Psyllid ID: psy16677

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
MTDSSNLFDASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKKKEEEKKEAKKKTKKKEEEKKKKTRMRGGIERQ
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHccccccc
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHEEHcccccccHccHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccc
mtdssnlfdasmpgynvtdstspdenvsSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVkplkypinMTKRVVAFMLLNVWvspavisfvpimcgwyttsehlkyryqhpnicdfkKKKEEEKKEAKKKTKKKEEEKKKKTRmrggierq
mtdssnlfdasmpgynvtdstspdeNVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHpnicdfkkkkeeekkeakkktkkkeeekkkktrmrggierq
MTDSSNLFDASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFkkkkeeekkeakkktkkkeeekkkkTRMRGGIERQ
**************************VSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDF***********************************
********************TSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKKKEEE****************************
********DASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKK********************************
*************************NVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKKKEEEKKEAKKKTKKKEEE**************
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTDSSNLFDASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGIERQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
Q4LBB9 536 Octopamine receptor beta- no N/A 0.819 0.347 0.648 4e-68
Q9VCZ3 508 Octopamine receptor beta- no N/A 0.784 0.350 0.651 2e-63
Q4LBB6 1256 Octopamine receptor beta- no N/A 0.660 0.119 0.708 4e-61
P97288 388 5-hydroxytryptamine recep yes N/A 0.599 0.350 0.528 1e-30
O70528 388 5-hydroxytryptamine recep yes N/A 0.577 0.337 0.548 2e-30
Q62758 406 5-hydroxytryptamine recep yes N/A 0.643 0.359 0.490 9e-30
P07700 483 Beta-1 adrenergic recepto no N/A 0.788 0.370 0.347 2e-29
P97717 514 Alpha-1B adrenergic recep no N/A 0.722 0.319 0.421 2e-29
Q13639 388 5-hydroxytryptamine recep no N/A 0.577 0.337 0.541 2e-29
P42290 457 D(1B) dopamine receptor O N/A N/A 0.616 0.306 0.462 3e-29
>sp|Q4LBB9|OCTB2_DROME Octopamine receptor beta-2R OS=Drosophila melanogaster GN=Octbeta2R PE=2 SV=2 Back     alignment and function desciption
 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 154/188 (81%), Gaps = 2/188 (1%)

Query: 10  ASMPGYNVTDSTSPDEN-VSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIIT 68
           A +  ++     +PDE+ + +I+W+  +A +M+ II+A+I GNLLVI+SVMR RKLR+IT
Sbjct: 130 AGLSDHHHHQQHNPDEDWLDNIVWV-FKAFVMLLIIIAAICGNLLVIISVMRVRKLRVIT 188

Query: 69  NYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCIS 128
           NYFVVSLA AD++VA++AMTFN SVQVTG+WNFS F+CD+WNSLDVYFSTASILHLCCIS
Sbjct: 189 NYFVVSLAMADIMVAIMAMTFNFSVQVTGRWNFSPFLCDLWNSLDVYFSTASILHLCCIS 248

Query: 129 VDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPN 188
           VDRYYAIVKPLKYPI+MTKRVV  MLLN W+SPA++SF+PI  GWYTT +H ++  Q+P 
Sbjct: 249 VDRYYAIVKPLKYPISMTKRVVGIMLLNTWISPALLSFLPIFIGWYTTPQHQQFVIQNPT 308

Query: 189 ICDFKKKK 196
            C F   K
Sbjct: 309 QCSFVVNK 316
Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.
Drosophila melanogaster (taxid: 7227)
>sp|Q9VCZ3|OCTB1_DROME Octopamine receptor beta-1R OS=Drosophila melanogaster GN=oa2 PE=2 SV=1 Back     alignment and function description
>sp|Q4LBB6|OCTB3_DROME Octopamine receptor beta-3R OS=Drosophila melanogaster GN=Octbeta3R PE=2 SV=4 Back     alignment and function description
>sp|P97288|5HT4R_MOUSE 5-hydroxytryptamine receptor 4 OS=Mus musculus GN=Htr4 PE=1 SV=3 Back     alignment and function description
>sp|O70528|5HT4R_CAVPO 5-hydroxytryptamine receptor 4 OS=Cavia porcellus GN=HTR4 PE=2 SV=1 Back     alignment and function description
>sp|Q62758|5HT4R_RAT 5-hydroxytryptamine receptor 4 OS=Rattus norvegicus GN=Htr4 PE=2 SV=1 Back     alignment and function description
>sp|P07700|ADRB1_MELGA Beta-1 adrenergic receptor OS=Meleagris gallopavo GN=ADRB1 PE=1 SV=1 Back     alignment and function description
>sp|P97717|ADA1B_MOUSE Alpha-1B adrenergic receptor OS=Mus musculus GN=Adra1b PE=1 SV=2 Back     alignment and function description
>sp|Q13639|5HT4R_HUMAN 5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2 Back     alignment and function description
>sp|P42290|DRD5_XENLA D(1B) dopamine receptor OS=Xenopus laevis GN=drd5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
242020588 432 class A rhodopsin-like G-protein coupled 0.854 0.449 0.690 4e-70
291278187 404 putative GPCR-type octopamine beta recep 0.770 0.433 0.714 6e-69
322788170 443 hypothetical protein SINV_06087 [Solenop 0.841 0.431 0.671 2e-67
307205929 414 Octopamine receptor beta-2R [Harpegnatho 0.713 0.391 0.765 3e-67
332017514 446 Octopamine receptor beta-2R [Acromyrmex 0.854 0.434 0.661 3e-67
442618720 630 Octbeta2R, isoform F [Drosophila melanog 0.819 0.295 0.648 7e-67
347968749 526 AGAP002886-PB [Anopheles gambiae str. PE 0.735 0.317 0.730 1e-66
194764829 628 GF23002 [Drosophila ananassae] gi|190614 0.726 0.262 0.734 2e-66
195500538 612 GE24503 [Drosophila yakuba] gi|194183515 0.748 0.277 0.697 2e-66
195571385 611 GD20557 [Drosophila simulans] gi|1941996 0.819 0.304 0.648 2e-66
>gi|242020588|ref|XP_002430734.1| class A rhodopsin-like G-protein coupled receptor GPRoar1, putative [Pediculus humanus corporis] gi|212515931|gb|EEB17996.1| class A rhodopsin-like G-protein coupled receptor GPRoar1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/194 (69%), Positives = 155/194 (79%)

Query: 3   DSSNLFDASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHR 62
           +  N FD ++  + +  ++   ++ + I+   ++  IM FIIVA+I GNLLVIVSVMRHR
Sbjct: 11  NEQNPFDFNVTDFPIILTSEETQSWTIILANVIKILIMSFIIVAAIFGNLLVIVSVMRHR 70

Query: 63  KLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASIL 122
           KLRIITNYFVVSLAFADMLVAMVAMTFN SVQVTGKW F +FMCDVWNS DVYFSTASIL
Sbjct: 71  KLRIITNYFVVSLAFADMLVAMVAMTFNFSVQVTGKWIFGYFMCDVWNSFDVYFSTASIL 130

Query: 123 HLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKY 182
           HLCCISVDRYYAIVKPL+YPINMTK+VV  MLLN W+SPA+ISFVPI  GWYTT EH  +
Sbjct: 131 HLCCISVDRYYAIVKPLRYPINMTKKVVWIMLLNTWLSPAMISFVPIFLGWYTTEEHKIF 190

Query: 183 RYQHPNICDFKKKK 196
           R  +P  CDFK  K
Sbjct: 191 RDNNPYECDFKVNK 204

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|291278187|gb|ADD91575.1| putative GPCR-type octopamine beta receptor, partial [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|322788170|gb|EFZ13952.1| hypothetical protein SINV_06087 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307205929|gb|EFN84067.1| Octopamine receptor beta-2R [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332017514|gb|EGI58225.1| Octopamine receptor beta-2R [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|442618720|ref|NP_001163596.2| Octbeta2R, isoform F [Drosophila melanogaster] gi|440217348|gb|ACZ94893.2| Octbeta2R, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|347968749|ref|XP_003436280.1| AGAP002886-PB [Anopheles gambiae str. PEST] gi|333467860|gb|EGK96733.1| AGAP002886-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|194764829|ref|XP_001964530.1| GF23002 [Drosophila ananassae] gi|190614802|gb|EDV30326.1| GF23002 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195500538|ref|XP_002097414.1| GE24503 [Drosophila yakuba] gi|194183515|gb|EDW97126.1| GE24503 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195571385|ref|XP_002103684.1| GD20557 [Drosophila simulans] gi|194199611|gb|EDX13187.1| GD20557 [Drosophila simulans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
FB|FBgn0038063 536 Octbeta2R "Octbeta2R" [Drosoph 0.748 0.317 0.697 6e-64
FB|FBgn0038980 508 oa2 "octopamine receptor 2" [D 0.762 0.340 0.658 4e-58
FB|FBgn0250910 1256 Octbeta3R "Octbeta3R" [Drosoph 0.775 0.140 0.627 1.9e-55
ZFIN|ZDB-GENE-091204-249 360 si:dkey-247m21.3 "si:dkey-247m 0.691 0.436 0.496 2.3e-32
ZFIN|ZDB-GENE-081022-145 390 adrb1 "adrenergic receptor, be 0.779 0.453 0.387 1.6e-31
UNIPROTKB|F1N9W0 401 ADRB2 "Uncharacterized protein 0.797 0.451 0.371 6.9e-31
MGI|MGI:109246 388 Htr4 "5 hydroxytryptamine (ser 0.674 0.394 0.493 6.9e-31
UNIPROTKB|F1NJL4 371 HTR4 "Uncharacterized protein" 0.577 0.353 0.556 8.8e-31
UNIPROTKB|F1RLA8 366 HTR4 "5-hydroxytryptamine rece 0.674 0.418 0.493 1.8e-30
UNIPROTKB|Q8K4Z4 418 Adrb2 "Beta-2 adrenergic recep 0.762 0.413 0.389 1.8e-30
FB|FBgn0038063 Octbeta2R "Octbeta2R" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 120/172 (69%), Positives = 149/172 (86%)

Query:    22 SPDEN-VSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADM 80
             +PDE+ + +I+W+  +A +M+ II+A+I GNLLVI+SVMR RKLR+ITNYFVVSLA AD+
Sbjct:   142 NPDEDWLDNIVWV-FKAFVMLLIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADI 200

Query:    81 LVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLK 140
             +VA++AMTFN SVQVTG+WNFS F+CD+WNSLDVYFSTASILHLCCISVDRYYAIVKPLK
Sbjct:   201 MVAIMAMTFNFSVQVTGRWNFSPFLCDLWNSLDVYFSTASILHLCCISVDRYYAIVKPLK 260

Query:   141 YPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDF 192
             YPI+MTKRVV  MLLN W+SPA++SF+PI  GWYTT +H ++  Q+P  C F
Sbjct:   261 YPISMTKRVVGIMLLNTWISPALLSFLPIFIGWYTTPQHQQFVIQNPTQCSF 312
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0004989 "octopamine receptor activity" evidence=IDA
GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP
FB|FBgn0038980 oa2 "octopamine receptor 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0250910 Octbeta3R "Octbeta3R" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-249 si:dkey-247m21.3 "si:dkey-247m21.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081022-145 adrb1 "adrenergic receptor, beta 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9W0 ADRB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:109246 Htr4 "5 hydroxytryptamine (serotonin) receptor 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJL4 HTR4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLA8 HTR4 "5-hydroxytryptamine receptor 4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8K4Z4 Adrb2 "Beta-2 adrenergic receptor" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O705285HT4R_CAVPONo assigned EC number0.54880.57700.3376yesN/A
P972885HT4R_MOUSENo assigned EC number0.52890.59910.3505yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-36
PHA03087 335 PHA03087, PHA03087, G protein-coupled chemokine re 6e-11
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 3e-05
pfam10328275 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR 1e-04
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 0.001
pfam0870180 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase 0.003
pfam10278178 pfam10278, Med19, Mediator of RNA pol II transcrip 0.004
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  127 bits (322), Expect = 3e-36
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 56  VSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVY 115
           + ++R +KLR  TN F+++LA AD+L  +    +     V G W F   +C +   L V 
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 116 FSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT 175
              ASIL L  IS+DRY AIV PL+Y    T R    ++L VWV   ++S  P++  W  
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 176 TSEHLKYRYQHPNICDF 192
           T E       +   C  
Sbjct: 121 TVE-----EGNVTTCLI 132

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase Back     alignment and domain information
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
KOG4219|consensus 423 99.93
PHA03234 338 DNA packaging protein UL33; Provisional 99.92
KOG4220|consensus 503 99.91
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.9
PHA03235 409 DNA packaging protein UL33; Provisional 99.89
PHA02834 323 chemokine receptor-like protein; Provisional 99.89
PHA03087 335 G protein-coupled chemokine receptor-like protein; 99.88
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.85
KOG2087|consensus 363 99.68
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.61
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.58
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 98.75
PF10324 318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.69
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.69
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.5
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.35
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 97.99
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.97
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 97.97
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 97.83
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 97.51
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.42
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 97.09
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 96.57
PF02117 328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 96.31
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 96.15
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 95.79
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 95.44
PF10326 307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 94.31
KOG4193|consensus 610 94.04
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 93.73
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 92.92
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 92.75
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 92.55
PF10319 310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 91.68
PF03125 365 Sre: C. elegans Sre G protein-coupled chemorecepto 90.58
KOG4564|consensus 473 82.35
>KOG4219|consensus Back     alignment and domain information 
Probab=99.93  E-value=1.8e-26  Score=187.32  Aligned_cols=144  Identities=28%  Similarity=0.539  Sum_probs=134.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccc
Q psy16677         26 NVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFM  105 (227)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~  105 (227)
                      -..+.....+.++++.++.+++++||.++++++..+|++|+.+|++++|||+||++.+++..++.........|.+|..+
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~  107 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY  107 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence            44566778889999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy16677        106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC  171 (227)
Q Consensus       106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  171 (227)
                      |++..++..+...+|++++++||+|||.||.+|++.+  .+++..+..+.++|+.|++++.|..+.
T Consensus       108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~  171 (423)
T KOG4219|consen  108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLY  171 (423)
T ss_pred             eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceee
Confidence            9999999999999999999999999999999999844  799999999999999999999877443

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 4e-29
2y00_B 315 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-29
2vt4_A 313 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-29
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 7e-29
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 7e-29
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 7e-29
3kj6_A 366 Crystal Structure Of A Methylated Beta2 Adrenergic 7e-29
2r4r_A 365 Crystal Structure Of The Human Beta2 Adrenoceptor L 7e-29
4gbr_A 309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-28
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 4e-28
2r4s_A 342 Crystal Structure Of The Human Beta2 Adrenoceptor L 1e-27
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 3e-23
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 1e-19
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 3e-18
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 2e-15
2ks9_A 364 Solution Conformation Of Substance P In Water Compl 9e-13
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 2e-11
4ea3_B 434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 1e-10
3pwh_A 329 Thermostabilised Adenosine A2a Receptor Length = 32 1e-10
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 2e-10
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 2e-10
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 2e-10
3vg9_A 326 Crystal Structure Of Human Adenosine A2a Receptor W 8e-10
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 1e-09
2ydo_A 325 Thermostabilised Human A2a Receptor With Adenosine 4e-09
2ziy_A 372 Crystal Structure Of Squid Rhodopsin Length = 372 1e-07
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 1e-07
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 1e-05
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-05
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-05
3oax_A 349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-05
1jfp_A 348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-05
2x72_A 349 Crystal Structure Of The Constitutively Active E113 2e-05
4a4m_A 349 Crystal Structure Of The Light-Activated Constituti 2e-05
2j4y_A 349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 2e-05
3c9m_A 348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 2e-05
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 1e-04
3vw7_A 484 Crystal Structure Of Human Protease-Activated Recep 5e-04
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 19  DSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFA 78
           D+ + DE     +W+     +M  I++A + GN+LVI ++ +  +L+ +TNYF+ SLA A
Sbjct: 173 DAYAADE-----VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 227
Query: 79  DMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKP 138
           D+++ +  + F A+  +T  W F  F C+ W S+DV   TASI  LC I+VDRY+AI  P
Sbjct: 228 DLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSP 287
Query: 139 LKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
            KY   +TK     ++L VW+   + SF+PI   WY  T +     Y     CDF
Sbjct: 288 FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 342
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.95
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.95
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.94
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.94
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.94
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.93
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.93
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.93
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.93
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.93
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.93
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.93
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.92
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.92
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.92
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.92
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.91
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.91
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.47
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.86
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.95  E-value=2.9e-28  Score=211.77  Aligned_cols=147  Identities=22%  Similarity=0.363  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc---cchhhHHHHHHHHHHHHHHHhHhhHHHHHHhc--Cccccc
Q psy16677         28 SSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKL---RIITNYFVVSLAFADMLVAMVAMTFNASVQVT--GKWNFS  102 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l---~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~--~~~~~~  102 (227)
                      .......++.+++.+++++|++||+++++++.+++++   +++.++|++|||++|++++++.+|+.+.....  +.|.+|
T Consensus        27 ~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g  106 (510)
T 4grv_A           27 TDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFG  106 (510)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhh
Confidence            3445677888899999999999999999999887654   47889999999999999999999988876654  469999


Q ss_pred             ccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy16677        103 FFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT  175 (227)
Q Consensus       103 ~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  175 (227)
                      ..+|++..++..++..+|++++++||+|||+||++|++|+...+++++..+++++|++++++++|+ ++++..
T Consensus       107 ~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~-~~~~~~  178 (510)
T 4grv_A          107 DAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPM-LFTMGL  178 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTH-HHHEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHH-HHhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999888 555443
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 227
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 1e-18
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.2 bits (199), Expect = 1e-18
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 7/193 (3%)

Query: 3   DSSNLFDASMPGYNVTDSTS-----PDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVS 57
           + +   +  +P  N T         P   ++     ++ A+ M  +I+     N L +  
Sbjct: 2   NGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYV 61

Query: 58  VMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFS 117
            ++H+KLR   NY +++LA AD+ +     T      + G + F    C++         
Sbjct: 62  TVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 121

Query: 118 TASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 177
             ++  L  ++++RY  + KP+          +  +        A+    P + GW    
Sbjct: 122 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGV--AFTWVMALACAAPPLVGWSRYI 179

Query: 178 EHLKYRYQHPNIC 190
                     +  
Sbjct: 180 PEGMQCSCGIDYY 192

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.88
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.7e-22  Score=164.44  Aligned_cols=144  Identities=19%  Similarity=0.319  Sum_probs=128.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccc
Q psy16677         26 NVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFM  105 (227)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~  105 (227)
                      ...+.....++.+++.+++++|++||+++++++.++|++|++.++++.|||++|++.++...|..+.....+.|..+...
T Consensus        30 ~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~  109 (348)
T d1u19a_          30 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG  109 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchh
Confidence            33344556788889999999999999999999999999999999999999999999999999988888888888899999


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy16677        106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM  170 (227)
Q Consensus       106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  170 (227)
                      |+...++...+..++.+.++++++|||.+|++|++|+.. ++++....+..+|..++++..|+.+
T Consensus       110 c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  173 (348)
T d1u19a_         110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLV  173 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGT
T ss_pred             hhhhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheeccccc
Confidence            999999999999999999999999999999999998765 6667777888889888888888744