7

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  467 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  467 (677)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            56777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        468 CCFYS-----------QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       468 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      ++...           |++++|+..|+++++++|++  ..++..+|.++.        ..|++++|+..|+++++.+ ++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-~~  150 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYA--------LLGERDKAEASLKQALALE-DT  150 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-CC
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH--------HcCChHHHHHHHHHHHhcc-cc
Confidence            88888           99999999999999999998  999999999998        9999999999999999999 99


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      +.++..+|.++...|++++|+..|+++++  .+|++..++..+|.++.                   ..|++++|+..|+
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~  209 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALL-------------------LKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-------------------C------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HccCHHHHHHHHH
Confidence            99999999999999999999999999999  89999999999999998                   9999999999998


Q ss_pred             HHH
Q psy16607        617 LAL  619 (677)
Q Consensus       617 ~al  619 (677)
                      ++-
T Consensus       210 ~~~  212 (217)
T 2pl2_A          210 LEH  212 (217)
T ss_dssp             ---
T ss_pred             HHh
Confidence            864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=229.11  Aligned_cols=295  Identities=16%  Similarity=0.170  Sum_probs=240.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcH
Q psy16607        323 DWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D----IEAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEV  391 (677)
Q Consensus       323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~  391 (677)
                      ....+..+|.++...|++++|+..|+++++..| +    ..++..+|.++...|++++|+.++++++..      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            344456788888888888888888888888777 3    467788888888888888888888888766      23446


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCC--------------------hHHHH
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEVAL  445 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~  445 (677)
                      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            678888888888889999988888888876542      4578888999999898                    88899


Q ss_pred             HHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhccccc
Q psy16607        446 LFYRRLLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVY  515 (677)
Q Consensus       446 ~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~  515 (677)
                      .++++++.+      .+....++..+|.++...|++++|+.++++++...+..    ....++..+|.++.        .
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------~  239 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--------F  239 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--------H
Confidence            888888875      23345678899999999999999999999999887654    12348889999998        9


Q ss_pred             CCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHH
Q psy16607        516 NDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAII  585 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~~~~l~~~~~~  585 (677)
                      .|++++|+..+++++...+..      ..++..+|.++...|++++|+.+|++++.....    +....++..+|.++. 
T Consensus       240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-  318 (406)
T 3sf4_A          240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT-  318 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred             cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-
Confidence            999999999999999776654      678999999999999999999999999985322    223678889999998 


Q ss_pred             hhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC------CChHHHHHHHHHHHHcCCHHH
Q psy16607        586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIER  644 (677)
Q Consensus       586 ~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~  644 (677)
                                        ..|++++|+.+|++++++.+      ....++..+|.++...|+...
T Consensus       319 ------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          319 ------------------ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             ------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ------------------HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence                              99999999999999998743      235788999999999997643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=1.3e-22  Score=222.09  Aligned_cols=330  Identities=12%  Similarity=0.055  Sum_probs=276.6

Q ss_pred             HHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q psy16607        312 AVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE  390 (677)
Q Consensus       312 ~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  390 (677)
                      ++++++.+|.+...| ..++.. ...|++++|...|+++++..| +...|..++..+.+.|++++|...|++++...| +
T Consensus         2 le~al~~~P~~~~~w-~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~   78 (530)
T 2ooe_A            2 AEKKLEENPYDLDAW-SILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H   78 (530)
T ss_dssp             HHHHHHHCTTCHHHH-HHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred             hhhHhhhCCCCHHHH-HHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence            677888887665555 677774 788999999999999999999 899999999999999999999999999999999 6


Q ss_pred             HHHHHHHHH-HHHHcCChhHHHH----HHHHHHHh---CcCCHHHHHHHHHHHHh---------CCChHHHHHHHHHHHH
Q psy16607        391 VTIMTEMAR-IFEGLNNMPMSVK----YYKLILKR---DATCMEAIACIGVNHFY---------NDQPEVALLFYRRLLQ  453 (677)
Q Consensus       391 ~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~  453 (677)
                      .++|..++. +....|++++|.+    .|++++..   +|.+...|...+.....         .|++++|..+|+++++
T Consensus        79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence            788888885 4456788888776    78887764   56678888888887765         6889999999999998


Q ss_pred             cCCCCH--HHHHHHHHH---------------------------------------------------------------
Q psy16607        454 MGLYNA--ELFNNLALC---------------------------------------------------------------  468 (677)
Q Consensus       454 ~~~~~~--~~~~~la~~---------------------------------------------------------------  468 (677)
                       .|...  ..|......                                                               
T Consensus       159 -~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~  237 (530)
T 2ooe_A          159 -NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI  237 (530)
T ss_dssp             -SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred             -chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence             45432  222111110                                                               


Q ss_pred             HHHc------CC----HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc-------CCCHH-------HHHH
Q psy16607        469 CFYS------QQ----YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY-------NDQPE-------VALL  524 (677)
Q Consensus       469 ~~~~------g~----~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~-------~~~~~-------~A~~  524 (677)
                      .+..      ++    ...++..|++++...|.+  +.+|+.++..+.        .       .|+++       +|+.
T Consensus       238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~--~~~w~~~~~~~~--------~~~~~~~~~g~~~~a~~~~~~A~~  307 (530)
T 2ooe_A          238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH--PDIWYEAAQYLE--------QSSKLLAEKGDMNNAKLFSDEAAN  307 (530)
T ss_dssp             HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH--------HHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhchhhhhccchhhhhhhhHHHHH
Confidence            0000      11    136678899999999998  999999999986        4       68887       9999


Q ss_pred             HHHHHHH-cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHhhcCCCCcccchhhhHH
Q psy16607        525 FYRRLLQ-MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA-DVWYNISHVAIITECSPFSFSTHTSYLFI  602 (677)
Q Consensus       525 ~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~l~~~~~~~~~~p~~~~~~~~~~~l  602 (677)
                      .|+++++ ..|++..+|..++.++...|++++|...|+++++  ..|.++ .+|..++.++.                  
T Consensus       308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~------------------  367 (530)
T 2ooe_A          308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFAR------------------  367 (530)
T ss_dssp             HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHH------------------
Confidence            9999997 8999999999999999999999999999999999  788775 68999999988                  


Q ss_pred             hcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        603 QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       603 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                       +.|++++|+..|+++++..|.....+...+.+ +...|++++|+.+|+++++..|+++.+|..++.++...|++
T Consensus       368 -~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          368 -RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             -HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred             -HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence             99999999999999999999888887777766 34699999999999999999999999999999999888864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=6.3e-24  Score=224.66  Aligned_cols=273  Identities=14%  Similarity=0.116  Sum_probs=189.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------CcCCHHHHHHH
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKR------DATCMEAIACI  431 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l  431 (677)
                      .+|..+...|++++|+..|+++++..|.+.    .++..+|.++...|++++|+.+|++++..      .+....++..+
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            334444444444444444444444444433    23444444444444444444444444444      23334455555


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhh
Q psy16607        432 GVNHFYNDQPEVALLFYRRLLQM------GLYNAELFNNLALCCFYSQQ-----------------YDMVVTCFERALSL  488 (677)
Q Consensus       432 a~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~  488 (677)
                      |.++...|++++|+.++++++..      .+....++..+|.++...|+                 +++|+.++++++.+
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            55555555555555555555554      23345566777777777777                 77777777777765


Q ss_pred             hccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhccCHHHHHH
Q psy16607        489 ALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       489 ~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~  558 (677)
                      .+..    ....++..+|.++.        ..|++++|+.+++++++..+...      .++..+|.++...|++++|+.
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYY--------LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            4221    23568899999998        99999999999999998766543      388999999999999999999


Q ss_pred             HHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC------hHH
Q psy16607        559 CFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH------GLS  628 (677)
Q Consensus       559 ~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~------~~~  628 (677)
                      +|++++......    ....++..+|.++.                   ..|++++|+.++++++.+.+..      ..+
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  345 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYT-------------------LLHEFNTAIEYHNRHLAIAQELGDRIGEARA  345 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence            999999843221    23578889999998                   9999999999999999875433      458


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        629 QNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       629 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      +..+|.++...|++++|+.+|++++++.+....
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence            899999999999999999999999999876543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.92  E-value=9.5e-24  Score=225.58  Aligned_cols=328  Identities=12%  Similarity=0.004  Sum_probs=241.8

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCHHHHHHHHHHHHHcC
Q psy16607        295 FEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLI---REAQQQFNSALNQFTDIEAFIRMIRVYIRLD  371 (677)
Q Consensus       295 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~la~~~~~~g  371 (677)
                      ++..+++.|++++|+.+|+++.+.. .  ...++.+|.++...|++   ++|+.+|+++++.  ++.+++.+|.++...+
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g-~--~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG-Y--SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-C--CTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence            3455667899999999999998875 2  23336899999999998   9999999999977  7888999999777766


Q ss_pred             -----ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH---HHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHH
Q psy16607        372 -----QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS---VKYYKLILKRDATCMEAIACIGVNHFYNDQPEV  443 (677)
Q Consensus       372 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  443 (677)
                           ++++|+.+|+++++..  ++.+++.+|.+|...+...++   .+.+.++..  +.++.+++.+|.+|...+.+++
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCccc
Confidence                 7899999999999854  455899999999988765544   444444433  3457889999999999986665


Q ss_pred             HHHH----HHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607        444 ALLF----YRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN  516 (677)
Q Consensus       444 A~~~----~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~  516 (677)
                      +...    ++.+...   ++.+++.+|.+|...|   ++++|+..|+++.+..+..  ...++++|.++. ...   ...
T Consensus       160 ~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~--a~~~~~Lg~~y~-~g~---~~~  230 (452)
T 3e4b_A          160 HLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT--AQRVDSVARVLG-DAT---LGT  230 (452)
T ss_dssp             GHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHT-CGG---GSS
T ss_pred             CHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHh-CCC---CCC
Confidence            5554    4444333   3449999999999999   9999999999999998887  888899999985 000   123


Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-H--HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALC-C--FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      +++++|+.+|+++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+    .+++.+++++|.+|.         
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----~g~~~A~~~Lg~~y~---------  294 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----ADQPRAELLLGKLYY---------  294 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH---------
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHH---------
Confidence            78999999999987   8899999999998 4  568899999999999986    458899999999884         


Q ss_pred             ccchhhhHHhcCC-----CHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        594 STHTSYLFIQGIS-----DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       594 ~~~~~~~~l~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                                 .|     ++++|+.+|+++.   +.++.++++||.+|..    ..++++|+.+|+++.+  +.++.+.+
T Consensus       295 -----------~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~  358 (452)
T 3e4b_A          295 -----------EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADF  358 (452)
T ss_dssp             -----------HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHH
T ss_pred             -----------cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHH
Confidence                       44     8999999999988   8889999999988877    3489999999999876  56688899


Q ss_pred             HHHHHHHh
Q psy16607        665 NQAVISNL  672 (677)
Q Consensus       665 ~la~~~~~  672 (677)
                      +||.+|..
T Consensus       359 ~Lg~~y~~  366 (452)
T 3e4b_A          359 AIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHh
Confidence            99988874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=1.4e-23  Score=214.61  Aligned_cols=274  Identities=14%  Similarity=0.117  Sum_probs=208.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------CcCCHHHH
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV----TIMTEMARIFEGLNNMPMSVKYYKLILKR------DATCMEAI  428 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~  428 (677)
                      .+...|..+...|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .+....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            455566666777777777777777777666653    45666777777777777777777776665      33345667


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q psy16607        429 ACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQ--------------------YDMVVTCF  482 (677)
Q Consensus       429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~  482 (677)
                      ..+|.++...|++++|+..+++++...+..      ..++..+|.++...|+                    +++|+..+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            777777777777777777777777654432      3477888888888888                    88888888


Q ss_pred             HHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccC
Q psy16607        483 ERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQ  552 (677)
Q Consensus       483 ~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~  552 (677)
                      ++++...+..    ....++..+|.++.        ..|++++|+..++++++..+..      ..++..+|.++...|+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHY--------LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            8887763221    23668889999998        8999999999999999765433      3489999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC---
Q psy16607        553 YDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH---  625 (677)
Q Consensus       553 ~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~---  625 (677)
                      +++|+.++++++.......    ...++..+|.++.                   ..|++++|+.++++++...+..   
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~a~~~~~~~~~~  299 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-------------------LLQDYEKAIDYHLKHLAIAQELKDR  299 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999998432211    2577889999998                   9999999999999999875533   


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        626 ---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       626 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                         ..++..+|.++...|++++|..+|++++++.+..
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence               4588899999999999999999999999988764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=7.1e-23  Score=216.54  Aligned_cols=270  Identities=15%  Similarity=0.165  Sum_probs=185.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DI----EAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEVTIMTE  396 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~  396 (677)
                      ..+|..+...|++++|+..|+++++..| +.    .++..+|.++...|++++|+..++++++.      .|....++..
T Consensus        52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  131 (411)
T 4a1s_A           52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN  131 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence            3445555555555555555555555544 22    34555555555555555555555555544      2334455556


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHh------CcCCHHHHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q psy16607        397 MARIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQ-----------------PEVALLFYRRLLQ  453 (677)
Q Consensus       397 la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~  453 (677)
                      +|.++...|++++|+.+|++++..      .+....++..+|.++...|+                 +++|+.++++++.
T Consensus       132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  211 (411)
T 4a1s_A          132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK  211 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            666666666666666666666555      33345566666666666666                 6666666666655


Q ss_pred             cC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHH
Q psy16607        454 MG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVAL  523 (677)
Q Consensus       454 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~  523 (677)
                      +.      +....++..+|.++...|++++|+.++++++...+..    ....++..+|.++.        ..|++++|+
T Consensus       212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~  283 (411)
T 4a1s_A          212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI--------FLGQFEDAA  283 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------TTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--------HCcCHHHHH
Confidence            42      2234577788888888888888888888888776653    12337788888887        889999999


Q ss_pred             HHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        524 LFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       524 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      ..|++++...+..      ..++..+|.++...|++++|+.+|++++.....    +....++..+|.++.         
T Consensus       284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---------  354 (411)
T 4a1s_A          284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS---------  354 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH---------
Confidence            9999888766533      678899999999999999999999999985322    233568889999998         


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                                ..|++++|+.+|++++++.+.
T Consensus       355 ----------~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          355 ----------AIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             ----------HTTCHHHHHHHHHHHHHHCCH
T ss_pred             ----------HhccHHHHHHHHHHHHHHHhh
Confidence                      999999999999999998764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=6.4e-23  Score=199.75  Aligned_cols=219  Identities=16%  Similarity=0.138  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      +..++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|++++...|.+  ..++..++.+
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA--ATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--hHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666655  6666666666


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      +.        ..|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++.  ..|++..++..+|.++.
T Consensus       101 ~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A          101 YV--------VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HH--------HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HH--------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence            65        666666666666666666666666667777777777777777777777776  66777777777777777


Q ss_pred             HhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q psy16607        585 ITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  664 (677)
Q Consensus       585 ~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  664 (677)
                                         ..|++++|+..+++++...|.++.++..+|.++...|++++|+.+|+++++++|++..++.
T Consensus       171 -------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  231 (243)
T 2q7f_A          171 -------------------NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH  231 (243)
T ss_dssp             -------------------HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             -------------------HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence                               7777777777777777777777777777777777777777888888887777777777777


Q ss_pred             HHHHHHHhcC
Q psy16607        665 NQAVISNLVS  674 (677)
Q Consensus       665 ~la~~~~~~G  674 (677)
                      .++.+....|
T Consensus       232 ~~~~l~~~~~  241 (243)
T 2q7f_A          232 AKKLLGHHHH  241 (243)
T ss_dssp             HHTC------
T ss_pred             HHHHHHhhcc
Confidence            7766655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=1.3e-21  Score=194.50  Aligned_cols=234  Identities=10%  Similarity=0.091  Sum_probs=184.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHH
Q psy16607        387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELF  462 (677)
Q Consensus       387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  462 (677)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.+..+++.+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            356677777777777777888888888877777  5667777778887777    778888888888877764  67778


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc----CCCHHHHHHHHHHHHHcCC
Q psy16607        463 NNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY----NDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       463 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~----~~~~~~A~~~~~~al~~~p  534 (677)
                      +.+|.+|..    .+++++|+.+|+++++..  +  ..+++.+|.++.        .    .+++++|+.+|+++++.+ 
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~~~--------~~~~~~~~~~~A~~~~~~a~~~~-  144 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y--AEGCASLGGIYH--------DGKVVTRDFKKAVEYFTKACDLN-  144 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHH--------HCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C--ccHHHHHHHHHH--------cCCCcccCHHHHHHHHHHHHhcC-
Confidence            888888888    888888888888887763  3  777888888876        6    788888888888888765 


Q ss_pred             CcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc----CC
Q psy16607        535 YNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG----IS  606 (677)
Q Consensus       535 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g  606 (677)
                       ++.++..+|.++..    .+++++|+.+|+++++  .  +++.+++.+|.+|.                   .    .+
T Consensus       145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~~~-------------------~g~~~~~  200 (273)
T 1ouv_A          145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--L--KDSPGCFNAGNMYH-------------------HGEGATK  200 (273)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T--TCHHHHHHHHHHHH-------------------HTCSSCC
T ss_pred             -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHH-------------------cCCCCCc
Confidence             56778888888887    8888888888888887  3  45678888888887                   7    88


Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607        607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETH  663 (677)
Q Consensus       607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  663 (677)
                      ++++|+.+|+++++..|  +.+++.+|.++..    .+++++|+.+|++++++.|++...+
T Consensus       201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            89999999999888765  7788889999988    8899999999999999888665443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=1e-22  Score=208.06  Aligned_cols=270  Identities=16%  Similarity=0.187  Sum_probs=201.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-D----IEAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEVTIMTE  396 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~  396 (677)
                      +..|..+...|++++|+..|+++++..| +    ..++..+|.++...|++++|+..+++++..      .|....++..
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            4566677777777777777777776665 2    356667777777777777777777776655      2334556777


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCC--------------------hHHHHHHHHH
Q psy16607        397 MARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEVALLFYRR  450 (677)
Q Consensus       397 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~  450 (677)
                      +|.++...|++++|+..++++++..+..      ..++..+|.++...|+                    +++|+.++++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            7777777777777777777777665432      3467777777777777                    7777777777


Q ss_pred             HHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607        451 LLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPE  520 (677)
Q Consensus       451 al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~  520 (677)
                      ++..      .+....++..+|.++...|++++|+.++++++...+..    ....++..+|.++.        ..|+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~  240 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--------FLGEFE  240 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------HHTCHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--------HcCCHH
Confidence            7664      22334578888999999999999999999988776543    12347888888887        889999


Q ss_pred             HHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCC
Q psy16607        521 VALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSP  590 (677)
Q Consensus       521 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p  590 (677)
                      +|+..+++++...+..      ..++..+|.++...|++++|+.++++++......    ....++..+|.++.      
T Consensus       241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~------  314 (338)
T 3ro2_A          241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT------  314 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH------
Confidence            9999999998765544      6788999999999999999999999999853222    22567889999998      


Q ss_pred             CCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        591 FSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       591 ~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                                   ..|++++|+.++++++++.+.
T Consensus       315 -------------~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          315 -------------ALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             -------------HHTCHHHHHHHHHHHHHC---
T ss_pred             -------------HcCChHHHHHHHHHHHHHHHh
Confidence                         999999999999999998765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=1.3e-22  Score=201.55  Aligned_cols=244  Identities=11%  Similarity=0.009  Sum_probs=134.6

Q ss_pred             HcCCHHHHHHHHHHHHccC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16607        336 SLGLIREAQQQFNSALNQF----T-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS  410 (677)
Q Consensus       336 ~~g~~~~A~~~~~~al~~~----p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  410 (677)
                      ..|++++|+..|+++++..    | +..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            3455555555555555542    1 3444555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607        411 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  490 (677)
Q Consensus       411 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  490 (677)
                      +.+|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+.......+.+ ..                   
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-------------------  156 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-------------------  156 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-------------------
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-------------------
Confidence            5555555555555445555555555555555555555555554444444333322222 23                   


Q ss_pred             ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607        491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  570 (677)
Q Consensus       491 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p  570 (677)
                                               .|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++.  ..|
T Consensus       157 -------------------------~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~~~  208 (275)
T 1xnf_A          157 -------------------------KLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT--DNT  208 (275)
T ss_dssp             -------------------------HHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC--SHH
T ss_pred             -------------------------hcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc--ccc
Confidence                                     35555555555555555544433332 44455555666666666666665  333


Q ss_pred             ----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH
Q psy16607        571 ----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  646 (677)
Q Consensus       571 ----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  646 (677)
                          .+..++..+|.++.                   ..|++++|+..|++++..+|++...   .+.++...|++++|+
T Consensus       209 ~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~  266 (275)
T 1xnf_A          209 SLAEHLSETNFYLGKYYL-------------------SLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQ  266 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC-
T ss_pred             cccccccHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhH
Confidence                33677888888887                   8888888888888888888766443   366777888888888


Q ss_pred             HHH
Q psy16607        647 TYL  649 (677)
Q Consensus       647 ~~~  649 (677)
                      ..+
T Consensus       267 ~~~  269 (275)
T 1xnf_A          267 DDL  269 (275)
T ss_dssp             ---
T ss_pred             HHH
Confidence            776

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=1.6e-22  Score=196.87  Aligned_cols=213  Identities=13%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      ...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666666666666655555566666666


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccC
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYN  516 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~  516 (677)
                      ..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+  ..++..+|.++.        ..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~  172 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLA--------NE  172 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHH--------Hc
Confidence            66666666666666655555555555555555555555555555555555555554  555555555554        55


Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  581 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~  581 (677)
                      |++++|+..++++++..|.++.++..+|.++...|++++|+.+|+++++  .+|++..++..++.
T Consensus       173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~  235 (243)
T 2q7f_A          173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAKKL  235 (243)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555  44555444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=1.5e-21  Score=191.27  Aligned_cols=210  Identities=18%  Similarity=0.092  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      +.+++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|++++...|.+  ..++..++.+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555666666666666665555555  5556666666


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  582 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~  582 (677)
                      +.        ..|++++|+..+++++.  ..|.+..++..+|.++...|++++|+.+|++++.  ..|.+..++..+|.+
T Consensus       115 ~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~  184 (252)
T 2ho1_A          115 LY--------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADL  184 (252)
T ss_dssp             HH--------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHH
T ss_pred             HH--------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHH
Confidence            55        56666666666666665  5566667777777777777888888888888877  677777788888888


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                      +.                   ..|++++|+..++++++..|.+..++..++.++...|++++|..+++++++..|+++.+
T Consensus       185 ~~-------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          185 LY-------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HH-------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HH-------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence            77                   88888888888888888888888888888888888888888888888888888888776


Q ss_pred             HHH
Q psy16607        663 HYN  665 (677)
Q Consensus       663 ~~~  665 (677)
                      ...
T Consensus       246 ~~~  248 (252)
T 2ho1_A          246 QEF  248 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=5.9e-23  Score=204.04  Aligned_cols=249  Identities=8%  Similarity=-0.082  Sum_probs=209.6

Q ss_pred             HhcccCHHHHHHHHHHHHhhCc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607        299 YHHENDVASAMDLAVESTKACE---FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI  374 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~  374 (677)
                      ....|++++|+..++++++..+   +.....++.+|.++...|++++|+..|+++++..| +..++..+|.++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            3456999999999999998742   34456668999999999999999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      +|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|.+......++.. ...|++++|+..+++++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998766666544 6669999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc
Q psy16607        455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM  532 (677)
Q Consensus       455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~  532 (677)
                      .|.+...+. ++.++...++.++|+..+++++...|..  ....++..+|.++.        ..|++++|+..|++++..
T Consensus       174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL--------SLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTT
T ss_pred             CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhC
Confidence            888766654 7777888899999999999998887643  12567778888887        788888888888888888


Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy16607        533 GLYNAELFNNLALCCFYSQQYDMVVTCF  560 (677)
Q Consensus       533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~  560 (677)
                      +|.+...   .+.++...|++++|+..|
T Consensus       245 ~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          245 NVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             CchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            7766433   366777777777777766

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=3.2e-21  Score=185.05  Aligned_cols=214  Identities=13%  Similarity=0.054  Sum_probs=134.3

Q ss_pred             cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607        422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  501 (677)
Q Consensus       422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  501 (677)
                      |.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+  ..++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHH
Confidence            33444445555555555555555555555555555555555555555555555555555555555555554  5555555


Q ss_pred             HHHHHHhhhcccccC-CCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHH
Q psy16607        502 SHVAILNALSTSVYN-DQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  578 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~  578 (677)
                      |.++.        .. |++++|+..++++++  ..|.+..++..+|.++...|++++|+.+|++++.  ..|.+..++..
T Consensus        83 ~~~~~--------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~  152 (225)
T 2vq2_A           83 GWFLC--------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKE  152 (225)
T ss_dssp             HHHHH--------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred             HHHHH--------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHH
Confidence            55555        55 555555555555555  4455566666677777777777777777777776  56666777777


Q ss_pred             HHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS-SHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       579 l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      +|.++.                   ..|++++|+..+++++...| .+..++..++.++...|+.++|..+++.+.+.+|
T Consensus       153 la~~~~-------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p  213 (225)
T 2vq2_A          153 LARTKM-------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP  213 (225)
T ss_dssp             HHHHHH-------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            777776                   77777777777777777777 7777777777777777777777777777777777


Q ss_pred             CChHHHHHH
Q psy16607        658 YLYETHYNQ  666 (677)
Q Consensus       658 ~~~~~~~~l  666 (677)
                      +++.+...+
T Consensus       214 ~~~~~~~~l  222 (225)
T 2vq2_A          214 YSEELQTVL  222 (225)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            777665443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=7.8e-22  Score=183.48  Aligned_cols=178  Identities=15%  Similarity=0.234  Sum_probs=157.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      +++.+|+++|.+|...|++++|+..|+++++++|++  ..++..+|.++.        ..|++++|+..+.+++...|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~--------~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN--VETLLKLGKTYM--------DIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCCCC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCchh
Confidence            467788888888888888888888888888888887  888888888887        8888889998888888888988


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      +.++..+|.++...++++.|+..+.+++.  ..|.+..++..+|.++.                   ..|++++|+..|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~  131 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYD-------------------SMGEHDKAIEAYE  131 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHH-------------------HhCCchhHHHHHH
Confidence            99999999999999999999999999998  88999999999999998                   9999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        617 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       617 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      ++++++|.++.++.++|.++..+|++++|+..|+++++++|+++  .+++|
T Consensus       132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a--~~~la  180 (184)
T 3vtx_A          132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA--KYELA  180 (184)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH--HHCSC
T ss_pred             HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH--HHHHH
Confidence            99999999999999999999999999999999999999998763  34444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=1.6e-21  Score=197.50  Aligned_cols=255  Identities=13%  Similarity=0.033  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-hCcCCHHHHHHHHHHHHhC
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEG-------LNNM-------PMSVKYYKLILK-RDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  438 (677)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            678888999999899999999888888763       5776       899999999999 6899999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCC
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND  517 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~  517 (677)
                      |++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|..  ..+|...+....       ...|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~-------~~~~  183 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEY-------YCSK  183 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHH-------HTSC
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH-------HHcC
Confidence            9999999999999999998886 89999999999999999999999999988876  677766655532       0368


Q ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-hcc-chHHHHHHHHHHHHHhhcCCCCccc
Q psy16607        518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-LNE-NAADVWYNISHVAIITECSPFSFST  595 (677)
Q Consensus       518 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~p-~~~~~~~~l~~~~~~~~~~p~~~~~  595 (677)
                      ++++|+..|+++++.+|+++.+|..++..+...|++++|+.+|++++... ..| ....+|..++..+.           
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-----------  252 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-----------  252 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-----------
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-----------
Confidence            99999999999999999999999999999999999999999999999831 245 36788888888887           


Q ss_pred             chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607        596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  668 (677)
Q Consensus       596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  668 (677)
                              ..|++++|...++++++..|++..... ++.+           ....+.+.++|.+++++..||.
T Consensus       253 --------~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~lgY  305 (308)
T 2ond_A          253 --------NIGDLASILKVEKRRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKALGY  305 (308)
T ss_dssp             --------HHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred             --------HcCCHHHHHHHHHHHHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence                    889999999999999999987653321 1111           1112667788999888876653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=1.1e-20  Score=187.83  Aligned_cols=228  Identities=12%  Similarity=0.143  Sum_probs=151.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACI  431 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  431 (677)
                      ++.+++.+|.++...|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++.+  ++.+++.+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l   80 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   80 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            455666666666666666666666666666  5556666666666666    666666666666666654  56666666


Q ss_pred             HHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q psy16607        432 GVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISH  503 (677)
Q Consensus       432 a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  503 (677)
                      |.++..    .+++++|+.+|+++++.+  ++.++..+|.+|..    .+++++|+.+|+++++..  +  ..+++.+|.
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--GDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c--HHHHHHHHH
Confidence            666666    666777777776666653  56666677777766    677777777777766654  2  556666666


Q ss_pred             HHHHhhhccccc----CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607        504 VAILNALSTSVY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADV  575 (677)
Q Consensus       504 ~~~l~~l~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~  575 (677)
                      ++.        .    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++++  ..+  ..+
T Consensus       155 ~~~--------~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~--~~a  220 (273)
T 1ouv_A          155 LYD--------AGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LEN--GGG  220 (273)
T ss_dssp             HHH--------HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTC--HHH
T ss_pred             HHH--------cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCC--HHH
Confidence            665        4    66777777777777665  345666777777777    7777777777777766  332  566


Q ss_pred             HHHHHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccCCCCh
Q psy16607        576 WYNISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSHG  626 (677)
Q Consensus       576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~  626 (677)
                      ++.+|.+|.                   .    .+++++|+.+|+++++..|.++
T Consensus       221 ~~~l~~~~~-------------------~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          221 CFNLGAMQY-------------------NGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHHHHHH-------------------TTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHH-------------------cCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            677777766                   6    6777777777777777666543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.89  E-value=3.3e-21  Score=188.93  Aligned_cols=209  Identities=15%  Similarity=0.096  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  470 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  470 (677)
                      +.++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607        471 YSQQYDMVVTCFERALS--LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  548 (677)
Q Consensus       471 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  548 (677)
                      ..|++++|+.+|++++.  ..|.+  ..++..+|.++.        ..|++++|+..++++++..|.+..++..+|.++.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSL--------QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY  186 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            66666666666666666  44444  566666666665        6666666666666666666666666666666666


Q ss_pred             hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH
Q psy16607        549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS  628 (677)
Q Consensus       549 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~  628 (677)
                      ..|++++|+.++++++.  ..|.+...+..++.++.                   ..|++++|..+++++++..|+++.+
T Consensus       187 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          187 KEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAK-------------------VFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHHHCCCCHHH
Confidence            77777777777777666  56666666666666666                   6777777777777777776666655


Q ss_pred             HH
Q psy16607        629 QN  630 (677)
Q Consensus       629 ~~  630 (677)
                      ..
T Consensus       246 ~~  247 (252)
T 2ho1_A          246 QE  247 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=7.2e-21  Score=182.55  Aligned_cols=215  Identities=17%  Similarity=0.018  Sum_probs=152.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607        387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA  466 (677)
Q Consensus       387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  466 (677)
                      .|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45566666677777777777777777777777777766677777777777777777777777777777777777777777


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607        467 LCCFYS-QQYDMVVTCFERALS--LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL  543 (677)
Q Consensus       467 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  543 (677)
                      .++... |++++|+..+++++.  ..|..  ..++..+|.++.        ..|++++|+..++++++..|.++.++..+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  153 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSA--------KQGQFGLAEAYLKRSLAAQPQFPPAFKEL  153 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcch--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            777777 777777777777776  33443  666777777776        77777777777777777777777777777


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        544 ALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       544 a~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                      |.++...|++++|+.++++++.  ..| .+...+..++.++.                   ..|++++|..+++.+....
T Consensus       154 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          154 ARTKMLAGQLGDADYYFKKYQS--RVEVLQADDLLLGWKIAK-------------------ALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHH-------------------hcCcHHHHHHHHHHHHHhC
Confidence            7777777777777777777777  566 67777777777666                   7777777777777777777


Q ss_pred             CCChHHHHHH
Q psy16607        623 SSHGLSQNNL  632 (677)
Q Consensus       623 p~~~~~~~~l  632 (677)
                      |+++.+...+
T Consensus       213 p~~~~~~~~l  222 (225)
T 2vq2_A          213 PYSEELQTVL  222 (225)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHh
Confidence            7776665433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=8.7e-22  Score=211.72  Aligned_cols=214  Identities=13%  Similarity=0.074  Sum_probs=183.8

Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP-EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      +++++..+.+.....|.+..+++.+|.++...|++ ++|+..|+++++.+|.++.+|..+|.+|...|++++|+.+|+++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45555666666666666777777777777777777 77777777777777777777777777777777777777788888


Q ss_pred             HhhhcccchHHHHHHHHHHHHHhhhcccccC---------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------
Q psy16607        486 LSLALNENAADVWYNISHVAILNALSTSVYN---------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS------  550 (677)
Q Consensus       486 l~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------  550 (677)
                      ++++|+   ..++..+|.++.        ..         |++++|+..|+++++.+|+++.+|+.+|.++...      
T Consensus       164 l~~~p~---~~~~~~lg~~~~--------~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          164 LTHCKN---KVSLQNLSMVLR--------QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HTTCCC---HHHHHHHHHHHT--------TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhCCC---HHHHHHHHHHHH--------HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            777776   577788888876        77         9999999999999999999999999999999999      


Q ss_pred             --cCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC
Q psy16607        551 --QQYDMVVTCFERALSLALNE---NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH  625 (677)
Q Consensus       551 --g~~~~A~~~~~~al~~~~~p---~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~  625 (677)
                        |++++|+.+|++++.  .+|   +++.+|+++|.++.                   ..|++++|+..|+++++++|++
T Consensus       233 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          233 NPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHK-------------------YEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             CHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCC
Confidence              999999999999999  789   99999999999999                   9999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        626 GLSQNNLAVLEAREGHIERASTYLQAA  652 (677)
Q Consensus       626 ~~~~~~la~~~~~~g~~~~A~~~~~~a  652 (677)
                      +.++..++.++...|++++|+..+.+.
T Consensus       292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          292 PEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999876543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=3.4e-21  Score=179.09  Aligned_cols=172  Identities=19%  Similarity=0.247  Sum_probs=125.7

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      ++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q psy16607        470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  549 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  549 (677)
                      ...++++.|+..+.+++...|.+  ..++..+|.++.        ..|++++|+..|+++++.+|.++.+++.+|.++..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYD--------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHH--------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            77777777777777777777776  677777777776        77777777777777777777777777777777777


Q ss_pred             ccCHHHHHHHHHHHHHHhhccchH
Q psy16607        550 SQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       550 ~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                      .|++++|+.+|+++++  .+|+++
T Consensus       154 ~g~~~~A~~~~~~al~--~~p~~a  175 (184)
T 3vtx_A          154 KGLRDEAVKYFKKALE--KEEKKA  175 (184)
T ss_dssp             TTCHHHHHHHHHHHHH--TTHHHH
T ss_pred             CCCHHHHHHHHHHHHh--CCccCH
Confidence            7777777777777777  666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=3.7e-21  Score=201.49  Aligned_cols=237  Identities=12%  Similarity=0.071  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhC------cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-------CHH
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NAE  460 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~  460 (677)
                      ++.+|..+...|++++|+.+|++++.+.      +....++..+|.++...|++++|+.++++++++.+.       ...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            3447777777777777777777777661      223567777777787888888888888777776432       235


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH-----
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ-----  531 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~-----  531 (677)
                      ++..+|.+|...|++++|+.+|++++.+.+..    ....++.++|.++.        ..|++++|+.+|+++++     
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--------~~g~~~~A~~~~~~al~~~~~~  257 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--------SQSQYEDAIPYFKRAIAVFEES  257 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHhh
Confidence            78888899999999999999999988876543    22458889999998        89999999999999998     


Q ss_pred             cC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC
Q psy16607        532 MG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD  607 (677)
Q Consensus       532 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~  607 (677)
                      .+ |..+.++..+|.++...|++++|+.++++++.+..   ++.....+..++.++.                   ..|+
T Consensus       258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~  318 (383)
T 3ulq_A          258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-------------------SGPD  318 (383)
T ss_dssp             TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------------SSCC
T ss_pred             ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------------CCCc
Confidence            56 88889999999999999999999999999998543   2333344667888887                   9999


Q ss_pred             ---HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607        608 ---TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       608 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  658 (677)
                         +++|+..+++. ...|....++..+|.+|...|++++|..+|++++++...
T Consensus       319 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          319 EEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence               88888888887 334455678899999999999999999999999987643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=1.6e-21  Score=209.57  Aligned_cols=215  Identities=9%  Similarity=0.037  Sum_probs=206.1

Q ss_pred             CCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16607        338 GLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQP-IRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYK  415 (677)
Q Consensus       338 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  415 (677)
                      +.+++++..+++.....| +..+++.+|.++...|++ ++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            457888889998888887 899999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHhCcCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCHHHH
Q psy16607        416 LILKRDATCMEAIACIGVNHFYN---------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS--------QQYDMV  478 (677)
Q Consensus       416 ~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A  478 (677)
                      ++++++|+ ..++..+|.++...         |++++|+..|+++++.+|+++.+|..+|.+|...        |++++|
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            99999998 79999999999999         9999999999999999999999999999999999        999999


Q ss_pred             HHHHHHHHhhhc---ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH
Q psy16607        479 VTCFERALSLAL---NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  555 (677)
Q Consensus       479 ~~~~~~al~~~p---~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  555 (677)
                      +.+|+++++++|   .+  ..+|+++|.++.        ..|++++|+..|+++++.+|++..++..++.++...|++++
T Consensus       241 ~~~~~~al~~~p~~~~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          241 LSAYAQAEKVDRKASSN--PDLHLNRATLHK--------YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             HHHHHHHHHHCGGGGGC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   77  999999999998        99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy16607        556 VVTCFERA  563 (677)
Q Consensus       556 A~~~~~~a  563 (677)
                      |+..+.+.
T Consensus       311 Ai~~~~~~  318 (474)
T 4abn_A          311 LLESKGKT  318 (474)
T ss_dssp             HHHHTTTC
T ss_pred             HHHHhccc
Confidence            99877654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=1.8e-20  Score=189.90  Aligned_cols=223  Identities=12%  Similarity=0.074  Sum_probs=206.1

Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHc
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFY-------NDQP-------EVALLFYRRLLQ-MGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~  472 (677)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999998874       5886       999999999999 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhhcccchHH-HHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-c
Q psy16607        473 QQYDMVVTCFERALSLALNENAAD-VWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-S  550 (677)
Q Consensus       473 g~~~~A~~~~~~al~~~p~~~~~~-~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~  550 (677)
                      |++++|...|+++++..|.+  .. +|..++.++.        ..|++++|+..|+++++..|.+..+|...+.+... .
T Consensus       113 ~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~--------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFAR--------RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSC--THHHHHHHHHHHH--------HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHhccccC--ccHHHHHHHHHHH--------HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999999987  65 8999999988        89999999999999999999998888877776543 7


Q ss_pred             cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc---CCC-Ch
Q psy16607        551 QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI---DSS-HG  626 (677)
Q Consensus       551 g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~---~p~-~~  626 (677)
                      |++++|+.+|+++++  ..|+++.+|..++.++.                   ..|++++|+..|++++..   .|+ ..
T Consensus       183 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~-------------------~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          183 KDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLS-------------------HLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             CCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH-------------------TTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            999999999999999  78999999999999998                   999999999999999995   553 67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      .+|..++..+...|++++|..+++++++..|++.+
T Consensus       242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence            89999999999999999999999999999998654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.88  E-value=1.1e-20  Score=201.76  Aligned_cols=314  Identities=11%  Similarity=0.015  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHH---H
Q psy16607        306 ASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG-----LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRA---I  377 (677)
Q Consensus       306 ~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A---~  377 (677)
                      ++|+.+|+++++.    ....++.+|.++...|     ++++|+.+|+++++..+ ..+++.+|.+|...+...++   .
T Consensus        55 ~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~  129 (452)
T 3e4b_A           55 KQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQ  129 (452)
T ss_dssp             --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred             HHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHH
Confidence            7888888888855    2233367788666655     77888888888877543 33778888888877654443   4


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHH----HHHHHHhCcCCHHHHHHHHHHHHhCC---ChHHHHHHHHH
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKY----YKLILKRDATCMEAIACIGVNHFYND---QPEVALLFYRR  450 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~  450 (677)
                      ..+.++..  +.++.+++.+|.+|...+.++++...    ++.+...+|   .+++.+|.+|...|   ++++|+.+|++
T Consensus       130 ~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~  204 (452)
T 3e4b_A          130 QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEA  204 (452)
T ss_dssp             HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence            44444333  23467788888888888765555444    444433333   47888888888888   88888888888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q psy16607        451 LLQMGLYNAELFNNLALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFY  526 (677)
Q Consensus       451 al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~  526 (677)
                      +.+..+.....++++|.+|...    +++++|+.+|+++.   |.+  +.+++++|.++.- .    ...+++++|+.+|
T Consensus       205 aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~-~----~~~~d~~~A~~~~  274 (452)
T 3e4b_A          205 GVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY--PASWVSLAQLLYD-F----PELGDVEQMMKYL  274 (452)
T ss_dssp             HHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS--THHHHHHHHHHHH-S----GGGCCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHh-C----CCCCCHHHHHHHH
Confidence            8888888888888888888665    68888888888887   665  7888888887320 0    1567888888888


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhH
Q psy16607        527 RRLLQMGLYNAELFNNLALCCFYSQ-----QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLF  601 (677)
Q Consensus       527 ~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~  601 (677)
                      +++.+.+  ++.+++++|.+|. .|     ++++|+.+|+++.     +.++.+++++|.+|.                 
T Consensus       275 ~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~-----------------  329 (452)
T 3e4b_A          275 DNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYR-----------------  329 (452)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHH-----------------
Confidence            8887553  7788888888887 44     8888888888875     677788888888875                 


Q ss_pred             Hhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        602 IQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       602 l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                        .    ..++++|+.+|+++.+  +.++.+.++||.+|..    ..++.+|..+|+++.+..+  ..+...++.+.
T Consensus       330 --~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~  400 (452)
T 3e4b_A          330 --RGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLE  400 (452)
T ss_dssp             --TTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred             --CCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence              3    3388888888888876  3567788888888774    4578888888888877553  44555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=3.4e-20  Score=178.90  Aligned_cols=219  Identities=11%  Similarity=0.059  Sum_probs=151.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  468 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  468 (677)
                      ++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            445555566666666666666666666665555 5555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607        469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  548 (677)
Q Consensus       469 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  548 (677)
                      +...|++++|+..|+++++..|++  ...+..++                                   .++..+|.++.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~-----------------------------------~~~~~~g~~~~  128 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGN--ATIEKLYA-----------------------------------IYYLKEGQKFQ  128 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHH-----------------------------------HHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHH-----------------------------------HHHHHHhHHHH
Confidence            555555555555555555555554  33333332                                   45678999999


Q ss_pred             hccCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607        549 YSQQYDMVVTCFERALSLALNEN--AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG  626 (677)
Q Consensus       549 ~~g~~~~A~~~~~~al~~~~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~  626 (677)
                      ..|++++|+..|+++++  .+|+  +..++..+|.++.                   .     .+...++++..+.+.+.
T Consensus       129 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~-------------------~-----~~~~~~~~a~~~~~~~~  182 (228)
T 4i17_A          129 QAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFY-------------------N-----NGADVLRKATPLASSNK  182 (228)
T ss_dssp             HTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHH-------------------H-----HHHHHHHHHGGGTTTCH
T ss_pred             HhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHH-------------------H-----HHHHHHHHHHhcccCCH
Confidence            99999999999999999  8999  8999999999987                   4     44556778888877665


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      ..+  .+......+.+++|+.+|+++++++|++..+...++.+...+
T Consensus       183 ~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          183 EKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            443  444566778899999999999999999999999988876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.87  E-value=9.8e-21  Score=198.24  Aligned_cols=294  Identities=11%  Similarity=0.083  Sum_probs=232.7

Q ss_pred             HHhcccCHHHHHHHHHHHHhhCcC--CCHHH--HHH--HHHHHHHcCCHHHHH-----------HHHHHHHccCCC----
Q psy16607        298 LYHHENDVASAMDLAVESTKACEF--RDWWW--KVQ--LGKCYFSLGLIREAQ-----------QQFNSALNQFTD----  356 (677)
Q Consensus       298 ~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~--~~~--la~~~~~~g~~~~A~-----------~~~~~al~~~p~----  356 (677)
                      .++..+++++|..+++++.+..+.  .+...  ++.  ..+.....+.++.+.           ..++++-.....    
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~  100 (383)
T 3ulq_A           21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL  100 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence            356689999999999998765432  23222  122  222333344455555           555554332222    


Q ss_pred             --HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-----
Q psy16607        357 --IEAFIRMIRVYIRLDQPIRAIDIGRNALDC---YPN---EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-----  423 (677)
Q Consensus       357 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  423 (677)
                        ...++.+|.++...|++++|+..++++++.   .++   ...++..+|.++...|++++|+.++++++++.+.     
T Consensus       101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  180 (383)
T 3ulq_A          101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN  180 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence              234455999999999999999999999987   233   4578999999999999999999999999998543     


Q ss_pred             --CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----h-
Q psy16607        424 --CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSL-----A-  489 (677)
Q Consensus       424 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~-  489 (677)
                        ...++..+|.++...|++++|+.+|++++.+.+..      ..++.++|.+|...|++++|+.+|++++.+     + 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence              35688999999999999999999999999875433      258999999999999999999999999984     3 


Q ss_pred             cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHhccC---HHHHHHHHH
Q psy16607        490 LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQ---YDMVVTCFE  561 (677)
Q Consensus       490 p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~---~~~A~~~~~  561 (677)
                      |..  ..++..+|.++.        ..|++++|+.++++++..     +|.....+..+|.++...|+   +++|+..++
T Consensus       261 ~~~--~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~  330 (383)
T 3ulq_A          261 PSL--PQAYFLITQIHY--------KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE  330 (383)
T ss_dssp             GGH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             hhH--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            444  889999999998        999999999999999976     34444456789999999999   788888887


Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607        562 RALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS  623 (677)
Q Consensus       562 ~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p  623 (677)
                      +.-   ..+....++..+|.+|.                   ..|++++|+.+|++++++..
T Consensus       331 ~~~---~~~~~~~~~~~la~~y~-------------------~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          331 SKM---LYADLEDFAIDVAKYYH-------------------ERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HTT---CHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHT
T ss_pred             HCc---CHHHHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHHH
Confidence            762   45667788999999999                   99999999999999998643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.86  E-value=6.5e-20  Score=176.87  Aligned_cols=217  Identities=10%  Similarity=0.028  Sum_probs=188.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      ++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            678999999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccc
Q psy16607        435 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSV  514 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~  514 (677)
                      +...|++++|+..++++++..|.++..+..+                             ..++..+|.++.        
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----------------------------~~~~~~~g~~~~--------  128 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLY-----------------------------AIYYLKEGQKFQ--------  128 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH-----------------------------HHHHHHHHHHHH--------
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHH-----------------------------HHHHHHHhHHHH--------
Confidence            9999999999999999999999998765544                             345667788877        


Q ss_pred             cCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCC
Q psy16607        515 YNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                      ..|++++|+..|+++++.+|+  ++.++..+|.++...|+     ..++++..  ..+.....+.  +....        
T Consensus       129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~--~~~~~~~~~~--~~~~~--------  191 (228)
T 4i17_A          129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATP--LASSNKEKYA--SEKAK--------  191 (228)
T ss_dssp             HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGG--GTTTCHHHHH--HHHHH--------
T ss_pred             HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHh--cccCCHHHHH--HHHHH--------
Confidence            899999999999999999999  99999999999987654     44556655  3343333332  22233        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  637 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  637 (677)
                                 ..+.+++|+.+|+++++++|+++.+...++.+..
T Consensus       192 -----------~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          192 -----------ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             -----------HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                       6678999999999999999999999888887754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=4.8e-21  Score=193.73  Aligned_cols=251  Identities=17%  Similarity=0.163  Sum_probs=182.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----
Q psy16607        387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----  454 (677)
Q Consensus       387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  454 (677)
                      +|....++..+|.++...|++++|+.+|++++++        .|....++..+|.++...|++++|+.++++++..    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3555667777777777777777777777777774        4555677777778888888888888888777765    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----ccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHH
Q psy16607        455 ----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNE-NAADVWYNISHVAILNALSTSVYNDQPEVALL  524 (677)
Q Consensus       455 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~  524 (677)
                          .+....++..+|.++...|++++|+.+|++++...     +++ ....++..+|.++.        ..|++++|+.
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~~A~~  174 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--------NQGKYEEVEY  174 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--------TTTCHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--------HcCCHHHHHH
Confidence                24456678888888888888888888888888774     111 23788999999998        9999999999


Q ss_pred             HHHHHHHc--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHhhcC
Q psy16607        525 FYRRLLQM--------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-------NENAADVWYNISHVAIITECS  589 (677)
Q Consensus       525 ~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~p~~~~~~~~l~~~~~~~~~~  589 (677)
                      ++++++..        .|....++..+|.++...|++++|+.+|++++....       .+.....+...+....     
T Consensus       175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  249 (311)
T 3nf1_A          175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE-----  249 (311)
T ss_dssp             HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-----
Confidence            99999987        777788999999999999999999999999998421       1222223333333322     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  658 (677)
                              ....+...+.+.+|+..++++....|....++..+|.++...|++++|+.+|++++++.|+
T Consensus       250 --------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          250 --------CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --------C-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             --------hcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                    0012226677778888999999888999999999999999999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.85  E-value=9.5e-21  Score=211.36  Aligned_cols=172  Identities=18%  Similarity=0.163  Sum_probs=112.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      .|+++++++++|.++..+|++++|+.+|+++++++|++  ..+++++|.++.        ..|++++|+..|+++++++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--~~a~~nLg~~l~--------~~g~~~eA~~~~~~Al~l~P   74 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQ--------QQGKLQEALMHYKEAIRISP   74 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCC
Confidence            35555666666666666666666666666666666665  666666666665        66666666666666666666


Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607        535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC  614 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~  614 (677)
                      +++.+++++|.++..+|++++|+++|+++++  .+|++..+|+++|.+|.                   .+|++++|+..
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~-------------------~~g~~~eAi~~  133 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHK-------------------DSGNIPEAIAS  133 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHH
Confidence            6666666666666666666666666666666  56666666666666666                   66666666666


Q ss_pred             HHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       615 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      |+++++++|+++.++.++|.++...|++++|.+.|++++++.|
T Consensus       134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence            6666666666666666666666666666666666666666544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.85  E-value=2.9e-20  Score=207.50  Aligned_cols=169  Identities=17%  Similarity=0.219  Sum_probs=119.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607        387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA  466 (677)
Q Consensus       387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  466 (677)
                      .|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|+++.+++++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46666677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        467 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  546 (677)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  546 (677)
                      .++..+|++++|+++|+++++++|++  ..+++++|.++.        ..|++++|+..|+++++++|+++.++.++|.+
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~--------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~  154 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHK--------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence            77777777777777777777777766  667777777766        66777777777777777777777777777777


Q ss_pred             HHhccCHHHHHHHHHHHHH
Q psy16607        547 CFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       547 ~~~~g~~~~A~~~~~~al~  565 (677)
                      +...|++++|++.++++++
T Consensus       155 l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          155 LQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHTTCCTTHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHH
Confidence            7777777777777777766

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=1.6e-18  Score=196.18  Aligned_cols=308  Identities=10%  Similarity=0.070  Sum_probs=204.9

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHH
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIR  375 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~  375 (677)
                      +.++...|.+++|..+|+++....        ..+...+...|++++|.++++++    ..+.+|+.+|.++...|++++
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~--------~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNT--------SAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHH--------HHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHH
Confidence            555566677777777776652100        11222333566666666666654    246677777777777777777


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q psy16607        376 AIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  455 (677)
Q Consensus       376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  455 (677)
                      |+..|.++     +++..+..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|.     .
T Consensus      1124 AIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~ 1191 (1630)
T 1xi4_A         1124 AIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----N 1191 (1630)
T ss_pred             HHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----h
Confidence            77777664     56667777777777777777777777777766543 2222346667777766663 33331     1


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607        456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY  535 (677)
Q Consensus       456 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~  535 (677)
                      ..+...+..+|..+...|+|++|+.+|.++          ..|..++.++.        +.|++++|++.++++     .
T Consensus      1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLv--------kLge~q~AIEaarKA-----~ 1248 (1630)
T 1xi4_A         1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLV--------HLGEYQAAVDGARKA-----N 1248 (1630)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHH--------HhCCHHHHHHHHHHh-----C
Confidence            223345556777777777777777777764          24666777776        677777777777776     4


Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL  615 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~  615 (677)
                      +..+|...+.++...|+|..|..+... +.  .   +++.+..++..|.                   ..|.+++|+.++
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~-Ii--v---~~deLeeli~yYe-------------------~~G~feEAI~Ll 1303 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLH-IV--V---HADELEELINYYQ-------------------DRGYFEELITML 1303 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHh-hh--c---CHHHHHHHHHHHH-------------------HcCCHHHHHHHH
Confidence            456777777777777777777766653 22  2   2333446666666                   889999999999


Q ss_pred             HHHHccCCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCC
Q psy16607        616 HLALSIDSSHGLSQNNLAVLEARE--GHIERASTYLQAAAASSP-----YLYETHYNQAVISNLVSV  675 (677)
Q Consensus       616 ~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~G~  675 (677)
                      ++++.+++.+...+..+|.++.+-  ++..++++.|...+.+.|     ++...|..+..+|.+.|+
T Consensus      1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A         1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred             HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence            999998888888888888877664  678888888888888777     777888888888877765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.84  E-value=1.1e-18  Score=173.35  Aligned_cols=230  Identities=10%  Similarity=0.027  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHc---CCHHHH
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFYND--QPEVALLFYRRLLQMGLYNAELFNNLALCC----FYS---QQYDMV  478 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~~~A  478 (677)
                      ++|+..+.+++.++|++..+|...+.++...+  ++++++.+++.++..+|.+..+|+..+.++    ...   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            46666666666666666666666666666666  666666666666666666666666666666    444   566677


Q ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH--HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC----
Q psy16607        479 VTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE--VALLFYRRLLQMGLYNAELFNNLALCCFYSQQ----  552 (677)
Q Consensus       479 ~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----  552 (677)
                      +.++.++++.+|.+  ..+|...+.+..        ..+.++  ++++++.++++.+|.+..+|..++.++...++    
T Consensus       130 L~~~~~~l~~~pkn--y~aW~~R~~vl~--------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          130 FDILEAMLSSDPKN--HHVWSYRKWLVD--------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             HHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred             HHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence            77777777777776  677777776666        566666  77777777777777777777777777777666    


Q ss_pred             --HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH-HHHHHHHHHccC---CCCh
Q psy16607        553 --YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL-AIQCLHLALSID---SSHG  626 (677)
Q Consensus       553 --~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~-A~~~~~~al~~~---p~~~  626 (677)
                        ++++++++++++.  .+|++..+|+.++.++.                   ..|+..+ ...++.+++.++   |.++
T Consensus       200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~  258 (306)
T 3dra_A          200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHE-------------------RFDRSITQLEEFSLQFVDLEKDQVTSS  258 (306)
T ss_dssp             HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHH-------------------HTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred             hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHH-------------------hcCCChHHHHHHHHHHHhccCCCCCCH
Confidence              7788888888887  77888888888877776                   6666444 445666666665   6777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHH
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAA-SSPYLYETHYNQAV  668 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~  668 (677)
                      .++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+.
T Consensus       259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence            8888888888888888888888888886 68888877776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.84  E-value=5e-19  Score=184.83  Aligned_cols=236  Identities=12%  Similarity=0.065  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCc------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-------CH
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDA------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NA  459 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~  459 (677)
                      .++.+|..+...|++++|+.+|++++.+.+      ....++..+|.++...|++++|+.++++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            345566666677777777777777666532      23456677777777777777777777777765332       23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH----
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ----  531 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~----  531 (677)
                      .++..+|.+|...|++++|+.+|++++.+.+..    ....++.++|.++.        ..|++++|+.++++++.    
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--------~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD--------RSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHh
Confidence            567788888888888888888888888764421    23567888999988        88999999999999998    


Q ss_pred             -cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC
Q psy16607        532 -MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD  607 (677)
Q Consensus       532 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~  607 (677)
                       .+|....++..+|.++...|++++|+.++++++....   ++.....+..++.++.                   ..++
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~-------------------~~~~  315 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK-------------------ETVD  315 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS-------------------SSCC
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------------CCCc
Confidence             7888889999999999999999999999999999542   3444555677777776                   8888


Q ss_pred             ---HHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        608 ---TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       608 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                         +.+|+..+++. ...+....++..+|.+|...|++++|..+|+++++..
T Consensus       316 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          316 ERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence               88899888873 3334456788899999999999999999999998864

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=3.8e-20  Score=187.13  Aligned_cols=238  Identities=16%  Similarity=0.129  Sum_probs=165.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-------
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--------YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR-------  420 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------  420 (677)
                      ...++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+|++++..       
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3455556666666666666666666666553        4445556666777777777777777777776665       


Q ss_pred             -CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q psy16607        421 -DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAELFNNLALCCFYSQQYDMVVTCFERALSL---  488 (677)
Q Consensus       421 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  488 (677)
                       .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+|++++..   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             24456677777777777777777777777777653        445567888888888889999999999888887   


Q ss_pred             -----hcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC---------c------HHHHHHHHHHHH
Q psy16607        489 -----ALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY---------N------AELFNNLALCCF  548 (677)
Q Consensus       489 -----~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~  548 (677)
                           .|..  ..++..+|.++.        ..|++++|+..++++++..+.         .      ...+..++..+.
T Consensus       186 ~~~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 3nf1_A          186 KLGPDDPNV--AKTKNNLASCYL--------KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK  255 (311)
T ss_dssp             TSCTTCHHH--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred             HhCCCCHHH--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence                 4443  778999999998        999999999999999975432         2      233444555566


Q ss_pred             hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       549 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                      ..+.+.+|+..++++..  ..|....++..+|.++.                   ..|++++|+.+|++++++.|.
T Consensus       256 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          256 DGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYR-------------------RQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --CCSCCCC-----------CHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHhhc
Confidence            67777888889999988  78899999999999999                   999999999999999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=8.4e-18  Score=190.30  Aligned_cols=309  Identities=14%  Similarity=0.146  Sum_probs=257.1

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      ..+++++|+++++++      +....++.+|.++...|++++|+..|.++    .+...+..++.++.+.|++++|+++|
T Consensus      1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            457777777777755      23334479999999999999999999886    67889999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  460 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  460 (677)
                      ..+.+..+ ++.+...+|.+|.+.+++++ ++.|.     ...+...+..+|..+...|++++|..+|.++        .
T Consensus      1158 ~mArk~~~-e~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ 1222 (1630)
T 1xi4_A         1158 QMARKKAR-ESYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S 1222 (1630)
T ss_pred             HHHHhhcc-cccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------h
Confidence            99998875 33344469999999999885 44442     2335567778999999999999999999996        5


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF  540 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  540 (677)
                      .|..++.++.++|++++|+++++++     .+  ..+|...+.++.        ..|++..|..+... +..   +++.+
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n--~~aWkev~~acv--------e~~Ef~LA~~cgl~-Iiv---~~deL 1283 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKA-----NS--TRTWKEVCFACV--------DGKEFRLAQMCGLH-IVV---HADEL 1283 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHh-----CC--HHHHHHHHHHHh--------hhhHHHHHHHHHHh-hhc---CHHHH
Confidence            8999999999999999999999999     23  788999999998        89999999998875 433   45566


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      ..++..|...|.|++|+.++++++.  .++.+...+..++.+|.                 .++-++..++++.|...+.
T Consensus      1284 eeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLya-----------------Ky~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A         1284 EELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYS-----------------KFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHH-----------------hCCHHHHHHHHHHHHHhcc
Confidence            6899999999999999999999999  88999999999998885                 3367788899999999988


Q ss_pred             cCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHh
Q psy16607        621 IDS-----SHGLSQNNLAVLEAREGHIERASTYLQAAAAS------------SPYLYETHYNQAVISNL  672 (677)
Q Consensus       621 ~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~  672 (677)
                      +.|     .+...|..+..+|.+.|+++.|+...-+....            .+.+++.+|.....|..
T Consensus      1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A         1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence            877     67889999999999999999999554444333            67888988887776653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.83  E-value=3.3e-18  Score=170.07  Aligned_cols=235  Identities=9%  Similarity=0.001  Sum_probs=208.9

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHhCcCCHHHHHHHHHHH----HhC---CChH
Q psy16607        372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN--NMPMSVKYYKLILKRDATCMEAIACIGVNH----FYN---DQPE  442 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~  442 (677)
                      ..++|+..+.+++.++|++..+|...+.++..+|  ++++++.++.+++..+|++..+|...+.++    ...   ++++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            3468999999999999999999999999999998  999999999999999999999999998888    666   7899


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC--
Q psy16607        443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD--MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ--  518 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~--  518 (677)
                      +++.+++++++.+|.+..+|...+.++...|.++  +++++++++++.+|.+  ..+|...+.+..        ..+.  
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~--------~l~~~~  197 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFLLF--------SKKHLA  197 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------SSGGGC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------hccccc
Confidence            9999999999999999999999999999999988  9999999999999998  999999999987        6666  


Q ss_pred             ----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHh-hccchHHHHHHHHHHHHHhhcCCCC
Q psy16607        519 ----PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM-VVTCFERALSLA-LNENAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       519 ----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-~~p~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                          ++++++++++++..+|.+..+|+.++.++...|+..+ ...++++++.+. .++..+.++..++.++.        
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~--------  269 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT--------  269 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH--------
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH--------
Confidence                8999999999999999999999999999999998655 445667676621 13788899999999998        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHc-cCCCChHHHHHHHHH
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALS-IDSSHGLSQNNLAVL  635 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~  635 (677)
                                 +.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus       270 -----------~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          270 -----------QQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             -----------HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             -----------ccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence                       99999999999999996 899999888877654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=1.4e-20  Score=192.53  Aligned_cols=309  Identities=14%  Similarity=0.145  Sum_probs=167.8

Q ss_pred             hcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy16607        300 HHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDI  379 (677)
Q Consensus       300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~  379 (677)
                      .+.|+.++|.+++++.-    .+ ..| ..+|.++...|++++|++.|.++    ++...+..++..+...|++++|+.+
T Consensus        14 ~~~~~ld~A~~fae~~~----~~-~vW-s~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN----EP-AVW-SQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC----Ch-HHH-HHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            34689999999999982    22 244 69999999999999999999774    5667889999999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH
Q psy16607        380 GRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA  459 (677)
Q Consensus       380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  459 (677)
                      ++.+.+..+ ++.+...++.+|.+.|++.++.++++.     | +..+|..+|..+...|++++|..+|.++        
T Consensus        84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred             HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            999888644 477888999999999999999988853     4 4469999999999999999999999977        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL  539 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  539 (677)
                      ..|..+|.++.++|++++|++.++++     .+  +.+|...+.++.        ..|+++.|..+... +...|+   -
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~--~~~Wk~v~~aCv--------~~~ef~lA~~~~l~-L~~~ad---~  209 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NS--TRTWKEVCFACV--------DGKEFRLAQMCGLH-IVVHAD---E  209 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TC--HHHHHHHHHHHH--------HTTCHHHHHHTTTT-TTTCHH---H
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CC--chhHHHHHHHHH--------HcCcHHHHHHHHHH-HHhCHh---h
Confidence            47899999999999999999999999     23  888999999988        99999999887775 334444   4


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      ...+..+|.+.|++++|+.++++++.  .++.+..+|..++.+|.                 -++.++..+.++.|...+
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~-----------------ky~p~k~~ehl~~~~~~i  270 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYS-----------------KFKPQKMREHLELFWSRV  270 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH-----------------hcCHHHHHHHHHHHHHHh
Confidence            55688999999999999999999998  88999999999999885                 236677888888888888


Q ss_pred             ccCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHH
Q psy16607        620 SIDS-----SHGLSQNNLAVLEAREGHIERASTYLQAAAAS------------SPYLYETHYNQAVISN  671 (677)
Q Consensus       620 ~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~  671 (677)
                      .+.|     .++..|..+..+|...++++.|+...-+....            .+.+.+.+|.....|.
T Consensus       271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl  339 (449)
T 1b89_A          271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL  339 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence            8877     77889999999999999999999877665444            6778888887776665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.82  E-value=4.6e-19  Score=177.86  Aligned_cols=222  Identities=9%  Similarity=0.010  Sum_probs=172.5

Q ss_pred             ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHH
Q psy16607        406 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVV  479 (677)
Q Consensus       406 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~  479 (677)
                      ++++|+..|.++              |.+|...|++++|+..|++++.+.+.      ...++.++|.+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            366777777665              44566777777777777777765321      2467888888888888999999


Q ss_pred             HHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccC-CCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHH
Q psy16607        480 TCFERALSLALNE----NAADVWYNISHVAILNALSTSVYN-DQPEVALLFYRRLLQMGLYN------AELFNNLALCCF  548 (677)
Q Consensus       480 ~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~  548 (677)
                      .+|++++.+.+..    ....++.++|.++.        .. |++++|+.+|++++++.|..      ..++.++|.++.
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~--------~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILE--------NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            9888888887653    12567889999998        85 99999999999999887754      567899999999


Q ss_pred             hccCHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        549 YSQQYDMVVTCFERALSLALNENAA-------DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       549 ~~g~~~~A~~~~~~al~~~~~p~~~-------~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                      .+|++++|+.+|++++.  ..|+..       .++.++|.++.                   .+|++++|+.+|++++++
T Consensus       170 ~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          170 LDGQYIEASDIYSKLIK--SSMGNRLSQWSLKDYFLKKGLCQL-------------------AATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HTTCHHHHHHHHHHHHH--TTSSCTTTGGGHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHGGGCC
T ss_pred             HhCCHHHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhh
Confidence            99999999999999999  555432       36889999998                   999999999999999999


Q ss_pred             CCCChHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        622 DSSHGLS-----QNNLAVLEA--REGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       622 ~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                      +|.....     +..++..+.  ..+++++|+..|++++.++|.+...+..+-...
T Consensus       229 ~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            9987653     445566554  457899999999999999998877776665544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.82  E-value=6.4e-18  Score=176.39  Aligned_cols=292  Identities=15%  Similarity=0.055  Sum_probs=226.8

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcC--CCHHHH--HHHHH--HHHHcCCHHHHH---------HHHHHHHccCC------CH
Q psy16607        299 YHHENDVASAMDLAVESTKACEF--RDWWWK--VQLGK--CYFSLGLIREAQ---------QQFNSALNQFT------DI  357 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~--~~la~--~~~~~g~~~~A~---------~~~~~al~~~p------~~  357 (677)
                      ++..+++++|..+++++....+.  .+....  +.+-.  .....+.+..+.         ..++++-....      ..
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~  101 (378)
T 3q15_A           22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY  101 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence            46789999999999988664321  222222  22211  111122222222         44444433221      22


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-------C
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYP------NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-------C  424 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~  424 (677)
                      ..++.+|..+...|++++|+..|+++++..+      ....++..+|.++...|++++|+.++++++...+.       .
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            3567899999999999999999999987642      24568999999999999999999999999987553       2


Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hhcccc
Q psy16607        425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALS-----LALNEN  493 (677)
Q Consensus       425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~  493 (677)
                      ..++..+|.++...|++++|+.+|++++.+.+.      ...++.++|.+|...|++++|+.+|++++.     .+|.. 
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-  260 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-  260 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-
Confidence            557889999999999999999999999986431      246789999999999999999999999999     55655 


Q ss_pred             hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHH
Q psy16607        494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-----LYNAELFNNLALCCFYSQQ---YDMVVTCFERALS  565 (677)
Q Consensus       494 ~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~  565 (677)
                       ..++..+|.++.        ..|++++|+.+++++++..     +.....+..++.++...++   +.+|+.++++.- 
T Consensus       261 -~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-  330 (378)
T 3q15_A          261 -PKVLFGLSWTLC--------KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-  330 (378)
T ss_dssp             -HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-
T ss_pred             -HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-
Confidence             889999999998        9999999999999999873     4445667788888888888   888888888732 


Q ss_pred             HhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC
Q psy16607        566 LALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID  622 (677)
Q Consensus       566 ~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~  622 (677)
                        ..+.....+..+|.+|.                   ..|++++|+.+|+++++..
T Consensus       331 --~~~~~~~~~~~la~~y~-------------------~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          331 --LHAYIEACARSAAAVFE-------------------SSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             --CHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHH
T ss_pred             --ChhHHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHH
Confidence              34566678889999999                   9999999999999998753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.81  E-value=9.2e-19  Score=172.64  Aligned_cols=199  Identities=11%  Similarity=0.117  Sum_probs=167.0

Q ss_pred             HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-ch
Q psy16607        419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NA  494 (677)
Q Consensus       419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~  494 (677)
                      ...|.++..++.+|..+...|++++|+..|+++++..|.+   +.+++.+|.++...|++++|+..|++++...|++ ..
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            4567778888888888888888888888888888888877   7888888888888888888888888888887755 44


Q ss_pred             HHHHHHHHHHHHHhhhccccc--------CCCHHHHHHHHHHHHHcCCCcHHHH-----------------HHHHHHHHh
Q psy16607        495 ADVWYNISHVAILNALSTSVY--------NDQPEVALLFYRRLLQMGLYNAELF-----------------NNLALCCFY  549 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~  549 (677)
                      ..+++.+|.++.        .        .|++++|+..|+++++..|++..+.                 +.+|.++..
T Consensus        89 ~~a~~~lg~~~~--------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           89 PQAEYERAMCYY--------KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             HHHHHHHHHHHH--------HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888998887        6        8999999999999999999886655                 888999999


Q ss_pred             ccCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC----------CCHHHHHHHHH
Q psy16607        550 SQQYDMVVTCFERALSLALNEN---AADVWYNISHVAIITECSPFSFSTHTSYLFIQGI----------SDTRLAIQCLH  616 (677)
Q Consensus       550 ~g~~~~A~~~~~~al~~~~~p~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~----------g~~~~A~~~~~  616 (677)
                      .|++++|+..|++++.  ..|+   ...+++.+|.+|.                   .+          |++++|+..|+
T Consensus       161 ~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~-------------------~~g~~~~~~~~~~~~~~A~~~~~  219 (261)
T 3qky_A          161 RELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYI-------------------AYAEQSVRARQPERYRRAVELYE  219 (261)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHH-------------------HHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHH-------------------HhcccchhhcccchHHHHHHHHH
Confidence            9999999999999999  6776   6789999999997                   55          89999999999


Q ss_pred             HHHccCCCCh---HHHHHHHHHHHHcCCHHHHH
Q psy16607        617 LALSIDSSHG---LSQNNLAVLEAREGHIERAS  646 (677)
Q Consensus       617 ~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  646 (677)
                      ++++..|+++   .+...++.++...|+++++.
T Consensus       220 ~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          220 RLLQIFPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999885   45667777777777766544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.81  E-value=8.7e-18  Score=174.98  Aligned_cols=298  Identities=11%  Similarity=0.003  Sum_probs=193.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC--CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHH
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFT--DI----EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE------VTIMTE  396 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  396 (677)
                      .+|.++...|++++|+..+++++...|  +.    .++..+|.++...|++++|+..+++++...|..      ..++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            344444445555555555555544433  11    234445555555555555555555555443221      123455


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----CHHHHH
Q psy16607        397 MARIFEGLNNMPMSVKYYKLILKRD--------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-----NAELFN  463 (677)
Q Consensus       397 la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~  463 (677)
                      +|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+.     ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            6666666666666666666666553        223445566777777777777777777777766543     245678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHH-----HHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWY-----NISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--  536 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--  536 (677)
                      .+|.++...|++++|...+++++...+.......+.     ..+.++.        ..|++++|...+++++...+..  
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~  250 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ--------MTGDKAAAANWLRHTAKPEFANNH  250 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH--------HCCCHHHHHHHHHhCCCCCCCcch
Confidence            889999999999999999999887754321111111     2334455        7899999999999998776543  


Q ss_pred             --HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607        537 --AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL  610 (677)
Q Consensus       537 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~  610 (677)
                        ...+..++.++...|++++|+..+++++......    ....++..++.++.                   ..|++++
T Consensus       251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~  311 (373)
T 1hz4_A          251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW-------------------QAGRKSD  311 (373)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HHTCHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-------------------HhCCHHH
Confidence              3467889999999999999999999998843221    22357788888888                   9999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                      |...+++++.+.+...     ....+...|  +.....+++.+...|.+.
T Consensus       312 A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~~~~~  354 (373)
T 1hz4_A          312 AQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLNTLPE  354 (373)
T ss_dssp             HHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence            9999999998654211     112233333  677888888888888643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=1.6e-18  Score=173.95  Aligned_cols=248  Identities=13%  Similarity=0.002  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHhhCcCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16607        307 SAMDLAVESTKACEFRDWWWKVQLGKCYFSL--G-LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNA  383 (677)
Q Consensus       307 ~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a  383 (677)
                      +|.+++.++-+..+.....+      .++..  + ++++|+..|+++             |.+|...|++++|+..|+++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~------~~~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM------KLFSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH------HHHSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc------hhcCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHH
Confidence            46677777777764432332      11232  2 589999999887             56788899999999999999


Q ss_pred             HHcCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhC-CChHHHHHHHHH
Q psy16607        384 LDCYPN------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYN-DQPEVALLFYRR  450 (677)
Q Consensus       384 l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~  450 (677)
                      +++.+.      ...++..+|.+|...|++++|+.+|++++.+.+..      ..++..+|.+|... |++++|+.+|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            887431      25688999999999999999999999999987753      56889999999996 999999999999


Q ss_pred             HHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccch-----HHHHHHHHHHHHHhhhcccccCCCH
Q psy16607        451 LLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-----ADVWYNISHVAILNALSTSVYNDQP  519 (677)
Q Consensus       451 al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~l~~~~~l~~l~~~~~~~~~  519 (677)
                      ++++.|..      ..++..+|.++...|++++|+.+|++++...|++..     ...+.++|.++.        ..|++
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~--------~~g~~  215 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL--------AATDA  215 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH--------HTTCH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH--------HcCCH
Confidence            99987754      467899999999999999999999999999887621     236889999998        99999


Q ss_pred             HHHHHHHHHHHHcCCCcHHH-----HHHHHHHHH--hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q psy16607        520 EVALLFYRRLLQMGLYNAEL-----FNNLALCCF--YSQQYDMVVTCFERALSLALNENAADVWYNISHVA  583 (677)
Q Consensus       520 ~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~  583 (677)
                      ++|+..|+++++++|.....     +..++..+.  ..+++++|+..|++++.  .+|....++..+-..+
T Consensus       216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHh
Confidence            99999999999999986653     445666664  56789999999999988  7888777766665544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.80  E-value=9.7e-18  Score=174.63  Aligned_cols=272  Identities=11%  Similarity=-0.010  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------H
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV-----TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------M  425 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  425 (677)
                      ..++..+|.++...|++++|+..+++++...|.+.     .++..+|.++...|++++|+..+++++...+..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45677889999999999999999999999887542     267889999999999999999999999886643      2


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc---ch
Q psy16607        426 EAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NA  494 (677)
Q Consensus       426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  494 (677)
                      .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+..   ..
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            346789999999999999999999999864        2345678889999999999999999999999887643   13


Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC--CcHHHHH-----HHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL--YNAELFN-----NLALCCFYSQQYDMVVTCFERALSLA  567 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~  567 (677)
                      ..++..++.++.        ..|++++|...+++++...+  ..+..+.     .++.++...|++++|..++++++.  
T Consensus       174 ~~~~~~la~~~~--------~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--  243 (373)
T 1hz4_A          174 LQCLAMLIQCSL--------ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--  243 (373)
T ss_dssp             HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence            567888999988        99999999999999987632  2211121     345668899999999999999987  


Q ss_pred             hccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHH
Q psy16607        568 LNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEA  637 (677)
Q Consensus       568 ~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~  637 (677)
                      ..+..    ...+..++.++.                   ..|++++|+..+++++...+.      ...++..+|.++.
T Consensus       244 ~~~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~  304 (373)
T 1hz4_A          244 PEFANNHFLQGQWRNIARAQI-------------------LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW  304 (373)
T ss_dssp             CCCTTCGGGHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence            44322    345678888888                   999999999999999876432      1257888999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCC
Q psy16607        638 REGHIERASTYLQAAAASSP  657 (677)
Q Consensus       638 ~~g~~~~A~~~~~~al~~~p  657 (677)
                      ..|++++|...+++++.+.+
T Consensus       305 ~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          305 QAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.4e-18  Score=195.01  Aligned_cols=184  Identities=11%  Similarity=-0.036  Sum_probs=165.6

Q ss_pred             HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH--------HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607        385 DCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLIL--------KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  456 (677)
Q Consensus       385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  456 (677)
                      ..+|+++.+++..+   ...|++++|++.|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            45677777777666   77899999999999999        88899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       457 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      ++..+++.+|.++...|++++|+..|+++++++|++  ..+++++|.++.        ..|++++ +..|+++++.+|++
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~--------~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALAATAE--------LAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHH--------HHTCCCT-TCHHHHHHHHCTTC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH--------HcCChHH-HHHHHHHHHhCCch
Confidence            999999999999999999999999999999999988  889999999988        8899999 99999999999999


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      ..+++++|.++...|++++|+..|+++++  .+|++..++.++|.++.
T Consensus       534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~  579 (681)
T 2pzi_A          534 ISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLL  579 (681)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHH
Confidence            99999999999999999999999999998  88999999999999886

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1e-18  Score=196.10  Aligned_cols=188  Identities=11%  Similarity=-0.062  Sum_probs=175.7

Q ss_pred             HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607        419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL--------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  490 (677)
Q Consensus       419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  490 (677)
                      ..+|+++.+++..+   ...|++++|++.+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            45677777777666   78899999999999999        89999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc
Q psy16607        491 NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  570 (677)
Q Consensus       491 ~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p  570 (677)
                      ++  ..+|+.+|.++.        ..|++++|+..|+++++.+|+++.+++++|.++...|++++ +..|+++++  .+|
T Consensus       465 ~~--~~a~~~lg~~~~--------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P  531 (681)
T 2pzi_A          465 WR--WRLVWYRAVAEL--------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TND  531 (681)
T ss_dssp             CC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCT
T ss_pred             ch--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCC
Confidence            98  999999999998        99999999999999999999999999999999999999999 999999999  899


Q ss_pred             chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCC
Q psy16607        571 NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  641 (677)
Q Consensus       571 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  641 (677)
                      ++..+|+++|.++.                   ..|++++|+..|+++++++|++..++.++|.++...|+
T Consensus       532 ~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          532 GVISAAFGLARARS-------------------AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             chHHHHHHHHHHHH-------------------HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999999999                   99999999999999999999999999999999988666

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=4.8e-18  Score=167.50  Aligned_cols=194  Identities=11%  Similarity=0.037  Sum_probs=171.4

Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607        452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL  530 (677)
Q Consensus       452 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al  530 (677)
                      ....|.++..++.+|..+...|++++|+..|++++...|.+ ....+++.+|.++.        ..|++++|+..|++++
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~--------~~~~~~~A~~~~~~~l   79 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY--------QNKEYLLAASEYERFI   79 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--------HhCcHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999886 33789999999998        9999999999999999


Q ss_pred             HcCCC---cHHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHHhhccchHHHH-----------------HHHHHH
Q psy16607        531 QMGLY---NAELFNNLALCCFY--------SQQYDMVVTCFERALSLALNENAADVW-----------------YNISHV  582 (677)
Q Consensus       531 ~~~p~---~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~p~~~~~~-----------------~~l~~~  582 (677)
                      +..|+   .+.+++.+|.++..        .|++++|+..|++++.  ..|++..++                 +.+|.+
T Consensus        80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~  157 (261)
T 3qky_A           80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARL  157 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99874   46789999999999        9999999999999999  778765544                 778888


Q ss_pred             HHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC---ChHHHHHHHHHHHHc----------CCHHHHHHHH
Q psy16607        583 AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS---HGLSQNNLAVLEARE----------GHIERASTYL  649 (677)
Q Consensus       583 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~  649 (677)
                      |.                   ..|++++|+..|+++++..|+   .+.+++.+|.++..+          |++++|+..|
T Consensus       158 ~~-------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~  218 (261)
T 3qky_A          158 YE-------------------RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY  218 (261)
T ss_dssp             HH-------------------HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             HH-------------------HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence            88                   999999999999999999998   457999999999977          9999999999


Q ss_pred             HHHHHhCCCCh---HHHHHHHHHHHhcC
Q psy16607        650 QAAAASSPYLY---ETHYNQAVISNLVS  674 (677)
Q Consensus       650 ~~al~~~p~~~---~~~~~la~~~~~~G  674 (677)
                      +++++..|+++   .+...++.++..+|
T Consensus       219 ~~~~~~~p~~~~~~~a~~~l~~~~~~~~  246 (261)
T 3qky_A          219 ERLLQIFPDSPLLRTAEELYTRARQRLT  246 (261)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999995   55666777766654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=3.9e-19  Score=158.95  Aligned_cols=140  Identities=10%  Similarity=0.031  Sum_probs=134.6

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcc
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFS  594 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~  594 (677)
                      ..|++++|+..+++++..+|.++..++.+|.+|...|++++|+.+|+++++  .+|+++.+|..+|.++.          
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~----------   76 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYE----------   76 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH----------
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH----------
Confidence            789999999999999999999999999999999999999999999999999  89999999999999999          


Q ss_pred             cchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        595 THTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY-LQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       595 ~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                               ..|++++|+..|+++++++|+++.+++++|.++...|++++|... ++++++++|+++.++..++.++...
T Consensus        77 ---------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           77 ---------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             ---------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             ---------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence                     999999999999999999999999999999999999999887765 5999999999999999999999988


Q ss_pred             CC
Q psy16607        674 SV  675 (677)
Q Consensus       674 G~  675 (677)
                      |+
T Consensus       148 G~  149 (150)
T 4ga2_A          148 GE  149 (150)
T ss_dssp             CC
T ss_pred             Cc
Confidence            85

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.78  E-value=4.9e-18  Score=161.08  Aligned_cols=166  Identities=13%  Similarity=0.124  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHhCc
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTE----------------MARIFEGLNNMPMSVKYYKLILKRDA  422 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p  422 (677)
                      .++..|..+...|++++|+..|+++++.+|+++.+++.                +|.++...|++++|+..|+++++++|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   85 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP   85 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            33444444444444444444444444444444444444                55555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607        423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENAADVWYN  500 (677)
Q Consensus       423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~  500 (677)
                      ++..++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+  ...+...+++++...|.   ..+++.
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~  162 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---QYARYR  162 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---HHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---hHHHHH
Confidence            5555555555555555555555555555555555555555555555544432  23344444444432222   234444


Q ss_pred             HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607        501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY  535 (677)
Q Consensus       501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~  535 (677)
                      +|.++.        ..|++++|+..|+++++++|+
T Consensus       163 ~g~~~~--------~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          163 DGLSKL--------FTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHH--------HHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHH--------HccCHHHHHHHHHHHHHhCCC
Confidence            454444        445555555555555555554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=8.1e-19  Score=179.52  Aligned_cols=301  Identities=9%  Similarity=0.022  Sum_probs=173.9

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHc
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRL  370 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~  370 (677)
                      ....++.++...|++++|++.|.++.      +...+..++.++...|++++|+.+++.+.+..+++.+...++.+|.++
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfika~------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl  107 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT  107 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh
Confidence            34466777888999999999998742      333447888899999999999999999988766778888999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy16607        371 DQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR  450 (677)
Q Consensus       371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  450 (677)
                      |++.++.++++.     | +...|..+|..+...|+|++|..+|.++        ..|..+|.++.++|++++|++.+++
T Consensus       108 g~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~K  173 (449)
T 1b89_A          108 NRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK  173 (449)
T ss_dssp             -CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999888752     4 4569999999999999999999999977        4788999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607        451 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL  530 (677)
Q Consensus       451 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al  530 (677)
                      +     .++..|.....++...|+++.|..+... +...|+     -...+...|.        +.|++++|+.++++++
T Consensus       174 A-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad-----~l~~lv~~Ye--------k~G~~eEai~lLe~aL  234 (449)
T 1b89_A          174 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD-----ELEELINYYQ--------DRGYFEELITMLEAAL  234 (449)
T ss_dssp             H-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH-----HHHHHHHHHH--------HTTCHHHHHHHHHHHT
T ss_pred             c-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh-----hHHHHHHHHH--------HCCCHHHHHHHHHHHh
Confidence            9     4789999999999999999999888775 335544     3446777887        9999999999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        531 QMGLYNAELFNNLALCCFY--SQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       531 ~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~p-----~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      ..++.+..+|..+|.+|.+  .++..+.++.|...+.  +.|     .+...|..+..+|.                   
T Consensus       235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~w~e~~~ly~-------------------  293 (449)
T 1b89_A          235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYD-------------------  293 (449)
T ss_dssp             TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTCHHHHHHHHH-------------------
T ss_pred             CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            9999999999999999875  4577888888877666  455     66778999999998                   


Q ss_pred             cCCCHHHHHHHHHHHHcc------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        604 GISDTRLAIQCLHLALSI------------DSSHGLSQNNLAVLEAREGHIERASTYLQAAA  653 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  653 (677)
                      ..++++.|+...-+....            .+.+.+.++.....|.  +....++..+..++
T Consensus       294 ~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          294 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             HTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             hhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence            999999998876655433            5667888888777776  45556677777776

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.78  E-value=2.2e-17  Score=152.60  Aligned_cols=169  Identities=11%  Similarity=0.121  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16607        324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFE  402 (677)
Q Consensus       324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  402 (677)
                      ..++..+|.++...|++++|+..|+++++..| +..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34557899999999999999999999999888 88999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607        403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF  482 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  482 (677)
                      ..|++++|+.++++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccc
Q psy16607        483 ERALSLALNE  492 (677)
Q Consensus       483 ~~al~~~p~~  492 (677)
                      ++++...|++
T Consensus       168 ~~~~~~~~~~  177 (186)
T 3as5_A          168 KKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHcCCCc
Confidence            9999998876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.77  E-value=2.5e-16  Score=157.21  Aligned_cols=241  Identities=10%  Similarity=0.020  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--HH
Q psy16607        409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQ----------PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--YD  476 (677)
Q Consensus       409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~  476 (677)
                      +|+..+.+++..+|++..+|...+.++...+.          +++++.+++.++..+|.+..+|+..+.++...++  ++
T Consensus        48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~  127 (331)
T 3dss_A           48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA  127 (331)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence            44444555555555554444444444444333          4566666666666666666666666666666663  66


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----
Q psy16607        477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ-PEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----  550 (677)
Q Consensus       477 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----  550 (677)
                      +++.++.++++.+|.+  ..+|...+.+..        ..|. ++++++++.++++.+|.+..+|..++.++...     
T Consensus       128 ~EL~~~~k~l~~dprN--y~AW~~R~~vl~--------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          128 RELELCARFLEADERN--FHCWDYRRFVAA--------QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             HHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence            6666666666666666  666666666665        5555 46666666777777777777777666666655     


Q ss_pred             ---------cCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc
Q psy16607        551 ---------QQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI  621 (677)
Q Consensus       551 ---------g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~  621 (677)
                               +.++++++++.+++.  .+|++..+|+.+..++...   ..    .... .....+.++++++.+++++++
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~---~~----~~~~-~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG---SG----RCEL-SVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS---SC----GGGC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc---cC----cccc-chHHHHHHHHHHHHHHHHHhh
Confidence                     568899999999999  8999999998666655400   00    0000 001225689999999999999


Q ss_pred             CCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        622 DSSHGLSQNNLAVLEA---REGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       622 ~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      .|++...+..++.+..   ..|..++...++.+.++++|....-|..+..-
T Consensus       268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            9998655554444332   35888999999999999999988777666543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.77  E-value=1.8e-17  Score=153.25  Aligned_cols=172  Identities=15%  Similarity=0.156  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHH
Q psy16607        459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAE  538 (677)
Q Consensus       459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~  538 (677)
                      ...+..+|.++...|++++|+..+++++...|.+  ..++..+|.++.        ..|++++|+..++++++..|.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~   77 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--VDVALHLGIAYV--------KTGAVDRGTELLERSLADAPDNVK   77 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--hHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCHH
Confidence            4567778888888888888888888888888877  788888888887        888888888888888888888888


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      ++..+|.++...|++++|+.++++++.  ..|.+..++..+|.++.                   ..|++++|+..++++
T Consensus        78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~~~~  136 (186)
T 3as5_A           78 VATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALD-------------------NLGRFDEAIDSFKIA  136 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHH-------------------HcCcHHHHHHHHHHH
Confidence            888888888888999999999999888  77888888888998888                   899999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      +...|.++.++..+|.++...|++++|..+++++++.+|++..
T Consensus       137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            9999988899999999999999999999999999998887754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.77  E-value=5.5e-18  Score=168.34  Aligned_cols=231  Identities=19%  Similarity=0.169  Sum_probs=170.4

Q ss_pred             HcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHH
Q psy16607        403 GLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNAELFNNLA  466 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la  466 (677)
                      ..|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++...        |....++..+|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            456666666666666663        24456777788888888888888888888887663        44566788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhh--------cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc------
Q psy16607        467 LCCFYSQQYDMVVTCFERALSLA--------LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM------  532 (677)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~------  532 (677)
                      .++...|++++|+.+|++++...        |..  ..++..+|.++.        ..|++++|+.+++++++.      
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQ--------NQGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcC
Confidence            88888888888888888888773        443  888999999998        999999999999999988      


Q ss_pred             --CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        533 --GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-------NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       533 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                        .|....++..+|.++...|++++|+.+|++++....       .+.....+..++..+...             ....
T Consensus       163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  229 (283)
T 3edt_B          163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK-------------DKRR  229 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT-------------CCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC-------------Cchh
Confidence              777788999999999999999999999999998421       233445566666655400             0001


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  656 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  656 (677)
                      ....+.++...++......|....++..+|.++...|++++|+.+|++++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          230 DSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             C------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            23335555556655555566677899999999999999999999999998753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.77  E-value=7.8e-18  Score=159.70  Aligned_cols=177  Identities=15%  Similarity=0.124  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH----------------HHHHHHHhhhcccccCCCHHHHH
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN----------------ISHVAILNALSTSVYNDQPEVAL  523 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------------l~~~~~l~~l~~~~~~~~~~~A~  523 (677)
                      ..+...|..+...|++++|+.+|++++..+|++  ..+++.                +|.++.        ..|++++|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~--------~~g~~~~A~   74 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR--TEMYYWTNVDKNSEISSKLATELALAYK--------KNRNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHH--------HTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHhhhcchhhhhHHHHHHHHHHHH--------HCCCHHHHH
Confidence            334444455555555555555555555555544  444444                999998        999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      ..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++  .+|+++.+|+++|.+|.                   
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~-------------------  133 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYY-------------------  133 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH-------------------
Confidence            999999999999999999999999999999999999999999  89999999999999986                   


Q ss_pred             cCC--CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        604 GIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       604 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      ..|  +...+...+++++...|. ..+++.+|.++...|++++|+.+|+++++++|+.. +...+..+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i  199 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence            554  355677788887654332 34688899999999999999999999999999754 44455554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=1.9e-18  Score=154.48  Aligned_cols=145  Identities=10%  Similarity=-0.009  Sum_probs=100.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607        330 LGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       330 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      ||.++...|++++|+..+++++...| +...++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            45666666777777777777776666 55666677777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHcCC
Q psy16607        409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF-YRRLLQMGLYNAELFNNLALCCFYSQQ  474 (677)
Q Consensus       409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~g~  474 (677)
                      +|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            777777777777777777777777777777777665554 467777777777777777776666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=4.9e-18  Score=168.76  Aligned_cols=227  Identities=15%  Similarity=0.107  Sum_probs=153.8

Q ss_pred             cCCHHHHHHHHHHHHcc-------C-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHH
Q psy16607        337 LGLIREAQQQFNSALNQ-------F-T-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC--------YPNEVTIMTEMAR  399 (677)
Q Consensus       337 ~g~~~~A~~~~~~al~~-------~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~  399 (677)
                      .|++++|+..|+++++.       + | ...++..+|.++...|++++|+.+++++++.        .|....++..+|.
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            34444444444444442       2 2 4566677777777777777777777777665        2445667777888


Q ss_pred             HHHHcCChhHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--------CCCCHHHHH
Q psy16607        400 IFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFN  463 (677)
Q Consensus       400 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~  463 (677)
                      ++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+++++++.        .|....++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            888888888888888887776        4556777888888888888888888888888877        555667888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhccc-------chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNE-------NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      .+|.++...|++++|+.++++++...+..       .....+..++....  ..........+..+...++......|..
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE--SKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH--TTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            88999999999999999998888764321       11345555555554  1111122334555555555555566777


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      ..++..+|.++...|++++|+.+|+++++
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88999999999999999999999999986

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.75  E-value=1.1e-15  Score=152.46  Aligned_cols=246  Identities=7%  Similarity=0.001  Sum_probs=192.3

Q ss_pred             HcCChH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        369 RLDQPI-RAIDIGRNALDCYPNEVTIMTEMARIFEGLNN----------MPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       369 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      ..|.++ +|+.++.+++..+|++..+|...+.++...+.          +++++.++..++..+|++..+|...+.++..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            445554 67888888888888888888888877777665          6788888888888888888888888888888


Q ss_pred             CCC--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc-
Q psy16607        438 NDQ--PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS-  513 (677)
Q Consensus       438 ~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~-  513 (677)
                      .++  +++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+  ..+|..++.++.  .+... 
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~--~l~~~~  196 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLP--QLHPQP  196 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHH--HHSCCC
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH--Hhhhcc
Confidence            884  7888888888888888888888888888888888 588888888888888888  888888888775  11000 


Q ss_pred             -------ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHhhccchHHH
Q psy16607        514 -------VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----------QQYDMVVTCFERALSLALNENAADV  575 (677)
Q Consensus       514 -------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~p~~~~~  575 (677)
                             ...+.++++++++.+++..+|++..+|+.+..++...           +.+++++++++++++  ..|++.-.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~  274 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWC  274 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchH
Confidence                   0114589999999999999999999998776666665           568999999999999  88988544


Q ss_pred             HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q psy16607        576 WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  636 (677)
Q Consensus       576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  636 (677)
                      +..++.+..                .+...|..++....+.+.++++|....-|..++.-+
T Consensus       275 l~~~~~~~~----------------~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          275 LLTIILLMR----------------ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHH----------------HHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------------hhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            333332221                112467889999999999999998877777665543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=2.8e-17  Score=141.89  Aligned_cols=121  Identities=13%  Similarity=0.027  Sum_probs=115.8

Q ss_pred             HHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        529 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       529 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                      +..++|+.+..+..+|..+++.|+|++|+..|+++++  .+|.++.+|.++|.++.                   .+|++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~-------------------~~~~~   63 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLT-------------------KLMEF   63 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHH-------------------hhccH
Confidence            3457899999999999999999999999999999999  89999999999999999                   99999


Q ss_pred             HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                      ++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++.+++.+++.++
T Consensus        64 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999874

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.73  E-value=5.4e-16  Score=155.30  Aligned_cols=245  Identities=8%  Similarity=-0.038  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFY  471 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  471 (677)
                      ++..+..+....+..++|++.+.+++.++|++..+|...+.++...| .+++++.++++++..+|.+..+|+.++.++..
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44444445555566677888888888888888888888888888887 48888888888888888888888888888887


Q ss_pred             c-C-CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH--------HHHHHHHHHHHcCCCcHHHHH
Q psy16607        472 S-Q-QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE--------VALLFYRRLLQMGLYNAELFN  541 (677)
Q Consensus       472 ~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~  541 (677)
                      . + ++++++.++.++++.+|.+  ..+|...+.+..        ..+.++        ++++++.++++.+|.+..+|.
T Consensus       136 l~~~~~~~EL~~~~k~L~~dpkN--y~AW~~R~wvl~--------~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~  205 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDPKN--YHTWAYLHWLYS--------HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG  205 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCTTC--HHHHHHHHHHHH--------HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            7 7 7888888888888888888  888888888776        555555        999999999999999999999


Q ss_pred             HHHHHHHhccC-------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH------
Q psy16607        542 NLALCCFYSQQ-------YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT------  608 (677)
Q Consensus       542 ~la~~~~~~g~-------~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~------  608 (677)
                      .++.++...++       ++++++++++++.  .+|++..+|+.+..++.                   ..|+.      
T Consensus       206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~-------------------~~~~~~~~~~~  264 (349)
T 3q7a_A          206 WRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLK-------------------HFSLPLVPILP  264 (349)
T ss_dssp             HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCCSGGGHH
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------hcCCCcccccc
Confidence            99999999987       7999999999999  89999999999888776                   33322      


Q ss_pred             --------------HHHHHHHHHHHcc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHH
Q psy16607        609 --------------RLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGHIERASTYLQAAA-ASSPYLYETHYNQA  667 (677)
Q Consensus       609 --------------~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la  667 (677)
                                    .+-.......+..      .+..+.++..|+.+|...|+.++|.++++... +.+|-....|...+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~  344 (349)
T 3q7a_A          265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR  344 (349)
T ss_dssp             HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence                          1222222222222      24567889999999999999999999999987 67888777776555


Q ss_pred             H
Q psy16607        668 V  668 (677)
Q Consensus       668 ~  668 (677)
                      .
T Consensus       345 ~  345 (349)
T 3q7a_A          345 R  345 (349)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.73  E-value=1.8e-16  Score=152.34  Aligned_cols=208  Identities=9%  Similarity=-0.023  Sum_probs=156.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH---HHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LFN  463 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~  463 (677)
                      .+..++.+|..+...|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++..|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            45678888888888899999999999888888865   468888888888888888888888888888887754   678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL  543 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  543 (677)
                      .+|.++...+..                .  ...+..++..+.        ..|++++|+..|+++++..|+++.++..+
T Consensus        83 ~~g~~~~~~~~~----------------~--~~~~~~~~~~~~--------~~~~~~~A~~~~~~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------A--LQGFFGVDRSDR--------DPQQARAAFSDFSKLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             HHHHHHHHHHC----------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             HHHHHHHhhhhh----------------h--hhhhhccchhhc--------CcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            888888766532                1  223445555555        77899999999999999999887655432


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCC
Q psy16607        544 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDS  623 (677)
Q Consensus       544 a~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p  623 (677)
                      ..+...                   ..........+|.+|.                   ..|++++|+..|+++++..|
T Consensus       137 ~~l~~~-------------------~~~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~~~~l~~~p  178 (225)
T 2yhc_A          137 KRLVFL-------------------KDRLAKYEYSVAEYYT-------------------ERGAWVAVVNRVEGMLRDYP  178 (225)
T ss_dssp             HHHHHH-------------------HHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHH-------------------HHHHHHHHHHHHHHHH-------------------HcCcHHHHHHHHHHHHHHCc
Confidence            221110                   1112234456788888                   99999999999999999999


Q ss_pred             CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        624 SHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       624 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      +++   +++..+|.++.++|++++|+..++++....|++.+
T Consensus       179 ~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          179 DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence            886   68999999999999999999999999999887643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.71  E-value=3.8e-14  Score=156.30  Aligned_cols=362  Identities=12%  Similarity=0.036  Sum_probs=265.8

Q ss_pred             hhhhhhhhhchHHHHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcc
Q psy16607        277 SRLNLAKYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGL---IREAQQQFNSALNQ  353 (677)
Q Consensus       277 ~~l~~~~~~~~~~~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  353 (677)
                      ...||.++.....+....     ...++++.+..+|++++...|.....| ...+......|+   ++.+..+|++++..
T Consensus        59 l~~np~d~~~W~~yi~~~-----~~~~~~~~aR~vyEraL~~fP~~~~lW-~~Yi~~E~~~~~~~~~~~v~~lfeRal~~  132 (679)
T 4e6h_A           59 IEEQPTDIFLYVKLLKHH-----VSLKQWKQVYETFDKLHDRFPLMANIW-CMRLSLEFDKMEELDAAVIEPVLARCLSK  132 (679)
T ss_dssp             HHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred             HHHCcCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence            334555544433333332     335899999999999999998777777 577777888888   99999999999998


Q ss_pred             C---CCHHHHHHHHHHHHHcCCh----HH----HHHHHHHHHHc----CCCcHHHHHHHHHHHH---------HcCChhH
Q psy16607        354 F---TDIEAFIRMIRVYIRLDQP----IR----AIDIGRNALDC----YPNEVTIMTEMARIFE---------GLNNMPM  409 (677)
Q Consensus       354 ~---p~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~  409 (677)
                      .   |++..|..........++.    ++    ....|++++..    ++....+|........         ..++.+.
T Consensus       133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~  212 (679)
T 4e6h_A          133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY  212 (679)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence            8   7888888877766665554    33    44777877763    5666667766554433         2345667


Q ss_pred             HHHHHHHHHHhCcCCHH-HH------------------------------------------------------------
Q psy16607        410 SVKYYKLILKRDATCME-AI------------------------------------------------------------  428 (677)
Q Consensus       410 A~~~~~~al~~~p~~~~-~~------------------------------------------------------------  428 (677)
                      +..+|++++........ .|                                                            
T Consensus       213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p  292 (679)
T 4e6h_A          213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP  292 (679)
T ss_dssp             HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence            77888888754211111 11                                                            


Q ss_pred             -------------HHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q psy16607        429 -------------ACIGVNHFYND-------QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV-TCFERALS  487 (677)
Q Consensus       429 -------------~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  487 (677)
                                   ......-...+       ..+.....|++++...|..+.+|...+..+...|+.++|. ..|++++.
T Consensus       293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~  372 (679)
T 4e6h_A          293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ  372 (679)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence                         11110000000       0123456799999999999999999999999999999997 99999999


Q ss_pred             hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc-----------CCC-----------cHHHHHHHHH
Q psy16607        488 LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM-----------GLY-----------NAELFNNLAL  545 (677)
Q Consensus       488 ~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~la~  545 (677)
                      ..|.+  ...|...+....        ..|++++|...|++++..           .|.           ...+|...+.
T Consensus       373 ~~P~s--~~Lwl~~a~~ee--------~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~  442 (679)
T 4e6h_A          373 CIPNS--AVLAFSLSEQYE--------LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN  442 (679)
T ss_dssp             HCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCC--HHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence            99987  888999999888        889999999999999964           242           3457999999


Q ss_pred             HHHhccCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC-CHHHHHHHHHHHHccCC
Q psy16607        546 CCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS-DTRLAIQCLHLALSIDS  623 (677)
Q Consensus       546 ~~~~~g~~~~A~~~~~~al~~~~-~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g-~~~~A~~~~~~al~~~p  623 (677)
                      ...+.|..+.|...|.+|++  . .+....+|...+.+..                   ..+ +++.|...|+++++..|
T Consensus       443 ~erR~~~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~-------------------~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          443 TMKRIQGLAASRKIFGKCRR--LKKLVTPDIYLENAYIEY-------------------HISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             HHHHHHCHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHH-------------------TTTSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHH-------------------HhCCCHHHHHHHHHHHHHHCC
Confidence            99999999999999999998  4 3334566666665554                   554 48999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHhcCC
Q psy16607        624 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY---LYETHYNQAVISNLVSV  675 (677)
Q Consensus       624 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~G~  675 (677)
                      +++..|...+......|+.+.|..+|++++...|+   ....|..........|+
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~  556 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS  556 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence            98888888888888899999999999999998873   44566656666566665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.71  E-value=5.1e-16  Score=149.11  Aligned_cols=188  Identities=11%  Similarity=-0.025  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHH
Q psy16607        324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D---IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVT---IMTE  396 (677)
Q Consensus       324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  396 (677)
                      ...++.+|..++..|++++|+..|+++++..| +   ..+++.+|.++...|++++|+..|+++++.+|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34457889999999999999999999999877 2   478999999999999999999999999999998754   7888


Q ss_pred             HHHHHHHc------------------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        397 MARIFEGL------------------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       397 la~~~~~~------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      +|.++...                  |++++|+..|+++++..|++..++..+..+....+                 ..
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RL  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HH
Confidence            89888763                  45555555555555555554333221111000000                 00


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc
Q psy16607        459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN  536 (677)
Q Consensus       459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~  536 (677)
                      ......+|.+|...|++++|+..|+++++..|++ ....+++.+|.++.        +.|++++|+..++++....|++
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~--------~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR--------QMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH--------HcCCcHHHHHHHHHHHhhCCCc
Confidence            1123567888999999999999999999998886 22477889999988        8899999999998888877764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.71  E-value=2.4e-15  Score=150.58  Aligned_cols=237  Identities=9%  Similarity=-0.051  Sum_probs=188.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC-C-ChHHHHH
Q psy16607        370 LDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-D-QPEVALL  446 (677)
Q Consensus       370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~  446 (677)
                      .+..++|+..+.+++.++|++..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + +++++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            345567888888888888888888888888888888 488888888888888888888888888888776 6 7888888


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC
Q psy16607        447 FYRRLLQMGLYNAELFNNLALCCFYSQQYD--------MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ  518 (677)
Q Consensus       447 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~  518 (677)
                      +++++++.+|.+..+|...+.++...|.++        +++++++++++.+|.+  ..+|...+.++.        ..++
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~--------~l~~  216 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGWRWYLRV--------SRPG  216 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHT--------TSTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------hccc
Confidence            888888888888888888888888887777        9999999999999999  999999999987        6665


Q ss_pred             -------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH--------------------HHHHHHHHHHHHHh----
Q psy16607        519 -------PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY--------------------DMVVTCFERALSLA----  567 (677)
Q Consensus       519 -------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~----  567 (677)
                             ++++++++++++..+|++..+|+.+..++...|+.                    .+-.......+...    
T Consensus       217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (349)
T 3q7a_A          217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED  296 (349)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred             cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence                   79999999999999999999999999998887764                    12222222222100    


Q ss_pred             hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH-ccCCCChHHHHHHHHH
Q psy16607        568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL-SIDSSHGLSQNNLAVL  635 (677)
Q Consensus       568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~  635 (677)
                      ..+..+.++..++.+|.                   ..|+.++|+++++... +.+|-....|...+..
T Consensus       297 ~~~~s~~al~~l~d~~~-------------------~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          297 TPLPVPLALEYLADSFI-------------------EQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             CCSCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            11356778888888888                   9999999999999987 6788777777666543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.69  E-value=3.3e-16  Score=135.06  Aligned_cols=119  Identities=11%  Similarity=0.059  Sum_probs=85.1

Q ss_pred             HHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH
Q psy16607        384 LDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN  463 (677)
Q Consensus       384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  463 (677)
                      ..++|+..+.+..+|..+.+.|++++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|.++.+|+
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            34566666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      .+|.++..+|++++|+..|+++++++|++  ..++..++.+
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~a~~~l~~~  124 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSN--EEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHHh
Confidence            77777777777777777777777777776  6666666654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=6.2e-16  Score=156.20  Aligned_cols=185  Identities=16%  Similarity=0.062  Sum_probs=124.1

Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHH
Q psy16607        433 VNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNIS  502 (677)
Q Consensus       433 ~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~  502 (677)
                      .+|...|++++|+..|.+++.+.+..      ..++.++|.+|...|++++|+.+|++++.+.+..    ....++.++|
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444555555555555555443211      2355566666666666666666666666654321    1245667777


Q ss_pred             HHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----h
Q psy16607        503 HVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----A  572 (677)
Q Consensus       503 ~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~  572 (677)
                      .++.        . |++++|+.+|++++.+.+..      ..++.++|.++..+|++++|+.+|++++.+.....    .
T Consensus       124 ~~~~--------~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          124 KLME--------P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHT--------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH--------c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            7775        5 77888888888777665432      56788999999999999999999999998432111    2


Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH-----HHHHHHHHHHHcCCHHHHHH
Q psy16607        573 ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL-----SQNNLAVLEAREGHIERAST  647 (677)
Q Consensus       573 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~  647 (677)
                      ..++..+|.++.                   ..|++++|+.+|++++ ++|....     .+..++..+ ..|+.+.+..
T Consensus       195 ~~~~~~~g~~~~-------------------~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          195 YKKCIAQVLVQL-------------------HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            347788888888                   9999999999999999 9987642     344555554 5677665554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.69  E-value=2.3e-16  Score=145.22  Aligned_cols=162  Identities=9%  Similarity=-0.007  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF  540 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  540 (677)
                      .+..+|..+...|++++|+..|+++++.+|++  ..+++.+|.++.        ..|++++|+..+++++...| ++..+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~--------~~g~~~~A~~~~~~a~~~~p-~~~~~   76 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR--GDVKLAKADCLL--------ETKQFELAQELLATIPLEYQ-DNSYK   76 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--HHHHHHHHHHHH--------HTTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHH--------HCCCHHHHHHHHHHhhhccC-ChHHH
Confidence            34444555555555555555555555555554  555555555554        55555555555555555555 44443


Q ss_pred             HHHHHHH-HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        541 NNLALCC-FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       541 ~~la~~~-~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      ..++.+. ...+...+|+..|++++.  .+|++..+++.+|.++.                   ..|++++|+..|++++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A           77 SLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYN-------------------QVGRDEEALELLWNIL  135 (176)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcccHHHHHHHHHHHH
Confidence            3333222 122333456777888877  77888888888888877                   8888888888888888


Q ss_pred             ccCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        620 SIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       620 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      +.+|+.  +.++..+|.++...|+.++|+..|++++.
T Consensus       136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            888765  45788888888888888888888887764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.68  E-value=5.7e-16  Score=156.47  Aligned_cols=206  Identities=12%  Similarity=0.029  Sum_probs=171.2

Q ss_pred             HcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        403 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC  481 (677)
Q Consensus       403 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  481 (677)
                      ..|++++|.++++++.+..+..          ++. .+++++|+.+|.++              |.+|...|++++|+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence            3577889999999888776642          122 58899999998876              6788899999999999


Q ss_pred             HHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcc
Q psy16607        482 FERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQ  551 (677)
Q Consensus       482 ~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g  551 (677)
                      |.+++.+.+..    ....++.++|.++.        ..|++++|+.+|++++.+.+.      ...++.++|.+|.. |
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~--------~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g  129 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLK--------DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L  129 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C
Confidence            99999987643    23568889999998        899999999999999977432      24688999999999 9


Q ss_pred             CHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC--
Q psy16607        552 QYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH--  625 (677)
Q Consensus       552 ~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~--  625 (677)
                      ++++|+.+|++++.+.....    ...++.++|.++.                   .+|++++|+.+|++++.+.|.+  
T Consensus       130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-------------------RQQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999432211    2578899999999                   9999999999999999986544  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        626 ----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       626 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                          ..++..+|.++...|++++|+.+|++++ ++|....
T Consensus       191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence                3478889999999999999999999999 9997653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.68  E-value=1.6e-16  Score=146.26  Aligned_cols=162  Identities=9%  Similarity=-0.024  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-H
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF-Y  471 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~  471 (677)
                      .++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++...| ++..+..++.+.. .
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence            3445555555555555555555555555555555555555555555555555555555555555 4444433333321 2


Q ss_pred             cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHh
Q psy16607        472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFY  549 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  549 (677)
                      .+...+|+..++++++.+|++  ..+++.+|.++.        ..|++++|+..|+++++.+|..  ..++..+|.++..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDN--FELACELAVQYN--------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            222233555666666666665  566666666665        5666666666666666666543  4466666666666


Q ss_pred             ccCHHHHHHHHHHHHH
Q psy16607        550 SQQYDMVVTCFERALS  565 (677)
Q Consensus       550 ~g~~~~A~~~~~~al~  565 (677)
                      .|++++|+..|++++.
T Consensus       157 ~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          157 LGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HCSSCHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHH
Confidence            6777777777766664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.68  E-value=1.3e-15  Score=152.20  Aligned_cols=168  Identities=10%  Similarity=-0.055  Sum_probs=102.2

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  467 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  467 (677)
                      |.+.+.+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            55555555555555555666666666666666666555556666666666666666666666555555544444444455


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--HHHHHHHHH
Q psy16607        468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--AELFNNLAL  545 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~  545 (677)
                      .+...++.++|+..|++++..+|++  ..+++.+|.++.        ..|++++|+..|+++++.+|++  ..++..++.
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~--------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPED--AALATQLALQLH--------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHH--------HcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            5555555555666666666666665  666666666665        5666666666666666666655  566666666


Q ss_pred             HHHhccCHHHHHHHHHHHHH
Q psy16607        546 CCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       546 ~~~~~g~~~~A~~~~~~al~  565 (677)
                      ++...|+.++|+..|++++.
T Consensus       264 ~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          264 ILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHHH
Confidence            66677777777777766665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.67  E-value=1.4e-15  Score=151.83  Aligned_cols=169  Identities=11%  Similarity=-0.015  Sum_probs=101.6

Q ss_pred             CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHH
Q psy16607        421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  500 (677)
Q Consensus       421 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  500 (677)
                      .|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+.  ...+..
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~~  190 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT--RYQGLV  190 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--HHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--HHHHHH
Confidence            366666667777777777777777777777777777777777777777777777777777777666666643  333333


Q ss_pred             HHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607        501 ISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS  580 (677)
Q Consensus       501 l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~  580 (677)
                                                                .+..+...++.++|+..|++++.  .+|++..+++.+|
T Consensus       191 ------------------------------------------~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la  226 (287)
T 3qou_A          191 ------------------------------------------AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLA  226 (287)
T ss_dssp             ------------------------------------------HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             ------------------------------------------HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHH
Confidence                                                      33334444445555555555555  4555555555555


Q ss_pred             HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      .++.                   ..|++++|+..|.+++..+|++  ..++.+++.++...|+.++|...|++++.
T Consensus       227 ~~l~-------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          227 LQLH-------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHH-------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHH-------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            5555                   5555555555555555555555  55555666666666666666665555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.67  E-value=4e-16  Score=151.11  Aligned_cols=207  Identities=9%  Similarity=-0.032  Sum_probs=170.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhhccc----------
Q psy16607        430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL-------ALCCFYSQQYDMVVTCFERALSLALNE----------  492 (677)
Q Consensus       430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~----------  492 (677)
                      ..|.-+ ..+++..|.+.|.+++..+|...++|..+       +.++...+++.+++..+.+.+.+.|..          
T Consensus        12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~   90 (282)
T 4f3v_A           12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL   90 (282)
T ss_dssp             HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred             HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence            334444 46778888888888888888888888888       778888888888888888888876654          


Q ss_pred             ---------chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607        493 ---------NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  563 (677)
Q Consensus       493 ---------~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  563 (677)
                               ...+++..++.++.        ..|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+.+|+++
T Consensus        91 y~~~~~~v~~r~dl~LayA~~L~--------~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a  161 (282)
T 4f3v_A           91 YGDITYPVTSPLAITMGFAACEA--------AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA  161 (282)
T ss_dssp             TCCCEEECSSHHHHHHHHHHHHH--------HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred             ccccccccCCHhHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence                     01345556777777        89999999999999999999888 9999999999999999999999987


Q ss_pred             HHHhhccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC--CC-ChHHHHHHHHHHHHc
Q psy16607        564 LSLALNENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID--SS-HGLSQNNLAVLEARE  639 (677)
Q Consensus       564 l~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~  639 (677)
                      .... +|.. ..+++.+|.++.                   .+|++++|+.+|++++...  |. .+++++.+|.++.++
T Consensus       162 ~~~~-d~~~~~~a~~~LG~al~-------------------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l  221 (282)
T 4f3v_A          162 GKWP-DKFLAGAAGVAHGVAAA-------------------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ  221 (282)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH
T ss_pred             hccC-CcccHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc
Confidence            7511 2222 468999999999                   9999999999999998654  55 667999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        640 GHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       640 g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      |+.++|...|++++..+|+ ..++..|.
T Consensus       222 Gr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          222 GNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            9999999999999999999 87776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=1.1e-15  Score=168.51  Aligned_cols=165  Identities=11%  Similarity=0.032  Sum_probs=138.1

Q ss_pred             cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q psy16607        472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  551 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  551 (677)
                      .|++++|+..|+++++.+|++  ..+++.+|.++.        ..|++++|+..|+++++.+|++..++..+|.++...|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   71 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD--FVAWLMLADAEL--------GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ   71 (568)
T ss_dssp             -------------------CC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            478899999999999999998  999999999998        8999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHH
Q psy16607        552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNN  631 (677)
Q Consensus       552 ~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~  631 (677)
                      ++++|+.+|+++++  .+|++..++.++|.++.                   ..|++++|+..|+++++.+|++..++..
T Consensus        72 ~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~  130 (568)
T 2vsy_A           72 RHAEAAVLLQQASD--AAPEHPGIALWLGHALE-------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQ  130 (568)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999  88999999999999999                   9999999999999999999999999999


Q ss_pred             HHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        632 LAVLEARE---GHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       632 la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      +|.++...   |++++|...|+++++.+|++...+..++
T Consensus       131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            99999999   9999999999999999998876665444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.66  E-value=5.6e-16  Score=137.70  Aligned_cols=116  Identities=7%  Similarity=-0.066  Sum_probs=111.6

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      ..+++++..+|+++.+++.+|.++...|++++|+.+|++++.  .+|+++.+|.++|.++.                   
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~-------------------   81 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQ-------------------   81 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------
Confidence            446677889999999999999999999999999999999999  89999999999999999                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                      ..|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999999999999999999876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.65  E-value=3.5e-15  Score=164.51  Aligned_cols=164  Identities=10%  Similarity=-0.016  Sum_probs=103.6

Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ  518 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~  518 (677)
                      |++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++  ..++..+|.++.        ..|+
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~g~   72 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRW--------TQQR   72 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHH--------HTTC
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------HCCC
Confidence            556666666666666666666666666666666667777777777776666666  666667776666        6677


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607        519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS  598 (677)
Q Consensus       519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~  598 (677)
                      +++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++  .+|++..++..++.++.              
T Consensus        73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~--------------  136 (568)
T 2vsy_A           73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRR--------------  136 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH--------------
Confidence            77777777777777777777777777777777777777777777777  66777777777777776              


Q ss_pred             hhHHhcC---CCHHHHHHHHHHHHccCCCChHHHHHHH
Q psy16607        599 YLFIQGI---SDTRLAIQCLHLALSIDSSHGLSQNNLA  633 (677)
Q Consensus       599 ~~~l~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la  633 (677)
                           ..   |++++|+..|+++++.+|.+...+..++
T Consensus       137 -----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          137 -----RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             -----HTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             -----HhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence                 66   7777777777777777777666665555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.65  E-value=3.3e-13  Score=148.82  Aligned_cols=339  Identities=9%  Similarity=0.025  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q psy16607        307 SAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQ---PIRAIDIGRN  382 (677)
Q Consensus       307 ~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~---~~~A~~~~~~  382 (677)
                      +-+..+++.+..+|.+...| ..++......+.++.+...|++++...| ....|...+....+.++   ++.+..+|++
T Consensus        50 d~i~~lE~~l~~np~d~~~W-~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR  128 (679)
T 4e6h_A           50 DVIGKLNDMIEEQPTDIFLY-VKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR  128 (679)
T ss_dssp             CHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCCHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence            45667888889997766666 6888888889999999999999999999 88999999999999999   9999999999


Q ss_pred             HHHcCC--CcHHHHHHHHHHHHHcCCh----hH----HHHHHHHHHHh----CcCCHHHHHHHHHHHHh---------CC
Q psy16607        383 ALDCYP--NEVTIMTEMARIFEGLNNM----PM----SVKYYKLILKR----DATCMEAIACIGVNHFY---------ND  439 (677)
Q Consensus       383 al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~---------~g  439 (677)
                      ++...|  .+.++|..........++.    ++    ..+.|++++..    ++.....|.........         .+
T Consensus       129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~  208 (679)
T 4e6h_A          129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ  208 (679)
T ss_dssp             HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence            999983  5788888877766665554    33    44788888764    66677777766655432         33


Q ss_pred             ChHHHHHHHHHHHHcCCCCH-HHHHH----------------H---------HH-HH-----------------------
Q psy16607        440 QPEVALLFYRRLLQMGLYNA-ELFNN----------------L---------AL-CC-----------------------  469 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~-~~~~~----------------l---------a~-~~-----------------------  469 (677)
                      +.+.+..+|++++.+-.... ..|..                +         +. .+                       
T Consensus       209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~  288 (679)
T 4e6h_A          209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE  288 (679)
T ss_dssp             HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence            45677788888775421111 11100                0         00 00                       


Q ss_pred             ----------------------HHcCC---------HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC
Q psy16607        470 ----------------------FYSQQ---------YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ  518 (677)
Q Consensus       470 ----------------------~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~  518 (677)
                                            +...+         .+.....|++++...|..  +..|+..+....        ..|+
T Consensus       289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~--~~lW~~ya~~~~--------~~~~  358 (679)
T 4e6h_A          289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA--PEIWFNMANYQG--------EKNT  358 (679)
T ss_dssp             TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHH--------HHSC
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH--------hcCc
Confidence                                  00011         123456799999999987  999999999887        7788


Q ss_pred             HHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh---------ccc-----------hHHHHH
Q psy16607        519 PEVAL-LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---------NEN-----------AADVWY  577 (677)
Q Consensus       519 ~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------~p~-----------~~~~~~  577 (677)
                      .++|+ ..|++++...|.+...|..++......|++++|..+|++++....         .|.           ...+|.
T Consensus       359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi  438 (679)
T 4e6h_A          359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC  438 (679)
T ss_dssp             CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence            88997 999999999999999999999999999999999999999997310         132           345677


Q ss_pred             HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q psy16607        578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-DSSHGLSQNNLAVLEAREGH-IERASTYLQAAAAS  655 (677)
Q Consensus       578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  655 (677)
                      ..+.+..                   +.|+.+.|...|.+|++. .+....+|...+.+....|+ ++.|..+|+++++.
T Consensus       439 ~y~~~er-------------------R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          439 VYMNTMK-------------------RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY  499 (679)
T ss_dssp             HHHHHHH-------------------HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------------------HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            7777776                   889999999999999987 44556788888888777655 99999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCC
Q psy16607        656 SPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       656 ~p~~~~~~~~la~~~~~~G~  675 (677)
                      .|+++..+...+......|+
T Consensus       500 ~p~~~~~w~~y~~fe~~~~~  519 (679)
T 4e6h_A          500 FATDGEYINKYLDFLIYVNE  519 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCchHHHHHHHHHHHhCCC
Confidence            99999988777777666665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.65  E-value=5.9e-16  Score=149.95  Aligned_cols=209  Identities=7%  Similarity=-0.140  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHhCcCCH-------
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEM-------ARIFEGLNNMPMSVKYYKLILKRDATCM-------  425 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~-------  425 (677)
                      ++..|.-+ ..+++..|...|.+++..+|...++|..+       +.++...++..+++..+++.+.+.|...       
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~   88 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG   88 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence            34444444 57899999999999999999999999999       8899999999999999999999877543       


Q ss_pred             --------------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        426 --------------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       426 --------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                                    ++...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+++....+.
T Consensus        89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~  167 (282)
T 4f3v_A           89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK  167 (282)
T ss_dssp             TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred             CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence                          3445588899999999999999999998888888 9999999999999999999999987765322


Q ss_pred             cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607        492 ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG--LY-NAELFNNLALCCFYSQQYDMVVTCFERALSLAL  568 (677)
Q Consensus       492 ~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  568 (677)
                      .....+++.+|.++.        ..|++++|+.+|++++...  |. .+.+++.+|.++.++|+.++|...|++++.  .
T Consensus       168 ~~~~~a~~~LG~al~--------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~  237 (282)
T 4f3v_A          168 FLAGAAGVAHGVAAA--------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--T  237 (282)
T ss_dssp             HHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H
T ss_pred             ccHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c
Confidence            112458999999998        9999999999999998544  55 678999999999999999999999999999  8


Q ss_pred             ccchHHHHHHHHH
Q psy16607        569 NENAADVWYNISH  581 (677)
Q Consensus       569 ~p~~~~~~~~l~~  581 (677)
                      +|+ ..++..|..
T Consensus       238 ~P~-~~~~~aL~~  249 (282)
T 4f3v_A          238 HPE-PKVAAALKD  249 (282)
T ss_dssp             SCC-HHHHHHHHC
T ss_pred             CCc-HHHHHHHhC
Confidence            888 777766653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=3.1e-16  Score=139.40  Aligned_cols=115  Identities=11%  Similarity=0.079  Sum_probs=99.8

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      ..+++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+..|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            34566677888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++.+++++|.+|..+|++++|+.+|++++++.|++
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            88888888888888888888888888888888874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=2.2e-14  Score=136.19  Aligned_cols=186  Identities=13%  Similarity=0.037  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCC----C
Q psy16607        443 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND----Q  518 (677)
Q Consensus       443 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~----~  518 (677)
                      +|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++++.  .+  +.+++.+|.++.        . +    +
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~--~~a~~~lg~~y~--------~-~g~~~~   68 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD--GDALALLAQLKI--------R-NPQQAD   68 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC--HHHHHHHHHHTT--------S-STTSCC
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--HHHHHHHHHHHH--------c-CCCCCC
Confidence            466677777765  57777788888887788888888888887765  33  777888888775        4 5    7


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhcCCCC
Q psy16607        519 PEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       519 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p--~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                      +++|+.+|+++.+  +.++.+++++|.+|..    .+++++|+.+|+++++  ..+  .++.+++++|.+|.        
T Consensus        69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~~~~~a~~~Lg~~y~--------  136 (212)
T 3rjv_A           69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR--DSESDAAVDAQMLLGLIYA--------  136 (212)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--STTSHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--cCCCcchHHHHHHHHHHHH--------
Confidence            8888888888854  4677888888888877    7888888888888887  455  45888888888887        


Q ss_pred             cccchhhhHHhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChHH
Q psy16607        593 FSTHTSYLFIQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE-G-----HIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       593 ~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~  662 (677)
                                 .    .+++++|+.+|+++++. +.++.++++||.+|... |     ++++|+.+|+++.+..  +..+
T Consensus       137 -----------~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A  202 (212)
T 3rjv_A          137 -----------SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTG  202 (212)
T ss_dssp             -----------HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHH
T ss_pred             -----------cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHH
Confidence                       6    77899999999999887 66778889999988764 3     8999999999998875  4555


Q ss_pred             HHHHHHH
Q psy16607        663 HYNQAVI  669 (677)
Q Consensus       663 ~~~la~~  669 (677)
                      ...++.+
T Consensus       203 ~~~l~~l  209 (212)
T 3rjv_A          203 CEEFDRI  209 (212)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=2.5e-14  Score=135.75  Aligned_cols=175  Identities=6%  Similarity=-0.056  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC----ChHHHHHHHHH
Q psy16607        375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND----QPEVALLFYRR  450 (677)
Q Consensus       375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~  450 (677)
                      +|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            467777777765  57788888888888888888888888888764  467888888888877 6    78888888888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc----CCCHHHH
Q psy16607        451 LLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY----NDQPEVA  522 (677)
Q Consensus       451 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~----~~~~~~A  522 (677)
                      +.+  +.++.+++++|.+|..    .+++++|+.+|+++++..+.+..+.+++.+|.++.        .    .+++++|
T Consensus        79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~--------~g~g~~~d~~~A  148 (212)
T 3rjv_A           79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA--------SGVHGPEDDVKA  148 (212)
T ss_dssp             HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH--------HTSSSSCCHHHH
T ss_pred             HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH--------cCCCCCCCHHHH
Confidence            855  4578888888888877    77888888888888887773112778888888886        5    6788888


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhc-c-----CHHHHHHHHHHHHH
Q psy16607        523 LLFYRRLLQMGLYNAELFNNLALCCFYS-Q-----QYDMVVTCFERALS  565 (677)
Q Consensus       523 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~  565 (677)
                      +.+|+++++. +.++.+++.+|.+|... |     ++++|+.+|+++++
T Consensus       149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            8888888887 66677888888888764 2     78999999998887

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=1.3e-15  Score=135.57  Aligned_cols=125  Identities=14%  Similarity=0.069  Sum_probs=116.6

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      ..|++++..+|.+...++.+|.++...|++++|+..|++++.  .+|.++.+|+.+|.++.                   
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------   66 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQ-------------------   66 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHH-------------------
Confidence            467888999999999999999999999999999999999999  89999999999999999                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      ..|++++|+..|++++.++|+++.+++++|.++...|++++|+..|+++++++|+++........+
T Consensus        67 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  132 (148)
T 2vgx_A           67 AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV  132 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887654443333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.60  E-value=7.5e-17  Score=164.90  Aligned_cols=200  Identities=15%  Similarity=0.151  Sum_probs=143.9

Q ss_pred             cCChhHHHHHHHH----HHHhCcCCHHHHHHHHHHHH------------hCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607        404 LNNMPMSVKYYKL----ILKRDATCMEAIACIGVNHF------------YNDQPEVALLFYRRLLQMGLYNAELFNNLAL  467 (677)
Q Consensus       404 ~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  467 (677)
                      .+.+++|+..++.    ++.+.|..  ++...|....            .++++++|+..+++++...|....++..+|.
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~  155 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT  155 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence            4456667776666    66666654  3444443322            3344555555555555555555556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607        468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  547 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  547 (677)
                      ++...|++++|+..|++++.+.|.+  ..                    -..+       ......+....++.++|.++
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~--~~--------------------~~~~-------~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYE--SS--------------------FSNE-------EAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTC--CC--------------------CCSH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhcc--cc--------------------CChH-------HHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666555553  00                    0000       11111222368999999999


Q ss_pred             HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH
Q psy16607        548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL  627 (677)
Q Consensus       548 ~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~  627 (677)
                      ...|++++|+.+|++++.  .+|++..+++++|.++.                   .+|++++|+..|+++++++|++..
T Consensus       207 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHL-------------------AVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999  89999999999999999                   999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy16607        628 SQNNLAVLEAREGHIERA-STYLQAAAAS  655 (677)
Q Consensus       628 ~~~~la~~~~~~g~~~~A-~~~~~~al~~  655 (677)
                      ++..++.++...|++++| ...|++++..
T Consensus       266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          266 AKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 5677777754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.60  E-value=2.7e-16  Score=160.73  Aligned_cols=199  Identities=15%  Similarity=0.087  Sum_probs=125.0

Q ss_pred             cCCHHHHHHHHHH----HHccCCCHHHHHHHHHHHH------------HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        337 LGLIREAQQQFNS----ALNQFTDIEAFIRMIRVYI------------RLDQPIRAIDIGRNALDCYPNEVTIMTEMARI  400 (677)
Q Consensus       337 ~g~~~~A~~~~~~----al~~~p~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  400 (677)
                      .+.+++|+..++.    ++.+.|.. ++...|....            .++++++|+..+++++...|.+..++..+|.+
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~-ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~  156 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY-AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV  156 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT-TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc-ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence            4578888888888    77777742 3333333321            23344455555555555555555555555555


Q ss_pred             HHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607        401 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  480 (677)
Q Consensus       401 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  480 (677)
                      +...|++++|+..|++++.+.|.+...            ..+       ......+....++.++|.++...|++++|+.
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~~-------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  217 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSF------------SNE-------EAQKAQALRLASHLNLAMCHLKLQAFSAAIE  217 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCC------------CSH-------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccC------------ChH-------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555555555555555544110            000       0001111115677777777777777777777


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHH-HHH
Q psy16607        481 CFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV-VTC  559 (677)
Q Consensus       481 ~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~  559 (677)
                      +|+++++++|++  ..+++.+|.++.        ..|++++|+..|+++++++|++..++..++.++...|++++| ...
T Consensus       218 ~~~~al~~~p~~--~~a~~~lg~~~~--------~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~  287 (336)
T 1p5q_A          218 SCNKALELDSNN--EKGLSRRGEAHL--------AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL  287 (336)
T ss_dssp             HHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCc--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777776  777777777777        777777777777777777777777888888888888888777 446


Q ss_pred             HHHHHH
Q psy16607        560 FERALS  565 (677)
Q Consensus       560 ~~~al~  565 (677)
                      |++++.
T Consensus       288 ~~~~~~  293 (336)
T 1p5q_A          288 YANMFE  293 (336)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.59  E-value=3.9e-15  Score=131.53  Aligned_cols=128  Identities=13%  Similarity=0.048  Sum_probs=116.1

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++.  .+|++..+|..+|.++.                   
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------   63 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQ-------------------   63 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHH-------------------
Confidence            467778889999999999999999999999999999999999  89999999999999999                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      ..|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++........+...
T Consensus        64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988766655555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.59  E-value=8.7e-15  Score=145.55  Aligned_cols=198  Identities=14%  Similarity=0.044  Sum_probs=147.1

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  467 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  467 (677)
                      |.+...+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16607        468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  547 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  547 (677)
                      ++...|++++|+..|++++.++|++  ...+........           ...++...........+.+..+...++..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~  147 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQ--RLNFGDDIPSAL-----------RIAKKKRWNSIEERRIHQESELHSYLTRLI  147 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT--TCCCCSHHHHHH-----------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8888888888888888888888765  111111111110           111222233333345666777777776655


Q ss_pred             HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC-CCHHHHHHHHHHHHcc
Q psy16607        548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI-SDTRLAIQCLHLALSI  621 (677)
Q Consensus       548 ~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~-g~~~~A~~~~~~al~~  621 (677)
                        .|++++|++.++++++  .+|++......++.++.                   .. +.+++|...|.++.+.
T Consensus       148 --~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          148 --AAERERELEECQRNHE--GHEDDGHIRAQQACIEA-------------------KHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             --HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHH-------------------HHHHHHHHHHHHHHHSSCT
T ss_pred             --HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHH-------------------HHHHHHHHHHHHHHhhhcc
Confidence              6889999999999988  78888877777776665                   44 6788899999888763

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=1e-13  Score=120.24  Aligned_cols=134  Identities=20%  Similarity=0.334  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      .+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            35666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        438 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       438 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      .|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            777777777777777777777777777777777778888888777777776664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.58  E-value=5.5e-15  Score=146.97  Aligned_cols=199  Identities=12%  Similarity=0.091  Sum_probs=155.9

Q ss_pred             cCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHH
Q psy16607        422 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  501 (677)
Q Consensus       422 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  501 (677)
                      |.+...+..+|..+...|++++|+..|++++..+|.++.++.++|.++...|++++|+..++++++++|++  ..+++.+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999988  8899999


Q ss_pred             HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy16607        502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  581 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~  581 (677)
                      |.++.        ..|++++|+..|+++++.+|++...+.........   ..++.........  ..+.+..+...++.
T Consensus        79 g~~~~--------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~l~~  145 (281)
T 2c2l_A           79 GQCQL--------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEER--RIHQESELHSYLTR  145 (281)
T ss_dssp             HHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHT--CCCCCCHHHHHHHH
T ss_pred             HHHHH--------HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHH--HHhhhHHHHHHHHH
Confidence            99998        89999999999999998887653222211111111   1222222222222  45566666666655


Q ss_pred             HHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q psy16607        582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE-GHIERASTYLQAAAASS  656 (677)
Q Consensus       582 ~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~  656 (677)
                      +                     ..|++++|++.++++++.+|++......++.++... +.+++|...|.++.+..
T Consensus       146 l---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          146 L---------------------IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             H---------------------HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             H---------------------HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            4                     568999999999999999999988888888888776 77999999999887643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=1.4e-14  Score=128.86  Aligned_cols=115  Identities=10%  Similarity=-0.026  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      ..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++.+++.+|.++...|++++|+.+|++++++.|++
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            88888888888888888888888888888888775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.57  E-value=1.4e-13  Score=119.30  Aligned_cols=135  Identities=24%  Similarity=0.435  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHH
Q psy16607        496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV  575 (677)
Q Consensus       496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~  575 (677)
                      .+++.+|.++.        ..|++++|+..++++++..|.+...+..+|.++...|++++|+.++++++.  ..|.+...
T Consensus         2 ~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~   71 (136)
T 2fo7_A            2 EAWYNLGNAYY--------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEA   71 (136)
T ss_dssp             HHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             cHHHHHHHHHH--------HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHH
Confidence            45778888887        899999999999999999999999999999999999999999999999999  78999999


Q ss_pred             HHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        576 WYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       576 ~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      +..++.++.                   ..|++++|+..+++++...|.+..++..+|.++...|++++|...+++++..
T Consensus        72 ~~~l~~~~~-------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           72 WYNLGNAYY-------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHH-------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999998                   9999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy16607        656 SPYL  659 (677)
Q Consensus       656 ~p~~  659 (677)
                      +|++
T Consensus       133 ~~~~  136 (136)
T 2fo7_A          133 DPRS  136 (136)
T ss_dssp             STTC
T ss_pred             CCCC
Confidence            9863

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=6.2e-14  Score=120.78  Aligned_cols=119  Identities=14%  Similarity=-0.014  Sum_probs=112.7

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      |..+..+..+|..+...|++++|+..|++++.  .+|+++.+|.++|.++.                   ..|++++|+.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~-------------------~~~~~~~A~~   59 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALA-------------------KLMSFPEAIA   59 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH-------------------HhcCHHHHHH
Confidence            34567899999999999999999999999999  89999999999999999                   9999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHhc
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS------PYLYETHYNQAVISNLV  673 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~  673 (677)
                      .|+++++++|+++.+++.+|.++...|++++|+..|+++++++      |++..++..++.+...+
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999      99999999999887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=8.4e-15  Score=159.47  Aligned_cols=203  Identities=11%  Similarity=-0.011  Sum_probs=170.0

Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ----------YDMVVTCFERALSLALNENAADVWYNISHVAILN  508 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~  508 (677)
                      ...++|++.+++++..+|++..+|+..+.++...|+          +++++.++++++..+|++  ..+|+..+.++.  
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--y~aW~hR~w~l~--  118 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--YGTWHHRCWLLS--  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--
Confidence            344678999999999999999999999999999988          999999999999999999  999999999998  


Q ss_pred             hhcccccCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy16607        509 ALSTSVYND--QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-QYDMVVTCFERALSLALNENAADVWYNISHVAII  585 (677)
Q Consensus       509 ~l~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~  585 (677)
                            ..+  +++++++++.++++.+|.+..+|..++.++...| .+++++++++++++  .+|.+..+|..++.++..
T Consensus       119 ------~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          119 ------RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             ------TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHH
T ss_pred             ------HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHh
Confidence                  888  6799999999999999999999999999999999 99999999999999  899999999999999872


Q ss_pred             hhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH------------HHHHHHHHH
Q psy16607        586 TECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER------------ASTYLQAAA  653 (677)
Q Consensus       586 ~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al  653 (677)
                      ....+......     -...+.++++++++.+++..+|++..+|+.++.++...+++++            |+..|.+++
T Consensus       191 l~~~~~~~~~~-----~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i  265 (567)
T 1dce_A          191 LHPQPDSGPQG-----RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPL  265 (567)
T ss_dssp             HSCCCCSSSCC-----SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEE
T ss_pred             hcccccccccc-----cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccce
Confidence            11110000000     0012567889999999999999999999999998888887665            555566666


Q ss_pred             HhCCC
Q psy16607        654 ASSPY  658 (677)
Q Consensus       654 ~~~p~  658 (677)
                      .++|.
T Consensus       266 ~~~~~  270 (567)
T 1dce_A          266 TVGSR  270 (567)
T ss_dssp             CTTBT
T ss_pred             ecccc
Confidence            66654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.55  E-value=4.9e-13  Score=131.21  Aligned_cols=251  Identities=10%  Similarity=0.026  Sum_probs=184.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607        331 GKCYFSLGLIREAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       331 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      .+-.+..|+|..++.-..   +..|  .....+.+.++|..+|++....       . .+....+...++..+.  ++  
T Consensus        20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~--~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD--TK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT--TT--
T ss_pred             HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc--cc--
Confidence            455677788888877332   3333  3456666777788888776421       1 1112334444444332  22  


Q ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                       |+..+++.+...+....++..+|.++...|++++|++++.+.+..+|  .+.+++...+.++..+|+.+.|.+.++++.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             78888888877656667778889999999999999999999988886  788899999999999999999999999998


Q ss_pred             hhhcc----cchHHHHHHHHHHHHHhhhcccccCC--CHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHH
Q psy16607        487 SLALN----ENAADVWYNISHVAILNALSTSVYND--QPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       487 ~~~p~----~~~~~~~~~l~~~~~l~~l~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      +.+|+    +  ......++..+.      .+..|  ++.+|...|+++.+..|+  ....+++   ++..+|++++|..
T Consensus       164 ~~~~d~~~~~--d~~l~~Laea~v------~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~  232 (310)
T 3mv2_B          164 NAIEDTVSGD--NEMILNLAESYI------KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHSCHHHHHH--HHHHHHHHHHHH------HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHH
T ss_pred             hcCccccccc--hHHHHHHHHHHH------HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHH
Confidence            88872    1  344455544422      00334  899999999999888887  3334444   8999999999999


Q ss_pred             HHHHHHHHhh--------ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHH
Q psy16607        559 CFERALSLAL--------NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQ  629 (677)
Q Consensus       559 ~~~~al~~~~--------~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~  629 (677)
                      .++.+++...        +|+++.++.++..+..                   ..|+  +|.++++++.+.+|+++.+.
T Consensus       233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~-------------------~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLAL-------------------MQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH-------------------HTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHhcccccccccCCCCCHHHHHHHHHHHH-------------------HhCh--HHHHHHHHHHHhCCCChHHH
Confidence            9998776311        4889999999988887                   8887  89999999999999998654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.6e-13  Score=149.41  Aligned_cols=174  Identities=11%  Similarity=0.047  Sum_probs=162.4

Q ss_pred             HcCC-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCC----------HHHHHHHHHHHHHcCCCcHHH
Q psy16607        471 YSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ----------PEVALLFYRRLLQMGLYNAEL  539 (677)
Q Consensus       471 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~  539 (677)
                      ..|+ .++|+..+++++..+|++  ..+|+..+.++.        ..++          +++++..++++++.+|++..+
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~--~taW~~R~~~l~--------~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a  109 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDF--ATLWNCRREVLQ--------HLETEKSPEESAALVKAELGFLESCLRVNPKSYGT  109 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchh--HHHHHHHHHHHH--------hcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            3444 467899999999999998  999999999987        6666          999999999999999999999


Q ss_pred             HHHHHHHHHhcc--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC-CHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS-DTRLAIQCLH  616 (677)
Q Consensus       540 ~~~la~~~~~~g--~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g-~~~~A~~~~~  616 (677)
                      |+..+.++.+.+  ++++++.+++++++  .+|.+..+|...+.++.                   ..| .+++++++++
T Consensus       110 W~hR~w~l~~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~-------------------~l~~~~~~el~~~~  168 (567)
T 1dce_A          110 WHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAA-------------------QAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHH-------------------HcCCChHHHHHHHH
Confidence            999999999999  77999999999999  89999999999999998                   899 8999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        617 LALSIDSSHGLSQNNLAVLEARE--------------GHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       617 ~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      ++++.+|.+..+|+.++.++...              +.+++|++++.+++.++|++..+|+.++.++...|.
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            99999999999999999999885              668999999999999999999999999999987765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.54  E-value=3.5e-13  Score=132.28  Aligned_cols=248  Identities=12%  Similarity=-0.001  Sum_probs=193.3

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID  378 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~  378 (677)
                      .+..|+|..++.-.   .+..|.+.....+.+.+++..+|++...       ....|...+...++..+.  ++   |+.
T Consensus        23 ~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~~~~a~~~la~~~~--~~---a~~   87 (310)
T 3mv2_B           23 NYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSKLGKVLDLYVQFLD--TK---NIE   87 (310)
T ss_dssp             HHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSSTTHHHHHHHHHHHT--TT---CCH
T ss_pred             HHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC-------CCCCHHHHHHHHHHHHhc--cc---HHH
Confidence            34469999999843   3444444555557788999999998742       122234445555555542  22   889


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607        379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  456 (677)
Q Consensus       379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  456 (677)
                      .+++.+...+.....+..+|.++...|++++|++++.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.+.+|
T Consensus        88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B           88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            99998887666677778999999999999999999999999887  7899999999999999999999999999999988


Q ss_pred             C----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607        457 Y----NAELFNNL--ALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR  528 (677)
Q Consensus       457 ~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~  528 (677)
                      +    +..+...+  +++....|  ++.+|..+|+++....|+......+++   +++        .+|++++|...++.
T Consensus       168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~--------~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHL--------QQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH--------HHTCHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH--------HcCCHHHHHHHHHH
Confidence            3    22333344  55566667  999999999999888886201334444   566        88999999999998


Q ss_pred             HHHc----------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHH
Q psy16607        529 LLQM----------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVW  576 (677)
Q Consensus       529 al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~  576 (677)
                      +++.          +|+++.++.+++.+....|+  +|.+++.++..  ..|+++.+.
T Consensus       237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~  290 (310)
T 3mv2_B          237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIK  290 (310)
T ss_dssp             HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHH
T ss_pred             HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHH
Confidence            7765          58899999999999999998  89999999999  889988554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.54  E-value=1.4e-13  Score=118.72  Aligned_cols=125  Identities=15%  Similarity=0.107  Sum_probs=119.3

Q ss_pred             cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      .+|.+...+..+|.++...|++++|+..|++++.  ..|++..++..+|.++.                   ..|++++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A   65 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYS-------------------KLGNYAGA   65 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH-------------------HhhchHHH
Confidence            3456678899999999999999999999999999  78999999999999999                   99999999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCCC
Q psy16607        612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVIP  677 (677)
Q Consensus       612 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~ip  677 (677)
                      +..+++++...|+++.++..+|.++...|++++|+.+|+++++++|++..++..++.++..+|++|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-13  Score=118.96  Aligned_cols=122  Identities=13%  Similarity=0.055  Sum_probs=117.5

Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607        533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI  612 (677)
Q Consensus       533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~  612 (677)
                      .|.+...++.+|.++...|++++|+.+|++++.  .+|++..++..+|.++.                   ..|++++|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A~   70 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYT-------------------KLLEFQLAL   70 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHT-------------------TTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHH-------------------HhccHHHHH
Confidence            467788999999999999999999999999999  88999999999999998                   999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        613 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      .+++++++.+|.++.++..+|.++...|++++|+.+|+++++++|++..++..++.++...|+
T Consensus        71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999998885

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.53  E-value=5.4e-14  Score=124.10  Aligned_cols=115  Identities=13%  Similarity=-0.016  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        378 DIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       378 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      ..|++++..+|++...++.+|..+...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45667777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       458 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++.+++.+|.++...|++++|+.+|++++.+.|++
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            88888888888888888888888888888888766

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.53  E-value=7.7e-14  Score=128.21  Aligned_cols=134  Identities=16%  Similarity=0.137  Sum_probs=121.0

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHhhcCCC
Q psy16607        513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIITECSPF  591 (677)
Q Consensus       513 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~-~~~~~~~p~  591 (677)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++.  .+|++..++..+|.+ +.       
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~-------   90 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYY-------   90 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHH-------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH-------
Confidence            34789999999999999999999999999999999999999999999999999  889999999999999 77       


Q ss_pred             CcccchhhhHHhcCCCH--HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        592 SFSTHTSYLFIQGISDT--RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       592 ~~~~~~~~~~l~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                                  ..|++  ++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++......+.
T Consensus        91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A           91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence                        89998  99999999999999999999999999999999999999999999999999875544333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.52  E-value=4.6e-13  Score=126.96  Aligned_cols=145  Identities=15%  Similarity=0.098  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                      ...++.+|..+.        ..|++++|+..|++++  + .++.+++.+|.++...|++++|+.+|++++.  .+|++..
T Consensus         6 ~~~~~~~g~~~~--------~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~   72 (213)
T 1hh8_A            6 AISLWNEGVLAA--------DKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAV   72 (213)
T ss_dssp             HHHHHHHHHHHH--------HTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHHHHHHHHHH--------HhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchH
Confidence            445678888887        9999999999999985  3 3788999999999999999999999999999  8899999


Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh----------------HHHHHHHHHHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG----------------LSQNNLAVLEAR  638 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~  638 (677)
                      +++.+|.++.                   ..|++++|+..|+++++..|.+.                .+++++|.++..
T Consensus        73 ~~~~lg~~~~-------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           73 AYFQRGMLYY-------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             HHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence            9999999999                   99999999999999999888776                999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        639 EGHIERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       639 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      .|++++|+..|+++++++|++.......+....
T Consensus       134 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          134 KEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence            999999999999999999988766666555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=1.6e-13  Score=124.29  Aligned_cols=118  Identities=9%  Similarity=0.045  Sum_probs=110.2

Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607        533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI  612 (677)
Q Consensus       533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~  612 (677)
                      .+.++..++.+|.++...|++++|+.+|++++.  .+|++..+|+++|.++.                   ..|++++|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~g~~~~A~   65 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYS-------------------ASGQHEKAA   65 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHH-------------------HccCHHHHH
Confidence            455678899999999999999999999999999  89999999999999999                   999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        613 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       613 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      ..|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++|++..++++++....
T Consensus        66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997777666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.51  E-value=5.5e-13  Score=126.40  Aligned_cols=131  Identities=10%  Similarity=-0.075  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16607        326 WKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN  405 (677)
Q Consensus       326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  405 (677)
                      .++.+|.++...|++++|+..|++++  .++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence            34677777778888888888887774  4467777778888888888888888888887777777777777888888888


Q ss_pred             ChhHHHHHHHHHHHhCcCCH----------------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q psy16607        406 NMPMSVKYYKLILKRDATCM----------------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  458 (677)
Q Consensus       406 ~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  458 (677)
                      ++++|+..|+++++..|.+.                .+++.+|.++...|++++|+..|+++++..|.+
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            88888888888777666554                667777777777777777777777777776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.50  E-value=7.3e-13  Score=119.79  Aligned_cols=133  Identities=9%  Similarity=0.047  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      ...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..+++.+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhh
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFNNLAL--CCFYSQQYDMVVTCFERALSLA  489 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~  489 (677)
                      ..|++++|+.+|++++...|.+..++..++.  .+...|++++|+..+.++....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            9999999999999999999999888855444  4788899999999998876554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=5.6e-13  Score=114.71  Aligned_cols=114  Identities=9%  Similarity=-0.000  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      ....+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++++|.++.+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            44556666666667777777777777777777766667777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhhh------cccchHHHHHHHHHHH
Q psy16607        470 FYSQQYDMVVTCFERALSLA------LNENAADVWYNISHVA  505 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~  505 (677)
                      ...|++++|+..|+++++++      |.+  ..++..+..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~--~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSA--REIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTH--HHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhH--HHHHHHHHHHH
Confidence            77777777777777777766      554  55555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.49  E-value=5.1e-14  Score=132.12  Aligned_cols=161  Identities=11%  Similarity=0.041  Sum_probs=111.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH-----
Q psy16607        463 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA-----  537 (677)
Q Consensus       463 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-----  537 (677)
                      ...+......|+++++.+.++......+..  ...+..+|..+.        ..|++++|+..|++++...|.++     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~   77 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFF--------KKNEINEAIVKYKEALDFFIHTEEWDDQ   77 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHhcccccchh
Confidence            334444455555555555555444433333  555666666665        66666666666666666666554     


Q ss_pred             -----------HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC
Q psy16607        538 -----------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS  606 (677)
Q Consensus       538 -----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g  606 (677)
                                 .++.++|.++...|++++|+.++++++.  .+|++..+++.+|.++.                   ..|
T Consensus        78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~~  136 (198)
T 2fbn_A           78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANM-------------------YFG  136 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH-------------------Hcc
Confidence                       7899999999999999999999999999  78999999999999998                   999


Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q psy16607        607 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS-TYLQAAAA  654 (677)
Q Consensus       607 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  654 (677)
                      ++++|+..|+++++++|++..++..++.++...|+..++. ..|.+++.
T Consensus       137 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          137 FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998888877 44555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=3.2e-13  Score=124.06  Aligned_cols=125  Identities=12%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH-HHhCCCh--HHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN-HFYNDQP--EVA  444 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A  444 (677)
                      ...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++..+|.+..++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3456777777777777777777777777777777777777778777777777777777777777777 6677777  778


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        445 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       445 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      +..+++++..+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            888888877777777777778888888888888888888887777765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.48  E-value=1.5e-12  Score=130.38  Aligned_cols=170  Identities=14%  Similarity=0.044  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY  535 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~  535 (677)
                      ..+...+..+...|++++|+..+.+++...+..    .....++.+|.++.        ..|++++|+..+++++...+.
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~~~  147 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--------KKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH--------TSSCHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHhc
Confidence            344555666667777777777777766655443    11233455666666        778888888888888865443


Q ss_pred             c------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-hccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607        536 N------AELFNNLALCCFYSQQYDMVVTCFERALSLA-LNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQG  604 (677)
Q Consensus       536 ~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~  604 (677)
                      .      ..+++.+|.+|...|++++|+.+|++++... ..+++    ..+++++|.+|.                   .
T Consensus       148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-------------------~  208 (293)
T 2qfc_A          148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-------------------L  208 (293)
T ss_dssp             SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-------------------H
T ss_pred             CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-------------------H
Confidence            2      5688999999999999999999999999542 23332    268999999999                   9


Q ss_pred             CCCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q psy16607        605 ISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEAREGHIERA-STYLQAAAASS  656 (677)
Q Consensus       605 ~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  656 (677)
                      .|++++|+.++++++.+.+.      ...+++++|.++...|++++| ..+|++++.+.
T Consensus       209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            99999999999999987532      267899999999999999999 88899998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.47  E-value=1.7e-12  Score=110.80  Aligned_cols=121  Identities=26%  Similarity=0.344  Sum_probs=113.2

Q ss_pred             CCCc-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        533 GLYN-AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       533 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      +|.. ...++.+|.++...|++++|+..|++++.  ..|++..++..+|.++.                   ..|++++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A   62 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYY-------------------KQGDYDEA   62 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHH-------------------HhCCHHHH
Confidence            3444 77899999999999999999999999999  78999999999999999                   99999999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       612 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      +..+++++...|.++.++..+|.++...|++++|+..|+++++.+|++..++.+++.++...|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999998776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.47  E-value=3.3e-12  Score=127.81  Aligned_cols=169  Identities=12%  Similarity=0.064  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------
Q psy16607        391 VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCM------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------  458 (677)
Q Consensus       391 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------  458 (677)
                      ...+...+..+...|++++|++.+.++++..+...      ..++.+|.++...|++++|+..+++++...+..      
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34455566666777777777777777776655432      334567777788888888888888888754432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---hcccc--hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC
Q psy16607        459 AELFNNLALCCFYSQQYDMVVTCFERALSL---ALNEN--AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG  533 (677)
Q Consensus       459 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~--~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~  533 (677)
                      ..+++.+|.+|...|++++|+.+|++++..   .+++.  ...+++++|.++.        ..|++++|+.+++++++..
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~--------~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--------LDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH--------HHhhHHHHHHHHHHHHHHH
Confidence            568889999999999999999999999844   34331  1368999999998        9999999999999999765


Q ss_pred             CC------cHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHh
Q psy16607        534 LY------NAELFNNLALCCFYSQQYDMV-VTCFERALSLA  567 (677)
Q Consensus       534 p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  567 (677)
                      +.      ...+++++|.++...|++++| ..+|++++.+.
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            32      378899999999999999999 88899999743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.47  E-value=1.7e-12  Score=117.25  Aligned_cols=133  Identities=14%  Similarity=0.169  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD  574 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~  574 (677)
                      ...+..+|.++.        ..|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++.  .+|.+..
T Consensus        13 ~~~~~~~a~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~   82 (166)
T 1a17_A           13 AEELKTQANDYF--------KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIK   82 (166)
T ss_dssp             HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHH
Confidence            677889999998        999999999999999999999999999999999999999999999999999  8899999


Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLA--VLEAREGHIERASTYLQAA  652 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~a  652 (677)
                      ++..+|.++.                   ..|++++|+.+|+++++.+|.+..++..++  ..+...|++++|+..++++
T Consensus        83 ~~~~~a~~~~-------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           83 GYYRRAASNM-------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            9999999999                   999999999999999999999998885554  4488899999999999988


Q ss_pred             HHhC
Q psy16607        653 AASS  656 (677)
Q Consensus       653 l~~~  656 (677)
                      ..+.
T Consensus       144 ~~~~  147 (166)
T 1a17_A          144 RSVV  147 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.46  E-value=2e-13  Score=119.61  Aligned_cols=111  Identities=14%  Similarity=0.038  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc-------hH-----HHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-------AA-----DVWYNISHVAIITECSPFSFSTHTSYLFIQG  604 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~-------~~-----~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~  604 (677)
                      ...+..+|..++..|+|++|+..|+++++  .+|+       +.     .+|.++|.++.                   .
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~-------------------~   69 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALA-------------------G   69 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHH-------------------H
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHH-------------------H
Confidence            45678899999999999999999999999  6777       33     49999999999                   9


Q ss_pred             CCCHHHHHHHHHHHHcc-------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607        605 ISDTRLAIQCLHLALSI-------DSSHGLSQ----NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  668 (677)
Q Consensus       605 ~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  668 (677)
                      +|++++|+..|++++++       +|++..+|    +++|.++..+|++++|+..|+++++++|++....-.+..
T Consensus        70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~  144 (159)
T 2hr2_A           70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER  144 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            99999999999999999       99999999    999999999999999999999999999988755444433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.46  E-value=1.1e-13  Score=129.70  Aligned_cols=148  Identities=16%  Similarity=0.144  Sum_probs=84.9

Q ss_pred             HHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH----------------HHHH
Q psy16607        400 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA----------------ELFN  463 (677)
Q Consensus       400 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~  463 (677)
                      .....|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++                .++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            333444444444444443333333444455555555555555555555555555554444                5666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNL  543 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  543 (677)
                      ++|.++...|++++|+.++++++..+|.+  ..+++.+|.++.        ..|++++|+..|+++++.+|.+..++..+
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~p~~~~~~~~l  162 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANM--------YFGFLEEAKENLYKAASLNPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH--------HcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            66777777777777777777777766666  666677776666        66777777777777777777777777777


Q ss_pred             HHHHHhccCHHHHH
Q psy16607        544 ALCCFYSQQYDMVV  557 (677)
Q Consensus       544 a~~~~~~g~~~~A~  557 (677)
                      +.++...++..++.
T Consensus       163 ~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          163 ELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHH
Confidence            77776666666555

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.45  E-value=5.5e-13  Score=114.95  Aligned_cols=110  Identities=9%  Similarity=0.096  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL  615 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~  615 (677)
                      .+.++.++|..+++.|+|++|+.+|+++++  .+|+++.+|.++|.+|.                   .+|++++|+..|
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~-------------------~~~~~~~A~~~~   65 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYF-------------------EEKKFAECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHH-------------------HhhhHHHHHHHH
Confidence            356788999999999999999999999999  89999999999999999                   999999999999


Q ss_pred             HHHHccCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy16607        616 HLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  667 (677)
Q Consensus       616 ~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  667 (677)
                      +++++++|++.       .++.++|.++...|++++|+.+|++++...|+ ++....+.
T Consensus        66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            99999987653       57889999999999999999999999999885 45544444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.45  E-value=1.3e-12  Score=118.32  Aligned_cols=115  Identities=10%  Similarity=0.000  Sum_probs=76.9

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  467 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  467 (677)
                      +.+...+..+|.++...|++++|+.+|+++++++|.+..+++.+|.++...|++++|+..|+++++++|.++.+++.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            33455666666666667777777777777777666666667777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        468 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       468 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      ++...|++++|+.+|+++++++|++  ..+++..+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~  122 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNG--GSDAMKRGLE  122 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSS--CCHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCc--hHHHHHHHHH
Confidence            7777777777777777777777666  4444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.44  E-value=3.2e-12  Score=110.08  Aligned_cols=120  Identities=14%  Similarity=0.164  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        356 DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      ....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY  475 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  475 (677)
                      ...|++++|+..+++++...|.+..++..++.++...|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            7777777777777777777777777777777777776654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.44  E-value=3e-12  Score=128.14  Aligned_cols=166  Identities=13%  Similarity=0.031  Sum_probs=128.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc---
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN---  536 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~---  536 (677)
                      ..+..+...|++++|+..+++++...+....    ...+..+|.++.        ..+++++|+..|++++...+..   
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--------KKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT--------TSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHHhcccccH
Confidence            3455666777777777777777765554311    122334666665        7778888888888888754332   


Q ss_pred             ---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        537 ---AELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       537 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                         ..++.++|.+|...|++++|+.+|++++....     .+....+++++|.+|.                   .+|++
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-------------------~~~~y  212 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-------------------LDSRY  212 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-------------------HTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-------------------HHhHH
Confidence               34789999999999999999999999996421     2344568999999999                   99999


Q ss_pred             HHHHHHHHHHHccCCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q psy16607        609 RLAIQCLHLALSIDSSH------GLSQNNLAVLEAREG-HIERASTYLQAAAASS  656 (677)
Q Consensus       609 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  656 (677)
                      ++|+.++++++++.+..      +.+++++|.++..+| ++++|+.+|++++.+.
T Consensus       213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            99999999999875433      688999999999999 5799999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.44  E-value=2.7e-12  Score=111.09  Aligned_cols=116  Identities=11%  Similarity=0.053  Sum_probs=62.9

Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607        389 NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  468 (677)
Q Consensus       389 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  468 (677)
                      .+...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q psy16607        469 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  506 (677)
Q Consensus       469 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  506 (677)
                      +...|++++|+.+|++++..+|.+  ..++..++.++.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~  129 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSC--KEAADGYQRCMM  129 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGG--THHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHH
Confidence            555555555555555555555554  445555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.43  E-value=1.6e-12  Score=117.47  Aligned_cols=119  Identities=13%  Similarity=0.142  Sum_probs=107.8

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh----------------hccchHHHHHHHHHHHHHhhcCCCCcccchhh
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLA----------------LNENAADVWYNISHVAIITECSPFSFSTHTSY  599 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~  599 (677)
                      ....+..+|..++..|+|++|+..|.+++...                .+|....+|.++|.++.               
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------   74 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------   74 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            35678899999999999999999999999931                06778899999999999               


Q ss_pred             hHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhc
Q psy16607        600 LFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAVISNLV  673 (677)
Q Consensus       600 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  673 (677)
                          .+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...++.+...+
T Consensus        75 ----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           75 ----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             ----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             ----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence                999999999999999999999999999999999999999999999999999999998 6677777776543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=7.7e-13  Score=112.90  Aligned_cols=102  Identities=19%  Similarity=0.138  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      .++.+|..+...|++++|+..|++++.  .+|++..+|+.+|.++.                   ..|++++|+..|+++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~a   77 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQA-------------------ENEKDGLAIIALNHA   77 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHH
Confidence            478899999999999999999999999  89999999999999999                   999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      ++++|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus        78 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           78 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999999999998754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.43  E-value=5.6e-12  Score=126.12  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=123.8

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhCcCCHH------HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHH
Q psy16607        396 EMARIFEGLNNMPMSVKYYKLILKRDATCME------AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFN  463 (677)
Q Consensus       396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~  463 (677)
                      ..+..+...|++++|+..+++++...+....      .+..+|.++...+++++|+.++++++...+..      ..++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3455566667777777777777665554433      23346777777778888888888887754322      33688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhhc---cc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc--
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLAL---NE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN--  536 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~p---~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~--  536 (677)
                      ++|.+|...|++++|+.+|+++++...   .+  ....+++++|.++.        ..|++++|+.+++++++..+..  
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~--------~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--------LDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHcCc
Confidence            888888888999999988888885321   11  23668999999998        9999999999999999765433  


Q ss_pred             ----HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Q psy16607        537 ----AELFNNLALCCFYSQQ-YDMVVTCFERALSLA  567 (677)
Q Consensus       537 ----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  567 (677)
                          +.+++.+|.++...|+ +++|+.+|++++.+.
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                7899999999999995 799999999999853

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.42  E-value=1.6e-12  Score=111.95  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------HHHHHH
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------AELFNN  464 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~  464 (677)
                      .++..+|..+.+.|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+       ..++..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555555554433       235666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        465 LALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       465 la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      +|.++...|++++|+.+|++++...|+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            777777777777777777777776665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.42  E-value=2.5e-12  Score=112.26  Aligned_cols=120  Identities=16%  Similarity=0.110  Sum_probs=111.0

Q ss_pred             cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      .+|.++..++.+|.++...|++++|+.+|++++.  .+|++..++..+|.++.                   ..|++++|
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~-------------------~~~~~~~A   62 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYL-------------------KMQQPEQA   62 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHH-------------------HhcCHHHH
Confidence            4677899999999999999999999999999999  89999999999999999                   99999999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHh
Q psy16607        612 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY-----LYETHYNQAVISNL  672 (677)
Q Consensus       612 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~  672 (677)
                      +..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+     +..+...+..+...
T Consensus        63 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998     77777777766544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=4.1e-12  Score=107.18  Aligned_cols=115  Identities=10%  Similarity=0.050  Sum_probs=109.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL  615 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~  615 (677)
                      .+..++.+|.++...|++++|+..|++++.  ..|.+..++..+|.++.                   ..|++++|+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~   61 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYA-------------------KKGDYQKAYEDG   61 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHH-------------------hhccHHHHHHHH
Confidence            457789999999999999999999999999  88999999999999999                   999999999999


Q ss_pred             HHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       616 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      ++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+..
T Consensus        62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999988753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.41  E-value=2.9e-13  Score=144.36  Aligned_cols=151  Identities=13%  Similarity=0.207  Sum_probs=128.9

Q ss_pred             cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc---------------
Q psy16607        472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN---------------  536 (677)
Q Consensus       472 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~---------------  536 (677)
                      ++++++|+..|++++...|..  ...+..+|..+.        ..|++++|+..|+++++.+|.+               
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~--a~~~~~~G~~~~--------~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~  316 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQ--AAIVKEKGTVYF--------KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL  316 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHH--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHH--HHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence            344455555566666666665  888999999998        9999999999999999999988               


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      ..+|+++|.++.++|++++|+.+|++++.  .+|++..+|+++|.+|.                   .+|++++|+..|+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~-------------------~~g~~~~A~~~~~  375 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQL-------------------LMNEFESAKGDFE  375 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHH-------------------HccCHHHHHHHHH
Confidence            68999999999999999999999999999  89999999999999999                   9999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Q psy16607        617 LALSIDSSHGLSQNNLAVLEAREGHIERASTY-LQAAA  653 (677)
Q Consensus       617 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al  653 (677)
                      ++++++|++..++..++.++...|++++|... |++++
T Consensus       376 ~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988753 44433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=5.6e-12  Score=111.39  Aligned_cols=121  Identities=17%  Similarity=0.096  Sum_probs=113.9

Q ss_pred             cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCH
Q psy16607        532 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA---ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDT  608 (677)
Q Consensus       532 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~  608 (677)
                      ..|.+...++.+|..+...|++++|+.+|++++.  ..|++   ..++..+|.++.                   ..|++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~-------------------~~~~~   81 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHL-------------------KLEDY   81 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHH-------------------HTTCH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHH-------------------HHccH
Confidence            4577889999999999999999999999999999  78887   889999999999                   99999


Q ss_pred             HHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        609 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       609 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      ++|+..+++++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..++.+....
T Consensus        82 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A           82 DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999988876544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.40  E-value=2.3e-12  Score=112.86  Aligned_cols=101  Identities=10%  Similarity=-0.076  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-------CH-----HHHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q psy16607        392 TIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-------CM-----EAIACIGVNHFYNDQPEVALLFYRRLLQM-----  454 (677)
Q Consensus       392 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----  454 (677)
                      ..+..+|..+...|+|++|+..|+++++++|+       +.     .+|.++|.++..+|++++|+..|++++++     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34555666666666666666666666666665       33     37888888888888888888888888888     


Q ss_pred             --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        455 --GLYNAELF----NNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       455 --~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                        +|++..+|    +++|.++..+|++++|+.+|++++++.|++
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence              99999999    999999999999999999999999999887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.40  E-value=3.2e-13  Score=144.02  Aligned_cols=161  Identities=15%  Similarity=0.137  Sum_probs=97.4

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHH
Q psy16607        369 RLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFY  448 (677)
Q Consensus       369 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  448 (677)
                      .++++++|+..++.++...|.....+..+|..+...|++++|+..|++++++.|.+...           . .+.     
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~-~~~-----  308 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-----------S-EKE-----  308 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-----------C-HHH-----
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-----------C-hHH-----
Confidence            45667777777777777777777788888888888888888888888888877765210           0 000     


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q psy16607        449 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRR  528 (677)
Q Consensus       449 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~  528 (677)
                        .....+....+++++|.+|..+|++++|+.+|++++.++|++  ..+++++|.++.        ..|++++|+..|++
T Consensus       309 --~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~--------~~g~~~~A~~~~~~  376 (457)
T 1kt0_A          309 --SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQL--------LMNEFESAKGDFEK  376 (457)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHH--------HccCHHHHHHHHHH
Confidence              000111123455556666666666666666666666666655  556666666665        56666666666666


Q ss_pred             HHHcCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607        529 LLQMGLYNAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       529 al~~~p~~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      +++++|++..++..++.++...+++++|..
T Consensus       377 al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          377 VLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.39  E-value=2.7e-10  Score=122.08  Aligned_cols=322  Identities=12%  Similarity=0.006  Sum_probs=181.2

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcc---CC-CHHHHHHHHHHHH----HcCC
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG-LIREAQQQFNSALNQ---FT-DIEAFIRMIRVYI----RLDQ  372 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~----~~g~  372 (677)
                      .|+++.+..+|++++...| +...|. .........+ ..+.....|+.++..   ++ +...|......+.    ..++
T Consensus        27 ~~~~e~~~~iferal~~~p-s~~LW~-~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           27 SKDYRSLESLFGRCLKKSY-NLDLWM-LYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TTCHHHHHHHHHHHSTTCC-CHHHHH-HHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCCHHHHHHHHHHHhccCC-CHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence            3899999999999999886 444553 4444444444 345677888988874   34 7788888877654    3467


Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHH--------------HHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHh
Q psy16607        373 PIRAIDIGRNALDCYPNEVTIMTEMARIF--------------EGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFY  437 (677)
Q Consensus       373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~--------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~  437 (677)
                      .+.+..+|++++...+.+.+-+...-..+              ...+.+..|...|+.+....+. +...|..+...-..
T Consensus       105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            88999999999996443333221111111              1112333444444444433222 33344444333222


Q ss_pred             CC--C-----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH----
Q psy16607        438 ND--Q-----PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI----  506 (677)
Q Consensus       438 ~g--~-----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~----  506 (677)
                      .+  -     .+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+  ...|...+....    
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~--~~l~~~y~~~~e~~~~  261 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG--MFLSLYYGLVMDEEAV  261 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS--SHHHHHHHHHTTCTHH
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc--HHHHHHHHhhcchhHH
Confidence            11  0     234556777777777777777777777777777777777777777777 665  333332222100    


Q ss_pred             --------------------------Hhhhcc--cccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-CHHHHH
Q psy16607        507 --------------------------LNALST--SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-QYDMVV  557 (677)
Q Consensus       507 --------------------------l~~l~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~  557 (677)
                                                ++....  ..+.++.+.|...|.++ ...+.....|...+.+....+ +.+.|.
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar  340 (493)
T 2uy1_A          262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY  340 (493)
T ss_dssp             HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence                                      000000  00234566666666666 322234445555555554444 466666


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q psy16607        558 TCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  637 (677)
Q Consensus       558 ~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  637 (677)
                      .+|+.+++  ..|+.+..|...+....                   ..|+.+.|...|+++    +.....|........
T Consensus       341 ~ife~al~--~~~~~~~~~~~yid~e~-------------------~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~  395 (493)
T 2uy1_A          341 NIFSSGLL--KHPDSTLLKEEFFLFLL-------------------RIGDEENARALFKRL----EKTSRMWDSMIEYEF  395 (493)
T ss_dssp             HHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            66666666  44555555555555444                   666666666666665    234555666666566


Q ss_pred             HcCCHHHHHHHHHHHHH
Q psy16607        638 REGHIERASTYLQAAAA  654 (677)
Q Consensus       638 ~~g~~~~A~~~~~~al~  654 (677)
                      ..|+.+.+...+++++.
T Consensus       396 ~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          396 MVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHSCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            66666666666666654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.39  E-value=1.8e-11  Score=104.30  Aligned_cols=116  Identities=21%  Similarity=0.271  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  436 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  436 (677)
                      ..+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      ..|++++|+..+++++...|.++.++..++.++...
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            666666666666666666666666666666555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.38  E-value=1.1e-11  Score=108.10  Aligned_cols=106  Identities=20%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607        386 CYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL  465 (677)
Q Consensus       386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  465 (677)
                      ..|.++..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        466 ALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       466 a~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      |.++...|++++|+..|++++...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            88888888888888888888888777

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.38  E-value=2.7e-12  Score=109.46  Aligned_cols=98  Identities=11%  Similarity=0.120  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  473 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  473 (677)
                      ++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444555554455


Q ss_pred             CHHHHHHHHHHHHhhhcc
Q psy16607        474 QYDMVVTCFERALSLALN  491 (677)
Q Consensus       474 ~~~~A~~~~~~al~~~p~  491 (677)
                      ++++|+..|+++++.+|+
T Consensus       100 ~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHhCcC
Confidence            555555555554444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.37  E-value=2.2e-11  Score=102.63  Aligned_cols=111  Identities=9%  Similarity=-0.008  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      ..++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607        438 NDQPEVALLFYRRLLQMGLYNAELFNNLALC  468 (677)
Q Consensus       438 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  468 (677)
                      .|++++|+..++++++..|.++.++..++.+
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            5555555555555555555555555554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.36  E-value=5e-12  Score=114.11  Aligned_cols=114  Identities=16%  Similarity=0.079  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDC------------------YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILK  419 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  419 (677)
                      ..+...|..++..|++++|+..|++++..                  +|.+..++.++|.++..+|++++|+..+++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34445555555555555555555555554                  455556666777777777777777777777777


Q ss_pred             hCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHH
Q psy16607        420 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFY  471 (677)
Q Consensus       420 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~  471 (677)
                      ++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+...
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777766666 445555544443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.36  E-value=1.5e-11  Score=115.28  Aligned_cols=118  Identities=11%  Similarity=-0.076  Sum_probs=51.6

Q ss_pred             HcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCChh
Q psy16607        336 SLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC------YPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       336 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      ..|++++|...++......+ ...++..+|.++...|++++|+..+++++..      .+....++..+|.++...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            44555555553333322211 3445555555555555555555555555442      2222334444555555555555


Q ss_pred             HHHHHHHHHHHh---Cc----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        409 MSVKYYKLILKR---DA----TCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       409 ~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      +|+.++++++..   .+    ....++..+|.++...|++++|+.++++++.
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            555555544444   11    1123344444444444444444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.36  E-value=1.2e-11  Score=115.98  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=95.3

Q ss_pred             cCCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh----cc-chHHHHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQ------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL----NE-NAADVWYNISHVA  583 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~p-~~~~~~~~l~~~~  583 (677)
                      ..|++++|+..+++++.      ..+....++..+|.++...|++++|+.++++++....    ++ ....++.++|.++
T Consensus        38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  117 (203)
T 3gw4_A           38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA  117 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence            44444444444444443      2233456778889999999999999999999988432    22 3356788999999


Q ss_pred             HHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16607        584 IITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS--H----GLSQNNLAVLEAREGHIERASTYLQAAAASSP  657 (677)
Q Consensus       584 ~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  657 (677)
                      .                   ..|++++|+.++++++.+.+.  +    ..++..+|.++...|++++|+.++++++++..
T Consensus       118 ~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          118 L-------------------HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             H-------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             H-------------------HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            8                   999999999999999976332  2    24568999999999999999999999999765


Q ss_pred             CC
Q psy16607        658 YL  659 (677)
Q Consensus       658 ~~  659 (677)
                      ..
T Consensus       179 ~~  180 (203)
T 3gw4_A          179 EL  180 (203)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.35  E-value=1.4e-11  Score=106.22  Aligned_cols=116  Identities=19%  Similarity=0.144  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA---DVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC  614 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~---~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~  614 (677)
                      ..++.+|.++...|++++|+..|++++.  ..|++.   .+++.+|.++.                   ..|++++|+..
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~-------------------~~~~~~~A~~~   61 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYY-------------------ATRNFQLAEAQ   61 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHH-------------------HTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHH-------------------HhccHHHHHHH
Confidence            3467899999999999999999999999  778777   89999999999                   99999999999


Q ss_pred             HHHHHccCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        615 LHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       615 ~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      |++++...|++   +.+++.+|.++...|++++|+..|+++++..|+++.+...+..+....+
T Consensus        62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            99999999999   8889999999999999999999999999999999988877766655444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=1.3e-11  Score=106.26  Aligned_cols=119  Identities=10%  Similarity=0.077  Sum_probs=109.7

Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607        535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC  614 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~  614 (677)
                      ..+..++.+|.++...|++++|+.+|++++.  ..|.+..++..+|.++.                   ..|++++|+.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~-------------------~~~~~~~A~~~   60 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYF-------------------EKGDYNKCREL   60 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHH-------------------HhccHHHHHHH
Confidence            3467889999999999999999999999999  78999999999999999                   99999999999


Q ss_pred             HHHHHccCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        615 LHLALSIDSSH-------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       615 ~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      +++++...|.+       ..++..+|.++...|++++|+.+|+++++..| ++..+..++.+...++.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            99999998876       88999999999999999999999999999999 68889999888876543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.32  E-value=5.9e-12  Score=105.14  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHH
Q psy16607        533 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAI  612 (677)
Q Consensus       533 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~  612 (677)
                      +|+++..+..+|.++...|++++|+.+|++++.  ..|.+..++..+|.++.                   ..|++++|+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~-------------------~~~~~~~A~   60 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALY-------------------NLERYEEAV   60 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHH-------------------HccCHHHHH
Confidence            678888999999999999999999999999999  88999999999999999                   999999999


Q ss_pred             HHHHHHHccCCC--ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCh
Q psy16607        613 QCLHLALSIDSS--HGLSQNNLAVLEARE-GHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       613 ~~~~~al~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~  660 (677)
                      ..|+++++..|.  +..++..+|.++... |++++|+.++++++...|.++
T Consensus        61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            999999999999  999999999999999 999999999999999999764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.32  E-value=3.4e-12  Score=130.26  Aligned_cols=138  Identities=12%  Similarity=0.071  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHhccCHHHHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA-----------------ELFNNLALCCFYSQQYDMVV  557 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~  557 (677)
                      ...+..+|..+.        ..|++++|+..|++++...|.+.                 .+++++|.++...|++++|+
T Consensus       179 a~~~~~~g~~~~--------~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          179 ADRRKMDGNSLF--------KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHTC--------SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            667788888887        99999999999999999999887                 48999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH-H
Q psy16607        558 TCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-E  636 (677)
Q Consensus       558 ~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~  636 (677)
                      .+|++++.  .+|++..+|+++|.+|.                   .+|++++|+..|+++++++|++..++..++.+ .
T Consensus       251 ~~~~~al~--~~p~~~~a~~~lg~a~~-------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          251 GHCNIVLT--EEEKNPKALFRRGKAKA-------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHH--HCTTCHHHHHHHHHHHH-------------------TTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999  89999999999999999                   99999999999999999999999999999998 4


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        637 AREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       637 ~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                      ...+..+++...|.+++...|+++.
T Consensus       310 ~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            5567889999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.31  E-value=4.8e-12  Score=110.53  Aligned_cols=100  Identities=16%  Similarity=0.078  Sum_probs=78.5

Q ss_pred             hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCC----------HHHHHHHHHHH
Q psy16607        549 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISD----------TRLAIQCLHLA  618 (677)
Q Consensus       549 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~----------~~~A~~~~~~a  618 (677)
                      +.++|++|+..++++++  .+|+++.+|+++|.++.                   ..++          +++|+..|+++
T Consensus        14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~-------------------~l~~~~~g~~al~~~~eAi~~le~A   72 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLL-------------------ELSQFHSISDAKQMIQEAITKFEEA   72 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH-------------------HhcccchhhhhHhHHHHHHHHHHHH
Confidence            34455666666666666  56666666666666555                   4433          57999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREG-----------HIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      ++++|++.++|+++|.+|..+|           ++++|+.+|++|++++|++...+..+..+
T Consensus        73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999885           89999999999999999998877766544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.31  E-value=3.7e-11  Score=103.46  Aligned_cols=105  Identities=10%  Similarity=0.069  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHH
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEV---TIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGV  433 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  433 (677)
                      ++.+|.++...|++++|+..|+++++.+|++.   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            34445555555555555555555555555444   455555555555555555555555555555554   445555555


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCCCHHHHHH
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNN  464 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  464 (677)
                      ++...|++++|+..|++++...|+++.+...
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            5555555555555555555555555444333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5.8e-11  Score=104.77  Aligned_cols=115  Identities=11%  Similarity=-0.003  Sum_probs=67.9

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN  464 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  464 (677)
                      |.+...+..+|..+...|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++...|.++.+++.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4455555555555555666666666666665555554   5555566666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        465 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       465 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      +|.++...|++++|+.+|++++..+|++  ..++..++.+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~  142 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHH
Confidence            6666666666666666666666666655  5555444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.30  E-value=1.3e-11  Score=102.95  Aligned_cols=106  Identities=11%  Similarity=-0.017  Sum_probs=72.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CHHHHHH
Q psy16607        387 YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY--NAELFNN  464 (677)
Q Consensus       387 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~  464 (677)
                      +|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            45556666666667767777777777777777766666666667777777777777777777777776666  6667777


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHhhhccc
Q psy16607        465 LALCCFYS-QQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       465 la~~~~~~-g~~~~A~~~~~~al~~~p~~  492 (677)
                      +|.++... |++++|+.++++++...|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            77777777 77777777777776666653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.29  E-value=8.8e-12  Score=105.60  Aligned_cols=103  Identities=14%  Similarity=0.077  Sum_probs=77.5

Q ss_pred             ccCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607        550 SQQYDMVVTCFERALSLAL---NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHG  626 (677)
Q Consensus       550 ~g~~~~A~~~~~~al~~~~---~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~  626 (677)
                      .|++++|+.+|+++++  .   +|++..++..+|.++.                   ..|++++|+..|+++++.+|+++
T Consensus         3 ~g~~~~A~~~~~~al~--~~~~~p~~~~~~~~lg~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~   61 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIA--SGLQGKDLAECYLGLGSTFR-------------------TLGEYRKAEAVLANGVKQFPNHQ   61 (117)
T ss_dssp             ----CCCHHHHHHHHS--SCCCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCcHHHHHHHHHHHHH--cCCCCccHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCch
Confidence            5677778888888877  5   4777788888888887                   88888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      .+++.+|.++...|++++|+..|+++++..|+++........+....
T Consensus        62 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~  108 (117)
T 3k9i_A           62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA  108 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888877665554444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.29  E-value=5.1e-12  Score=110.33  Aligned_cols=111  Identities=13%  Similarity=0.045  Sum_probs=96.4

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY----------DMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      +.+.+++|+..++++++.+|+++++|+++|.++...+++          ++|+..|+++++  ++|++..+|+++|.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence            457799999999999999999999999999999999875          599999999999  99999999999999998


Q ss_pred             HhhcCCCCcccchhhhHHhcC-----------CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        585 ITECSPFSFSTHTSYLFIQGI-----------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA  653 (677)
Q Consensus       585 ~~~~~p~~~~~~~~~~~l~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  653 (677)
                                         .+           |++++|+.+|+++++++|++.                     .|.+++
T Consensus        92 -------------------~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------------------~y~~al  131 (158)
T 1zu2_A           92 -------------------SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------------------HYLKSL  131 (158)
T ss_dssp             -------------------HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------------HHHHHH
T ss_pred             -------------------HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------------------HHHHHH
Confidence                               65           589999999999999999874                     445556


Q ss_pred             HhCCCChHHHHHHH
Q psy16607        654 ASSPYLYETHYNQA  667 (677)
Q Consensus       654 ~~~p~~~~~~~~la  667 (677)
                      ++.+..++.++.+.
T Consensus       132 ~~~~ka~el~~~~~  145 (158)
T 1zu2_A          132 EMTAKAPQLHAEAY  145 (158)
T ss_dssp             HHHHTHHHHHHHHH
T ss_pred             HHHHhCHhccCccc
Confidence            66666666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=4.8e-10  Score=118.70  Aligned_cols=165  Identities=11%  Similarity=0.026  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCHHH
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG------LYNAEL  461 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~  461 (677)
                      +..+|.+|...|++++|++++.+++...+..      ..+...++.++...|++++|+.++++++...      +....+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            4556666666666666666666665554332      1233455666666677777777777666532      223456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc----cchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC---
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL---  534 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p---  534 (677)
                      +..+|.++...|+|++|+.++++++.....    .....++..++.++.        ..|++++|...+++++...+   
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH--------KLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH--------HhCcHHHHHHHHHHHHHHhhcCC
Confidence            677777777777777777777776654221    123566777777776        77888888888777775422   


Q ss_pred             Cc----HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607        535 YN----AELFNNLALCCFYSQQYDMVVTCFERALSL  566 (677)
Q Consensus       535 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  566 (677)
                      ..    ...+..+|.++...++|++|..+|.+++..
T Consensus       210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            11    345677888888999999999999998874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.27  E-value=7.7e-12  Score=127.63  Aligned_cols=153  Identities=12%  Similarity=0.009  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16607        324 WWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG  403 (677)
Q Consensus       324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  403 (677)
                      ...+..+|..++..|++++|+..|++++...|+...       +...+++.++...+.         ..++.++|.++..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~  242 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLIK  242 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHHH
Confidence            334468888888888888888888888888773321       122333444433221         2478888999999


Q ss_pred             cCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy16607        404 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC-CFYSQQYDMVVTCF  482 (677)
Q Consensus       404 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~  482 (677)
                      +|++++|+.+|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+++...|
T Consensus       243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~  322 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY  322 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998899999999999999999999999999999999888888888888 44566778888888


Q ss_pred             HHHHhhhccc
Q psy16607        483 ERALSLALNE  492 (677)
Q Consensus       483 ~~al~~~p~~  492 (677)
                      .+++...|.+
T Consensus       323 ~~~l~~~p~~  332 (338)
T 2if4_A          323 KGIFKGKDEG  332 (338)
T ss_dssp             ----------
T ss_pred             HHhhCCCCCC
Confidence            8888888765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.26  E-value=1.7e-12  Score=139.02  Aligned_cols=134  Identities=8%  Similarity=0.077  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN  438 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  438 (677)
                      .+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..+++.+|.+|...
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45566777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhhccc
Q psy16607        439 DQPEVALLFYRRLLQMGLYNAELFNNLALC--CFYSQQYDMVVTCFE-----------RALSLALNE  492 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~  492 (677)
                      |++++|++.|+++++.+|++..++..++.+  +...|++++|+..++           +++...|+.
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999988888888888  888899999999999           777666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.26  E-value=2.4e-09  Score=114.60  Aligned_cols=319  Identities=9%  Similarity=-0.029  Sum_probs=201.8

Q ss_pred             cc-CHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCC-hHHHHHH
Q psy16607        302 EN-DVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQ-PIRAIDI  379 (677)
Q Consensus       302 ~g-~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~-~~~A~~~  379 (677)
                      .| ++..|..+|++++...|.                |+++.+..+|++++...|+.+.|........+.+. .+.....
T Consensus         7 ~~~~i~~aR~vyer~l~~~P~----------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~   70 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLYMS----------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV   70 (493)
T ss_dssp             -----CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred             cCcchHHHHHHHHHHHHHCCC----------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence            46 488899999999988864                99999999999999988999999888888777763 4556778


Q ss_pred             HHHHHHc---CCCcHHHHHHHHHHHH----HcCChhHHHHHHHHHHHhCcCCHHHHHH-HHHHH-------------HhC
Q psy16607        380 GRNALDC---YPNEVTIMTEMARIFE----GLNNMPMSVKYYKLILKRDATCMEAIAC-IGVNH-------------FYN  438 (677)
Q Consensus       380 ~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~-------------~~~  438 (677)
                      |+.++..   +|.+..+|......+.    ..++.+.+...|++++...+.+..-+.. ....-             ...
T Consensus        71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~  150 (493)
T 2uy1_A           71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL  150 (493)
T ss_dssp             HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence            8888874   6778889988887654    3467889999999999964434332222 21111             111


Q ss_pred             CChHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhh
Q psy16607        439 DQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYS--QQ-----YDMVVTCFERALSLALNENAADVWYNISHVAILNAL  510 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l  510 (677)
                      ..+..|...|+.+....+. +...|......-...  |-     .+.....|++++...|..  +..|...+..+.    
T Consensus       151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~--~~lW~~ya~~~~----  224 (493)
T 2uy1_A          151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA--EEVYFFYSEYLI----  224 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHH----
Confidence            2344455556555544332 344565544432211  11     345678999999999998  999999999888    


Q ss_pred             cccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-----------hccchHHHHHHH
Q psy16607        511 STSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----------LNENAADVWYNI  579 (677)
Q Consensus       511 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------~~p~~~~~~~~l  579 (677)
                          ..|+.++|...|++++.. |.+...|...+... ..+   +.   +++..+..           ..+....+|...
T Consensus       225 ----~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          225 ----GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             ----HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             ----HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence                889999999999999999 99877776554431 111   11   11111100           011223455555


Q ss_pred             HHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC
Q psy16607        580 SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSPY  658 (677)
Q Consensus       580 ~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~  658 (677)
                      +....                   +.++.+.|...|+++ ...+....+|...+.+....| +.+.|..+|+.+++..|+
T Consensus       293 ~~~~~-------------------r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          293 LNYVL-------------------KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             HHHHH-------------------HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             HHHHH-------------------HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence            55554                   555666666666666 322223445555555555444 466666666666666666


Q ss_pred             ChHHHHHHHHHHHhcC
Q psy16607        659 LYETHYNQAVISNLVS  674 (677)
Q Consensus       659 ~~~~~~~la~~~~~~G  674 (677)
                      .++.+...+......|
T Consensus       353 ~~~~~~~yid~e~~~~  368 (493)
T 2uy1_A          353 STLLKEEFFLFLLRIG  368 (493)
T ss_dssp             CHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            6655554444444444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.26  E-value=7e-11  Score=101.55  Aligned_cols=113  Identities=13%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-------HHHHHH
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC-------MEAIAC  430 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~  430 (677)
                      ..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++...|.+       ..+++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            4556666666666667777777766666666666666667777767777777777777766666655       666666


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16607        431 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  471 (677)
Q Consensus       431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  471 (677)
                      +|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            66666666666666666666666665 45555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.25  E-value=8.8e-12  Score=133.38  Aligned_cols=126  Identities=14%  Similarity=0.180  Sum_probs=115.3

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      +..|++++|+..|+++++.+|.+..++.++|.++..+|++++|+..|+++++  .+|++..+++++|.+|.         
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~---------   85 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM---------   85 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHH---------
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH---------
Confidence            3899999999999999999999999999999999999999999999999999  89999999999999999         


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCCh
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL--EAREGHIERASTYLQ-----------AAAASSPYLY  660 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~  660 (677)
                                .+|++++|+..|+++++++|++..++..++.+  +...|++++|++.++           +++.++|+..
T Consensus        86 ----------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           86 ----------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             ----------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             ----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence                      99999999999999999999999999999998  889999999999999           8888877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.6e-10  Score=122.39  Aligned_cols=219  Identities=13%  Similarity=0.047  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      .....|..+...|++++|++.|.++++..|........       .+.........          ..++..+|.+|...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~----------~~al~~l~~~y~~~   68 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-------ASVDDKRRNEQ----------ETSILELGQLYVTM   68 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-------SSBCSHHHHHH----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-------HHHHHHHhhhH----------HHHHHHHHHHHHHC
Confidence            34455666666667777777776666666543221110       01111111111          12456778888888


Q ss_pred             CCHHHHHHHHHHHHhhhcccc----hHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHc------CCCcHHHHHH
Q psy16607        473 QQYDMVVTCFERALSLALNEN----AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQM------GLYNAELFNN  542 (677)
Q Consensus       473 g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~  542 (677)
                      |++++|++++.+++...+...    ...+...++.++.        ..|++++|+.++++++..      .+....++..
T Consensus        69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (434)
T 4b4t_Q           69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ--------VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK  140 (434)
T ss_dssp             TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS--------CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            888888888888777655431    1223445555554        678889999998888753      2334678899


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        543 LALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       543 la~~~~~~g~~~~A~~~~~~al~~~~----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      +|.++...|+|++|+.++++++....    .+....++..++.+|.                   ..|++++|...++++
T Consensus       141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-------------------KLRNLAKSKASLTAA  201 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-------------------HhCcHHHHHHHHHHH
Confidence            99999999999999999999987532    2345678999999998                   999999999999999


Q ss_pred             HccCCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16607        619 LSIDSS---H----GLSQNNLAVLEAREGHIERASTYLQAAAAS  655 (677)
Q Consensus       619 l~~~p~---~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  655 (677)
                      +...+.   .    ...+..+|.++...|++++|..+|.++++.
T Consensus       202 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          202 RTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            876432   2    356778899999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.24  E-value=7.2e-11  Score=121.73  Aligned_cols=137  Identities=9%  Similarity=0.013  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        327 KVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       327 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      +..+|..++..|++++|+..|+++++..+...                 ............|.+..++.++|.++.++|+
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  288 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLKMSD  288 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            46778888888888888888888776432110                 0111233344666677788888888888888


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  480 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  480 (677)
                      +++|+.+++++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus       289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888877777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.21  E-value=1.2e-10  Score=120.07  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ----------------MGLYNAELFNNLALCCFYSQQYDMVVT  558 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~  558 (677)
                      ...+..+|..+.        ..|++++|+..|+++++                .+|.+..++.++|.++.++|++++|+.
T Consensus       223 a~~~~~~g~~~~--------~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          223 SEDLKNIGNTFF--------KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            566788899988        99999999999999998                344444444445555555555555555


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Q psy16607        559 CFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  638 (677)
Q Consensus       559 ~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  638 (677)
                      +++++++  .+|++..+++.+|.+|.                   .+|++++|+..|+++++++|++..++..++.++..
T Consensus       295 ~~~~al~--~~p~~~~a~~~lg~~~~-------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          295 SCLEALE--IDPSNTKALYRRAQGWQ-------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHHT--TCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHH--hCchhHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5555444  44444444444444444                   44455555555555544444444444444444444


Q ss_pred             cCCHHHH
Q psy16607        639 EGHIERA  645 (677)
Q Consensus       639 ~g~~~~A  645 (677)
                      .++++++
T Consensus       354 ~~~~~~a  360 (370)
T 1ihg_A          354 IKAQKDK  360 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.21  E-value=1.7e-11  Score=103.82  Aligned_cols=90  Identities=7%  Similarity=-0.019  Sum_probs=40.6

Q ss_pred             CChHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607        371 DQPIRAIDIGRNALDC---YPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       371 g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      |++++|+..|+++++.   +|++..++..+|.++...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444444444444   2444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHcCCCCHH
Q psy16607        448 YRRLLQMGLYNAE  460 (677)
Q Consensus       448 ~~~al~~~~~~~~  460 (677)
                      +++++...|.++.
T Consensus        84 ~~~al~~~p~~~~   96 (117)
T 3k9i_A           84 LLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHCCCHH
T ss_pred             HHHHHHhCCCcHH
Confidence            4444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.20  E-value=1.5e-10  Score=103.55  Aligned_cols=132  Identities=14%  Similarity=0.043  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------HH
Q psy16607        359 AFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------ME  426 (677)
Q Consensus       359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  426 (677)
                      ++..+|.++...|++++|+..++++++..+..      ..++..+|.++...|++++|+.++++++...+..      ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            34444444444444444444444444432211      1244555555555555555555555555543321      44


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q psy16607        427 AIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  490 (677)
Q Consensus       427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  490 (677)
                      ++..+|.++...|++++|+.++++++...+      ....++..+|.++...|++++|+.++++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            556666666666666666666666665422      1235677788888888888888888888877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.17  E-value=2.3e-10  Score=102.34  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLAL  568 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  568 (677)
                      ..++..+|.++.        ..|++++|+..++++++..+..      ..++..+|.++...|++++|+.++++++....
T Consensus         9 ~~~~~~l~~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            9 GRAFGNLGNTHY--------LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            667889999998        8999999999999999765533      25889999999999999999999999998542


Q ss_pred             ccc----hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHH
Q psy16607        569 NEN----AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEAR  638 (677)
Q Consensus       569 ~p~----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~  638 (677)
                      ...    ...++..+|.++.                   ..|++++|+.++++++...+.      ...++..+|.++..
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYT-------------------LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence            221    2567889999998                   999999999999999976432      24678899999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q psy16607        639 EGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       639 ~g~~~~A~~~~~~al~~~p~~  659 (677)
                      .|++++|+.++++++++....
T Consensus       142 ~g~~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A          142 LGNHDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999876543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.07  E-value=1.2e-09  Score=87.30  Aligned_cols=86  Identities=24%  Similarity=0.301  Sum_probs=81.8

Q ss_pred             cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy16607        570 ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL  649 (677)
Q Consensus       570 p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  649 (677)
                      +....+++.+|.++.                   ..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|
T Consensus         6 ~~~~~~~~~la~~~~-------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   66 (91)
T 1na3_A            6 GNSAEAWYNLGNAYY-------------------KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY   66 (91)
T ss_dssp             CHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            356788999999998                   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        650 QAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       650 ~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      +++++++|++..++.++|.++...|
T Consensus        67 ~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           67 QKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999998876

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.02  E-value=2.2e-09  Score=89.27  Aligned_cols=86  Identities=12%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        572 AADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA  651 (677)
Q Consensus       572 ~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  651 (677)
                      ....+..+|.++.                   ..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|++
T Consensus         3 ~~~~~~~~g~~~~-------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   63 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-------------------KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ   63 (111)
T ss_dssp             HHHHHHHHHHHHH-------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4577888999988                   999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCC------hHHHHHHHHHHHhcCCC
Q psy16607        652 AAASSPYL------YETHYNQAVISNLVSVI  676 (677)
Q Consensus       652 al~~~p~~------~~~~~~la~~~~~~G~i  676 (677)
                      +++++|++      ..+++.+|.++..+|..
T Consensus        64 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           64 GLRYTSTAEHVAIRSKLQYRLELAQGAVGSV   94 (111)
T ss_dssp             HHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999      89999999999988864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.00  E-value=2.2e-09  Score=90.22  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607        409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  488 (677)
Q Consensus       409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  488 (677)
                      +|+..|+++++.+|.+..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46666777777777777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             hccc
Q psy16607        489 ALNE  492 (677)
Q Consensus       489 ~p~~  492 (677)
                      .|..
T Consensus        83 ~~~~   86 (115)
T 2kat_A           83 AQSR   86 (115)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.99  E-value=3e-09  Score=89.43  Aligned_cols=99  Identities=12%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHH
Q psy16607        555 MVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  634 (677)
Q Consensus       555 ~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  634 (677)
                      +|+..|++++.  .+|++..+++.+|.++.                   ..|++++|+..|++++..+|.+..+++.+|.
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   61 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYA-------------------EHEQFDAALPHLRAALDFDPTYSVAWKWLGK   61 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHH-------------------HccCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            57889999998  88999999999999999                   9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcC
Q psy16607        635 LEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLVS  674 (677)
Q Consensus       635 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~G  674 (677)
                      ++...|++++|+..|++++++.|.+  ......+...+..+|
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            9999999999999999999998854  455555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.98  E-value=2.8e-10  Score=94.79  Aligned_cols=95  Identities=16%  Similarity=0.187  Sum_probs=88.1

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL  615 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~  615 (677)
                      ++..+..+|.++...|++++|+..|++++.  .+|+++.++.++|.++.                   ..|++++|+..|
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~   61 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALI-------------------KLGEYTQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-------------------HhcCHHHHHHHH
Confidence            467889999999999999999999999999  89999999999999999                   999999999999


Q ss_pred             HHHHccCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        616 HLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQA  651 (677)
Q Consensus       616 ~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~  651 (677)
                      +++++++|++      ..+++.+|.++...|++++|+..+++
T Consensus        62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999999998      88999999999999988887766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.94  E-value=7.9e-09  Score=82.31  Aligned_cols=83  Identities=18%  Similarity=0.244  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      +..++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34455555666666666666666666666666655555666666666666666666666666666666666665555555


Q ss_pred             HHc
Q psy16607        470 FYS  472 (677)
Q Consensus       470 ~~~  472 (677)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.93  E-value=5.3e-09  Score=85.40  Aligned_cols=90  Identities=8%  Similarity=-0.039  Sum_probs=77.7

Q ss_pred             hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy16607        568 LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  647 (677)
Q Consensus       568 ~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  647 (677)
                      .+|+++.+|+.+|.++.                   ..|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus         2 ~~p~~~~~~~~lg~~~~-------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~   62 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-------------------KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID   62 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCccCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            46899999999999999                   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCC--hHHHHHHHHHHHhcCCC
Q psy16607        648 YLQAAAASSPYL--YETHYNQAVISNLVSVI  676 (677)
Q Consensus       648 ~~~~al~~~p~~--~~~~~~la~~~~~~G~i  676 (677)
                      .|++++++.|..  ......+..++...|..
T Consensus        63 ~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~   93 (100)
T 3ma5_A           63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL   93 (100)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhcCCchhHHHHHHHHHHHcccc
Confidence            999999998754  45566666666665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=3.1e-08  Score=86.22  Aligned_cols=121  Identities=12%  Similarity=-0.014  Sum_probs=105.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH  596 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~  596 (677)
                      +++++|+.+|+++.+.......    +|.+|...+.+++|+.+|+++.+    ..++.+.+++|.+|.            
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~----~g~~~a~~~Lg~~y~------------   68 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACE----LNSGNGCRFLGDFYE------------   68 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH------------
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHH------------
Confidence            5789999999999988754444    99999999999999999999987    378899999999997            


Q ss_pred             hhhhHHhc----CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy16607        597 TSYLFIQG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAV  668 (677)
Q Consensus       597 ~~~~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~  668 (677)
                             .    .+++++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+.  .++.+..+|+.
T Consensus        69 -------~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A           69 -------NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             -------HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             -------cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence                   7    89999999999999986  679999999999999    89999999999999987  45666666653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.81  E-value=2.9e-08  Score=80.92  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=44.0

Q ss_pred             CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        421 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       421 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            45566666666666666666666666666666666666666666666666666666666666666665544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.80  E-value=7e-09  Score=84.35  Aligned_cols=91  Identities=9%  Similarity=0.054  Sum_probs=74.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENAAD-VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~-~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      +.+|.++...|++++|+..|+++++  .+|++.. +++.+|.++.                   ..|++++|+..|++++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~-------------------~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYR-------------------KLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHH
Confidence            4577888888888888888888888  7888888 8888888888                   8888888888888888


Q ss_pred             ccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        620 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       620 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                      +++|++..++.+        +.+.+++..|+++...+|++.
T Consensus        63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            888888877644        567778888888877777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.75  E-value=1.8e-08  Score=81.89  Aligned_cols=88  Identities=9%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhCcCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q psy16607        396 EMARIFEGLNNMPMSVKYYKLILKRDATCME-AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  474 (677)
Q Consensus       396 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  474 (677)
                      ..|.++...|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|+++++.+|++..++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3455555555555555555555555555555 55555555555555555555555555555555544422        34


Q ss_pred             HHHHHHHHHHHHhhhcc
Q psy16607        475 YDMVVTCFERALSLALN  491 (677)
Q Consensus       475 ~~~A~~~~~~al~~~p~  491 (677)
                      +.+++..|+++...+|+
T Consensus        77 ~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHhccCcc
Confidence            44555555555555544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.75  E-value=2e-07  Score=81.05  Aligned_cols=109  Identities=13%  Similarity=0.031  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh----CCChHHHHHH
Q psy16607        372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLF  447 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  447 (677)
                      ++++|+.+|+++.+.....  +.  +|.+|...+..++|+++|+++.+.  .++.+++.+|.+|..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4556666666666554322  22  666666666666666666666654  456666666666666    5666666666


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q psy16607        448 YRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSL  488 (677)
Q Consensus       448 ~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  488 (677)
                      |+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            6666655  456666666666666    66666777776666665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.71  E-value=1.6e-07  Score=99.65  Aligned_cols=123  Identities=11%  Similarity=-0.001  Sum_probs=104.6

Q ss_pred             cCCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHh------hccchHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQM-----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA------LNENAADVWYNIS  580 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~p~~~~~~~~l~  580 (677)
                      .+|++++|+..++++++.     .+++   ..++.++|.+|..+|+|++|+.++++++...      ..|+....++++|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            789999999999999953     3444   5678999999999999999999999999853      1245557789999


Q ss_pred             HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-----DSSHG---LSQNNLAVLEAREGHIERASTYLQAA  652 (677)
Q Consensus       581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a  652 (677)
                      .+|.                   .+|++++|+.+|++++++     .|+++   +....++.++..+|.+++|...|+++
T Consensus       401 ~~~~-------------------~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          401 LTNW-------------------HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-------------------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999                   999999999999999974     56665   45678999999999999999999998


Q ss_pred             HHhC
Q psy16607        653 AASS  656 (677)
Q Consensus       653 l~~~  656 (677)
                      .+..
T Consensus       462 ~~~~  465 (490)
T 3n71_A          462 REAA  465 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.70  E-value=3.9e-07  Score=90.90  Aligned_cols=125  Identities=13%  Similarity=0.020  Sum_probs=100.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCH----HHHHH----HHHHHHHHhhccchHHHHHHHHHHHHHhhc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY----DMVVT----CFERALSLALNENAADVWYNISHVAIITEC  588 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~----~~~~al~~~~~p~~~~~~~~l~~~~~~~~~  588 (677)
                      ....+|+.+|+++++.+|+++.++..++.++.....+    .....    .++.+......|..+.++..++..+.    
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l----  288 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL----  288 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH----
Confidence            4468999999999999999999999888888632111    11112    22222222356888899999988887    


Q ss_pred             CCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q psy16607        589 SPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  661 (677)
Q Consensus       589 ~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  661 (677)
                                     ..|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus       289 ---------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          289 ---------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             ---------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             ---------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence                           889999999999999999974 678889999999999999999999999999998864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.69  E-value=9.4e-08  Score=101.36  Aligned_cols=126  Identities=10%  Similarity=0.073  Sum_probs=91.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----CcC---CHHH
Q psy16607        364 IRVYIRLDQPIRAIDIGRNALDC-----YPNEV---TIMTEMARIFEGLNNMPMSVKYYKLILKR-----DAT---CMEA  427 (677)
Q Consensus       364 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~  427 (677)
                      +..+..+|++++|+..+++++++     .|+++   ..+.++|.+|..+|+|++|+.++++++..     .|+   ....
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            33455667777777777777654     23343   45677788888888888888888887765     233   3556


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607        428 IACIGVNHFYNDQPEVALLFYRRLLQM-----GLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLA  489 (677)
Q Consensus       428 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~  489 (677)
                      +.+||.+|..+|++++|+.+|++++++     .|+++   ....+++.++..++.+++|...|.++.+..
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888888888763     45554   456778888889999999999998886644

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.65  E-value=1.2e-06  Score=83.65  Aligned_cols=108  Identities=14%  Similarity=0.005  Sum_probs=92.6

Q ss_pred             HcCCCcHHHHHHHHHHHHh---c--c------CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhcCCCCcccch
Q psy16607        531 QMGLYNAELFNNLALCCFY---S--Q------QYDMVVTCFERALSLALNEN--AADVWYNISHVAIITECSPFSFSTHT  597 (677)
Q Consensus       531 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~p~--~~~~~~~l~~~~~~~~~~p~~~~~~~  597 (677)
                      +.+|++++.++..|.+...   .  |      ...+|...++++++  ++|+  +..+|..+|.+|.             
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~-------------  210 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA-------------  210 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH-------------
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH-------------
Confidence            5678888887777766533   1  2      34789999999999  8998  6779999999997             


Q ss_pred             hhhHHhc-----CCCHHHHHHHHHHHHccCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q psy16607        598 SYLFIQG-----ISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAR-EGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       598 ~~~~l~~-----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~  659 (677)
                            .     -|+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus       211 ------~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          211 ------AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             ------HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             ------hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence                  6     499999999999999999975 9999999999988 499999999999999988873

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.63  E-value=5.8e-07  Score=89.65  Aligned_cols=135  Identities=8%  Similarity=-0.037  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh----hHHHHHHHH------HHHhCc
Q psy16607        356 DIEAFIRMIRVYIRLDQ---PIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM----PMSVKYYKL------ILKRDA  422 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~------al~~~p  422 (677)
                      ...-++..|..+...+.   ..+|+.+|+++++++|+...++..++.+|.....+    ......+.+      ++..+|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            44455666777666544   47889999999999999988888888777621100    000011110      112234


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        423 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                      .++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|++++|++.|++|+.++|.
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4444444444444444555555555555555543 2344444455555555555555555555555444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.57  E-value=6.7e-07  Score=85.34  Aligned_cols=115  Identities=14%  Similarity=0.086  Sum_probs=91.6

Q ss_pred             hhcccchHHHHHHHHHHHHHhhh---cccccCCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhc-----cCHHHHH
Q psy16607        488 LALNENAADVWYNISHVAILNAL---STSVYNDQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYS-----QQYDMVV  557 (677)
Q Consensus       488 ~~p~~~~~~~~~~l~~~~~l~~l---~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~  557 (677)
                      .+|++  .+.++-.|.++.-+..   ...-..+....|...++++++++|+  +..+|..+|.+|...     |+.++|.
T Consensus       147 ~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          147 CTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             CCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             cCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            35555  6666666655531111   1112334568999999999999999  677999999999995     9999999


Q ss_pred             HHHHHHHHHhhccch-HHHHHHHHHHHHHhhcCCCCcccchhhhHHhc-CCCHHHHHHHHHHHHccCCCC
Q psy16607        558 TCFERALSLALNENA-ADVWYNISHVAIITECSPFSFSTHTSYLFIQG-ISDTRLAIQCLHLALSIDSSH  625 (677)
Q Consensus       558 ~~~~~al~~~~~p~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~-~g~~~~A~~~~~~al~~~p~~  625 (677)
                      .+|+++++  ++|+. ...++..|..+.                   . .|++++|..++++++..+|..
T Consensus       225 ~~ferAL~--LnP~~~id~~v~YA~~l~-------------------~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          225 TAFEHLTR--YCSAHDPDHHITYADALC-------------------IPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHH--HCCTTCSHHHHHHHHHTT-------------------TTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHH--hCCCCCchHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999  89975 999999999887                   6 599999999999999988874

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.57  E-value=1.1e-05  Score=86.17  Aligned_cols=169  Identities=11%  Similarity=0.024  Sum_probs=131.7

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHccC--CCHHHHHHHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLG---------LIREAQQQFNSALNQF--TDIEAFIRMIRVY  367 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~--p~~~~~~~la~~~  367 (677)
                      +.+.|++++|+++|+++.+..-..+...+..+-.++...+         ..++|..+|+++....  |+..+|..+...|
T Consensus        36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~  115 (501)
T 4g26_A           36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA  115 (501)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            6778999999999999988765556666666666665544         3788999999888754  6889999999999


Q ss_pred             HHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhCCChHHHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCY-PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVAL  445 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~  445 (677)
                      .+.|++++|..+|+++.+.. ..+...|..+...|.+.|+.++|.++|+++.+..-. +...+..+...+.+.|+.++|.
T Consensus       116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~  195 (501)
T 4g26_A          116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY  195 (501)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence            99999999999999887653 236778888888999999999999999998876432 6778888899999999999999


Q ss_pred             HHHHHHHHcCC-CCHHHHHHHHH
Q psy16607        446 LFYRRLLQMGL-YNAELFNNLAL  467 (677)
Q Consensus       446 ~~~~~al~~~~-~~~~~~~~la~  467 (677)
                      ++++++.+..- -+...+..+-.
T Consensus       196 ~ll~~Mr~~g~~ps~~T~~~l~~  218 (501)
T 4g26_A          196 KTLQRLRDLVRQVSKSTFDMIEE  218 (501)
T ss_dssp             HHHHHHHHHTSSBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcCHHHHHHHHH
Confidence            99998876432 23344444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.47  E-value=3.1e-05  Score=82.74  Aligned_cols=168  Identities=7%  Similarity=0.028  Sum_probs=97.0

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhCc-CCHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHcC-CCCHHHHH
Q psy16607        395 TEMARIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQ---------PEVALLFYRRLLQMG-LYNAELFN  463 (677)
Q Consensus       395 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-~~~~~~~~  463 (677)
                      ..+-..+.+.|+.++|+++|+++.+..- -+..+|..+..++...+.         .++|.++|+++.... ..+...+.
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn  109 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT  109 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            3334445555555555555555544321 134444444444443332         455666666665543 22555666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CCcHHHH
Q psy16607        464 NLALCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LYNAELF  540 (677)
Q Consensus       464 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  540 (677)
                      .+...|.+.|++++|..+|+++....  |+   ...|..+...+.        +.|+.++|.+.|+++.+.. ..+...|
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~--------~~g~~~~A~~l~~~M~~~G~~Pd~~ty  178 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFC--------RKGDADKAYEVDAHMVESEVVPEEPEL  178 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHH--------HCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence            66666666677777776666665542  33   555666666665        6677777777777666442 2345566


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccchH
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENAA  573 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~  573 (677)
                      ..+..++.+.|+.++|..+|+++.+....|+..
T Consensus       179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            677777777777777777777776655555543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.45  E-value=1.6e-06  Score=74.75  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC---CHHHHHHHHHHHHccC-C-CChH
Q psy16607        553 YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS---DTRLAIQCLHLALSID-S-SHGL  627 (677)
Q Consensus       553 ~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g---~~~~A~~~~~~al~~~-p-~~~~  627 (677)
                      ...+.+.|.+.+.  .++.+.++.+++|.++.                   +.+   +.++++..++..++.+ | ++.+
T Consensus        14 l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv-------------------~S~~~~~~~~gI~lLe~ll~~~~p~~~rd   72 (152)
T 1pc2_A           14 LLKFEKKFQSEKA--AGSVSKSTQFEYAWCLV-------------------RSKYNDDIRKGIVLLEELLPKGSKEEQRD   72 (152)
T ss_dssp             HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHH-------------------TCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHc--cCCCcHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence            3556667777766  67788899999999998                   888   6779999999999998 6 5689


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        628 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       628 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                      .++++|..+.+.|+|++|+.+++++++++|++..+....-.+-
T Consensus        73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887655544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=3.1e-06  Score=72.85  Aligned_cols=100  Identities=9%  Similarity=0.052  Sum_probs=87.5

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhc-c-chHHHHHHHHHHHHHhhcC
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALN-E-NAADVWYNISHVAIITECS  589 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~-p-~~~~~~~~l~~~~~~~~~~  589 (677)
                      ..+....+.+.|.+.+..++.+.++.+++|+++.+.+   +.++++.+++..++  .+ | +..++++++|..+.     
T Consensus        10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~~~p~~~rd~lY~LAv~~~-----   82 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNY-----   82 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHH-----
Confidence            3345667788888888889999999999999999988   67799999999999  66 7 67899999999999     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  635 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  635 (677)
                                    +.|+|++|+++++++++++|++..+...+-.+
T Consensus        83 --------------kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           83 --------------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             --------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             --------------HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence                          99999999999999999999998877655444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.37  E-value=2.2e-06  Score=68.18  Aligned_cols=70  Identities=16%  Similarity=0.054  Sum_probs=34.1

Q ss_pred             CCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        388 PNEVTIMTEMARIFEGLNN---MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                      |++++++..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4444455555544443333   345555555555555555555555555555555555555555555544444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.33  E-value=3.2e-06  Score=67.28  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             CcCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        421 DATCMEAIACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       421 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      +|+++..+..+|.+++..++   .++|..+++++++.+|+++.++..+|..++..|+|++|+.+++++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            58899999999999976665   7999999999999999999999999999999999999999999999998875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.28  E-value=7.4e-06  Score=66.91  Aligned_cols=80  Identities=20%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL  610 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~  610 (677)
                      ++.-++.+|..++..++|..|+.+|++|+....     .+....++..+|.++.                   ++|++++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-------------------~~g~~~~   64 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-------------------QQGDLDK   64 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-------------------HTTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-------------------HccCHHH
Confidence            456788999999999999999999999998532     2356789999999999                   9999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHH
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAV  634 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~  634 (677)
                      |+.++++++++.|++..+..+++.
T Consensus        65 A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           65 ALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHhhHHH
Confidence            999999999999999999888873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.27  E-value=7.2e-06  Score=66.99  Aligned_cols=79  Identities=14%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccC-------CCChHHHHHHHHHHHHcCCHHHH
Q psy16607        573 ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSID-------SSHGLSQNNLAVLEAREGHIERA  645 (677)
Q Consensus       573 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A  645 (677)
                      +.-.+.+|..+.                   ..|+|..|+..|+++++..       +..+.++..+|.++.++|++++|
T Consensus         5 a~dc~~lG~~~~-------------------~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A   65 (104)
T 2v5f_A            5 AEDCFELGKVAY-------------------TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA   65 (104)
T ss_dssp             HHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHH-------------------HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHH
Confidence            344567888887                   9999999999999999853       34578899999999999999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        646 STYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       646 ~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                      +.+++++++++|++..+..+++.+.
T Consensus        66 ~~~~~~al~l~P~~~~~~~n~~~~~   90 (104)
T 2v5f_A           66 LLLTKKLLELDPEHQRANGNLKYFE   90 (104)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHhhHHHHH
Confidence            9999999999999999998888443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.20  E-value=7.2e-06  Score=85.45  Aligned_cols=97  Identities=10%  Similarity=-0.079  Sum_probs=79.8

Q ss_pred             hccCHHHHHHHHHHHHHHh---hcc---chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-
Q psy16607        549 YSQQYDMVVTCFERALSLA---LNE---NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-  621 (677)
Q Consensus       549 ~~g~~~~A~~~~~~al~~~---~~p---~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-  621 (677)
                      ..|+|++|+..+++++++.   ..|   .....+.++|.+|.                   .+|+|++|+.++++++++ 
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-------------------~~g~~~eA~~~~~~aL~i~  370 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-------------------YMQDWEGALKYGQKIIKPY  370 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-------------------hhcCHHHHHHHHHHHHHHH
Confidence            4578999999999998853   223   44567889999998                   999999999999999974 


Q ss_pred             ----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHH
Q psy16607        622 ----DSSHG---LSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYETHY  664 (677)
Q Consensus       622 ----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~  664 (677)
                          .|+++   ..+++||.+|..+|++++|+.+|++|+++     .|+++...-
T Consensus       371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence                45554   56899999999999999999999999984     688876543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.13  E-value=1.7e-05  Score=82.70  Aligned_cols=111  Identities=12%  Similarity=-0.010  Sum_probs=88.0

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHh---hcc---chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHH
Q psy16607        544 ALCCFYSQQYDMVVTCFERALSLA---LNE---NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHL  617 (677)
Q Consensus       544 a~~~~~~g~~~~A~~~~~~al~~~---~~p---~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~  617 (677)
                      ..-+...|+|++|+..++++++..   ..|   .....+.+++.+|.                   .+|+|++|+.++++
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-------------------~~g~~~eA~~~~~~  354 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-------------------NLGLLEEALFYGTR  354 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-------------------hhccHHHHHHHHHH
Confidence            334557789999999999999742   123   44567889999998                   99999999999999


Q ss_pred             HHcc-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChH---HHHHHHHHHHhc
Q psy16607        618 ALSI-----DSSHG---LSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---THYNQAVISNLV  673 (677)
Q Consensus       618 al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~  673 (677)
                      ++.+     .|+++   ..+++||.+|..+|++++|+.+|++|+++     .|+++.   .+.+|+.+...+
T Consensus       355 ~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          355 TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9974     45554   56899999999999999999999999984     677764   456677666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.06  E-value=2.1e-05  Score=81.96  Aligned_cols=96  Identities=15%  Similarity=0.255  Sum_probs=80.3

Q ss_pred             cCCCHHHHHHHHHHHHH-----cCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHhh------ccchHHHHHHHH
Q psy16607        515 YNDQPEVALLFYRRLLQ-----MGLYNA---ELFNNLALCCFYSQQYDMVVTCFERALSLAL------NENAADVWYNIS  580 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~-----~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~p~~~~~~~~l~  580 (677)
                      ..|++++|+..++++++     +.|+++   ..+.++|.+|..+|+|++|+.++++++....      .|+....++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            56899999999999995     345554   5788999999999999999999999998531      345556799999


Q ss_pred             HHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc-----CCCChHHH
Q psy16607        581 HVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI-----DSSHGLSQ  629 (677)
Q Consensus       581 ~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~-----~p~~~~~~  629 (677)
                      .+|.                   .+|++++|+.+|++++++     .|+++.+.
T Consensus       390 ~~~~-------------------~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYM-------------------GLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHH-------------------HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHH-------------------hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999                   999999999999999974     67776554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.05  E-value=1.7e-05  Score=82.77  Aligned_cols=86  Identities=6%  Similarity=-0.030  Sum_probs=50.0

Q ss_pred             HHcCChHHHHHHHHHHHHcC-----CCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----CcC---CHHHHHHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCY-----PNEV---TIMTEMARIFEGLNNMPMSVKYYKLILKR-----DAT---CMEAIACI  431 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~l  431 (677)
                      ..+|++++|+..+++++++.     |+++   ..+.++|.+|..+|+|++|+.++++++..     .|+   ....++++
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            34556666666666665432     3332   34556666666666666666666666654     222   24455666


Q ss_pred             HHHHHhCCChHHHHHHHHHHHH
Q psy16607        432 GVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       432 a~~~~~~g~~~~A~~~~~~al~  453 (677)
                      |.+|..+|++++|+.+|+++++
T Consensus       378 a~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Confidence            6666666666666666666665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.83  E-value=0.00012  Score=61.74  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             HcCCCcHHHHHHHHHHHHhccCH------HHHHHHHHHHHHHhhccch-------HHHHHHHHHHHHHhhcCCCCcccch
Q psy16607        531 QMGLYNAELFNNLALCCFYSQQY------DMVVTCFERALSLALNENA-------ADVWYNISHVAIITECSPFSFSTHT  597 (677)
Q Consensus       531 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~p~~-------~~~~~~l~~~~~~~~~~p~~~~~~~  597 (677)
                      -+.|++++.|......+.+.|+.      ++-++.|++|+.. ..|..       ...|...+..               
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~---------------   70 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL---------------   70 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH---------------
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH---------------
Confidence            35799999999999999999999      8899999999983 23322       2334444433               


Q ss_pred             hhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        598 SYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       598 ~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                           ...++.++|.+.|+.++.+....+.+|...|....++|+...|...+.+++.+.|...+.+ ..|..-.+.|
T Consensus        71 -----~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~  141 (161)
T 4h7y_A           71 -----KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQ  141 (161)
T ss_dssp             -----HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTT
T ss_pred             -----HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcC
Confidence                 3679999999999999998888889999999999999999999999999999999876544 3444444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.81  E-value=0.00029  Score=58.22  Aligned_cols=98  Identities=13%  Similarity=0.051  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH---HHHHHHHHHccC-C-CCh
Q psy16607        552 QYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL---AIQCLHLALSID-S-SHG  626 (677)
Q Consensus       552 ~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~---A~~~~~~al~~~-p-~~~  626 (677)
                      ....+...|.+...  .++....+.+++++++.                   +..+...   ++..++..+..+ | ...
T Consensus        16 ~l~~~~~~y~~e~~--~~~~s~~~~F~yAw~Lv-------------------~S~~~~d~~~GI~lLe~l~~~~~p~~~R   74 (126)
T 1nzn_A           16 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLV-------------------RTRYNDDIRKGIVLLEELLPKGSKEEQR   74 (126)
T ss_dssp             HHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHT-------------------TSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence            34455666666665  56677888999999887                   7777665   999999999876 4 456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        627 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       627 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                      +.++.||..+++.|+|++|+.+++.+++..|++..+......+-
T Consensus        75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            89999999999999999999999999999999998877655544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.75  E-value=0.0004  Score=57.44  Aligned_cols=97  Identities=9%  Similarity=0.057  Sum_probs=82.4

Q ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHhhc-c-chHHHHHHHHHHHHHhhcCCCC
Q psy16607        518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM---VVTCFERALSLALN-E-NAADVWYNISHVAIITECSPFS  592 (677)
Q Consensus       518 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~-p-~~~~~~~~l~~~~~~~~~~p~~  592 (677)
                      ....+...|.+.+..++.+..+.+++|+++.+..+..+   ++.+++..+.  .. | ...+.++.+|..+.        
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~y--------   85 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNY--------   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHH--------
Confidence            34566677777778788999999999999999987766   9999999887  44 5 56789999999998        


Q ss_pred             cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q psy16607        593 FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  635 (677)
Q Consensus       593 ~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  635 (677)
                                 +.|+|++|+.+++.+++..|++..+......+
T Consensus        86 -----------klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           86 -----------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             -----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -----------HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                       99999999999999999999998877655444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.67  E-value=0.0009  Score=56.47  Aligned_cols=106  Identities=8%  Similarity=-0.093  Sum_probs=84.4

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHhCcCC--------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607        386 CYPNEVTIMTEMARIFEGLNNM------PMSVKYYKLILKRDATC--------MEAIACIGVNHFYNDQPEVALLFYRRL  451 (677)
Q Consensus       386 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a  451 (677)
                      ..|++++.|........+.|+.      ++-++.|++++..-|..        ...|...+.. ...++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4688888888888888888888      78888888888776532        4455555644 4558899999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        452 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       452 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ++.....+.+|...|..-.++|+...|.+.+.+++.+.|.+
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            88877778889999999999999999999999999998886

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.20  E-value=0.0031  Score=54.57  Aligned_cols=134  Identities=11%  Similarity=0.010  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC---C
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE---------VTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT---C  424 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~  424 (677)
                      ..+++.-...++..|.|+.|+-....++....++         ..++..+|.+++..++|..|...|+++++....   .
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456677778888899999998888876654322         237788999999999999999999998765331   2


Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        425 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      ......++.    ...+..       ... .+.+.++.+.++.||.+.+++++|+..++..-.....   +.+-..+|..
T Consensus       100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt---~kvnm~LakL  164 (167)
T 3ffl_A          100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT---PKINMLLANL  164 (167)
T ss_dssp             ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC---HHHHHHHHHH
T ss_pred             CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC---HHHHHHHHHH
Confidence            111111110    000000       011 1345678899999999999999999998875444333   5566666655


Q ss_pred             H
Q psy16607        505 A  505 (677)
Q Consensus       505 ~  505 (677)
                      |
T Consensus       165 y  165 (167)
T 3ffl_A          165 Y  165 (167)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.15  E-value=0.0017  Score=56.23  Aligned_cols=58  Identities=10%  Similarity=-0.010  Sum_probs=30.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccC---C-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQF---T-------DIEAFIRMIRVYIRLDQPIRAIDIGRNALD  385 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  385 (677)
                      +.-...++..|.|+.|+-....++...   +       ...++..+|.+++..++|..|...|+++++
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            444555555555555555555544322   1       123455556666666666666666665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.92  E-value=0.012  Score=48.68  Aligned_cols=80  Identities=6%  Similarity=-0.072  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16607        321 FRDWWWKVQLGKCYFSLGLI---REAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT  395 (677)
Q Consensus       321 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  395 (677)
                      .......+.+|.++.+..+.   .+++.+++..++..|  ..+.++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            44556668888888887653   468888888887777  5678888888888888888888888888888888877665


Q ss_pred             HHHHH
Q psy16607        396 EMARI  400 (677)
Q Consensus       396 ~la~~  400 (677)
                      ....+
T Consensus       117 Lk~~I  121 (134)
T 3o48_A          117 LKSMV  121 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.83  E-value=0.021  Score=47.94  Aligned_cols=73  Identities=7%  Similarity=-0.058  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16607        323 DWWWKVQLGKCYFSLGLI---REAQQQFNSALNQFT--DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMT  395 (677)
Q Consensus       323 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  395 (677)
                      .....+.+|.++.+..+.   .+++.+++..+...|  ..+.++.+|..++++|+|.+|..+.+.+++..|++..+..
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            334445666666655432   345555655555554  3455555556666666666666666666666655555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.77  E-value=0.056  Score=45.37  Aligned_cols=78  Identities=9%  Similarity=0.013  Sum_probs=51.9

Q ss_pred             CCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHH
Q psy16607        534 LYNAELFNNLALCCFYSQQY---DMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTR  609 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~  609 (677)
                      ..+..+.+++|+++.+..+.   .+++.+++..+.  ..| ...+.++.++..+.                   ++|+|+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~y-------------------kl~~Y~   94 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCY-------------------KLGEYS   94 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHH-------------------TTTCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHH-------------------HhhhHH
Confidence            45667777788777776654   356777777666  445 45566666776666                   777777


Q ss_pred             HHHHHHHHHHccCCCChHHHHHH
Q psy16607        610 LAIQCLHLALSIDSSHGLSQNNL  632 (677)
Q Consensus       610 ~A~~~~~~al~~~p~~~~~~~~l  632 (677)
                      +|..+.+.+++..|++..+....
T Consensus        95 ~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           95 MAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHH
Confidence            77777777777777776554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.74  E-value=0.021  Score=47.24  Aligned_cols=76  Identities=9%  Similarity=0.038  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHH
Q psy16607        355 TDIEAFIRMIRVYIRLDQP---IRAIDIGRNALDCYP-NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIAC  430 (677)
Q Consensus       355 p~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  430 (677)
                      +...+.+.+|.++.+..+.   .+++.+++..++..| ...+.++.+|..+.++|+|++|.++.+.+++..|++..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            4778888888888877654   467778888877777 346778888888888888888888888888888887665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.68  E-value=0.14  Score=58.09  Aligned_cols=45  Identities=11%  Similarity=0.098  Sum_probs=26.9

Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      ...|++++|.++.+.     .++...|..+|..+.+.++++.|+.+|.++
T Consensus       663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            445666666555432     245566666666666666666666666654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.46  E-value=1.3  Score=47.80  Aligned_cols=249  Identities=12%  Similarity=-0.017  Sum_probs=131.2

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHH-
Q psy16607        367 YIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL-  445 (677)
Q Consensus       367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-  445 (677)
                      +.+.+++..-+.++..    .|.+...-..........|+..+|....+++.......+.....+-..+...|...... 
T Consensus        82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~  157 (618)
T 1qsa_A           82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY  157 (618)
T ss_dssp             HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH
Confidence            3446677766664443    37778877788888888888877777777666554444444444444444434332221 


Q ss_pred             -HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc-----------chHHHHHHHHHHHHHhhhccc
Q psy16607        446 -LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----------NAADVWYNISHVAILNALSTS  513 (677)
Q Consensus       446 -~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~~l~~~~~l~~l~~~  513 (677)
                       .-++.++..  .+......++...  -... .++.-...++..+|..           .........+....       
T Consensus       158 ~~R~~~al~~--~~~~~a~~l~~~l--~~~~-~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rl-------  225 (618)
T 1qsa_A          158 LERIRLAMKA--GNTGLVTVLAGQM--PADY-QTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASV-------  225 (618)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHTC--CGGG-HHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHhC--CHHH-HHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHH-------
Confidence             111111111  1111111111110  0000 0000000111112211           00111122222222       


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAEL----FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS  589 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~  589 (677)
                       ...+.+.|...+........-+...    +..++.-+...+...++...+.+...  ...++.......+.. .     
T Consensus       226 -ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~A-l-----  296 (618)
T 1qsa_A          226 -ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMA-L-----  296 (618)
T ss_dssp             -HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHH-H-----
T ss_pred             -HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHH-H-----
Confidence             3457888988888776443333322    22233333344446677777777654  333333222222333 3     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                                    +.|+++.|...|+++-..........+.+|..+...|+.++|..+|+++..
T Consensus       297 --------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          297 --------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             --------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             --------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence                          679999999999886654445677889999999999999999999999975

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.38  E-value=0.52  Score=47.68  Aligned_cols=95  Identities=11%  Similarity=-0.065  Sum_probs=64.5

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh----ccc-chHHH
Q psy16607        429 ACIGVNHFYNDQPEVALLFYRRLLQMGL--Y----NAELFNNLALCCFYSQQYDMVVTCFERALSLA----LNE-NAADV  497 (677)
Q Consensus       429 ~~la~~~~~~g~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~-~~~~~  497 (677)
                      ..+|.+|+..|+|.+|.+.+.+..+.-.  +    -.+++.....+|...+++.++...+.++....    +++ .....
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            3778888888888888888887776321  1    13566777888999999999999998886653    111 01111


Q ss_pred             HHHHHHHHHHhhhcccc-cCCCHHHHHHHHHHHHH
Q psy16607        498 WYNISHVAILNALSTSV-YNDQPEVALLFYRRLLQ  531 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~-~~~~~~~A~~~~~~al~  531 (677)
                      ...-|..        ++ ..++|..|...|-+++.
T Consensus       183 ~~~~Gi~--------~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          183 DLQSGIL--------HAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHH--------HHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhHH--------HHHhccCHHHHHHHHHHHHh
Confidence            1122222        24 57999999999988874

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.23  E-value=0.2  Score=50.69  Aligned_cols=116  Identities=14%  Similarity=0.034  Sum_probs=79.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHH
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLH  616 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~  616 (677)
                      ..+|..|...|+|.+|...+.+........++    .+++.....+|.                   ..+++.++...+.
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-------------------~~~n~~k~k~~l~  163 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-------------------ALSNLPKARAALT  163 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-------------------HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-------------------HhccHHHHHHHHH
Confidence            37899999999999999999998875433222    244445555555                   9999999999999


Q ss_pred             HHHccC---CCCh----HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHhcCC
Q psy16607        617 LALSID---SSHG----LSQNNLAVLEA-REGHIERASTYLQAAAASSPYL-----YETHYNQAVISNLVSV  675 (677)
Q Consensus       617 ~al~~~---p~~~----~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~G~  675 (677)
                      ++....   +.++    .....-|.++. ..++|.+|..+|-++++-..+-     ..+...++.+-...++
T Consensus       164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            887543   1223    34455678888 8999999999999987543322     1233445555544443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.032  Score=61.43  Aligned_cols=112  Identities=10%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHc--------CCCc----------HHHHHHHH
Q psy16607        340 IREAQQQFNSALNQFTDIEAFIRMIRVYIRL---DQPIRAIDIGRNALDC--------YPNE----------VTIMTEMA  398 (677)
Q Consensus       340 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la  398 (677)
                      ++.|+..|++..+.+|....++..+.+....   .+--+|+....+.++.        .+.+          ...+...+
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            4666677777666666444443333332211   1223455555544421        1111          23455556


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy16607        399 RIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL  451 (677)
Q Consensus       399 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  451 (677)
                      ..+...|+++-|+++.++++...|.....|+.|+.+|..+|+++.|+-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            66677778888888888888888877888888888888888888777666544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.081  Score=58.28  Aligned_cols=126  Identities=9%  Similarity=0.000  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHcc--------CC---
Q psy16607        290 VAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYF--SL-GLIREAQQQFNSALNQ--------FT---  355 (677)
Q Consensus       290 ~a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p---  355 (677)
                      +...++.++-...+.++.|+.++++.....|.....  +..+.+..  .. .+--+|+....+.++.        .+   
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~--~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~  327 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIY--YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA  327 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence            344455554333344788999999999888644333  22222222  22 2344577777776642        11   


Q ss_pred             --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16607        356 --------DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLI  417 (677)
Q Consensus       356 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  417 (677)
                              ....+...+..+...|+++-|+.+.++++...|.+...|..|+.+|..+|+|+.|+-.+..+
T Consensus       328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    12356667888889999999999999999999999999999999999999999999877665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.78  E-value=0.43  Score=53.95  Aligned_cols=75  Identities=8%  Similarity=0.029  Sum_probs=46.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      ..+...+...|.+++|+...+.       ....   .......|++++|.+..+.     .++...|..+|..+.+.+++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~-------~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~  697 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD-------QDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNF  697 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC-------HHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCChHHheecCCC-------cchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCH
Confidence            4555666677777776654421       1111   2234556777777766432     24567777777777777777


Q ss_pred             hHHHHHHHHH
Q psy16607        408 PMSVKYYKLI  417 (677)
Q Consensus       408 ~~A~~~~~~a  417 (677)
                      +.|+++|.++
T Consensus       698 ~~A~~~y~~~  707 (814)
T 3mkq_A          698 KLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            7777777765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.45  Score=41.85  Aligned_cols=100  Identities=10%  Similarity=0.080  Sum_probs=57.8

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      ...|+++.|.+..+..     ++...|..+|......|+++-|..+|.++-     +.   -.+..+|...|+.+.-...
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~---~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----SF---DKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CH---HHHHHHHHHHTCHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CH---HHHHHHHHHhCCHHHHHHH
Confidence            4567777777766554     456677777777777777777777777652     22   2233444455555544444


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       448 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      .+.+.....     ++....+++..|+++++++.|.+.
T Consensus        83 a~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           83 QNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            433333221     223344566677777777776543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.82  E-value=0.3  Score=55.11  Aligned_cols=101  Identities=12%  Similarity=0.111  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh-----hhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcC-CC
Q psy16607        462 FNNLALCCFYSQQYDMVVTCFERALS-----LALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMG-LY  535 (677)
Q Consensus       462 ~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~-p~  535 (677)
                      ++.+...|++.|+.++|...|..+.+     ..|+   ...|..+...+.        +.|+.++|.+.|+++.+.. ..
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glc--------k~G~~~eA~~Lf~eM~~~G~~P  198 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWA--------RQGAFKELVYVLFMVKDAGLTP  198 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHH--------hCCCHHHHHHHHHHHHHcCCCC
Confidence            34444444444444444444443321     1222   444444444444        5555555555555554322 23


Q ss_pred             cHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhhccchH
Q psy16607        536 NAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAA  573 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~p~~~  573 (677)
                      +...|+.+..++.+.|+. ++|..+|+++.+.+..|+..
T Consensus       199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v  237 (1134)
T 3spa_A          199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL  237 (1134)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred             cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence            445555555566666653 55666666666655555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.76  E-value=5.6  Score=42.92  Aligned_cols=323  Identities=11%  Similarity=-0.035  Sum_probs=180.2

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      .+++..-+..+..     ++.+.........+....|+-.+|....+++..... .+.....+...+...|........-
T Consensus        85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~  159 (618)
T 1qsa_A           85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE  159 (618)
T ss_dssp             TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence            5666655554332     244555556777788888888888887777766554 4455555555555555554433222


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHH-------------HHHHHHHhCCChHHHHHH
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIA-------------CIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------------~la~~~~~~g~~~~A~~~  447 (677)
                      +--+....++......++...   +.-..++.....++..+|.......             .++.......+.+.|...
T Consensus       160 R~~~al~~~~~~~a~~l~~~l---~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~  236 (618)
T 1qsa_A          160 RIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLM  236 (618)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhC---CHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHH
Confidence            222222222333332232211   1112222222334455665543322             123333444577888888


Q ss_pred             HHHHHHcCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHH
Q psy16607        448 YRRLLQMGLYNAELF----NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVAL  523 (677)
Q Consensus       448 ~~~al~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~  523 (677)
                      +.........+....    ..++.-+...+...++...+.+......++  .......+. .+        ..|+++.|.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~r~-Al--------r~~d~~~a~  305 (618)
T 1qsa_A          237 IPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST--SLIERRVRM-AL--------GTGDRRGLN  305 (618)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH--HHHHHHHHH-HH--------HHTCHHHHH
T ss_pred             HHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh--HHHHHHHHH-HH--------HCCCHHHHH
Confidence            887765443343322    223333333443556777777765544443  222222233 33        569999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-CC--CCcc------
Q psy16607        524 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC-SP--FSFS------  594 (677)
Q Consensus       524 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~-~p--~~~~------  594 (677)
                      ..+..+-......+...+-+|.++...|+.++|..+|+++..    +..  .|-.++........ .+  ....      
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~~--fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~  379 (618)
T 1qsa_A          306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQRIGEEYELKIDKAPQNVDSAL  379 (618)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHHTTCCCCCCCCCCCSCCCCHH
T ss_pred             HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCC--hHHHHHHHHcCCCCCCCCCCCChhHHhhh
Confidence            999876654445678889999999999999999999999875    222  23233322211110 11  0000      


Q ss_pred             ----cchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16607        595 ----THTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA  651 (677)
Q Consensus       595 ----~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  651 (677)
                          .......+...|....|...+...+...  +..-...++.+....|.+..++....+
T Consensus       380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~  438 (618)
T 1qsa_A          380 TQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA  438 (618)
T ss_dssp             HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence                0111236778899999988888777542  344556778888888998888766543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.74  E-value=0.27  Score=55.46  Aligned_cols=91  Identities=10%  Similarity=-0.084  Sum_probs=75.9

Q ss_pred             HHHhcccCHHHHHHHHHHHHhh---CcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHcC
Q psy16607        297 YLYHHENDVASAMDLAVESTKA---CEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQF--TDIEAFIRMIRVYIRLD  371 (677)
Q Consensus       297 ~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g  371 (677)
                      ..|++.|+.++|..+|.++.+.   ....+...|+.+...+.+.|++++|.++|+++....  |+..+|..+..++.+.|
T Consensus       135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G  214 (1134)
T 3spa_A          135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD  214 (1134)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Confidence            3478889999999999876532   224466777899999999999999999999998854  79999999999999999


Q ss_pred             Ch-HHHHHHHHHHHHcC
Q psy16607        372 QP-IRAIDIGRNALDCY  387 (677)
Q Consensus       372 ~~-~~A~~~~~~al~~~  387 (677)
                      +. ++|.++++++.+..
T Consensus       215 ~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          215 QDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHcC
Confidence            85 78889999988764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.57  E-value=0.58  Score=40.14  Aligned_cols=103  Identities=16%  Similarity=0.074  Sum_probs=77.9

Q ss_pred             CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHH
Q psy16607        534 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQ  613 (677)
Q Consensus       534 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~  613 (677)
                      |..++.-..++..++-.|.|..++-.+       .+-+...+.+.-..||.                   +.++|..|+.
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L-------~~lNT~Ts~YYk~LCy~-------------------klKdYkkA~~   83 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHL-------HKLNTCTSKYYESLCYK-------------------KKKDYKKAIK   83 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHH-------HTCCBHHHHHHHHHHHH-------------------HTTCHHHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHH-------HhcchHHHHHHHHHHHH-------------------HHHHHHHHHH
Confidence            344455667788888999998887665       34556677777788888                   9999999999


Q ss_pred             HHHHHHc--c---------------CCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q psy16607        614 CLHLALS--I---------------DSSHGL-SQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  662 (677)
Q Consensus       614 ~~~~al~--~---------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  662 (677)
                      .++..++  .               +|.+.+ .+..+|.++...|+.++|+.+|.......|-.+..
T Consensus        84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            9999983  2               233444 45678999999999999999999999988866543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.98  Score=39.68  Aligned_cols=44  Identities=9%  Similarity=0.066  Sum_probs=24.6

Q ss_pred             hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        437 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      ..|+++.|.+..+..     ++...|..+|......|+++-|..+|.++
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            445555555554443     34555666666666666666666665554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.29  E-value=1.4  Score=41.42  Aligned_cols=118  Identities=10%  Similarity=-0.044  Sum_probs=83.9

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      ++.|..++|++.....++.+|.+......+..+++-.|+++.|...++.+.+  .+|+....-..+..+.          
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI----------   75 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLV----------   75 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH----------
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHH----------
Confidence            4889999999999999999999999999999999999999999999999999  7887654332221111          


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHcc--C---CCChHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSI--D---SSHGLSQN---NLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~--~---p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                                      .|...=.+.+.-  .   +..+..|.   .-+......|+.++|.+.-.++++..|..
T Consensus        76 ----------------~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           76 ----------------KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             ----------------HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             ----------------HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence                            011111222221  1   12233332   33455566799999999999998887754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.05  E-value=0.25  Score=51.43  Aligned_cols=142  Identities=17%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             cCCCHHHHHHHHHHHH-----------HcCCCcHHHHHHHHHHHHhccCHHHHH----------HHHHHHHHHh---hcc
Q psy16607        515 YNDQPEVALLFYRRLL-----------QMGLYNAELFNNLALCCFYSQQYDMVV----------TCFERALSLA---LNE  570 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al-----------~~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~---~~p  570 (677)
                      ..+++++|..+-...+           .+++-.+.+|+..+.++...|+..+..          ..+-.++..+   .++
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~  227 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN  227 (523)
T ss_dssp             -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence            5677777777665544           123445677888888888877765532          2233333321   122


Q ss_pred             -chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-------hHHHHHHHHHHHHcCCH
Q psy16607        571 -NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHI  642 (677)
Q Consensus       571 -~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~  642 (677)
                       .....++.+-..|.                   ..+.+++|..+..++.  .|..       ...++.+|.++.-.++|
T Consensus       228 ~~qa~l~nllLRnYL-------------------~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y  286 (523)
T 4b4t_S          228 ETKAMLINLILRDFL-------------------NNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDY  286 (523)
T ss_dssp             CHHHHHHHHHHHHHH-------------------HSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             chhHHHHHHHHHHHH-------------------ccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccH
Confidence             23456777777777                   9999999999999985  3322       34567789999999999


Q ss_pred             HHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHhcCCCC
Q psy16607        643 ERASTYLQAAAASSPYLY-------ETHYNQAVISNLVSVIP  677 (677)
Q Consensus       643 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~G~ip  677 (677)
                      .+|.+++..|+...|.+.       .++..+..+...+|.||
T Consensus       287 ~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP  328 (523)
T 4b4t_S          287 STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIP  328 (523)
T ss_dssp             HHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence            999999999999888653       23334555666689998

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.91  E-value=2.8  Score=36.04  Aligned_cols=160  Identities=9%  Similarity=-0.063  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--cC--C-----------
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALN--QF--T-----------  355 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~--p-----------  355 (677)
                      .+.+++.+++-.|.+..++-.+..      .+.....+....|+.+..+|..|+..+++.+.  .+  |           
T Consensus        35 Y~lL~~I~LyyngEY~R~Lf~L~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           35 YRMLMSIVLYLNGEYTRALFHLHK------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHhhhhhhhhhcchHhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            455667777778999888876644      33555557788899999999999999999883  22  2           


Q ss_pred             ---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH-----------HHHHHcCC-------hhHHH--
Q psy16607        356 ---D-IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA-----------RIFEGLNN-------MPMSV--  411 (677)
Q Consensus       356 ---~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~~~g~-------~~~A~--  411 (677)
                         + ...+..+|.++.+.|+.++|+.++.......|--+.+-..+-           .+. ..|+       +....  
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~l  187 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEF  187 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------CHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHH-hhhhccchhhhhhhHHHH
Confidence               1 234567888999999999999999888877764332211100           000 0000       01111  


Q ss_pred             ------HHHHHHHHhCcCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q psy16607        412 ------KYYKLILKRDATCMEA-IACIGVNHFYNDQPEVALLFYRRLLQMGLY  457 (677)
Q Consensus       412 ------~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~  457 (677)
                            ...++-...-|.-... ....+.-|+..|-.++...+|...-+.+|.
T Consensus       188 He~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          188 HESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence                  1111222222332222 234577889999999999999999888875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.60  E-value=0.87  Score=46.32  Aligned_cols=61  Identities=11%  Similarity=0.133  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16607        427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  487 (677)
Q Consensus       427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  487 (677)
                      +...++..+...|++.+++..+..++..+|.+..++..+..++...|+..+|+..|+++-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444556666666666666666666666666666666666666666666666666666543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.34  E-value=0.38  Score=50.41  Aligned_cols=79  Identities=18%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        575 VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       575 ~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                      .+..+|.+..                   ....++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++.
T Consensus       154 ~l~~LGDL~R-------------------Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          154 CLVHLGDIAR-------------------YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHcccHHH-------------------HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            4566788776                   778899999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHh
Q psy16607        655 SSPYLYETHYNQAVISNL  672 (677)
Q Consensus       655 ~~p~~~~~~~~la~~~~~  672 (677)
                      .....+.+..|+..++..
T Consensus       215 ~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          215 VKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSBCCHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHH
Confidence            888889999999887754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.32  E-value=5.8  Score=44.67  Aligned_cols=23  Identities=4%  Similarity=-0.086  Sum_probs=18.7

Q ss_pred             HHHHhhhhcChHHHHHHHHHHhh
Q psy16607        122 YAVDHFHKRNFEKCAAICTELLA  144 (677)
Q Consensus       122 ~a~~~~~~~~~~~a~~~~~~~l~  144 (677)
                      ...++.+.++.+.+.++|.+++.
T Consensus       236 a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          236 LNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            44778888899999999998874

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.94  E-value=1.3  Score=44.96  Aligned_cols=93  Identities=13%  Similarity=-0.056  Sum_probs=76.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16607        361 IRMIRVYIRLDQPIRAIDIGRNALDCYPNE----------------------VTIMTEMARIFEGLNNMPMSVKYYKLIL  418 (677)
Q Consensus       361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al  418 (677)
                      ...+......|+...|...+++++.+....                      ..+...++..+...|++.+++..+.+++
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~  198 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT  198 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334444456789999999999999875221                      0134456777889999999999999999


Q ss_pred             HhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy16607        419 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  453 (677)
Q Consensus       419 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  453 (677)
                      ..+|-+..++..+..++...|+..+|++.|+++..
T Consensus       199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          199 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.88  E-value=6.6  Score=46.20  Aligned_cols=123  Identities=11%  Similarity=-0.010  Sum_probs=86.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-c------------------
Q psy16607        430 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-L------------------  490 (677)
Q Consensus       430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p------------------  490 (677)
                      .+...+...+.++-+.+    .+...+.++...+.+|.++...|++++|..+|+++-.-- .                  
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44555666677765544    345567778788999999999999999999998873210 0                  


Q ss_pred             --ccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC-cH----HHHHHHHHHHHhccCHHHHHHHHHHH
Q psy16607        491 --NENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY-NA----ELFNNLALCCFYSQQYDMVVTCFERA  563 (677)
Q Consensus       491 --~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a  563 (677)
                        .......+..+..++.        +.+.++.+++..+.+++..+. +.    ..|.++-..+...|+|++|...+...
T Consensus       893 ~~~~~l~~YY~hv~~LFe--------~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLF--------EESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHH--------HTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence              0012334555555665        788999999999999976543 32    26778888899999999998887654


Q ss_pred             H
Q psy16607        564 L  564 (677)
Q Consensus       564 l  564 (677)
                      -
T Consensus       965 p  965 (1139)
T 4fhn_B          965 S  965 (1139)
T ss_dssp             H
T ss_pred             C
Confidence            3

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.84  E-value=1.8  Score=50.96  Aligned_cols=120  Identities=8%  Similarity=-0.027  Sum_probs=89.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh---------------------
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR---------------------  420 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------  420 (677)
                      .+...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-.-                     
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44555666677766544    34456777777889999999999999999999876211                     


Q ss_pred             --CcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        421 --DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-YNA----ELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       421 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~----~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                        .......|..+..++.+.+.++.+++..+.+++..+ ++.    ..|.++-..+...|+|++|...+...
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence              011245677888899999999999999999998654 333    26777888899999999998877544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.83  E-value=9.8  Score=39.27  Aligned_cols=186  Identities=12%  Similarity=0.049  Sum_probs=119.3

Q ss_pred             ccCHHHHHHHHHHHHhhCc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHH---HHH-HcC
Q psy16607        302 ENDVASAMDLAVESTKACE-----FRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIR---VYI-RLD  371 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~---~~~-~~g  371 (677)
                      .|+++.|++.+....+...     .........+...+...|+++.....+.-..+... ...+...+..   -+. ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            3778888887765554321     23344456677888899999988777765554433 2222222211   111 122


Q ss_pred             ChHHHHHHHHHHHHcC----CC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCc--C----CHHHHHHHHHH
Q psy16607        372 QPIRAIDIGRNALDCY----PN-------EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDA--T----CMEAIACIGVN  434 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~  434 (677)
                      ..+..  .....+..-    ..       .......++.++...|++.+|...+.....-.-  .    -.+.+.....+
T Consensus       109 ~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            22211  111222211    10       234567899999999999999999988754211  1    25677888999


Q ss_pred             HHhCCChHHHHHHHHHHHH---cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy16607        435 HFYNDQPEVALLFYRRLLQ---MGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLA  489 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~---~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~  489 (677)
                      +...+++.+|...+.++..   ..+..+    ..+...|.++...++|.+|..+|..++...
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            9999999999999998743   233333    356678999999999999999999988653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.81  E-value=10  Score=39.19  Aligned_cols=184  Identities=5%  Similarity=-0.056  Sum_probs=117.3

Q ss_pred             CCHHHHHHHHHHHHccC------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH---HH-HcCC
Q psy16607        338 GLIREAQQQFNSALNQF------T-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARI---FE-GLNN  406 (677)
Q Consensus       338 g~~~~A~~~~~~al~~~------p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~-~~g~  406 (677)
                      |++++|++.+....+..      + ...+...+..++...++++...+.+.-..+.......+...+...   +. ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            56778887765544321      1 578888899999999999998887766555444333332222221   11 1222


Q ss_pred             hhHHHHHHHHHHHhC----c-------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC----HHHHHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRD----A-------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCC  469 (677)
Q Consensus       407 ~~~A~~~~~~al~~~----p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~----~~~~~~la~~~  469 (677)
                      .+..  .....+..-    .       ........|+.++...|++.+|..++.....-  ...+    .+.+.....+|
T Consensus       110 ~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          110 LDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             THHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             hhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            2211  111222211    1       12445678999999999999999999987642  1111    46778889999


Q ss_pred             HHcCCHHHHHHHHHHHHhh-h--ccc--chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH
Q psy16607        470 FYSQQYDMVVTCFERALSL-A--LNE--NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ  531 (677)
Q Consensus       470 ~~~g~~~~A~~~~~~al~~-~--p~~--~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~  531 (677)
                      ...+++..|...+.++... .  +.+  .....+...|.++.        ..++|.+|..+|..++.
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~--------~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISL--------HKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHh
Confidence            9999999999999987431 1  111  12334455566666        78999999999888874

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.53  E-value=5  Score=37.72  Aligned_cols=59  Identities=12%  Similarity=0.072  Sum_probs=51.1

Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      .+.+.|+.++|++.....++..|.+......+..+++-.|+++.|.+-++.+.+++|..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            45677888889999988899999999888888899999999999999999888888885

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.95  E-value=0.74  Score=48.23  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16607        395 TEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  469 (677)
Q Consensus       395 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  469 (677)
                      ..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus       156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            344444444444445555555555555555555555555554444444444444444444433444444444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.17  E-value=23  Score=39.89  Aligned_cols=124  Identities=10%  Similarity=-0.015  Sum_probs=72.4

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-------cc-chH
Q psy16607        429 ACIGVNHFYNDQPEVALLFYRRLLQMG-LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLAL-------NE-NAA  495 (677)
Q Consensus       429 ~~la~~~~~~g~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~-~~~  495 (677)
                      ..+|.+  ..|+.++++..+.+.+... ..+    ..+.+.+|.++...+  ++++..+...+....       .. ...
T Consensus       380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~  455 (963)
T 4ady_A          380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH  455 (963)
T ss_dssp             HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred             HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence            344444  4577778888887766522 222    235566666665555  468888888776543       11 112


Q ss_pred             HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA--ELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      .+...+|.++.        -.+ -+++.+.+...+..+....  .+-..+|.++.-.|+-+-...++..+.+
T Consensus       456 gAaLGLGla~~--------GS~-~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e  518 (963)
T 4ady_A          456 GASLGIGLAAM--------GSA-NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE  518 (963)
T ss_dssp             HHHHHHHHHST--------TCC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--------CCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence            34445555543        333 3577788887776443222  3455677888888887666666666554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.21  E-value=1.3  Score=45.98  Aligned_cols=62  Identities=5%  Similarity=-0.038  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q psy16607        393 IMTEMARIFEGLNNMPMSVKYYKLILKRDATC-------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  456 (677)
Q Consensus       393 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  456 (677)
                      ++..+-..|...+.++.|..+..++.  .|..       ...++.+|.++...++|.+|.+++..++...|
T Consensus       233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            34444445555555555555555442  1211       23344445555555555555555555554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.20  E-value=1.4  Score=45.48  Aligned_cols=103  Identities=16%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL  615 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p-~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~  615 (677)
                      ..++..+|..|.+.|++++|.++|.++......+ ...+.+.....++.                   ..+++..+...+
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-------------------~~~d~~~~~~~~  191 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-------------------FYNDQLYVKEKL  191 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-------------------HHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-------------------HhccHHHHHHHH
Confidence            3577889999999999999999999998755444 34577777777777                   899999999999


Q ss_pred             HHHHccC--CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16607        616 HLALSID--SSHGL----SQNNLAVLEAREGHIERASTYLQAAAASSPY  658 (677)
Q Consensus       616 ~~al~~~--p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  658 (677)
                      +++....  ..++.    .....|.++...++|.+|...|-.++.....
T Consensus       192 ~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          192 EAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            9986542  22333    2334566777889999999999988776543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.73  E-value=2.2  Score=44.02  Aligned_cols=59  Identities=14%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDC  386 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  386 (677)
                      ..+|..|...|++++|.+.|.++.....    ..+.+..+.+++...+++..+...+.++...
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            5788888888999999988888876432    4577777777777888888888777776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	677
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-22
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	9e-09
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.004
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (244), Expect = 1e-22
 Identities = 66/394 (16%), Positives = 140/394 (35%), Gaps = 31/394 (7%)

Query: 294 LFE--YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSAL 351
             E  +  +   D  +A    ++  +          + L   +F    +  +      A+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVL-LLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 352 NQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMS 410
            Q     EA+  +  VY    Q   AI+  R+AL   P+ +     +A       +M  +
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 411 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 470
           V+ Y   L+ +       + +G       + E A   Y + ++     A  ++NL     
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 471 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL 530
              +  + +  FE+A+   L+ N  D + N+ +V               + A+  Y R L
Sbjct: 181 AQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVLK--------EARIFDRAVAAYLRAL 230

Query: 531 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-------- 582
            +   +A +  NLA   +     D+ +  + RA+   L  +  D + N+++         
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVA 288

Query: 583 -------AIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL 635
                    +  C   + S +      +   +   A++    AL +      + +NLA +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 636 EAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             ++G ++ A  + + A   SP   + + N    
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 2/125 (1%)

Query: 283 KYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIRE 342
           +       A          +  VA A D    +              L       G I E
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDC-YNTALRLCPTHADSLNNLANIKREQGNIEE 323

Query: 343 AQQQFNSALNQF-TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401
           A + +  AL  F     A   +  V  +  +   A+   + A+   P      + M    
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

Query: 402 EGLNN 406
           + + +
Sbjct: 384 KEMQD 388

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 9e-09
 Identities = 27/226 (11%), Positives = 73/226 (32%), Gaps = 6/226 (2%)

Query: 358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLN-NMPMSVKYYKL 416
           + +     V  R ++  RA  + R+A++      T+      + + L  ++   + Y   
Sbjct: 44  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103

Query: 417 ILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD 476
           I++      +      V   +   P   L F   +L     N   + +        + +D
Sbjct: 104 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD 163

Query: 477 MVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYN 536
             +   ++ L    +     VW     V  ++  +        E  + +   ++++  +N
Sbjct: 164 NELQYVDQLLK--EDVRNNSVWNQRYFV--ISNTTGYNDRAVLEREVQYTLEMIKLVPHN 219

Query: 537 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 582
              +N L       +          + L L  + ++  +   +  +
Sbjct: 220 ESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI 264

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 22/302 (7%), Positives = 61/302 (20%), Gaps = 31/302 (10%)

Query: 297 YLYHHENDVASAMDLAVESTKACEFRDWWWKVQ----LGKCYFSLGLIREAQQQFNSAL- 351
            +  ++ +   A  LA  + +      ++ ++     LG+     G +  +         
Sbjct: 20  QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 79

Query: 352 ------NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYP--------NEVTIMTEM 397
                      + + I+   +         A +    A                 ++   
Sbjct: 80  MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 139

Query: 398 ARIFEGLNNMPMSVKYYK---LILKRDATCMEAIACIGVNHFYN---------DQPEVAL 445
           A++      +  +    +    +L       +      +               Q     
Sbjct: 140 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 199

Query: 446 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA 505
                      + +       +    +                    N        +   
Sbjct: 200 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259

Query: 506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS 565
               L      +     L    R L++          L    + + +          AL 
Sbjct: 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319

Query: 566 LA 567
           LA
Sbjct: 320 LA 321

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 19/165 (11%), Positives = 46/165 (27%), Gaps = 8/165 (4%)

Query: 341 REAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPI----RAIDIGRNALDCYPNEVTIMTE 396
           +              +         + + L+       + +       +         ++
Sbjct: 66  KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQ 125

Query: 397 MARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 456
           +  I     +    VK           C   +  +G    Y +Q   A  +YR   Q+  
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP 183

Query: 457 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 501
            N + +N LA+       +   +  + R+  +A+         N+
Sbjct: 184 SNGQPYNQLAILASSKGDHLTTIFYYCRS--IAVKFPFPAASTNL 226

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 28/247 (11%), Positives = 64/247 (25%), Gaps = 33/247 (13%)

Query: 342 EAQQQFNSALNQFTDI-EAFIRMIRVYIRLDQP----IRAIDIGRNALDCYPNEVTIMT- 395
           ++ Q    A     D+ ++ +    V+           + +            E  +   
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63

Query: 396 ---EMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL 452
                    +G      +    ++          A        FY       L     + 
Sbjct: 64  AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASG------FYTQ----LLQELCTVF 113

Query: 453 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALST 512
            + L      + L +          +V     + S            ++  +A       
Sbjct: 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----ICQHCLVHLGDIA------- 162

Query: 513 SVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA 572
             Y +Q   A  +YR   Q+   N + +N LA+       +   +  + R+  +A+    
Sbjct: 163 -RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS--IAVKFPF 219

Query: 573 ADVWYNI 579
                N+
Sbjct: 220 PAASTNL 226

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 25/269 (9%), Positives = 76/269 (28%), Gaps = 14/269 (5%)

Query: 283 KYARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIRE 342
           +YA DK V + L+ + +    +  + +    ++      R             + G   +
Sbjct: 49  EYALDKKVEQDLWNHAFK---NQITTLQGQAKNRANPN-RSEVQANLSLFLEAASGFYTQ 104

Query: 343 AQQQFNSALN-QFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIF 401
             Q+  +  N          ++  +  +       +    ++          +  +  I 
Sbjct: 105 LLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIA 162

Query: 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 461
              N    +  YY+   +   +  +    + +           + +Y R + +       
Sbjct: 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222

Query: 462 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEV 521
             NL      S+  +         +      +     +   H  +  + S    +   E 
Sbjct: 223 STNLQK--ALSKALES-----RDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275

Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYS 550
               ++ LL    +N++   ++ +   + 
Sbjct: 276 LEEQFKELLFQKAFNSQQLVHVTVINLFQ 304

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 25/265 (9%), Positives = 69/265 (26%), Gaps = 23/265 (8%)

Query: 410 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 469
           S +Y +      A   ++              +     Y+++L   L  A          
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD-- 59

Query: 470 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRL 529
            ++  +   +T  +       N N ++V    +++++    ++  Y       L     +
Sbjct: 60  LWNHAFKNQITTLQGQAKNRANPNRSEV---QANLSLFLEAASGFYTQ----LLQELCTV 112

Query: 530 LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYN-------I 579
             + L      + L +          +V     + S        +  D+           
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAE 172

Query: 580 SHVAIITECSPFSFSTHTSYLFI-QGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638
           S+     +  P +   +     +     D    I     ++++      +  NL    ++
Sbjct: 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232

Query: 639 EGHIERASTYLQAAAASSPYLYETH 663
                         +       + H
Sbjct: 233 ALESRDEVKTKWGVSDFIKAFIKFH 257

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 16/162 (9%), Positives = 42/162 (25%), Gaps = 19/162 (11%)

Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-----ENAADVW 576
           +  + R+   +     +     A      Q        +++ L   L      +   D+W
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDLW 61

Query: 577 YNISHVAIIT---------ECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL 627
            +     I T           +      + S             +Q L    ++D    +
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 628 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 669
             + L ++  ++ H         ++ +          +   I
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDI 161

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 35/280 (12%), Positives = 68/280 (24%), Gaps = 20/280 (7%)

Query: 412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 471
           K Y+   +            G+          A+L +   +Q    + E +  L      
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 472 SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND-----QPEVALLFY 526
           ++Q  + ++   R L L  +   A +   +S                     P  A L  
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 527 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI------- 579
                 G         +         +  V   F  A+ L       DV   +       
Sbjct: 126 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185

Query: 580 --------SHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNN 631
                      A ++         +     +   + +  A+     AL +   +  S+ N
Sbjct: 186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 245

Query: 632 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 671
           L +     G    A  +   A                +S 
Sbjct: 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 34/273 (12%), Positives = 67/273 (24%), Gaps = 43/273 (15%)

Query: 352 NQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSV 411
           N   D           ++      A+ +   A+   P  +     +           +++
Sbjct: 14  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 412 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL---- 467
              +  L+       A+  + V+         A    R  L+     A L          
Sbjct: 74  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133

Query: 468 -----------CCFYSQQYDMVVTCFERALSLALNENAADVWYNI--------------- 501
                             +  V   F  A+ L       DV   +               
Sbjct: 134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 193

Query: 502 -----------SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 550
                       ++      +T    +Q E A+  YRR L++         NL + C   
Sbjct: 194 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 253

Query: 551 QQYDMVVTCFERALSLALNENAADVWYNISHVA 583
             +   V  F  AL+  +   +         ++
Sbjct: 254 GAHREAVEHFLEALN--MQRKSRGPRGEGGAMS 284

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 34/295 (11%), Positives = 71/295 (24%), Gaps = 36/295 (12%)

Query: 279 LNLAK-YARDKTVAKYLFEYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSL 337
             L    A ++     +       E    +   L   +             ++ + +   
Sbjct: 57  QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116

Query: 338 GLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTE- 396
                              +    R++   +     +   ++   A+   P  +    + 
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176

Query: 397 -MARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 455
            +  +F        +V  +   L            +G      +Q E A+  YRR L++ 
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236

Query: 456 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY 515
                   NL + C     +   V  F  AL+  +   +                     
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGE--------------- 279

Query: 516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE 570
                            G  +  +++ L L      Q D       R LS  L  
Sbjct: 280 ----------------GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 318

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 29/228 (12%), Positives = 58/228 (25%), Gaps = 8/228 (3%)

Query: 339 LIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMA 398
           L R  Q   + AL      +       +Y  L     A +    AL   P+   +   + 
Sbjct: 19  LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 78

Query: 399 RIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN 458
                  N   + + +  +L+ D T   A    G+  +Y  + ++A        Q    +
Sbjct: 79  IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
                 L L      +        +        +   ++            L        
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY--------LGNISEQTL 190

Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 566
            E           +  + +E    L          D     F+ A++ 
Sbjct: 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 28/207 (13%), Positives = 48/207 (23%), Gaps = 6/207 (2%)

Query: 287 DKTVAKYLFE--YLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQ 344
           D   A+ L+E   LY      A A +       A           LG      G    A 
Sbjct: 33  DDERAQLLYERGVLYDSLGLRALARN-DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91

Query: 345 QQFNSALNQFTDIEAFIRMIR-VYIRLDQPIRAIDIGRNAL--DCYPNEVTIMTEMARIF 401
           + F+S L                     +   A D        D      ++   +A   
Sbjct: 92  EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 151

Query: 402 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 461
                    +K +     ++      +     N       E           +  + +E 
Sbjct: 152 LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 211

Query: 462 FNNLALCCFYSQQYDMVVTCFERALSL 488
              L          D     F+ A++ 
Sbjct: 212 NFYLGKYYLSLGDLDSATALFKLAVAN 238

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 9/146 (6%)

Query: 432 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 491
           GV        + AL  +  +      ++ +  N+       +        F R+++   +
Sbjct: 12  GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68

Query: 492 ENAADVWYNISHVAI------LNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLAL 545
              A     + +         +  L  ++   +    + +    LQ  L+  E+  N+A 
Sbjct: 69  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128

Query: 546 CCFYSQQYDMVVTCFERALSLALNEN 571
                +++         A S+     
Sbjct: 129 MYAKKEEWKKAEEQLALATSMKSEPR 154

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 26/155 (16%)

Query: 522 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 581
           AL  +  +      ++ +  N+       +        F R+++   +   A     + +
Sbjct: 24  ALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80

Query: 582 VAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL---------HLALSIDSSHGLSQNNL 632
                         + +  +   I D + A+  L          L L           N+
Sbjct: 81  --------------YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 126

Query: 633 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 667
           A + A++   ++A   L  A +       +  ++A
Sbjct: 127 AFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 161

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 458 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND 517
           +A+         F  ++Y     C+ RA  +  N   A  + N +   +           
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRA--ITRNPLVAVYYTNRALCYL--------KMQ 52

Query: 518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
           QPE AL   RR L++   + +    L  C    + YD  +   +RA SLA  +   
Sbjct: 53  QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 12/115 (10%), Positives = 35/115 (30%), Gaps = 3/115 (2%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
           A     L    +  + +D  +  +++A    L+        N + V              
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAK--ELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 573
            +  +   R   +     A+ +  +    F  ++Y   +  + ++L+     +  
Sbjct: 62  EKA-IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 15/151 (9%), Positives = 38/151 (25%), Gaps = 11/151 (7%)

Query: 434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 493
           N     Q + AL      ++    +A L ++          ++       +++ L     
Sbjct: 5   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL----- 59

Query: 494 AADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 553
                Y      + + +       + + A       +                   SQ Y
Sbjct: 60  --FPEYLPGASQLRHLVKA--AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY 115

Query: 554 DMVVTCFERALSLALNENAADVWYNISHVAI 584
           + V     +     L +    +  + S   +
Sbjct: 116 EQVSELALQI--EELRQEKGFLANDTSFSDV 144

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 19/207 (9%), Positives = 40/207 (19%), Gaps = 46/207 (22%)

Query: 459 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQ 518
           A+L    A      ++ ++    F +A                               ++
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-----------------------AGNE 73

Query: 519 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 578
            E                   +     C          V   E A+ +  +        N
Sbjct: 74  DEA---------------GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118

Query: 579 ISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 638
                     +           +              +      +         A L+A 
Sbjct: 119 FKFELGEILENDLHDYAKAIDCYEL--------AGEWYAQDQSVALSNKCFIKCADLKAL 170

Query: 639 EGHIERASTYLQAAAASSPYLYETHYN 665
           +G    AS        SS     + ++
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWS 197

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 412 KYYKLILKRD---ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN--AELFNNLA 466
           K ++          +     A   V   YND     ++    LL  G      +    LA
Sbjct: 20  KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79

Query: 467 LCCFYSQQYDMVVTCFERALSL 488
           +  +  ++Y+  +      L  
Sbjct: 80  VGNYRLKEYEKALKYVRGLLQT 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	677
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.54
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.45
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.38
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.37
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.35
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.26
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.24
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.96
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.81
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.03
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.0
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.93
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.86
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.1
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.01
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.75
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=316.06  Aligned_cols=342  Identities=18%  Similarity=0.195  Sum_probs=292.8

Q ss_pred             ccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q psy16607        302 ENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIG  380 (677)
Q Consensus       302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~  380 (677)
                      .|++++|+..|+++++.+|. ....+..+|.++...|++++|+..+..+....+ ...............+....+....
T Consensus        46 ~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (388)
T d1w3ba_          46 CRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY  124 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            45555555666666555533 233335556666666666666666666555555 4555555555555555555555555


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHH
Q psy16607        381 RNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  460 (677)
Q Consensus       381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  460 (677)
                      .......+.........+......+....+...+.+.+...|++..++..+|..+...|++++|...++++++.+|+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  204 (388)
T d1w3ba_         125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD  204 (388)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHH
Confidence            55555555555566677777777888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHH
Q psy16607        461 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELF  540 (677)
Q Consensus       461 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  540 (677)
                      ++..+|.++...|++++|+..++++....+..  ...+..+|.++.        ..|++++|+..|+++++.+|+++.++
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYY--------EQGLIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHHhhhH--HHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999999988  999999999998        99999999999999999999999999


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        541 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       541 ~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      ..+|.++...|++++|+..+++++.  ..|.....+..++.++.                   ..|++++|+..|+++++
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~~~~~~A~~~~~~al~  333 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR-------------------EQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------TTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHH-------------------HCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999  88999999999999999                   99999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q psy16607        621 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSV  675 (677)
Q Consensus       621 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~  675 (677)
                      ++|+++.++.++|.++...|++++|+..|+++++++|++++++.++|.+|..+||
T Consensus       334 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999996

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-33  Score=286.82  Aligned_cols=349  Identities=20%  Similarity=0.173  Sum_probs=334.9

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChH
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPI  374 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~  374 (677)
                      +..+++.|++++|++.|+++++..|.+ ...+..+|.++...|++++|+..|+++++.+| +..++..+|.++...|+++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence            445677899999999999999999654 45558999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q psy16607        375 RAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  454 (677)
Q Consensus       375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  454 (677)
                      +|+..+..+.+..|.........+......+....+...........+................+....+...+.+.+..
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC
Q psy16607        455 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL  534 (677)
Q Consensus       455 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p  534 (677)
                      .|..+.++..+|.++...|++++|...+++++..+|++  ..++..+|.++.        ..|++++|+..++++....|
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~  234 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLK--------EARIFDRAVAAYLRALSLSP  234 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------TTTCTTHHHHHHHHHHHHCT
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc--HHHHHHHhhhhh--------ccccHHHHHHHHHHhHHHhh
Confidence            99999999999999999999999999999999999998  999999999998        99999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHH
Q psy16607        535 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQC  614 (677)
Q Consensus       535 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~  614 (677)
                      .....+..+|.++...|++++|+..|+++++  .+|+++.++..+|.++.                   ..|++++|+..
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~-------------------~~~~~~~A~~~  293 (388)
T d1w3ba_         235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALK-------------------EKGSVAEAEDC  293 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHH-------------------HHSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHH
Confidence            9999999999999999999999999999999  89999999999999999                   99999999999


Q ss_pred             HHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCC
Q psy16607        615 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVSVI  676 (677)
Q Consensus       615 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G~i  676 (677)
                      +++++...|.+...+..+|.++...|++++|+..|+++++++|+++.+++++|.++...|++
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  355 (388)
T d1w3ba_         294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999985

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-26  Score=232.28  Aligned_cols=273  Identities=16%  Similarity=0.118  Sum_probs=185.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      +..|..++..|++++|+..|+++++.+| +..+|..+|.++...|++++|+..|.++++++|++...+..+|.++...|+
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            4556666666666666666666666666 566666666666666666666666666666666666666666666666666


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      +++|++.+++++...|...............                   ............+...+.+.+|+..|.+++
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            6666666666666655432211100000000                   000001111223445567788888888888


Q ss_pred             hhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607        487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  566 (677)
Q Consensus       487 ~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  566 (677)
                      ..+|+...+.++..+|.++.        ..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++ 
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-  234 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFN--------LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE-  234 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHhhcccccccchhhHHHHH--------HHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH-
Confidence            88887655778888888887        889999999999999999999999999999999999999999999999998 


Q ss_pred             hhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH-----------HHHHHHHH
Q psy16607        567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL-----------SQNNLAVL  635 (677)
Q Consensus       567 ~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~-----------~~~~la~~  635 (677)
                       .+|+++.+|+.+|.++.                   ..|++++|+..|+++++++|++..           +|..++.+
T Consensus       235 -~~p~~~~a~~~lg~~~~-------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~a  294 (323)
T d1fcha_         235 -LQPGYIRSRYNLGISCI-------------------NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA  294 (323)
T ss_dssp             -HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred             -HhhccHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHH
Confidence             78889999999999888                   899999999999999988887654           45556767


Q ss_pred             HHHcCCHHHHHHH
Q psy16607        636 EAREGHIERASTY  648 (677)
Q Consensus       636 ~~~~g~~~~A~~~  648 (677)
                      +...|+.+.+...
T Consensus       295 l~~~~~~d~~~~~  307 (323)
T d1fcha_         295 LSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHTCGGGHHHH
T ss_pred             HHHcCCHHHHHHH
Confidence            7777766555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=233.05  Aligned_cols=266  Identities=12%  Similarity=0.065  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      .+..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            34555555556666666666666665566555555556665555566666666666655555555555555555555555


Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQP  519 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~  519 (677)
                      ++++|++.+++++...|............                           .....++...  .........+.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~--~~~~~~~~~~~~  152 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEG---------------------------AGGAGLGPSK--RILGSLLSDSLF  152 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC--------------------------------------------CTTHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhh---------------------------hhhcccccch--hhHHHHHHhhHH
Confidence            55555555555555555433221110000                           0000000000  000001145678


Q ss_pred             HHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccch
Q psy16607        520 EVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHT  597 (677)
Q Consensus       520 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~  597 (677)
                      .+|+..|.+++..+|.  ++.++..+|.++...|++++|+..|++++.  .+|++..+|..+|.++.             
T Consensus       153 ~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------  217 (323)
T d1fcha_         153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLA-------------  217 (323)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhccc-------------
Confidence            8999999999999886  467899999999999999999999999999  89999999999999999             


Q ss_pred             hhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH-----------HHH
Q psy16607        598 SYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH-----------YNQ  666 (677)
Q Consensus       598 ~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------~~l  666 (677)
                            ..|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++           ..+
T Consensus       218 ------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l  291 (323)
T d1fcha_         218 ------NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL  291 (323)
T ss_dssp             ------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred             ------ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHH
Confidence                  999999999999999999999999999999999999999999999999999999887643           445


Q ss_pred             HHHHHhcCC
Q psy16607        667 AVISNLVSV  675 (677)
Q Consensus       667 a~~~~~~G~  675 (677)
                      +.++..+|.
T Consensus       292 ~~al~~~~~  300 (323)
T d1fcha_         292 RLALSMLGQ  300 (323)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            666555553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-22  Score=202.31  Aligned_cols=218  Identities=9%  Similarity=0.044  Sum_probs=113.2

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy16607        388 PNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-PEVALLFYRRLLQMGLYNAELFNNLA  466 (677)
Q Consensus       388 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~la  466 (677)
                      |+..+++..+|.++.+.+.+++|++.++++++++|.+..+|..+|.++...|+ +++|+..++++++.+|++..+|..+|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            33344444455555555555555555555555555555555555555544432 45555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16607        467 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  546 (677)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  546 (677)
                      .++..+|++++|+..+.++++++|++  ..+|.++|.++.        ..|++++|+..++++++.+|.+..+|+++|.+
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n--~~a~~~~~~~~~--------~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQ--------EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHH--------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcc--hHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            55555555555555555555555554  555555555554        45555555555555555555555555555555


Q ss_pred             HHhccC------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHc
Q psy16607        547 CFYSQQ------YDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALS  620 (677)
Q Consensus       547 ~~~~g~------~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~  620 (677)
                      +...+.      +++|+..+.+++.  .+|++..+|..++.++                    .....+++...++++++
T Consensus       190 l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll--------------------~~~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         190 ISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGIL--------------------QDRGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH--------------------TTTCGGGCHHHHHHHHH
T ss_pred             HHHccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHH--------------------HhcChHHHHHHHHHHHH
Confidence            444443      3556666666666  5566666666665554                    22334555566666655


Q ss_pred             cCCCC--hHHHHHHHHHHH
Q psy16607        621 IDSSH--GLSQNNLAVLEA  637 (677)
Q Consensus       621 ~~p~~--~~~~~~la~~~~  637 (677)
                      +.|+.  +.++..++.++.
T Consensus       248 l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         248 LQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HTTTCCCHHHHHHHHHHHH
T ss_pred             hCCCcCCHHHHHHHHHHHH
Confidence            55543  333444454443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-22  Score=199.84  Aligned_cols=222  Identities=12%  Similarity=0.109  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN-MPMSVKYYKLILKRDATCMEAIACIGVNH  435 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~  435 (677)
                      .+++..++.++.+.+.+++|+..++++++++|.+..+|..+|.++...|. +++|+.+++++++.+|++..+|..+|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            45556666666666777777777777777777777777777777666653 67777777777777777777777777777


Q ss_pred             HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607        436 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY  515 (677)
Q Consensus       436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~  515 (677)
                      ..+|++++|+..++++++++|.+..+|..+|.++...|++++|+.+|+++++++|.+  ..+|+++|.++.  .+..+..
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n--~~a~~~r~~~l~--~~~~~~~  198 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRYFVIS--NTTGYND  198 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHH--HTTCSCS
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc--HHHHHHHHHHHH--Hccccch
Confidence            777777777777777777777777777777777777777777777777777777776  667777776654  1111122


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA  583 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~  583 (677)
                      .+.+++|+..+.++++.+|.+..+|+.++.++... ..+++...+++++++..++....++..++.+|
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            23356777777777777777777777777765443 35667777777777333334455555555554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=9.7e-25  Score=221.70  Aligned_cols=262  Identities=10%  Similarity=-0.050  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC--h
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEGL----------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ--P  441 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~  441 (677)
                      ++|+.+++++++.+|++..+|..++.++...          |++++|+.+++++++.+|++..+|..+|.++...++  +
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~  125 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence            4555555555555555554444444333322          224455555555555555555555555544444432  4


Q ss_pred             HHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHH
Q psy16607        442 EVALLFYRRLLQMGLYNAELF-NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPE  520 (677)
Q Consensus       442 ~~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~  520 (677)
                      ++|+..+++++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+  ..+|+.+|.++.        ..|+++
T Consensus       126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~--~~a~~~l~~~~~--------~~~~~~  195 (334)
T d1dcea1         126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLP--------QLHPQP  195 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHH--------HHSCCC
T ss_pred             HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC--HHHHHHHHHHHH--------HhcCHH
Confidence            455555555555555544443 234444444555555555555555555554  555555555554        445555


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhh
Q psy16607        521 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYL  600 (677)
Q Consensus       521 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~  600 (677)
                      +|+..+++++...|.+...+.    .+...+..+++...+.+++.  .+|.....+..++.++.                
T Consensus       196 ~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~----------------  253 (334)
T d1dcea1         196 DSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKST----------------  253 (334)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHH----------------
T ss_pred             HHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHH----------------
Confidence            554444444444443332222    22333444455555555555  44555444555555554                


Q ss_pred             HHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy16607        601 FIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  670 (677)
Q Consensus       601 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  670 (677)
                         ..|++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.+...|.+|+..+
T Consensus       254 ---~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         254 ---VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             ---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             ---HHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence               5555555555555555555555555555555555555555555555555555555555555554444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.3e-22  Score=204.01  Aligned_cols=264  Identities=11%  Similarity=-0.038  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHccCC-CHHHHHHHHHHH----------HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--h
Q psy16607        341 REAQQQFNSALNQFT-DIEAFIRMIRVY----------IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN--M  407 (677)
Q Consensus       341 ~~A~~~~~~al~~~p-~~~~~~~la~~~----------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~  407 (677)
                      ++|+..+++++..+| +..+|...+.++          ...|++.+|+.+++++++.+|++..+|..+|.++...++  +
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~  125 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence            455555555555555 444444444333          334557889999999999999999999999999888765  7


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        408 PMSVKYYKLILKRDATCMEAIA-CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  486 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  486 (677)
                      ++|+..+.+++..+|.+..++. ..|.++...+.+++|+..+++++..+|.+..+|+.+|.++...|++++|+..+++++
T Consensus       126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~  205 (334)
T d1dcea1         126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            8999999999999999888764 667888899999999999999999999999999999999999999999999999888


Q ss_pred             hhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q psy16607        487 SLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  566 (677)
Q Consensus       487 ~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  566 (677)
                      ...|..  ...+..    +.        ..+..+++...+.+++...|.+...+..++.++...+++.+|+..+.+++. 
T Consensus       206 ~~~~~~--~~~~~~----~~--------~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  270 (334)
T d1dcea1         206 NVLLKE--LELVQN----AF--------FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP-  270 (334)
T ss_dssp             HHHHHH--HHHHHH----HH--------HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred             HhHHHH--HHHHHH----HH--------HhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence            887764  333322    22        456777899999999999999999999999999999999999999999999 


Q ss_pred             hhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc
Q psy16607        567 ALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       567 ~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  639 (677)
                       .+|.+..++..+|.++.                   ..|++++|+.+|+++++++|.+...|..|+..+...
T Consensus       271 -~~p~~~~~~~~l~~~~~-------------------~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         271 -ENKWCLLTIILLMRALD-------------------PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             -TCHHHHHHHHHHHHHHC-------------------TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             -hCchHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence             89999999999999998                   999999999999999999999999999998877753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.1e-20  Score=180.56  Aligned_cols=121  Identities=10%  Similarity=0.089  Sum_probs=73.0

Q ss_pred             ChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHH
Q psy16607        372 QPIRAIDIGRNALDCYP----NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF  447 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  447 (677)
                      +.+.|+..+++++...+    ....+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            34455555555554322    23345666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        448 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       448 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      |+++++++|.++.++..+|.++...|++++|+..|+++++.+|.+
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence            666666666666666666666666666666666666666666555

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=5.3e-20  Score=178.88  Aligned_cols=226  Identities=12%  Similarity=-0.017  Sum_probs=179.7

Q ss_pred             CCHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16607        338 GLIREAQQQFNSALNQFT-----DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVK  412 (677)
Q Consensus       338 g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  412 (677)
                      ++.+.|+..+++++...+     ...+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345677777788876543     567889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        413 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       413 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      .|+++++++|++..++..+|.++...|++++|+..|+++++.+|.+......++.++...+..+.+...........+..
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            99999999999999999999999999999999999999999999999888888888888887766666666555554443


Q ss_pred             chHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch
Q psy16607        493 NAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA  572 (677)
Q Consensus       493 ~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~  572 (677)
                        .. + .+...+.    ......+..+.+...+.......|....+++.+|.++...|++++|+.+|++++.  .+|++
T Consensus       173 --~~-~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~  242 (259)
T d1xnfa_         173 --WG-W-NIVEFYL----GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN  242 (259)
T ss_dssp             --TH-H-HHHHHHT----TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred             --hh-h-hHHHHHH----HHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence              11 1 1111211    0011233455666666666677778888999999999999999999999999998  78865


Q ss_pred             H
Q psy16607        573 A  573 (677)
Q Consensus       573 ~  573 (677)
                      .
T Consensus       243 ~  243 (259)
T d1xnfa_         243 F  243 (259)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.7e-18  Score=170.49  Aligned_cols=274  Identities=12%  Similarity=0.009  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCC------H
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNE-----VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATC------M  425 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  425 (677)
                      .+.....|.++...|++++|+..++++++..|.+     ..++..+|.++...|++++|+..|++++...+..      .
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            3445555666666666666666666666666654     2355566666777777777777776666654322      3


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc---ch
Q psy16607        426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGL--------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NA  494 (677)
Q Consensus       426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  494 (677)
                      .++..++.++...|++..+...+.+++...+        .....+..+|.++...|+++.+...+.+++...+..   ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            4455666777777777777777776665321        112355667777777777777777777777655433   23


Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607        495 ADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGL-------YNAELFNNLALCCFYSQQYDMVVTCFERALSLA  567 (677)
Q Consensus       495 ~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  567 (677)
                      ..++...+..+.        ..+++.++...+.++.....       ....++..++.++...|++++|...+++++...
T Consensus       172 ~~~~~~~~~~~~--------~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         172 LQCLAMLIQCSL--------ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE  243 (366)
T ss_dssp             HHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHH--------hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence            445556666665        67777777777777664322       224467778889999999999999999988722


Q ss_pred             h--ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHcc------CCCChHHHHHHHHHHHHc
Q psy16607        568 L--NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSI------DSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       568 ~--~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~  639 (677)
                      .  .+.....+.++|.++.                   ..|++++|+..+++++..      .|....++..+|.+|...
T Consensus       244 ~~~~~~~~~~~~~la~~~~-------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  304 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQI-------------------LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA  304 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence            1  1233456778888888                   999999999999998743      345567889999999999


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q psy16607        640 GHIERASTYLQAAAASSP  657 (677)
Q Consensus       640 g~~~~A~~~~~~al~~~p  657 (677)
                      |++++|+..+++++++.+
T Consensus       305 g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         305 GRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh
Confidence            999999999999998754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.6e-17  Score=164.39  Aligned_cols=269  Identities=10%  Similarity=-0.007  Sum_probs=226.8

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhhCcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHH
Q psy16607        291 AKYLFEYLYHHENDVASAMDLAVESTKACEFRDW----WWKVQLGKCYFSLGLIREAQQQFNSALNQFT-------DIEA  359 (677)
Q Consensus       291 a~~l~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~  359 (677)
                      ...+.+.+++..|++++|+..+++++...|....    ..+..+|.++...|++++|+..|++++...+       ....
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            4556677788899999999999999999876543    3456799999999999999999999998643       3567


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcC-----CHH
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYP--------NEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDAT-----CME  426 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~  426 (677)
                      +..++.++...|++..|...+.+++...+        .....+..+|.++...|+++.+...+.+++...+.     ...
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            78899999999999999999999886532        12346778999999999999999999999987654     356


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc--chHHH
Q psy16607        427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADV  497 (677)
Q Consensus       427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~  497 (677)
                      ++...+..+...+++.++...+.++......       ...++..++.++...|++++|...+++++...+.+  .....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            7788899999999999999999998875432       23567788999999999999999999999887654  33566


Q ss_pred             HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q psy16607        498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQ------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  567 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  567 (677)
                      +..++.++.        ..|++++|+..+++++.      ..|....++..+|.++...|++++|+..+++++.+.
T Consensus       254 ~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         254 WRNIARAQI--------LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--------HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            778899988        99999999999999984      345567889999999999999999999999999854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.5e-17  Score=173.14  Aligned_cols=134  Identities=14%  Similarity=0.019  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCccc
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFST  595 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~  595 (677)
                      .+.|+.|+..+.+++..+|.+...+.++|..+.+.|++++|+..+++++.  .++  ..++.++|.++.           
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~--~~~~~~LG~l~~-----------  163 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC--QHCLVHLGDIAR-----------  163 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHHH--HHH--HHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH--HHHHHHHHHHHH-----------
Confidence            34555555555555566666666666666666666666666666666655  222  345666666666           


Q ss_pred             chhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        596 HTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       596 ~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                              ..|++++|+.+|+++++++|+++.++++||.++...|++.+|+.+|.+++.++|.++.++.||+.++..
T Consensus       164 --------~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         164 --------YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             --------HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             --------HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence                    666666666666666666666666666666666666666666666666666666666666666666544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8.1e-14  Score=138.22  Aligned_cols=190  Identities=12%  Similarity=0.083  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCH
Q psy16607        441 PEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQP  519 (677)
Q Consensus       441 ~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~  519 (677)
                      .++|..+|+++++. .|.+...|...+.++...|+++.|...|++++...|.+ ...+|...+....        ..|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-~~~~w~~~~~~~~--------~~~~~  150 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFAR--------RAEGI  150 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-THHHHHHHHHHHH--------HHHCH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH--------HcCCh
Confidence            35555666666653 45555666666666666666666666666666655544 1334555555555        55666


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchh
Q psy16607        520 EVALLFYRRLLQMGLYNAELFNNLALCCF-YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTS  598 (677)
Q Consensus       520 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~  598 (677)
                      +.|...|.++++..|.+...+...+.... ..|+.+.|..+|++++.  ..|+++..|...+..+.              
T Consensus       151 ~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~--------------  214 (308)
T d2onda1         151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLS--------------  214 (308)
T ss_dssp             HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH--------------
Confidence            66666666666666666666666665433 34566666667776666  56666666666666666              


Q ss_pred             hhHHhcCCCHHHHHHHHHHHHccCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        599 YLFIQGISDTRLAIQCLHLALSIDSSHG----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       599 ~~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                           ..|++++|...|++++...|.++    ..|..........|+.+.+..+++++.+..|+..
T Consensus       215 -----~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         215 -----HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             -----TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             -----HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence                 66777777777777766555433    3555556666666777777777777777666553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1e-14  Score=121.64  Aligned_cols=112  Identities=11%  Similarity=0.046  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      -+...|..++..|++++|+.+|+++++  .+|+++.+|.++|.++.                   .+|++++|+..|+++
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~-------------------~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYA-------------------KKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhccccccc-------------------ccccccccchhhhhH
Confidence            356689999999999999999999999  89999999999999999                   999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      ++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.+..
T Consensus        64 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999887753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.4e-16  Score=163.65  Aligned_cols=224  Identities=11%  Similarity=0.001  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy16607        342 EAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKR  420 (677)
Q Consensus       342 ~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  420 (677)
                      +|+++|++++++.| ..++++.+|.++...+++++|   |++++..+|+....+...+.+.  ...|..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            78999999999988 778899999999999999876   8899999887666543333322  22366788888887765


Q ss_pred             Cc--CCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHH
Q psy16607        421 DA--TCME-AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV  497 (677)
Q Consensus       421 ~p--~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  497 (677)
                      ..  +... ....++.+....+.|+.++..+.+++.++|.+...+.++|.++...|++++|+..+.+++..++    ..+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~  154 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC----QHC  154 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH----HHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH----HHH
Confidence            43  2222 2233456666778889999999999999999999999999999999999999999999988765    467


Q ss_pred             HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607        498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  577 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~  577 (677)
                      +..+|.++.        ..+++++|+.+|+++++++|++...++.+|.++...|++.+|+.+|.+++.  .+|..+.++.
T Consensus       155 ~~~LG~l~~--------~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~  224 (497)
T d1ya0a1         155 LVHLGDIAR--------YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAAST  224 (497)
T ss_dssp             HHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHH
T ss_pred             HHHHHHHHH--------HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHH
Confidence            888999998        899999999999999999999999999999999999999999999999998  8899999999


Q ss_pred             HHHHHHH
Q psy16607        578 NISHVAI  584 (677)
Q Consensus       578 ~l~~~~~  584 (677)
                      +++.++.
T Consensus       225 nL~~~~~  231 (497)
T d1ya0a1         225 NLQKALS  231 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.7e-14  Score=141.76  Aligned_cols=206  Identities=10%  Similarity=0.009  Sum_probs=146.1

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc----chHHHHHHH
Q psy16607        432 GVNHFYNDQPEVALLFYRRLLQMG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNI  501 (677)
Q Consensus       432 a~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l  501 (677)
                      |.+|...+++++|++.|.+++.+.      +.....+.++|.+|...|++++|+.+|++++.+.+..    ....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            455555566666666666655542      1123567778888888888888888888888776554    124567777


Q ss_pred             HHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccch---
Q psy16607        502 SHVAILNALSTSVYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA---  572 (677)
Q Consensus       502 ~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~---  572 (677)
                      |.++.       ...|++++|+..|++++++.+.      ...++..+|.++...|+|++|+..|++++.  ..+..   
T Consensus       124 ~~~~~-------~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~--~~~~~~~~  194 (290)
T d1qqea_         124 GEILE-------NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK--SSMGNRLS  194 (290)
T ss_dssp             HHHHH-------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTSSCTTT
T ss_pred             HHhHh-------hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH--hCccchhh
Confidence            77764       1469999999999999865332      245688999999999999999999999998  44332   


Q ss_pred             ----HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHH-----HHHHHHHHHH--cCC
Q psy16607        573 ----ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLS-----QNNLAVLEAR--EGH  641 (677)
Q Consensus       573 ----~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~--~g~  641 (677)
                          ...+...+.++.                   ..|++..|...++++++++|.....     ...+..++..  .+.
T Consensus       195 ~~~~~~~~~~~~~~~l-------------------~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~  255 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQL-------------------AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (290)
T ss_dssp             GGGHHHHHHHHHHHHH-------------------HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             hhhHHHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH
Confidence                345677888887                   9999999999999999999865443     3445555444  356


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHH
Q psy16607        642 IERASTYLQAAAASSPYLYETHYN  665 (677)
Q Consensus       642 ~~~A~~~~~~al~~~p~~~~~~~~  665 (677)
                      +++|+..|.++.+++|.....+..
T Consensus       256 ~~eai~~y~~~~~lD~~~~~~L~~  279 (290)
T d1qqea_         256 LSEHCKEFDNFMRLDKWKITILNK  279 (290)
T ss_dssp             HHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHH
Confidence            999999999888887654444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.8e-14  Score=140.22  Aligned_cols=171  Identities=12%  Similarity=0.059  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhccc----chH
Q psy16607        427 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFY-SQQYDMVVTCFERALSLALNE----NAA  495 (677)
Q Consensus       427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~----~~~  495 (677)
                      ++..+|.+|...|++++|+..|++++.+.+..      ..++..+|.++.. .|++++|+.+|++++.+.+..    ...
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            44445555555555555555555555443222      3456666776654 588888888888887765432    135


Q ss_pred             HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q psy16607        496 DVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNA-------ELFNNLALCCFYSQQYDMVVTCFERALSLAL  568 (677)
Q Consensus       496 ~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  568 (677)
                      .++.++|.++.        ..|++++|+..|++++...+...       ..+...+.++...++++.|...++++++  .
T Consensus       159 ~~~~~la~~~~--------~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~  228 (290)
T d1qqea_         159 KCFIKCADLKA--------LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--E  228 (290)
T ss_dssp             HHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C
T ss_pred             hHHHHHHHHHH--------HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--h
Confidence            66888999998        99999999999999998877653       4567889999999999999999999998  6


Q ss_pred             ccchHH-----HHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCC
Q psy16607        569 NENAAD-----VWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSS  624 (677)
Q Consensus       569 ~p~~~~-----~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~  624 (677)
                      +|....     ....+..++.                 ....+.+++|+..|+++.+++|-
T Consensus       229 ~~~~~~sre~~~l~~l~~a~~-----------------~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         229 DPNFADSRESNFLKSLIDAVN-----------------EGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             ---------HHHHHHHHHHHH-----------------TTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             CCCccchHHHHHHHHHHHHHH-----------------hcCHHHHHHHHHHHHHHhhcCHH
Confidence            665433     3344444443                 01245699999999988877653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.7e-13  Score=135.77  Aligned_cols=223  Identities=13%  Similarity=0.022  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------cCChhHHHHHHHHHHHh-CcCCHHHHHHHHHHHHhC
Q psy16607        374 IRAIDIGRNALDCYPNEVTIMTEMARIFEG--------------LNNMPMSVKYYKLILKR-DATCMEAIACIGVNHFYN  438 (677)
Q Consensus       374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~  438 (677)
                      +.+..+|++++...|.++.+|...+..+..              .+..++|...|++++.. .|.+...|..++.++...
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            345556666666666666666655544322              23457788888888874 677888888888888889


Q ss_pred             CChHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCC
Q psy16607        439 DQPEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYND  517 (677)
Q Consensus       439 g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~  517 (677)
                      |+++.|..+|+++++..|.+. .+|...+......|+++.|..+|++++...|.+  ...+...+....       ...|
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~--~~~~~~~a~~e~-------~~~~  183 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEY-------YCSK  183 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHH-------HTSC
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH-------Hhcc
Confidence            999999999999988888664 578888888888899999999999999888887  677777776543       1467


Q ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhcCCCCc
Q psy16607        518 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       518 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      +.+.|...|++++...|.++..|...+..+...|+++.|..+|++++.  ..|.    ....|........         
T Consensus       184 ~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~--~~~~~~~~~~~iw~~~~~fE~---------  252 (308)
T d2onda1         184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFES---------  252 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--SSSSCGGGCHHHHHHHHHHHH---------
T ss_pred             CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHH---------
Confidence            889999999999999999999999999999999999999999999988  4432    2346666666655         


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHccCCCCh
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALSIDSSHG  626 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~  626 (677)
                                ..|+.+.+..+++++.+..|...
T Consensus       253 ----------~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         253 ----------NIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             ----------HHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             ----------HcCCHHHHHHHHHHHHHHCcccc
Confidence                      78999999999999988887664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-14  Score=117.93  Aligned_cols=109  Identities=9%  Similarity=-0.011  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      +...|..++..|++++|+..|+++++.+|.++.+|..+|.++..+|++++|+..|.++++++|.++.+|+.+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALC  468 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~  468 (677)
                      ++++|+..|+++++.+|+++.++..++.+
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            66666666666666666666655555544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.6e-14  Score=128.97  Aligned_cols=144  Identities=13%  Similarity=0.050  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16607        329 QLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMP  408 (677)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  408 (677)
                      ..|..+...|+|++|+..|.++  .++++.+++++|.+|..+|++++|+..|+++++++|+++.+++++|.++.++|+++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence            3455555555555555555442  12244555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy16607        409 MSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL  488 (677)
Q Consensus       409 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  488 (677)
                      +|+..|++++...+.+...      .+...|            +.......++++++|.++...|++++|++.+.+++.+
T Consensus        88 ~A~~~~~kAl~~~~~n~~~------~~~~~~------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLI------DYKILG------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEE------ECGGGT------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccCchH------HHHHhh------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            5555555555443322100      000000            0000011356677788888888888888888888777


Q ss_pred             hccc
Q psy16607        489 ALNE  492 (677)
Q Consensus       489 ~p~~  492 (677)
                      .|+.
T Consensus       150 ~~~~  153 (192)
T d1hh8a_         150 KSEP  153 (192)
T ss_dssp             CCSG
T ss_pred             CCCc
Confidence            7664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.2e-14  Score=126.94  Aligned_cols=142  Identities=15%  Similarity=0.094  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHH
Q psy16607        498 WYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  577 (677)
Q Consensus       498 ~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~  577 (677)
                      +++.|..+.        ..|++++|++.|.+   ..+.++.+|+++|.++..+|++++|+.+|+++++  .+|+++.+|+
T Consensus         8 l~~~g~~~~--------~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~   74 (192)
T d1hh8a_           8 LWNEGVLAA--------DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYF   74 (192)
T ss_dssp             HHHHHHHHH--------HTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred             HHHHHHHHH--------HCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHH
Confidence            335677777        89999999999986   4667889999999999999999999999999999  8999999999


Q ss_pred             HHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC----------------hHHHHHHHHHHHHcCC
Q psy16607        578 NISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH----------------GLSQNNLAVLEAREGH  641 (677)
Q Consensus       578 ~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~  641 (677)
                      ++|.++.                   ++|++++|+..|++++...+.+                .++++++|.++...|+
T Consensus        75 ~~g~~~~-------------------~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~  135 (192)
T d1hh8a_          75 QRGMLYY-------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE  135 (192)
T ss_dssp             HHHHHHH-------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHH-------------------hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC
Confidence            9999999                   9999999999999999865543                3678999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy16607        642 IERASTYLQAAAASSPYLYETHYNQAVISN  671 (677)
Q Consensus       642 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~  671 (677)
                      +++|++.|++++++.|+........+....
T Consensus       136 ~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~  165 (192)
T d1hh8a_         136 WKKAEEQLALATSMKSEPRHSKIDKAMECV  165 (192)
T ss_dssp             HHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence            999999999999999987666665554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-13  Score=122.00  Aligned_cols=124  Identities=9%  Similarity=0.080  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      ..+...|..+++.|+|++|+..|+++++.+|++..+|..+|.++..+|++++|+..|+++++++|.+..++..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCCHHHHHHH
Q psy16607        438 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY--SQQYDMVVTC  481 (677)
Q Consensus       438 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  481 (677)
                      +|++++|+..+++++.+.|+++.++..++.+...  .+.+++|+..
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999988887766533  3445555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.2e-14  Score=123.69  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      +...|..+++.|+|++|+.+|+++++  .+|++..+|.++|.++.                   .+|++++|+..|++++
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~-------------------~~~~~~~A~~~~~kal   71 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYL-------------------RTECYGYALGDATRAI   71 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHH-------------------hccccchHHHHHHHHH
Confidence            33455555566666666666666665  55666666666666555                   5666666666666666


Q ss_pred             ccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy16607        620 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  669 (677)
Q Consensus       620 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  669 (677)
                      +++|++..+|..+|.++..+|++++|+..|++++.++|++..++..++.+
T Consensus        72 ~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            66666666666666666666666666666666666666665555555444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=8.7e-14  Score=128.48  Aligned_cols=104  Identities=17%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCL  615 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~  615 (677)
                      ++..+...|..+++.|+|++|+..|++++.  .+|.++.+|.++|.+|.                   ..|++++|+..|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~-------------------~~~~~~~Ai~~~   61 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYL-------------------KMQQPEQALADC   61 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHH-------------------HTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHh-------------------hhhhhhhhhHHH
Confidence            345566788888888888888888888888  78888888888888888                   888888888888


Q ss_pred             HHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy16607        616 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  660 (677)
Q Consensus       616 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  660 (677)
                      +++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++.
T Consensus        62 ~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            888888888888888888888888888888888888888877544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.46  E-value=2.3e-11  Score=117.29  Aligned_cols=231  Identities=11%  Similarity=0.094  Sum_probs=146.5

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHH
Q psy16607        390 EVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNL  465 (677)
Q Consensus       390 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l  465 (677)
                      ||.+++.+|..+...+++++|+++|+++.+.  .+..+++.||.+|..    ..++..|..++..+....  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            3456666666666666666666666666543  355666666666665    445666666666655443  55556666


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHH
Q psy16607        466 ALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFN  541 (677)
Q Consensus       466 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  541 (677)
                      |.++..    ..+.+.|...++++....+    ..+...++..+..    ..........+...+.+...  +.+...+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~l~~~~~~----~~~~~~~~~~a~~~~~~~~~--~~~~~~~~  146 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY----AEGCASLGGIYHD----GKVVTRDFKKAVEYFTKACD--LNDGDGCT  146 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH----CSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh----hhHHHhhcccccC----CCcccchhHHHHHHhhhhhc--ccccchhh
Confidence            665554    3456666666666665443    3344445544430    01124455666666666544  34556677


Q ss_pred             HHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHH
Q psy16607        542 NLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQ  613 (677)
Q Consensus       542 ~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~  613 (677)
                      .+|.++..    ..+...+..+++.+.+    ..++.+.+++|.++.                   .    ..++++|+.
T Consensus       147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~-------------------~g~~~~~d~~~A~~  203 (265)
T d1ouva_         147 ILGSLYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYH-------------------HGEGATKNFKEALA  203 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH-------------------HTCSSCCCHHHHHH
T ss_pred             hhhhhhccCCCcccccccchhhhhcccc----ccccccccchhhhcc-------------------cCcccccchhhhhh
Confidence            77777775    3455667777776654    567788888888775                   3    567888888


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q psy16607        614 CLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       614 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  659 (677)
                      +|+++.+.  .++.++++||.+|..    ..++++|+.+|+++.+..+..
T Consensus       204 ~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         204 RYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             hHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            88888776  467888888888875    347888888888888776544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.2e-13  Score=127.48  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q psy16607        355 TDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN  434 (677)
Q Consensus       355 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  434 (677)
                      |+...+...|..++..|++++|+..|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34556666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCH
Q psy16607        435 HFYNDQPEVALLFYRRLLQMGLYNA  459 (677)
Q Consensus       435 ~~~~g~~~~A~~~~~~al~~~~~~~  459 (677)
                      |..+|++++|+..|++++.++|+..
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccH
Confidence            7777777777777777777665443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-12  Score=113.90  Aligned_cols=117  Identities=14%  Similarity=0.114  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALN-------------ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG  604 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~  604 (677)
                      ..+...|..++..|+|++|+..|++++.....             +-...++.++|.||.                   +
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-------------------k   74 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-------------------K   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-------------------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-------------------h
Confidence            45667889999999999999999999884211             112355778999998                   9


Q ss_pred             CCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        605 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       605 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      .|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999886543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=7.3e-12  Score=111.67  Aligned_cols=115  Identities=20%  Similarity=0.172  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHh--------------hccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLA--------------LNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGI  605 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~--------------~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~  605 (677)
                      +...|..++..|+|.+|+..|.+++...              .+|....++.++|.++.                   ++
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-------------------~~   90 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-------------------KM   90 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-------------------HT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-------------------hh
Confidence            3456777778888888888887777531              34667778999999999                   99


Q ss_pred             CCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        606 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       606 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      |++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...++.+...+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-12  Score=105.88  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=94.2

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCC---CHHHHHHHHHHH
Q psy16607        542 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGIS---DTRLAIQCLHLA  618 (677)
Q Consensus       542 ~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g---~~~~A~~~~~~a  618 (677)
                      .++..+...+++++|.+.|++++.  .+|+++.+++++|.++.                   +.+   ++++|+..|+++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~-------------------~s~~~~d~~~Ai~~l~~~   62 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLV-------------------RTRYNDDIRKGIVLLEEL   62 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHT-------------------TSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH-------------------HhcchHHHHHHHHHHHHH
Confidence            466777888899999999999998  88999999999999886                   644   456799999999


Q ss_pred             HccCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        619 LSIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       619 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      +..+|.+  ..+++++|.+|...|++++|+.+|+++++++|++..+...++.+..++
T Consensus        63 l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9887754  458899999999999999999999999999999999988888776554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.2e-12  Score=110.92  Aligned_cols=132  Identities=15%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFT-DIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNN  406 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  406 (677)
                      ...|..++..|+|++|+..|++++...| ....             ...-......      -...++.++|.+|.+.|+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~y~k~~~   77 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQA------LRLASHLNLAMCHLKLQA   77 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHHH------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc-------------chHHHhhhch------hHHHHHHHHHHHHHhhhh
Confidence            4566667777777777777777666544 1000             0000000000      012356678888888888


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy16607        407 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  478 (677)
Q Consensus       407 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  478 (677)
                      +++|+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus        78 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          78 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888887766655544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=7.4e-12  Score=109.41  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcc--------------chHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        538 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE--------------NAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       538 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p--------------~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      ..+...|..+++.|+|.+|+..|++++......              ....++.++|.+|.                   
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-------------------   78 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-------------------   78 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-------------------
Confidence            345567888888888888888888888632110              11246778999998                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      ++|++++|+..++++++++|.+..+|+++|.++..+|++++|+..|+++++++|++.++...+..+..++.
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998876653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.36  E-value=1.9e-10  Score=110.59  Aligned_cols=227  Identities=12%  Similarity=0.128  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCcCCHHHHHHHH
Q psy16607        357 IEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIG  432 (677)
Q Consensus       357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  432 (677)
                      +.+++.+|..+...+++.+|+++|+++.+.  .+..+++.+|.+|..    ..++..|..+++.+....  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            455566666666666666666666666543  345566666666655    445666666666554432  445555555


Q ss_pred             HHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q psy16607        433 VNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHV  504 (677)
Q Consensus       433 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  504 (677)
                      .++..    ..+.+.|...++++....  ...+...++..+..    ......+...+.+....  .+  ...++.++..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--ND--GDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc--cc--cchhhhhhhh
Confidence            55543    245555666666655543  33444445544443    23345555555554432  22  5556666666


Q ss_pred             HHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy16607        505 AILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNIS  580 (677)
Q Consensus       505 ~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~  580 (677)
                      +...    .....+...+..+++.+.+  +.++.+++.+|.++..    ..++++|+.+|+++.+    .+++.+.++||
T Consensus       152 ~~~~----~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~----~g~~~a~~~LG  221 (265)
T d1ouva_         152 YDAG----RGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE----LENGGGCFNLG  221 (265)
T ss_dssp             HHHT----SSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred             hccC----CCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhc----ccCHHHHHHHH
Confidence            5410    1124455666666666554  3456666777766665    4567777777777765    24566667777


Q ss_pred             HHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccC
Q psy16607        581 HVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSID  622 (677)
Q Consensus       581 ~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~  622 (677)
                      .+|.                   .    ..++++|+++|+++....
T Consensus       222 ~~y~-------------------~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         222 AMQY-------------------NGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHH-------------------TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHH-------------------cCCCCccCHHHHHHHHHHHHHCc
Confidence            7664                   3    336667777777776654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.36  E-value=2.6e-12  Score=105.69  Aligned_cols=94  Identities=18%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        539 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       539 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      .++.+|.++.+.|++++|+..|++++.  .+|+++.+|..+|.++.                   ..|++++|+.+|+++
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~-------------------~~~~~~~A~~~~~~a   76 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQA-------------------ENEKDGLAIIALNHA   76 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhh-------------------hhhhHHHhhcccccc
Confidence            457899999999999999999999999  89999999999999999                   999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16607        619 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA  653 (677)
Q Consensus       619 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  653 (677)
                      ++++|+++.+|..+|.+|...|++++|++.+++.+
T Consensus        77 l~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          77 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999876

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.35  E-value=3.9e-12  Score=104.58  Aligned_cols=93  Identities=12%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q psy16607        394 MTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  473 (677)
Q Consensus       394 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  473 (677)
                      ++.+|..+.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|.++.++..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHH
Q psy16607        474 QYDMVVTCFERAL  486 (677)
Q Consensus       474 ~~~~A~~~~~~al  486 (677)
                      ++++|++++++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            6666666666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.9e-12  Score=107.72  Aligned_cols=104  Identities=8%  Similarity=0.044  Sum_probs=93.3

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhcC
Q psy16607        515 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLALNE--NAADVWYNISHVAIITECS  589 (677)
Q Consensus       515 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~p--~~~~~~~~l~~~~~~~~~~  589 (677)
                      ..+++++|.+.|++++..+|.++.+++++|.++.+.+   ++++|+..|++++.  .+|  ....+|+++|.+|.     
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~--~~~~~~~~~~~~~Lg~~y~-----   83 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNY-----   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHH-----
Confidence            7789999999999999999999999999999998754   55679999999998  554  44679999999999     


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHc
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  639 (677)
                                    ..|++++|+.+|+++++++|++..+...++.+..+.
T Consensus        84 --------------~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 --------------RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             --------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --------------HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence                          999999999999999999999999998888776554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.32  E-value=4.6e-11  Score=106.11  Aligned_cols=145  Identities=14%  Similarity=0.195  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL  539 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  539 (677)
                      ..+...|..++..|+|.+|+..|++++...+...                      ....+...       ...+....+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~----------------------~~~~~~~~-------~~~~~~~~~   66 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY----------------------GLSEKESK-------ASESFLLAA   66 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC----------------------SCCHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh----------------------ccchhhhh-------hcchhHHHH
Confidence            4466678888888888888888888877654430                      00000000       000111345


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLAL  619 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al  619 (677)
                      +.++|.||..+|++++|+..+++++.  .+|++..+++.+|.++.                   .+|++++|+..|++++
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~-------------------~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQL-------------------LMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhh--cccchHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHH
Confidence            77889999999999999999999998  88999999999999988                   9999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q psy16607        620 SIDSSHGLSQNNLAVLEAREGHIE-RASTYLQAAAA  654 (677)
Q Consensus       620 ~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~  654 (677)
                      .++|+++.++..++.+....+.+. .....|.++++
T Consensus       126 ~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         126 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            999999998888888887776554 34555555544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.31  E-value=1.5e-11  Score=109.30  Aligned_cols=118  Identities=13%  Similarity=0.134  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHhhcCCCCcccchhhhHHh
Q psy16607        537 AELFNNLALCCFYSQQYDMVVTCFERALSLALN-------------ENAADVWYNISHVAIITECSPFSFSTHTSYLFIQ  603 (677)
Q Consensus       537 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~  603 (677)
                      +..+...|..++..|+|.+|+..|++++.....             +....++.++|.||.                   
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-------------------   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-------------------   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-------------------
Confidence            345667899999999999999999999874211             112355778999998                   


Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLV  673 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  673 (677)
                      .+|++++|+..+++++.++|++..+++++|.++..+|++++|+..|+++++++|++..+...++.+...+
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998886544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.29  E-value=2.3e-11  Score=106.19  Aligned_cols=128  Identities=20%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      ...|..++..|+|.+|+..|++++...+...            ...+.........+     ...++.++|.+|.++|++
T Consensus        21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~Nla~~~~~l~~~   83 (153)
T d2fbna1          21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTE------------EWDDQILLDKKKNI-----EISCNLNLATCYNKNKDY   83 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT------------TCCCHHHHHHHHHH-----HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcchh------------hhhhHHHHHhhhhH-----HHHHHhhHHHHHHHhccc
Confidence            4566777777777777777777765433000            00000000000000     123455677777777777


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      ++|++.++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..++
T Consensus        84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777766666666554433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=2e-11  Score=108.77  Aligned_cols=134  Identities=10%  Similarity=0.033  Sum_probs=104.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16607        328 VQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNM  407 (677)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  407 (677)
                      ...|..++..|+|++|+..|.++++..+.                 ..+...........|....++.++|.++.++|++
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~   93 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW   93 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhh-----------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhccc
Confidence            56788889999999999999888754221                 1111112233445566777888899999999999


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy16607        408 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  478 (677)
Q Consensus       408 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  478 (677)
                      ++|+..|.++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus        94 ~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          94 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888888887766555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.3e-11  Score=101.57  Aligned_cols=103  Identities=15%  Similarity=0.261  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q psy16607        426 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA  505 (677)
Q Consensus       426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  505 (677)
                      ..+..+|..++..|+|++|+.+|.++++++|.++.++.++|.+|..+|++++|+..++++++++|.+  ...+..++.++
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~a~~~   82 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence            3456788888888888888888888888888888888888888888888888888888888888876  55555555444


Q ss_pred             HHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy16607        506 ILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  565 (677)
Q Consensus       506 ~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  565 (677)
                      .                                   .+|.++...+++++|+.+|++++.
T Consensus        83 ~-----------------------------------~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          83 A-----------------------------------RIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             H-----------------------------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             H-----------------------------------HHHHHHHHhCCHHHHHHHHHHHHh
Confidence            3                                   566777777777777777777766

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.5e-11  Score=101.46  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q psy16607        360 FIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND  439 (677)
Q Consensus       360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  439 (677)
                      +..+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|.+...+..++.      
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~------   80 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK------   80 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH------
Confidence            34556666666666666666666666666666666666666666666666666666666666554333222222      


Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  491 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  491 (677)
                                           ++..+|.++...+++++|+.+|++++...++
T Consensus        81 ---------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          81 ---------------------AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             ---------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ---------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence                                 2334555555566666666666666655444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=7.4e-12  Score=108.08  Aligned_cols=114  Identities=13%  Similarity=-0.009  Sum_probs=81.4

Q ss_pred             HhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChH
Q psy16607        548 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGL  627 (677)
Q Consensus       548 ~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~  627 (677)
                      .+++.|++|+..|+++++  .+|+++.+++++|.++.......         ......+.+++|+..|+++++++|+++.
T Consensus         8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~---------~~~e~~~~~~~Ai~~~~kAl~l~P~~~~   76 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFH---------SISDAKQMIQEAITKFEEALLIDPKKDE   76 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHS---------CHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhh---------hhhHHHHHHHHHHHHHHHHHHhcchhhH
Confidence            344455555555555555  55555555555555543000000         0001345568999999999999999999


Q ss_pred             HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        628 SQNNLAVLEAREGH-----------IERASTYLQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       628 ~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      +|+++|.+|..+|+           +++|..+|+++++++|++..++..|+.+...
T Consensus        77 a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          77 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            99999999988764           7999999999999999999999999987654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=9.8e-12  Score=107.30  Aligned_cols=105  Identities=15%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        368 IRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGL----------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      .+++.+++|+..|+++++++|+++++++.+|.++...          +.+++|+..|+++++++|++..+++++|.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            3445566666666666666666666666666665533          334567777777777777777777777777665


Q ss_pred             CC-----------ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q psy16607        438 ND-----------QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  472 (677)
Q Consensus       438 ~g-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  472 (677)
                      .|           .+++|+++|++++.++|++...+..++.+....
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            54           256777777777777777777776666665433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.6e-10  Score=88.64  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCC-------hHHHHHHHHHHHHcCCHHHH
Q psy16607        573 ADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHIERA  645 (677)
Q Consensus       573 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A  645 (677)
                      ++-.+.+|.++.                   +.|+|++|+..|++++++.|.+       ..++.++|.++.+.|++++|
T Consensus         5 addc~~lG~~~~-------------------~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A   65 (95)
T d1tjca_           5 AEDSFELGKVAY-------------------TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA   65 (95)
T ss_dssp             HHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHH
Confidence            345678888888                   9999999999999999875543       57899999999999999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q psy16607        646 STYLQAAAASSPYLYETHYNQAVISNLVS  674 (677)
Q Consensus       646 ~~~~~~al~~~p~~~~~~~~la~~~~~~G  674 (677)
                      +.+|+++++++|+++.++.|++.+...++
T Consensus        66 ~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          66 LLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999877654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2e-09  Score=84.85  Aligned_cols=85  Identities=20%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHH
Q psy16607        536 NAELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRL  610 (677)
Q Consensus       536 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~  610 (677)
                      +++.++.+|.++++.|+|++|+.+|++++++..     .++...++.++|.++.                   +.|++++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-------------------~~g~~~~   64 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-------------------QQGDLDK   64 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-------------------HTTCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-------------------hcCChHH
Confidence            356688999999999999999999999998432     1244788999999999                   9999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHHc
Q psy16607        611 AIQCLHLALSIDSSHGLSQNNLAVLEARE  639 (677)
Q Consensus       611 A~~~~~~al~~~p~~~~~~~~la~~~~~~  639 (677)
                      |+.+|+++++++|+++.++.+++.+...+
T Consensus        65 A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          65 ALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998776544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.93  E-value=1.7e-09  Score=94.38  Aligned_cols=99  Identities=13%  Similarity=0.012  Sum_probs=82.3

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHhhc-c---------chHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHH
Q psy16607        542 NLALCCFYSQQYDMVVTCFERALSLALN-E---------NAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLA  611 (677)
Q Consensus       542 ~la~~~~~~g~~~~A~~~~~~al~~~~~-p---------~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A  611 (677)
                      ..|..++..|+|++|+..|++++++..+ |         ....+|.++|.+|.                   .+|++++|
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-------------------~lg~~~~A   74 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-------------------GLRSFDEA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-------------------HTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-------------------HcCccchh
Confidence            3477888999999999999999984321 1         13467889999999                   99999999


Q ss_pred             HHHHHHHHccCCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16607        612 IQCLHLALSIDSS-----------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  659 (677)
Q Consensus       612 ~~~~~~al~~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  659 (677)
                      +..+++++.+.|.           ...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus        75 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          75 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            9999999976442           13468999999999999999999999999987654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.82  E-value=3.7e-09  Score=100.28  Aligned_cols=129  Identities=9%  Similarity=-0.075  Sum_probs=109.4

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCc
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSF  593 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~  593 (677)
                      +..|++++|+..|+++++.+|.+...+..++.++...|++++|+..|+++++  .+|++...+..++.++.         
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~---------   75 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVK---------   75 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH---------
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH---------
Confidence            4889999999999999999999999999999999999999999999999999  89999999999998876         


Q ss_pred             ccchhhhHHhcCCCHHHHHHHHHHHHc-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q psy16607        594 STHTSYLFIQGISDTRLAIQCLHLALS-IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  663 (677)
Q Consensus       594 ~~~~~~~~l~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  663 (677)
                                ..+..+++...+.+... ..|.....+...+.++...|++++|.+.++++.+..|..+..+
T Consensus        76 ----------a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          76 ----------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             ----------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             ----------hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence                      55555555444333222 2344556677789999999999999999999999999886544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.81  E-value=4.2e-09  Score=91.79  Aligned_cols=95  Identities=9%  Similarity=-0.132  Sum_probs=67.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhCcCC------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--------
Q psy16607        398 ARIFEGLNNMPMSVKYYKLILKRDATC------------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY--------  457 (677)
Q Consensus       398 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------  457 (677)
                      |..++..|+|++|+..|++++++.|..            ..++.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            555555566666666666666655432            345667777777777777777777777765321        


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        458 ---NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       458 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                         ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence               23468899999999999999999999999987764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.75  E-value=5.7e-09  Score=98.98  Aligned_cols=128  Identities=8%  Similarity=-0.088  Sum_probs=101.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHH
Q psy16607        365 RVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVA  444 (677)
Q Consensus       365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  444 (677)
                      .-.+..|++++|+..++++++.+|++..++..++.+++..|++++|+..|+++++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34566789999999999999999999999999999999999999999999999999999888888888887766655554


Q ss_pred             HHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Q psy16607        445 LLFYRRLLQ-MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  492 (677)
Q Consensus       445 ~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  492 (677)
                      ...+.+... ..|.....+...+.++...|++++|...++++.+..|..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            433332222 234455667777888999999999999999999888775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=1.3e-07  Score=83.73  Aligned_cols=116  Identities=10%  Similarity=-0.051  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q psy16607        358 EAFIRMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY  437 (677)
Q Consensus       358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  437 (677)
                      +.+...|......|++++|+..|.+++.+.+.......         ....   -.......+.+....++..++.++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~---w~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQ---FVEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTST---THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666665554321100         0000   01111222333345566666666666


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        438 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  485 (677)
Q Consensus       438 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  485 (677)
                      .|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=1.3e-07  Score=83.74  Aligned_cols=116  Identities=8%  Similarity=-0.091  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHH
Q psy16607        460 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAEL  539 (677)
Q Consensus       460 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  539 (677)
                      ..+...|......|++++|+..|.+++.+.+.+....  .               ..+.+-     ......+.+....+
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--~---------------~~~~w~-----~~~r~~l~~~~~~a   69 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--L---------------RDFQFV-----EPFATALVEDKVLA   69 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--G---------------TTSTTH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--C---------------cchHHH-----HHHHHHHHHHHHHH
Confidence            4566677777788888888888888887776551100  0               011110     11111222334567


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhcCCCHHHHHHHHHHH
Q psy16607        540 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQGISDTRLAIQCLHLA  618 (677)
Q Consensus       540 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~A~~~~~~a  618 (677)
                      +..++.++...|++++|+.++++++.  .+|.+..+|..++.++.                   ..|++.+|+..|+++
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~-------------------~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYY-------------------LSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH-------------------TTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHH-------------------HhcCHHHHHHHHHHH
Confidence            77888888888888888888888888  78888888888888887                   888888888888877

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=2.1e-05  Score=62.74  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccchhhhHHhcC---CCHHHHHHHHHHHHccCCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q psy16607        573 ADVWYNISHVAIITECSPFSFSTHTSYLFIQGI---SDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHIERASTY  648 (677)
Q Consensus       573 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~---g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~  648 (677)
                      ....++.|.++.                   +.   .+.++|+..++.++..+|.+ .+.++.||..|.++|++++|+.+
T Consensus        35 ~qt~F~YAw~Lv-------------------~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~   95 (124)
T d2pqrb1          35 IQSRFNYAWGLI-------------------KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY   95 (124)
T ss_dssp             HHHHHHHHHHHH-------------------HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cchHHHHHHHHH-------------------cCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            567778887776                   54   44579999999999999876 48999999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHh
Q psy16607        649 LQAAAASSPYLYETHYNQAVISNL  672 (677)
Q Consensus       649 ~~~al~~~p~~~~~~~~la~~~~~  672 (677)
                      ++++++++|++..+....-.+..+
T Consensus        96 ~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          96 VDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCcHHHHHHHHHHHHH
Confidence            999999999999998776666544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.00  E-value=4.5e-05  Score=63.32  Aligned_cols=116  Identities=11%  Similarity=-0.033  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccc
Q psy16607        517 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTH  596 (677)
Q Consensus       517 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~  596 (677)
                      .++++|+.+|+++.+..  ++.+++.++.  ....++++|+.+|+++.+    .+++.+.+.+|.+|..           
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~----~g~~~a~~~Lg~~y~~-----------   67 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACE----LNSGNGCRFLGDFYEN-----------   67 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH-----------
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhc----ccchhhhhhHHHhhhh-----------
Confidence            47889999999998775  4556666664  345689999999999986    4678899999998860           


Q ss_pred             hhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q psy16607        597 TSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSP  657 (677)
Q Consensus       597 ~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  657 (677)
                          -.....++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+...
T Consensus        68 ----g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          68 ----GKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             ----CSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ----ccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence                000256799999999999875  578899999999987    5689999999999988764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=6.4e-05  Score=59.86  Aligned_cols=73  Identities=8%  Similarity=0.041  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHH
Q psy16607        356 DIEAFIRMIRVYIRLD---QPIRAIDIGRNALDCYPNE-VTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAI  428 (677)
Q Consensus       356 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  428 (677)
                      ...+.+..|.++.+..   +.++++.+++.+++.+|.+ .+.++.+|..|.++|+|++|..+++++++++|++..+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            4445555555554432   2335555555555555543 24555555555555555555555555555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.86  E-value=8.4e-05  Score=61.56  Aligned_cols=111  Identities=7%  Similarity=0.053  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh---
Q psy16607        473 QQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY---  549 (677)
Q Consensus       473 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---  549 (677)
                      .++++|+.+|+++.+...    ..+.+.++..          ...+.++|+.+|+++.+.  .++.+.+.+|.+|..   
T Consensus         7 kd~~~A~~~~~kaa~~g~----~~a~~~l~~~----------~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~   70 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE----MFGCLSLVSN----------SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY   70 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC----TTHHHHHHTC----------TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred             cCHHHHHHHHHHHHHCCC----hhhhhhhccc----------cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccc
Confidence            367788888888876642    4445555532          457889999999998875  578889999999876   


Q ss_pred             -ccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCCcccchhhhHHhc----CCCHHHHHHHHHHHHccC
Q psy16607        550 -SQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECSPFSFSTHTSYLFIQG----ISDTRLAIQCLHLALSID  622 (677)
Q Consensus       550 -~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~----~g~~~~A~~~~~~al~~~  622 (677)
                       ..++++|+.+|+++.+    ..++.+.+.+|.+|.                   .    ..++++|+.+|+++.+..
T Consensus        71 ~~~d~~~A~~~~~~aa~----~g~~~a~~~Lg~~y~-------------------~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          71 VKKDLRKAAQYYSKACG----LNDQDGCLILGYKQY-------------------AGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH-------------------HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHhhhhc----cCcchHHHHHHHHHH-------------------cCCccCCCHHHHHHHHHHHHHCC
Confidence             4678999999999987    467788889999886                   4    468999999999998764

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.17  Score=50.43  Aligned_cols=309  Identities=9%  Similarity=-0.060  Sum_probs=158.6

Q ss_pred             HHHHhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-H---HHHHHHHHHHHHcC
Q psy16607        296 EYLYHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTD-I---EAFIRMIRVYIRLD  371 (677)
Q Consensus       296 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~la~~~~~~g  371 (677)
                      ..-.+..|++.++..+.... +..|- .+++.+.............+.    ...++..|+ +   .........+.+.+
T Consensus        13 a~~a~~~~~~~~~~~~~~~L-~dypL-~pYl~~~~l~~~~~~~~~~~i----~~Fl~~~p~~P~~~~lr~~~l~~L~~~~   86 (450)
T d1qsaa1          13 IKQAWDNRQMDVVEQMMPGL-KDYPL-YPYLEYRQITDDLMNQPAVTV----TNFVRANPTLPPARTLQSRFVNELARRE   86 (450)
T ss_dssp             HHHHHHTTCHHHHHHHSGGG-TTSTT-HHHHHHHHHHHTGGGCCHHHH----HHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHhhh-cCCCC-HHHHHHHHHHhccccCCHHHH----HHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence            33355578888777766665 33331 112111111111223344443    334444552 2   22233334455667


Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHH------------------
Q psy16607        372 QPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV------------------  433 (677)
Q Consensus       372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------------  433 (677)
                      ++...+..+    ...|.+....+..+.+....|+..+|...+..+.......+.....+-.                  
T Consensus        87 ~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~  162 (450)
T d1qsaa1          87 DWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIR  162 (450)
T ss_dssp             CHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            766544433    3456777777788888888888888888777766554433333222222                  


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccc
Q psy16607        434 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTS  513 (677)
Q Consensus       434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~  513 (677)
                      .....|++..|...+..   +.++..........+..   +.......    ....+.+.........+....       
T Consensus       163 ~~l~~~~~~~a~~l~~~---l~~~~~~~~~a~~~l~~---~p~~~~~~----~~~~~~~~~~~~~~~~~l~rl-------  225 (450)
T d1qsaa1         163 LAMKAGNTGLVTVLAGQ---MPADYQTIASAIISLAN---NPNTVLTF----ARTTGATDFTRQMAAVAFASV-------  225 (450)
T ss_dssp             HHHHTTCHHHHHHHHHT---CCGGGHHHHHHHHHHHH---CGGGHHHH----HHHSCCCHHHHHHHHHHHHHH-------
T ss_pred             HHHHcCChhhHHHHHhh---CChhHHHHHHHHHHHHh---ChHhHHHH----HhcCCCChhhhHHHHHHHHHH-------
Confidence            22233333333322211   01111111111111111   11111111    111111101111222222222       


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCcHHHHHHHH----HHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcC
Q psy16607        514 VYNDQPEVALLFYRRLLQMGLYNAELFNNLA----LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITECS  589 (677)
Q Consensus       514 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la----~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~~  589 (677)
                       ...+.+.|...+.......+.....+....    ..+...+..+.|...+.....  ...+.......++..+      
T Consensus       226 -a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~w~~~~al------  296 (450)
T d1qsaa1         226 -ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMAL------  296 (450)
T ss_dssp             -HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHH------
T ss_pred             -hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc--cccchHHHHHHHHHHH------
Confidence             346788888888887766655554443333    333345667888888877765  3333333333344333      


Q ss_pred             CCCcccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16607        590 PFSFSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  654 (677)
Q Consensus       590 p~~~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  654 (677)
                                    ..+++..+...+..........+...+.+|..+...|+.++|...|..+..
T Consensus       297 --------------~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         297 --------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             --------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             --------------HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence                          678999998888765433334467789999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.01  E-value=0.15  Score=48.24  Aligned_cols=39  Identities=13%  Similarity=0.057  Sum_probs=28.7

Q ss_pred             cCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHH
Q psy16607        604 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  644 (677)
Q Consensus       604 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  644 (677)
                      +.++..-...+++.....  ++..+...++.+|...++++.
T Consensus       260 k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         260 KVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             HTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH
Confidence            666666666777665543  356788999999999999754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.75  E-value=0.19  Score=47.48  Aligned_cols=250  Identities=10%  Similarity=0.020  Sum_probs=145.4

Q ss_pred             HhcccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16607        299 YHHENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFTDIEAFIRMIRVYIRLDQPIRAID  378 (677)
Q Consensus       299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~  378 (677)
                      +...|.|+.|..+|...-      +.   -.+..++.+.++++.|...+.+.    ....+|......+.......-|..
T Consensus        24 c~~~~lye~A~~lY~~~~------d~---~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~~e~~la~i   90 (336)
T d1b89a_          24 CYDEKMYDAAKLLYNNVS------NF---GRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQM   90 (336)
T ss_dssp             -----CTTTHHHHHHHTT------CH---HHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHhCC------CH---HHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhCcHHHHHHH
Confidence            445789999998887543      11   35567888999999998887765    357788888888888776654422


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCC
Q psy16607        379 IGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ-MGLY  457 (677)
Q Consensus       379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~  457 (677)
                      + ...   .-.+++-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-+++++..-. .++.
T Consensus        91 ~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~  165 (336)
T d1b89a_          91 C-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP  165 (336)
T ss_dssp             T-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHH
T ss_pred             H-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHH
Confidence            1 111   11245555667788888999999999999998888888888888888887654 4454555443211 1111


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHH
Q psy16607        458 -------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVYNDQPEVALLFYRRLL  530 (677)
Q Consensus       458 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~A~~~~~~al  530 (677)
                             ....|-.+..+|.+.|+++.|+..+-.-   .++.   .-....-.++.        +..+.+..-+...-.+
T Consensus       166 k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~---~~~~---~~~~~f~e~~~--------k~~N~e~~~~~i~~yL  231 (336)
T d1b89a_         166 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH---PTDA---WKEGQFKDIIT--------KVANVELYYRAIQFYL  231 (336)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS---TTTT---CCHHHHHHHHH--------HCSSTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc---chhh---hhHHHHHHHHH--------ccCChHHHHHHHHHHH
Confidence                   1122445667777788888877654331   1110   00111112222        4455554444444444


Q ss_pred             HcCCCcHHHH----------HHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q psy16607        531 QMGLYNAELF----------NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  584 (677)
Q Consensus       531 ~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~  584 (677)
                      +..|....-+          ..+.....+.++..-...+++....    .+...+...+..+|.
T Consensus       232 ~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~----~n~~~vn~al~~lyi  291 (336)
T d1b89a_         232 EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN----HNNKSVNESLNNLFI  291 (336)
T ss_dssp             HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT----TCCHHHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH----cChHHHHHHHHHHHh
Confidence            4444332111          1233344455555555555555432    344567888888888

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=2.3  Score=41.61  Aligned_cols=318  Identities=10%  Similarity=-0.034  Sum_probs=178.7

Q ss_pred             cccCHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C------------------HHHHH
Q psy16607        301 HENDVASAMDLAVESTKACEFRDWWWKVQLGKCYFSLGLIREAQQQFNSALNQFT-D------------------IEAFI  361 (677)
Q Consensus       301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~------------------~~~~~  361 (677)
                      ..++++..+..+    ... +.+....+..+.++...|+..+|...+..+..... .                  ...+.
T Consensus        84 ~~~~w~~~~~~~----~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~  158 (450)
T d1qsaa1          84 RREDWRGLLAFS----PEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL  158 (450)
T ss_dssp             HTTCHHHHHHHC----CSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred             hccCHHHHHHhc----cCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHH
Confidence            356665544333    223 33444446777888888888888887777765433 2                  22222


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCcCCHHH--HHHHHHHHHhCC
Q psy16607        362 RMIRVYIRLDQPIRAIDIGRNALDCYPNEVTIMTEMARIFEGLNNMPMSVKYYKLILKRDATCMEA--IACIGVNHFYND  439 (677)
Q Consensus       362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g  439 (677)
                      .........|++..|...+..   +.++.......+..+..   +......    .....+.+...  ....+..-....
T Consensus       159 ~R~~~~l~~~~~~~a~~l~~~---l~~~~~~~~~a~~~l~~---~p~~~~~----~~~~~~~~~~~~~~~~~~l~rla~~  228 (450)
T d1qsaa1         159 ERIRLAMKAGNTGLVTVLAGQ---MPADYQTIASAIISLAN---NPNTVLT----FARTTGATDFTRQMAAVAFASVARQ  228 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---CCGGGHHHHHHHHHHHH---CGGGHHH----HHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhhHHHHHhh---CChhHHHHHHHHHHHHh---ChHhHHH----HHhcCCCChhhhHHHHHHHHHHhcc
Confidence            333344444555444443322   11111111111111111   1111111    11222222221  222333333446


Q ss_pred             ChHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhhhccccc
Q psy16607        440 QPEVALLFYRRLLQMGLYNAELFNNLALCC----FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAILNALSTSVY  515 (677)
Q Consensus       440 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~l~~l~~~~~  515 (677)
                      +.+.|...+.......+.....+.......    ...+..+.+...+........+.  ......++..+         .
T Consensus       229 d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~w~~~~al---------~  297 (450)
T d1qsaa1         229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST--SLIERRVRMAL---------G  297 (450)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH--HHHHHHHHHHH---------H
T ss_pred             ChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch--HHHHHHHHHHH---------H
Confidence            788888888887776666655444333333    33466777877777766554443  33333333333         5


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhc-C-----
Q psy16607        516 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIITEC-S-----  589 (677)
Q Consensus       516 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~l~~~~~~~~~-~-----  589 (677)
                      .+++..+...+..+-......+...+-+|..+...|+.++|...|..+..   .++   .|-.++.......- .     
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~~Lg~~~~~~~~~~  371 (450)
T d1qsaa1         298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQRIGEEYELKIDKA  371 (450)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHHHTTCCCCCCCCCC
T ss_pred             cCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHHHcCCCCCCCcCCC
Confidence            68888888888765444445577889999999999999999999998864   232   34444433321111 0     


Q ss_pred             CCC-------cccchhhhHHhcCCCHHHHHHHHHHHHccCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16607        590 PFS-------FSTHTSYLFIQGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  652 (677)
Q Consensus       590 p~~-------~~~~~~~~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  652 (677)
                      +..       .+.......+...|+...|...+..++..  .++.-...++.+..+.|.++.|+....++
T Consensus       372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            000       01112223777999999999999888754  34667778899999999999999887776