Psyllid ID: psy16758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MDNSPEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIENSKSYFKENS
Secondary Structure (PSIPRED)
cccccccccccEEEEHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccEEEEEccccccccccccccccEEEccccccccccccccccccccEEEEEEEccEEEEcccccccccccccHHHHHHHHHHHHccccEEEEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHcccccccccccccccHHHHHHHHHHcccEEEEEccccccccccHHccEEEEEEccccccccEEEccccccccEEEEEEEccEEEEccccccccccccccHHHHHHHHHHHHccccEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MDNSPEAQEIIYHEKQMKELCALHALNnlfqnpktfskadlDEICinlspqtwlnphrsilglgnyDINVIMTALQKkgfesnwfdrrkdpkcidqqkvegyilnipsqfkigkyvptpikrrhWLTVRNINGIYynldskldnpehigrEEDLVEYLRDVLSDIDKELFVVTRIensksyfkens
Flexible Loop (DISEMBL)
MDNSPEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKgfesnwfdrrkdpkCIDQQKVEgyilnipsqfkigkyvptpikrrhWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLsdidkelfvvtriensksyfkens
Low Complexity Region (SEG)
MDNSPEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIENSKSYFKENS
Disordered region (IsUnstruct)
*********IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIE**********
Disordered Region (DISOPRED)
*************EKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTW******ILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIEN*********
Disordered Region (DISEMBL)
MDNSPEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIENSKSYFKENS
Disordered Region (DISPRO)
*********IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIENSKSY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNSPEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIENSKSYFKENS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9W422	221	Josephin-like protein OS=	yes	N/A	0.865	0.728	0.549	2e-52
Q8TAC2	188	Josephin-2 OS=Homo sapien	yes	N/A	0.983	0.973	0.447	2e-42
Q5R739	202	Josephin-1 OS=Pongo abeli	yes	N/A	0.913	0.841	0.494	8e-42
Q15040	202	Josephin-1 OS=Homo sapien	no	N/A	0.913	0.841	0.494	8e-42
Q9CR30	188	Josephin-2 OS=Mus musculu	yes	N/A	0.967	0.957	0.454	9e-42
Q9DBJ6	202	Josephin-1 OS=Mus musculu	no	N/A	0.913	0.841	0.494	9e-42
Q5BJY4	202	Josephin-1 OS=Rattus norv	no	N/A	0.913	0.841	0.494	1e-41
Q5EAE5	202	Josephin-1 OS=Bos taurus	no	N/A	0.913	0.841	0.488	1e-41
O82391	360	Josephin-like protein OS=	yes	N/A	0.795	0.411	0.378	7e-23
Q9M391	280	Ataxin-3 homolog OS=Arabi	no	N/A	0.655	0.435	0.269	3e-07

>sp|Q9W422|JOSL_DROME Josephin-like protein OS=Drosophila melanogaster GN=CG3781 PE=2 SV=3

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHE+Q + LC LHALNNLFQ P  FSK++LD+ C  L+P+ WLNPHRS +G GNYD+NV
Sbjct: 39  IYHERQTRHLCGLHALNNLFQGPDMFSKSELDDYCTTLTPRNWLNPHRSWIGWGNYDVNV 98

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQ++  E+ WFDRR+DP C++   + G+ILN+P+Q  +G Y+P P   RHWL +R 
Sbjct: 99  IMYALQQRNCEAVWFDRRRDPHCLNLSVIFGFILNVPAQMSLGYYIPLPFHMRHWLALRR 158

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVV 172
           +NG YYNLDSKL  P+ +G E+  +E+L   L  +D ELF+V
Sbjct: 159 LNGSYYNLDSKLREPKCLGTEQQFLEFLATQLQ-MDHELFLV 199

May act as a deubiquitinating enzyme.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q8TAC2|JOS2_HUMAN Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 123/190 (64%), Gaps = 7/190 (3%)

Query: 1   MDNSPEAQE---IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH 57
           M  +P AQ     +YHE+Q  ELCA+HALNN+ Q  + FS+   DEIC  L+P + LNPH
Sbjct: 1   MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQ-QLFSQEAADEICKRLAPDSRLNPH 59

Query: 58  RSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVP 117
           RS+LG GNYD+NVIM ALQ  G  + W+DRR+    +   +V G ILN+PS   +G  + 
Sbjct: 60  RSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLG-LLS 118

Query: 118 TPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLS-DIDKELFVVTR-I 175
            P++RRHW+ +R ++G+YYNLDSKL  PE +G E+ +  +L   L+  + + L VVT+ +
Sbjct: 119 LPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVVTKEV 178

Query: 176 ENSKSYFKEN 185
           E   S+ + +
Sbjct: 179 EEKGSWLRTD 188

Cleaves 'Lys-63'-linked poly-ubiquitin chains, and with lesser efficiency 'Lys-48'-linked poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5R739|JOS1_PONAB Josephin-1 OS=Pongo abelii GN=JOSD1 PE=2 SV=1

 Score =  169 bits (429), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
           IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct: 26  IYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query: 70  VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
           VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct: 86  VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
            + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q15040|JOS1_HUMAN Josephin-1 OS=Homo sapiens GN=JOSD1 PE=1 SV=1

 Score =  169 bits (429), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
           IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct: 26  IYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query: 70  VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
           VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct: 86  VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
            + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9CR30|JOS2_MOUSE Josephin-2 OS=Mus musculus GN=Josd2 PE=2 SV=1

 Score =  169 bits (428), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 122/187 (65%), Gaps = 7/187 (3%)

Query: 1   MDNSPEAQEI---IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH 57
           M  +PEA+     +YHE+Q  ELCA+HALNN+ Q  + FS+   DEIC  L+P + LNPH
Sbjct: 1   MSQAPEARPSPPSVYHERQRLELCAVHALNNVLQE-QLFSQEAADEICKRLAPDSRLNPH 59

Query: 58  RSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVP 117
           RS+LG GNYD+NVIM ALQ  G  + W+DRR+    +   +V G ILN+PS   +G  + 
Sbjct: 60  RSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLG-LLS 118

Query: 118 TPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLS-DIDKELFVVTR-I 175
            P++RRHW+ +R ++GIYYNLDSKL  PE +G E+ +  +L   L+  + + L VVT+ +
Sbjct: 119 LPLRRRHWVALRQVDGIYYNLDSKLRAPEALGDEDGVRTFLAAALAQGLCEVLLVVTKEV 178

Query: 176 ENSKSYF 182
           E +  + 
Sbjct: 179 EEAGCWL 185

Cleaves 'Lys-63'-linked poly-ubiquitin chains, and with lesser efficiency 'Lys-48'-linked poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9DBJ6|JOS1_MOUSE Josephin-1 OS=Mus musculus GN=Josd1 PE=2 SV=1

 Score =  169 bits (428), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH-RSILGLGNYDIN 69
           IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH +S+LG GNYD+N
Sbjct: 26  IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query: 70  VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
           VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct: 86  VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
            + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLVVPEEVEAHQSW 198

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5BJY4|JOS1_RAT Josephin-1 OS=Rattus norvegicus GN=Josd1 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
           IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct: 26  IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTVVTPHKKSMLGNGNYDVN 85

Query: 70  VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
           VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct: 86  VIMAALQTKGYEAVWWDKRRDVGVIALANVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
            + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLVVPEEVEAHQSW 198

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5EAE5|JOS1_BOVIN Josephin-1 OS=Bos taurus GN=JOSD1 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 117/174 (67%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
           IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct: 26  IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query: 70  VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
           VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct: 86  VIMAALQTKGYEAVWWDKRRDVGAIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
            + G YYNLDSKL  PE IG + +L ++L+  L   + EL +V    +E  +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O82391|JOSL_ARATH Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 21/169 (12%)

Query: 6   EAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINL-----SPQTW------L 54
           +++  IYHE+Q  + C LH LNNLFQ+   F+K  L+ I   L     + +TW      L
Sbjct: 3   DSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVL 62

Query: 55  NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCI---DQQKVEGYILNIPSQFK 111
            PH + +  GNYD+NV++TAL+ KG    W D+R     I   D   + G +LN+P +  
Sbjct: 63  KPHHNTI-TGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADTLMGIVLNVPVKRY 121

Query: 112 IGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRD 160
            G +     + RHW+ VR ING++YNLDS L  P+ + R++D V    D
Sbjct: 122 GGLW-----RSRHWVVVRKINGVWYNLDSDLVVPQ-LFRDDDEVRGFLD 164

May act as a deubiquitinating enzyme.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 41/163 (25%)

Query: 10  IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINL-----------------SPQT 52
           ++YHE Q   LCA+H +N + Q P  FS+ DL  +  +L                 +P  
Sbjct: 9   MLYHEVQESNLCAVHCVNTVLQGP-FFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGD 67

Query: 53  WL--NPHRSILGLGNYDINVIMTALQKKGFES---NWFDRRKDPKCIDQQKVEGYILNIP 107
           +L    H   LG G++ I V+  AL+    +    N  D   +P  ID +    +I ++ 
Sbjct: 68  FLAEESHNVSLG-GDFSIQVLQKALEVWDLQVIPLNCPD--AEPAQIDPELESAFICHL- 123

Query: 108 SQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGR 150
                           HW  +R +NG +YN DS L  P+H+ +
Sbjct: 124 --------------HDHWFCIRKVNGEWYNFDSLLAAPQHLSK 152

Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
357624215	230	hypothetical protein KGM_01783 [Danaus p	0.887	0.717	0.644	6e-59
91090280	221	PREDICTED: similar to AGAP005226-PA [Tri	0.870	0.733	0.607	5e-57
332374662	213	unknown [Dendroctonus ponderosae]	0.951	0.830	0.566	8e-57
195425648	197	GK10623 [Drosophila willistoni] gi|19415	0.956	0.903	0.582	1e-56
380011547	233	PREDICTED: josephin-like protein-like [A	0.956	0.763	0.554	1e-56
328793139	235	PREDICTED: josephin-like protein-like [A	0.913	0.723	0.574	2e-56
156545655	238	PREDICTED: josephin-like protein-like [N	0.935	0.731	0.567	4e-56
170044838	191	josephin-1 [Culex quinquefasciatus] gi|1	0.924	0.900	0.594	5e-56
350409313	234	PREDICTED: josephin-like protein-like [B	0.913	0.726	0.574	5e-56
340713491	235	PREDICTED: josephin-like protein-like [B	0.913	0.723	0.574	6e-56

>gi|357624215|gb|EHJ75077.1| hypothetical protein KGM_01783 [Danaus plexippus]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/166 (64%), Positives = 132/166 (79%), Gaps = 1/166 (0%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHEKQ+KELCALHALNNLFQ   TFSK++LD IC  LSP  W+NPHRS+LGLGNYDINV
Sbjct: 7   IYHEKQVKELCALHALNNLFQTRNTFSKSELDTICSRLSPNVWINPHRSMLGLGNYDINV 66

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQKKG E+ WFD+RKDP C+D   + G+ILN+PS +K+G +V  P++RRHW+T+R 
Sbjct: 67  IMAALQKKGCEAVWFDKRKDPGCLDLSNICGFILNVPSDYKLG-FVMLPLRRRHWITIRQ 125

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIE 176
           I G +YNLDSKLD+P+ IGR  DL+ YL++ L   +KELFVV   E
Sbjct: 126 IQGNFYNLDSKLDSPQLIGRNTDLITYLKEQLECKEKELFVVVSKE 171

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090280|ref|XP_970932.1| PREDICTED: similar to AGAP005226-PA [Tribolium castaneum] gi|270013789|gb|EFA10237.1| hypothetical protein TcasGA2_TC012435 [Tribolium castaneum]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 135/163 (82%), Gaps = 1/163 (0%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHEKQ++ELCALHALNNLFQ+   F+K +LD IC +LSP  W+NPH+S+LGLGNYDINV
Sbjct: 6   IYHEKQVRELCALHALNNLFQSKDAFTKPELDVICHSLSPDNWINPHKSVLGLGNYDINV 65

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQ +G+E+ WFD+RKDP C++ + + GYILN+PS++KI  ++  P++RRHW+T+R 
Sbjct: 66  IMKALQSRGYETIWFDKRKDPSCLNFKNICGYILNVPSEYKIS-FITLPLRRRHWITIRQ 124

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT 173
           +NG++YNLDSKL++P+ IGRE DL+ YL++ L   DKELF+V 
Sbjct: 125 LNGLFYNLDSKLESPQIIGRESDLLNYLKEELDCRDKELFLVV 167

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374662|gb|AEE62472.1| unknown [Dendroctonus ponderosae]

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 139/180 (77%), Gaps = 3/180 (1%)

Query: 9   EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDI 68
           +++YHEKQ++ELCALHALNNLFQ    FSK++LD IC NLSP+ W+NPH+S+LGLGNYD+
Sbjct: 5   KVVYHEKQVRELCALHALNNLFQEKGAFSKSELDSICYNLSPENWINPHKSVLGLGNYDV 64

Query: 69  NVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTV 128
           NVIM ALQ + +E  WFD+RKDP  I  + V G+ILN+P+ +K   ++  P+KRRHW+ V
Sbjct: 65  NVIMRALQIRNYEMIWFDKRKDPSSIQLENVTGFILNVPTDYKFS-FITIPLKRRHWIAV 123

Query: 129 RNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIENSK--SYFKENS 186
           + +NG+YYNLDSKL++P  IG EEDL+ +LR  L   DKELFV+T  +++K  S+ K+ S
Sbjct: 124 KLLNGLYYNLDSKLEHPVAIGNEEDLLNFLRTELDSQDKELFVITTSDSAKLSSWLKQQS 183

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425648|ref|XP_002061106.1| GK10623 [Drosophila willistoni] gi|194157191|gb|EDW72092.1| GK10623 [Drosophila willistoni]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 141/189 (74%), Gaps = 11/189 (5%)

Query: 5   PEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLG 64
           P +Q  IYHEKQ ++LCALHALNNLFQ  ++FSKA+LD+IC NLSP TW+NPHRS+LGLG
Sbjct: 2   PRSQ--IYHEKQTRQLCALHALNNLFQGAESFSKAELDDICSNLSPDTWVNPHRSVLGLG 59

Query: 65  NYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRH 124
           NYDINVIMTAL  + +++ WFD+RKDP CID   + G+ILNIPS ++ G  V  P++RRH
Sbjct: 60  NYDINVIMTALALRNYQAVWFDKRKDPDCIDMDAIVGFILNIPSDYRFG-VVTLPLRRRH 118

Query: 125 WLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLS--DIDKELF-VVTRIEN---- 177
           W+ VR I  +YYNLDSKL  PE +G E DLV +LR+ LS  +  +ELF VV +  N    
Sbjct: 119 WIAVRRIGTVYYNLDSKLRQPELVGNESDLVRFLREQLSQPEQQRELFLVVNQASNGNET 178

Query: 178 -SKSYFKEN 185
            S+S+ KE+
Sbjct: 179 TSQSWLKES 187

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011547|ref|XP_003689863.1| PREDICTED: josephin-like protein-like [Apis florea]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 144/182 (79%), Gaps = 4/182 (2%)

Query: 3   NSPEAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILG 62
           N+ +    IYHE+Q+KELCALHALNNLFQ  + FSK +LD+IC +LSP  W+NPH+S+LG
Sbjct: 4   NTADVTGSIYHERQVKELCALHALNNLFQ-ERRFSKQELDQICYSLSPDVWINPHKSLLG 62

Query: 63  LGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKR 122
           LGNYDINVIM ALQ++G E+ WFD+R+DPKC+    +EG+ILN+P+++K+G +V  P+KR
Sbjct: 63  LGNYDINVIMAALQRRGHEAVWFDKRRDPKCLCLDNIEGFILNVPTEYKLG-FVLLPLKR 121

Query: 123 RHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKS 180
           RHW+ ++ I+G +YNLDSKLD+P+ IG+E DL+ YL+D +   +KELF+V    I+N++ 
Sbjct: 122 RHWIALKKIHGAFYNLDSKLDSPQLIGKENDLLRYLKDQIDSKEKELFLVVSREIDNNQG 181

Query: 181 YF 182
           + 
Sbjct: 182 WL 183

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793139|ref|XP_396099.3| PREDICTED: josephin-like protein-like [Apis mellifera]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 141/174 (81%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHE+Q+KELCALHALNNLFQ  + FSK +LD+IC +LSP  W+NPH+S+LGLGNYDINV
Sbjct: 13  IYHERQVKELCALHALNNLFQ-ERRFSKQELDQICYSLSPDVWINPHKSLLGLGNYDINV 71

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQ++G E+ WFD+R+DPKC+    +EG+ILN+P+++K+G +V  P+KRRHW+ ++ 
Sbjct: 72  IMAALQRRGHEAVWFDKRRDPKCLCLDNIEGFILNVPTEYKLG-FVLLPLKRRHWIALKK 130

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSYF 182
           I+G +YNLDSKLD+P+ IG+E DL+ YL+D +   +KELF+V    I+N++ + 
Sbjct: 131 IHGAFYNLDSKLDSPQLIGKENDLLRYLKDQIDSKEKELFLVVSKEIDNNQGWL 184

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545655|ref|XP_001604036.1| PREDICTED: josephin-like protein-like [Nasonia vitripennis]

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 140/178 (78%), Gaps = 4/178 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHE+Q+KELCALHALNNLFQ  K FSK +LD+IC NLSP  W+NPH+S+LGLGNYDINV
Sbjct: 13  IYHERQVKELCALHALNNLFQERK-FSKQELDQICYNLSPDVWINPHKSLLGLGNYDINV 71

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQ +G E+ WFD+R+DP C+    +EG+ILN+P ++K G +V  P+KRRHW+ ++ 
Sbjct: 72  IMAALQIRGCEAVWFDKRRDPDCLCLDNIEGFILNVPHEYKFG-FVLLPVKRRHWIALKK 130

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSYFKENS 186
           ING +YNLDSKLD+P+ IG++ DL+ YL++ + + +KELF+V    +E+ + +  E+S
Sbjct: 131 INGAFYNLDSKLDSPQLIGKDSDLLTYLKEQMENKEKELFLVVSQEVESRQGWLTESS 188

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044838|ref|XP_001850038.1| josephin-1 [Culex quinquefasciatus] gi|167867963|gb|EDS31346.1| josephin-1 [Culex quinquefasciatus]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 138/175 (78%), Gaps = 3/175 (1%)

Query: 10  IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDIN 69
           +IYHE+Q+KELCALHALNNLFQ+  +F+K  LDEIC  LSP  ++NPHRSILGLGNYDIN
Sbjct: 5   VIYHERQVKELCALHALNNLFQDASSFNKTQLDEICRELSPNDFINPHRSILGLGNYDIN 64

Query: 70  VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
           VI+TAL  K  E+ WFD+R+DP CID  K+ G ILN+PS++ IG ++  P++RRHW++V+
Sbjct: 65  VIITALHVKQCEAIWFDKRRDPSCIDTSKIVGLILNVPSKYSIG-FMKFPLQRRHWISVK 123

Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTR--IENSKSYF 182
            ING Y+NLDSKLD P+ IG E  ++EYLR+ L+  DKELFVV    +E+S+++ 
Sbjct: 124 KINGEYWNLDSKLDAPQKIGDESQIMEYLRNQLAGNDKELFVVCTQGVESSEAWL 178

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409313|ref|XP_003488690.1| PREDICTED: josephin-like protein-like [Bombus impatiens]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 141/174 (81%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHE+Q+KELCALHALNNLFQ  + FSK +LD+IC +LSP  W+NPH+S+LGLGNYDINV
Sbjct: 13  IYHERQVKELCALHALNNLFQ-ERGFSKQELDQICYSLSPDVWINPHKSLLGLGNYDINV 71

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQ++G E+ WFD+R+DPKC+    +EG+ILN+P+++K+G +V  P+KRRHW+ ++ 
Sbjct: 72  IMAALQRRGREAVWFDKRRDPKCLCLDNIEGFILNVPTEYKLG-FVLLPLKRRHWIALKK 130

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSYF 182
           I+G +YNLDSKLD+P+ IG+E DL+ YL+D +   +KELF+V    I+N++ + 
Sbjct: 131 IHGAFYNLDSKLDSPQLIGKENDLLIYLKDQIDSKEKELFLVVSREIDNNQGWL 184

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713491|ref|XP_003395276.1| PREDICTED: josephin-like protein-like [Bombus terrestris]

 Score =  222 bits (565), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 141/174 (81%), Gaps = 4/174 (2%)

Query: 11  IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
           IYHE+Q+KELCALHALNNLFQ  + FSK +LD+IC +LSP  W+NPH+S+LGLGNYDINV
Sbjct: 13  IYHERQVKELCALHALNNLFQ-ERGFSKQELDQICYSLSPDVWINPHKSLLGLGNYDINV 71

Query: 71  IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
           IM ALQ++G E+ WFD+R+DPKC+    +EG+ILN+P+++K+G +V  P+KRRHW+ ++ 
Sbjct: 72  IMAALQRRGREAVWFDKRRDPKCLCLDNIEGFILNVPTEYKLG-FVLLPLKRRHWIALKK 130

Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSYF 182
           I+G +YNLDSKLD+P+ IG+E DL+ YL+D +   +KELF+V    I+N++ + 
Sbjct: 131 IHGAFYNLDSKLDSPQLIGKENDLLIYLKDQIDSKEKELFLVVSREIDNNQGWL 184

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
FB|FBgn0029853	221	CG3781 [Drosophila melanogaste	0.865	0.728	0.549	2.5e-49
ZFIN|ZDB-GENE-040426-850	184	josd2 "Josephin domain contain	0.908	0.918	0.474	7.5e-41
UNIPROTKB|E1BSZ7	203	JOSD1 "Uncharacterized protein	0.951	0.871	0.478	2e-40
UNIPROTKB|E2RKB1	202	JOSD1 "Uncharacterized protein	0.913	0.841	0.494	3.3e-40
UNIPROTKB|F1SLC3	202	JOSD1 "Uncharacterized protein	0.913	0.841	0.494	5.3e-40
UNIPROTKB|Q15040	202	JOSD1 "Josephin-1" [Homo sapie	0.913	0.841	0.494	8.7e-40
ZFIN|ZDB-GENE-060929-260	235	josd1 "Josephin domain contain	0.935	0.740	0.477	8.7e-40
UNIPROTKB|Q5EAE5	202	JOSD1 "Josephin-1" [Bos taurus	0.913	0.841	0.488	1.4e-39
RGD|1305388	202	Josd1 "Josephin domain contain	0.913	0.841	0.494	1.8e-39
UNIPROTKB|F1RH21	188	JOSD2 "Uncharacterized protein	0.973	0.962	0.452	9.9e-39

FB|FBgn0029853 CG3781 [Drosophila melanogaster (taxid:7227)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 89/162 (54%), Positives = 119/162 (73%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
             IYHE+Q + LC LHALNNLFQ P  FSK++LD+ C  L+P+ WLNPHRS +G GNYD+NV
Sbjct:    39 IYHERQTRHLCGLHALNNLFQGPDMFSKSELDDYCTTLTPRNWLNPHRSWIGWGNYDVNV 98

Query:    71 IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
             IM ALQ++  E+ WFDRR+DP C++   + G+ILN+P+Q  +G Y+P P   RHWL +R 
Sbjct:    99 IMYALQQRNCEAVWFDRRRDPHCLNLSVIFGFILNVPAQMSLGYYIPLPFHMRHWLALRR 158

Query:   131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVV 172
             +NG YYNLDSKL  P+ +G E+  +E+L   L  +D ELF+V
Sbjct:   159 LNGSYYNLDSKLREPKCLGTEQQFLEFLATQLQ-MDHELFLV 199

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008242 "omega peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-850 josd2 "Josephin domain containing 2" [Danio rerio (taxid:7955)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 84/177 (47%), Positives = 122/177 (68%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
             ++HEKQ  ELCA+HALNN+ Q  + F+K   D+IC  L+PQ  +NPHRS+LG GNYD+NV
Sbjct:     6 VFHEKQRLELCAIHALNNVLQE-RVFTKETADDICKRLAPQCVMNPHRSVLGTGNYDVNV 64

Query:    71 IMTALQKKGFESNWFDRRKDPK--CIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTV 128
             IM ALQ +G  + W+D R+  +  C+D  K++G+ILN+PS+  +G  V  P++RRHWL V
Sbjct:    65 IMAALQSRGLAAVWWDERRSVQNLCLD--KIQGFILNVPSRVSLG-IVSLPLRRRHWLAV 121

Query:   129 RNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLS-DIDKELFVVTR-IENSKSYFK 183
             R ++G +YNLDSKL  P  IG E +L  +L + LS D+ + L VV + ++   ++ K
Sbjct:   122 REVHGHFYNLDSKLKGPACIGGETELRSFLTEQLSQDVAEMLLVVQKEVDEDGTWLK 178

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0021551 "central nervous system morphogenesis" evidence=IMP

UNIPROTKB|E1BSZ7 JOSD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 89/186 (47%), Positives = 122/186 (65%)

Query:     4 SPEAQEI-----IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR 58
             SPE  ++     IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+
Sbjct:    15 SPEPPQLLPPLHIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHK 74

Query:    59 -SILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVP 117
              S+LG GNYD+NVIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  + 
Sbjct:    75 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVNVIALSNVMGFIMNLPSSLCWGP-LK 133

Query:   118 TPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RI 175
              P+KR+HW+ VR + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +
Sbjct:   134 LPLKRQHWICVREVGGTYYNLDSKLKMPEWIGGESELRKFLKHQLRGKNCELLLVVPEEV 193

Query:   176 ENSKSY 181
             E  +S+
Sbjct:   194 EAHQSW 199

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|E2RKB1 JOSD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 86/174 (49%), Positives = 117/174 (67%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
             IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct:    26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query:    70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
             VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct:    86 VIMAALQTKGYEAVWWDKRRDVSAIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query:   130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
              + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct:   145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEARQSW 198

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F1SLC3 JOSD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 86/174 (49%), Positives = 117/174 (67%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
             IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct:    26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query:    70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
             VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct:    86 VIMAALQTKGYEAVWWDKRRDVGAIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query:   130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
              + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct:   145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|Q15040 JOSD1 "Josephin-1" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/174 (49%), Positives = 117/174 (67%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
             IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct:    26 IYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query:    70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
             VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct:    86 VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query:   130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
              + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct:   145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-060929-260 josd1 "Josephin domain containing 1" [Danio rerio (taxid:7955)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/178 (47%), Positives = 121/178 (67%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
             IYHEKQ +ELCALHALNN+FQ+   FS+  L +I   LSP T + PH+ ++LG GNYD+N
Sbjct:    59 IYHEKQHRELCALHALNNVFQDGAAFSRDALQDIYQRLSPSTLVTPHKKNMLGNGNYDVN 118

Query:    70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
             VIM ALQ +GFE+ W+D+R+D   I    V G+ILN+PS  + G  +  P+KR+HW+ VR
Sbjct:   119 VIMAALQTRGFEAVWWDKRRDVGSIALPNVTGFILNVPSNLRWGP-LRLPLKRQHWIGVR 177

Query:   130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSYFKEN 185
              + G+YYNLDSKL +P  IG  ++L ++LR  L   + EL +V    +E  +++  +N
Sbjct:   178 EVAGVYYNLDSKLRSPHAIGTADELRKFLRHQLRGKNCELLLVVSEEVEVHQTWKSDN 235

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5EAE5 JOSD1 "Josephin-1" [Bos taurus (taxid:9913)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 85/174 (48%), Positives = 117/174 (67%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
             IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct:    26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85

Query:    70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
             VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct:    86 VIMAALQTKGYEAVWWDKRRDVGAIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query:   130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
              + G YYNLDSKL  PE IG + +L ++L+  L   + EL +V    +E  +S+
Sbjct:   145 EVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198

GO:0006508 "proteolysis" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

RGD|1305388 Josd1 "Josephin domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/174 (49%), Positives = 117/174 (67%)

Query:    11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
             IYHEKQ +ELCALHALNN+FQ+   F++  L EI   LSP T + PH+ S+LG GNYD+N
Sbjct:    26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTVVTPHKKSMLGNGNYDVN 85

Query:    70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
             VIM ALQ KG+E+ W+D+R+D   I    V G+I+N+PS    G  +  P+KR+HW+ VR
Sbjct:    86 VIMAALQTKGYEAVWWDKRRDVGVIALANVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144

Query:   130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
              + G YYNLDSKL  PE IG E +L ++L+  L   + EL +V    +E  +S+
Sbjct:   145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLVVPEEVEAHQSW 198

GO:0006508 "proteolysis" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F1RH21 JOSD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 85/188 (45%), Positives = 122/188 (64%)

Query:     1 MDNSPEAQEI---IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH 57
             M  +P AQ     +YHE+Q  ELCA+HALNN+ Q  + FS+   DEIC  L+P + LNPH
Sbjct:     1 MSQAPGAQPSPPSVYHERQRLELCAVHALNNVLQQ-QLFSQEAADEICKRLAPDSRLNPH 59

Query:    58 RSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVP 117
             RS+LG GNYD+NVIM ALQ +G  + W+DRR+    +   +V G ILN+PS   +G  + 
Sbjct:    60 RSLLGTGNYDVNVIMAALQGQGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLG-LLS 118

Query:   118 TPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSD-IDKELFVVTR-I 175
              P++RRHW+ +R + G+YYNLDSKL  PE +G E+ +  +L   L+  + + L VVT+ +
Sbjct:   119 LPLRRRHWVALRQVGGVYYNLDSKLRAPEVLGNEDSVRAFLAAALAQGLCEVLLVVTKEV 178

Query:   176 ENSKSYFK 183
             E   S+ +
Sbjct:   179 EEKGSWLR 186

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CR30	JOS2_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.4545	0.9677	0.9574	yes	N/A
Q9W422	JOSL_DROME	3, ., 4, ., 1, 9, ., 1, 2	0.5493	0.8655	0.7285	yes	N/A
Q5R739	JOS1_PONAB	3, ., 4, ., 1, 9, ., 1, 2	0.4942	0.9139	0.8415	yes	N/A
Q8TAC2	JOS2_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.4473	0.9838	0.9734	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	186
pfam02099	158	pfam02099, Josephin, Josephin	3e-26

>gnl|CDD|216874 pfam02099, Josephin, Josephin

 Score = 97.8 bits (244), Expect = 3e-26
 Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 33/174 (18%)

Query: 15  KQMKELCALHALNNLFQNPKTFSKADLDEICINL--------SPQTW------LNPHRSI 60
           +Q  +LCA H LNNL Q P  FS+ DL  I   L        S + W        P  ++
Sbjct: 1   RQEGQLCAQHCLNNLLQGP-YFSEFDLASIAKELDQKERNKLSVEHWTPKSFLDEPSHNV 59

Query: 61  LGLGNYDINVIMTALQKKGFE-SNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTP 119
              GN+ I V+ TAL+  G     W   R     +D     G+I N+             
Sbjct: 60  DDTGNFSIQVLETALEVWGLSVIPWHSPRVGASSLDPDLERGFICNL------------- 106

Query: 120 IKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT 173
               HW T+R +NG +YNL+S L  PEHI +   L  +L  + S+    +FVV 
Sbjct: 107 --SEHWFTIRKVNGTWYNLNSLLAAPEHISKFY-LSAFLDQLKSE-GYSVFVVR 156

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PF02099	157	Josephin: Josephin; InterPro: IPR006155 Human gene	100.0
KOG2934|consensus	204		100.0
KOG2935|consensus	315		100.0
cd02424	129	Peptidase_C39E A sub-family of peptidase family C3	92.64
cd02420	125	Peptidase_C39D A sub-family of peptidase family C3	86.89
cd02419	127	Peptidase_C39C A sub-family of peptidase family C3	84.63
cd02549	141	Peptidase_C39A A sub-family of peptidase family C3	83.96

>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease

Probab=100.00  E-value=2.8e-59  Score=378.21  Aligned_cols=142  Identities=48%  Similarity=0.794  Sum_probs=124.0

Q ss_pred             ecchhhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCccC--------------ccCCCCCcCCCCCccHHHHHHHHHhcCC
Q psy16758         15 KQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQT--------------WLNPHRSILGLGNYDINVIMTALQKKGF   80 (186)
Q Consensus        15 kQ~~~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~--------------~~nph~n~~~~GNydinVL~~AL~~~g~   80 (186)
                      ||+++|||+|||||||||| +||+.||++||++||+.|              +.+||+||+++||||||||++||++||+
T Consensus         1 kQ~~~lCalHaLNnLlQ~~-~ft~~dL~~Ia~~Ld~~E~~~~~~~~~~~~~~~~~~s~n~~~~GnysinVL~~AL~~~g~   79 (157)
T PF02099_consen    1 KQELQLCALHALNNLLQGP-YFTAVDLDEIAQELDEEERSLMAEDSWTPLSFLFNPSRNVDGTGNYSINVLMAALQVWGL   79 (157)
T ss_dssp             S-STTSHHHHHHHHHCTSS--S-HHHHHHHHHHHHHHHHHHHHCTSHHHHHHHTSTSSTCSTTSTCECHHHHHHHHCCT-
T ss_pred             CcHHHHHHHHHHHHHhhhh-hcCHHHHHHHHHHhChhhhhhhhccCccchhhccccccCccccCCcCHHHHHHHHHHcCc
Confidence            7999999999999999999 899999999999999853              3589999999999999999999999999


Q ss_pred             eeE-EecCCCCCcccCCcCceEEEeecccccccccccCCCCCCCceEEEEEECCEEEEecCCCCCCeeeCChhHHHHHHH
Q psy16758         81 ESN-WFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLR  159 (186)
Q Consensus        81 ~~~-w~d~r~~~~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~l~~yL~  159 (186)
                      +++ |+|+|.....++++++.|||||.               +|||||||||+|+||||||++++|+.|++ ++|..||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~gfI~N~---------------~~HWf~iRki~~~wyNLDS~l~~P~~i~~-~~l~~fL~  143 (157)
T PF02099_consen   80 ELVPWFDKRMQEASIDPDNEFGFICNL---------------SRHWFAIRKIGGQWYNLDSKLKEPELISD-FYLSAFLQ  143 (157)
T ss_dssp             EEEETTSHHHHHCC--CCCSSEEEEEC---------------TTEEEEEEEETTEEEEECTTTSS-EEE-H-HHHHHHHH
T ss_pred             eEEEccCccchhhhcCchhceEEEecc---------------CcceEEEEeeCCeeEeccCCCCCCcccCH-HHHHHHHH
Confidence            999 66777667888999999999994               89999999999999999999999999987 79999996


Q ss_pred             HHhccCCcEEEEEEe
Q psy16758        160 DVLSDIDKELFVVTR  174 (186)
Q Consensus       160 ~~L~~~g~~iFvV~~  174 (186)
                       ++..+||+||||++
T Consensus       144 -~l~~~g~~ifvV~~  157 (157)
T PF02099_consen  144 -QLQSEGYSIFVVRG  157 (157)
T ss_dssp             -HHHCCTEEEEEEES
T ss_pred             -HHHhCCcEEEEEeC
Confidence             56678999999985

Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.

>KOG2934|consensus

Probab=100.00  E-value=3.2e-56  Score=364.26  Aligned_cols=171  Identities=53%  Similarity=0.925  Sum_probs=166.4

Q ss_pred             ccceeeecchhhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCC
Q psy16758          9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRR   88 (186)
Q Consensus         9 ~~iYhEkQ~~~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r   88 (186)
                      ..||||||++.+||+|||||++|++..||+..+++||.+|.|+.|+|||+++.|.||||+||||+|||+.|++++|||+|
T Consensus        24 ~~iYherq~r~lc~lhAlnnv~q~~n~ftr~~~~d~c~~l~p~s~~~Phrs~~g~Gnydvnvimaalq~~gl~avw~dRr  103 (204)
T KOG2934|consen   24 PGIYHERQRRELCALHALNNVFQRSNAFTRPVLDDICTRLKPRSWLNPHRSWKGPGNYDVNVIMAALQQCGLEAVWLDRR  103 (204)
T ss_pred             CccchhHHHHHHHHHHHhhhhhhccccccchhhHHHHhhcCcccccCccccccCCCcccHHHHHHHHHhcCceeeecccc
Confidence            46999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCcCceEEEeecccccccccccCCCCCCCceEEEEEECCEEEEecCCCCCCeeeCChhHHHHHHHHHhccCCcE
Q psy16758         89 KDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE  168 (186)
Q Consensus        89 ~~~~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~l~~yL~~~L~~~g~~  168 (186)
                      +++..+.++.++|||.|+|+++.+| .++||..+|||+|+|+.+|.|||||||+.+|++||++.++.+||..+++.+-++
T Consensus       104 rd~~~l~L~~v~gfIlnlp~~~slG-~L~Lp~~rrhw~alR~~~g~yynldsklr~P~~ig~e~~~~~fla~hl~~~~~e  182 (204)
T KOG2934|consen  104 RDVTALALSVVFGFILNLPCKFSLG-YLRLPVMRRHWLALRSPPGKYYNLDSKLREPECIGTENDFREFLATHLSMAIEE  182 (204)
T ss_pred             CCcchhhhHHHHHHHHcCCchhccc-cccchhHHhhhHhhhCCCCceecccccccCCcccccchhHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999 699999999999999999999999999999999999999999999999987899


Q ss_pred             EEEEEecCcccc
Q psy16758        169 LFVVTRIENSKS  180 (186)
Q Consensus       169 iFvV~~~~~~~~  180 (186)
                      +|+|..+|+++.
T Consensus       183 l~lvi~ee~~~k  194 (204)
T KOG2934|consen  183 LILVINEESSCK  194 (204)
T ss_pred             heeeeccccccc
Confidence            999999998854

>KOG2935|consensus

Probab=100.00  E-value=8.9e-48  Score=329.90  Aligned_cols=151  Identities=30%  Similarity=0.460  Sum_probs=138.9

Q ss_pred             ccceeeecchhhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCccC-----------ccCCCCCcCCCCCccHHHHHHHHHh
Q psy16758          9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQT-----------WLNPHRSILGLGNYDINVIMTALQK   77 (186)
Q Consensus         9 ~~iYhEkQ~~~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~-----------~~nph~n~~~~GNydinVL~~AL~~   77 (186)
                      +.||||+|+..|||+||||+||||+ +|+..||++-+.+++-.+           +-.|+.||+++|+||||||.+||+.
T Consensus         2 ~~ifhE~QE~~LCAqHclN~lLQg~-~fs~~dLaD~~erm~m~Eg~v~g~~~~~fl~~~SeNm~~sG~FSIQVl~kALe~   80 (315)
T KOG2935|consen    2 GSIFHEVQESNLCAQHCLNTLLQGP-FFSEFDLADGKERMRMAEGGVTGEFYGDFLQQPSENMDDSGFFSIQVLSKALEV   80 (315)
T ss_pred             CchhhhhhhhhHHHHHHHHHHhccc-ccChhhhhhHHHHHHHHhcccccccccccccCCCcCcCccCceeHHHHHHHHHh
Confidence            4799999999999999999999999 999999999988876321           2258999999999999999999999


Q ss_pred             cCCeeEEecCCCCC-cccCCcCceEEEeecccccccccccCCCCCCCceEEEEEECCEEEEecCCCCCCeeeCChhHHHH
Q psy16758         78 KGFESNWFDRRKDP-KCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVE  156 (186)
Q Consensus        78 ~g~~~~w~d~r~~~-~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~l~~  156 (186)
                      ||++++.|..+... ..|||.+..+||||+               +.|||+|||+|++||||||.|.+|+.|++ .+|..
T Consensus        81 w~Leli~~nnP~~~~~~idP~~erafICnl---------------~eHWF~iRKfg~qWfnlnSllagPellSd-tyls~  144 (315)
T KOG2935|consen   81 WGLELIPFNNPEYQPLQIDPINERAFICNL---------------KEHWFTIRKFGKQWFNLNSLLAGPELLSD-TYLSA  144 (315)
T ss_pred             hceeeeecCChhhhhccCCcchhhhhhhcc---------------hhhhhhHhhhcchhccchhhhcchHHHHH-HHHHH
Confidence            99999999999876 578999999999996               89999999999999999999999999999 69999


Q ss_pred             HHHHHhccCCcEEEEEEecCc
Q psy16758        157 YLRDVLSDIDKELFVVTRIEN  177 (186)
Q Consensus       157 yL~~~L~~~g~~iFvV~~~~~  177 (186)
                      ||. +|+++||+||||.|..|
T Consensus       145 FL~-qlq~egySIFVVkG~lP  164 (315)
T KOG2935|consen  145 FLA-QLQQEGYSIFVVKGDLP  164 (315)
T ss_pred             HHH-HHHhCCeeEEEEecCCC
Confidence            994 68889999999999887

>cd02424 Peptidase_C39E A sub-family of peptidase family C39

Probab=92.64  E-value=1.8  Score=32.62  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             hhhHHHHHhhhhhCC---CCCCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCCCCCccc
Q psy16758         18 KELCALHALNNLFQN---PKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCI   94 (186)
Q Consensus        18 ~~lCalHaLNnLlQ~---~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r~~~~~i   94 (186)
                      ..-||+.||=.+++-   . ..+.++|...+   ..          ...| .|+.-|.++++..|+++.-.....  +.+
T Consensus         9 ~~dcgla~l~~i~~~~~g~-~~~~~~l~~~~---~~----------~~~g-~s~~~l~~~a~~~Gl~~k~~~~~~--~~l   71 (129)
T cd02424           9 LNDCGIAVIQMLYNHYYKK-KYDLNELKIKA---NL----------KKNG-LSIYDLENLAKKFGLETESYQGSF--LEF   71 (129)
T ss_pred             ccchHHHHHHHHHHHhcCC-CccHHHHHHHh---CC----------CCCC-ccHHHHHHHHHHcCCceeEEEcCH--HHH
Confidence            346999998888753   3 25555555433   21          1235 899999999999999988764322  112


Q ss_pred             C-CcCceEEEeecccccccccccCCCCCCCceEEEEEE-CCEEEEecCCCCCCeeeCC
Q psy16758         95 D-QQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI-NGIYYNLDSKLDNPEHIGR  150 (186)
Q Consensus        95 ~-~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki-~g~wyNLDS~l~~P~~i~~  150 (186)
                      . .....-.|++.             ....||+.++++ ++.++-.|. -.+|+.++.
T Consensus        72 ~~~~~p~P~i~~~-------------~~~~hfvVl~~~~~~~v~I~DP-~~g~~~~s~  115 (129)
T cd02424          72 LELKNKFIILLKS-------------NGLNHFVIVKKIKKNKFIVLDP-KKGKYKITY  115 (129)
T ss_pred             hhccCCEEEEEec-------------CCCCeEEEEEEEECCEEEEECC-CCCCEEeCH
Confidence            1 11122233321             135799999999 667888999 677887765

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family, which contains Colicin V perocessing peptidase.

>cd02420 Peptidase_C39D A sub-family of peptidase family C39

Probab=86.89  E-value=6.8  Score=28.80  Aligned_cols=99  Identities=11%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             hhHHHHHhhhhhCCCC-CCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCCC-CCcccCC
Q psy16758         19 ELCALHALNNLFQNPK-TFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRK-DPKCIDQ   96 (186)
Q Consensus        19 ~lCalHaLNnLlQ~~~-~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r~-~~~~i~~   96 (186)
                      .-|++.||=.+++--. -.|.++|..   .+...          ..| .+...|.+|++..|+++.-..... .+..+.+
T Consensus        10 ~~~gl~~l~~i~~~~g~~~~~~~l~~---~~~~~----------~~~-~~~~~l~~~a~~~Gl~~~~~~~~~~~L~~~~l   75 (125)
T cd02420          10 TECGAASLAIILAYYGRYVPLSELRI---ACGVS----------RDG-SNASNLLKAAREYGLTAKGYKKDLEALREVSL   75 (125)
T ss_pred             cCHHHHHHHHHHHHcCCCCCHHHHHH---HcCCC----------CCC-CCHHHHHHHHHHcCcccceEecCHHHHhcCCC
Confidence            4688888877775320 266666653   33211          134 699999999999999886553321 1122222


Q ss_pred             cCceEEEeecccccccccccCCCCCCCceEEEEEEC-CEEEEecCCCCCCeeeCC
Q psy16758         97 QKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNIN-GIYYNLDSKLDNPEHIGR  150 (186)
Q Consensus        97 ~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~-g~wyNLDS~l~~P~~i~~  150 (186)
                      +    .|+-              +...||+.|-+++ +.++-.|+.. +|+.++-
T Consensus        76 P----~I~~--------------~~~g~~~Vl~~~~~~~~~i~dp~~-~~~~~s~  111 (125)
T cd02420          76 P----AIVF--------------WNFNHFLVVEGFDKRKVFLNDPAT-GRRTVSL  111 (125)
T ss_pred             C----EEEE--------------eCCCEEEEEEEEeCCEEEEECCCc-CceeecH
Confidence            1    2221              1368999999985 4678888854 7887764

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>cd02419 Peptidase_C39C A sub-family of peptidase family C39

Probab=84.63  E-value=13  Score=27.21  Aligned_cols=99  Identities=11%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             hhHHHHHhhhhhCCCC-CCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCCC-CCcccCC
Q psy16758         19 ELCALHALNNLFQNPK-TFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRK-DPKCIDQ   96 (186)
Q Consensus        19 ~lCalHaLNnLlQ~~~-~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r~-~~~~i~~   96 (186)
                      .-|++.||=.+++--. -++.+++..   .+..           +.+-++...|..+++..|+++......- .+..+.+
T Consensus        10 ~~~~l~~l~~~~~~~g~~~~~~~l~~---~~~~-----------~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~~l~~~~l   75 (127)
T cd02419          10 AECGLACLAMIASYHGHHVDLASLRQ---RFPV-----------SLKGATLADLIDIAQQLGLSTRALRLDLEELGQLKL   75 (127)
T ss_pred             ccHHHHHHHHHHHHcCCCCCHHHHHH---HcCC-----------CCCCcCHHHHHHHHHHCCCceeEEEccHHHHhhCCC
Confidence            3577777766664210 155555543   3321           1244999999999999999987764321 1222222


Q ss_pred             cCceEEEeecccccccccccCCCCCCCceEEEEEECC-EEEEecCCCCCCeeeCC
Q psy16758         97 QKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNING-IYYNLDSKLDNPEHIGR  150 (186)
Q Consensus        97 ~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g-~wyNLDS~l~~P~~i~~  150 (186)
                      +   .++.               ++..||+.|-++++ .+.-.|+.. +|+.++.
T Consensus        76 P---~i~~---------------~~~g~~~Vl~~~~~~~~~i~dp~~-~~~~~~~  111 (127)
T cd02419          76 P---CILH---------------WDMNHFVVLKKVSRRRIVIHDPAL-GKRKLSL  111 (127)
T ss_pred             C---EEEE---------------ECCCEEEEEEEEcCCEEEEECCcc-CCEEEcH
Confidence            1   1221               13579999999865 566668754 6888865

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>cd02549 Peptidase_C39A A sub-family of peptidase family C39

Probab=83.96  E-value=13  Score=27.67  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=67.1

Q ss_pred             cchhhHHHHHhhhhhCCCC-CCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHH-HHhcCCeeEEecCCCCC-c
Q psy16758         16 QMKELCALHALNNLFQNPK-TFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTA-LQKKGFESNWFDRRKDP-K   92 (186)
Q Consensus        16 Q~~~lCalHaLNnLlQ~~~-~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~A-L~~~g~~~~w~d~r~~~-~   92 (186)
                      |...-|+..||-.+++.-. -.+..++...   ....     .....+.| .+..-|.++ ++..|+++........+ .
T Consensus         2 ~~~~~C~~~slamvl~~~g~~~~~~~l~~~---~~~~-----~~~~~~~g-~~~~~l~~~~a~~~G~~~~~~~~~~~~~~   72 (141)
T cd02549           2 QLENGCGPTSLAMVLSYLGVKVTKPQLAAE---GNTY-----DFAKDGYG-TYPKPIVSAAARKYGLVVRPLTGLLALLR   72 (141)
T ss_pred             CCCCccHHHHHHHHHHhcCCCCCHHHHHhh---cccc-----ccCCCCCC-cCHHHHHHHHHhhCCCcEEECCCHHHHHH
Confidence            5567899999999986431 1344444332   1101     11223356 566667777 99999999876432211 2


Q ss_pred             ccCCcCceEEEeecccccccccccCCCCCCCceEEEEEEC--CEEEEecCCCCCCeeeCC
Q psy16758         93 CIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNIN--GIYYNLDSKLDNPEHIGR  150 (186)
Q Consensus        93 ~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~--g~wyNLDS~l~~P~~i~~  150 (186)
                      .++.  -.=+|+.+......       ....||+.|..++  +..+-.|.-...+..++-
T Consensus        73 ~l~~--~~Pvi~~~~~~~~~-------~~~gH~vVv~g~~~~~~~~i~DP~~~~~~~~~~  123 (141)
T cd02549          73 QLAA--GHPVIVSVNLGVSI-------TPSGHAMVVIGYDRKGNVYVNDPGGGRRLVVSF  123 (141)
T ss_pred             HHHC--CCeEEEEEecCccc-------CCCCeEEEEEEEcCCCCEEEECCCCCcCEEEeH
Confidence            2222  12234433111111       1368999999997  567788887667777754

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
2dos_A	176	Structural Basis For The Recognition Of Lys48-Linke		7e-08
2aga_A	190	De-Ubiquitinating Function Of Ataxin-3: Insights Fr		1e-07
2jri_A	182	Solution Structure Of The Josephin Domain Of Ataxin		1e-07
3o65_A	191	Crystal Structure Of A Josephin-Ubiquitin Complex:		4e-06

>pdb|2DOS|A Chain A, Structural Basis For The Recognition Of Lys48-Linked Polyubiquitin Chain By The Josephin Domain Of Ataxin-3, A Putative Deubiquitinating Enzyme Length = 176

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 42/187 (22%)
Query: 7   AQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQ--------------- 51
           + E I+HEKQ   LCA H LNNL Q  + FS  +L  I   L  +               
Sbjct: 5   SMESIFHEKQEGSLCAQHCLNNLLQG-EYFSPVELSSIAHQLDEEERMRMAEGGVTSEDY 63
Query: 52  -TWL-NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPS 108
            T+L  P  ++   G + I VI  AL+  G E   F+  +  +  ID      +I N   
Sbjct: 64  RTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNY-- 121
Query: 109 QFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE 168
                        + HW TVR +   ++NL+S L  PE I        YL   L+ + +E
Sbjct: 122 -------------KEHWFTVRKLGKQWFNLNSLLTGPELISD-----TYLALFLAQLQQE 163
Query: 169 ---LFVV 172
              +FVV
Sbjct: 164 GYSIFVV 170

>pdb|2AGA|A Chain A, De-Ubiquitinating Function Of Ataxin-3: Insights From The Solution Structure Of The Josephin Domain Length = 190

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 42/187 (22%)
Query: 7   AQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQ--------------- 51
           + E I+HEKQ   LCA H LNNL Q  + FS  +L  I   L  +               
Sbjct: 5   SMESIFHEKQEGSLCAQHCLNNLLQG-EYFSPVELSSIAHQLDEEERMRMAEGGVTSEDY 63
Query: 52  -TWL-NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPS 108
            T+L  P  ++   G + I VI  AL+  G E   F+  +  +  ID      +I N   
Sbjct: 64  RTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNY-- 121
Query: 109 QFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE 168
                        + HW TVR +   ++NL+S L  PE I        YL   L+ + +E
Sbjct: 122 -------------KEHWFTVRKLGKQWFNLNSLLTGPELISD-----TYLALFLAQLQQE 163
Query: 169 ---LFVV 172
              +FVV
Sbjct: 164 GYSIFVV 170

>pdb|2JRI|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In Complex With Ubiquitin Molecule. Length = 182

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 9   EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQ----------------T 52
           E I+HEKQ   LCA H LNNL Q  + FS  +L  I   L  +                T
Sbjct: 2   ESIFHEKQEGSLCAQHCLNNLLQG-EYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT 60
Query: 53  WL-NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPSQF 110
           +L  P  ++   G + I VI  AL+  G E   F+  +  +  ID      +I N     
Sbjct: 61  FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNY---- 116
Query: 111 KIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE-- 168
                      + HW TVR +   ++NL+S L  PE I        YL   L+ + +E  
Sbjct: 117 -----------KEHWFTVRKLGKQWFNLNSLLTGPELISD-----TYLALFLAQLQQEGY 160
Query: 169 -LFVV 172
            +FVV
Sbjct: 161 SIFVV 165

>pdb|3O65|A Chain A, Crystal Structure Of A Josephin-Ubiquitin Complex: Evolutionary Restraints On Ataxin-3 Deubiquitinating Activity Length = 191

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 7   AQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINL-------------SPQTW 53
             + I+HEKQ   LCA H LNNL Q  + FS  +L  I   L             + + +
Sbjct: 1   GXDFIFHEKQEGFLCAQHCLNNLLQG-EYFSPVELASIAHQLDEEERXRXAEGGVTSEEY 59
Query: 54  L----NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPS 108
           L     P  +    G + I VI  AL+  G E   F+  +  K  ID      +I N   
Sbjct: 60  LAFLQQPSENXDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNY-- 117
Query: 109 QFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHI 148
                        ++HW T+R     ++NL+S L  PE I
Sbjct: 118 -------------KQHWFTIRKFGKHWFNLNSLLAGPELI 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3o65_A	191	Putative ataxin-3-like protein; papain-like fold,	2e-46
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A Length = 191

 Score =  149 bits (378), Expect = 2e-46
 Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 36/183 (19%)

Query: 9   EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTW--------------- 53
           + I+HEKQ   LCA H LNNL Q    FS  +L  I   L  +                 
Sbjct: 3   DFIFHEKQEGFLCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA 61

Query: 54  --LNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPK-CIDQQKVEGYILNIPSQF 110
               P  ++   G + I VI  AL+  G E   F+  +  K  ID      +I N     
Sbjct: 62  FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNY---- 117

Query: 111 KIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELF 170
                      ++HW T+R     ++NL+S L  PE I  +  L  +L  +       +F
Sbjct: 118 -----------KQHWFTIRKFGKHWFNLNSLLAGPELIS-DTCLANFLARLQQQ-AYSVF 164

Query: 171 VVT 173
           VV 
Sbjct: 165 VVK 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 26/228 (11%), Positives = 63/228 (27%), Gaps = 89/228 (39%)

Query: 36  FSKADLDEICINLSPQT------WL---NP----HRSILGLGNYDINVIMTALQK----K 78
            SK ++D I ++    +      W           + +  +   +   +M+ ++      
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 79  GFESNWFDRRKDPKCIDQQKVEGYILNIPSQFK----------------------IGKYV 116
              +  +  ++D    D Q    Y ++    +                        GK  
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 117 -------PTPIKRR-----HWLTVRN----------INGIYYNLDSKL----DNPEHIG- 149
                     ++ +      WL ++N          +  + Y +D       D+  +I  
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 150 REEDLVEYLRD------------VLSDI-DKELF----------VVTR 174
           R   +   LR             VL ++ + + +          + TR
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3o65_A	191	Putative ataxin-3-like protein; papain-like fold,	100.0
3zua_A	142	CLD, alpha-hemolysin translocation ATP-binding pro	80.77

>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A

Probab=100.00  E-value=5.7e-65  Score=421.23  Aligned_cols=153  Identities=33%  Similarity=0.490  Sum_probs=143.2

Q ss_pred             ccceeeecchhhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCccCc-----------------cCCCCCcCCCCCccHHHH
Q psy16758          9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTW-----------------LNPHRSILGLGNYDINVI   71 (186)
Q Consensus         9 ~~iYhEkQ~~~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~~-----------------~nph~n~~~~GNydinVL   71 (186)
                      +.||||||+++|||+|||||||||+ +||++||++||++||++++                 .+||+||+|+||||||||
T Consensus         3 ~~IYhEkQ~~~LCalHaLNnLLQg~-~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl   81 (191)
T 3o65_A            3 DFIFHEKQEGFLCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVI   81 (191)
T ss_dssp             TTSCCCCCCTTCHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHH
T ss_pred             ccceeeccchhhHHHHHHHHHhccc-cCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHH
Confidence            4699999999999999999999999 8999999999999998765                 389999999999999999


Q ss_pred             HHHHHhcCCeeEEecCCCCC-cccCCcCceEEEeecccccccccccCCCCCCCceEEEEEECCEEEEecCCCCCCeeeCC
Q psy16758         72 MTALQKKGFESNWFDRRKDP-KCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGR  150 (186)
Q Consensus        72 ~~AL~~~g~~~~w~d~r~~~-~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~  150 (186)
                      ++||++||++++|||+|++. ..+|+.++.|||||+               +|||||||||+|+||||||++++|+.|++
T Consensus        82 ~~AL~~~glelv~~d~~~~~~~~~~p~~~~~FI~N~---------------~~HWfaiRkigg~WyNLdS~l~~P~~i~~  146 (191)
T 3o65_A           82 SNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNY---------------KQHWFTIRKFGKHWFNLNSLLAGPELISD  146 (191)
T ss_dssp             HHHHHTTTCEEEETTCHHHHHTCCCGGGCCEEEEEE---------------SSCEEEEEEETTEEEECCTTSSSCEEECH
T ss_pred             HHHHHHcCCeEEECCCchhhhhcCChhhhhhhhhcc---------------ccceeeEEecCCEEEEccCCCCCCCCcCh
Confidence            99999999999999999875 578999999999996               79999999999999999999999999998


Q ss_pred             hhHHHHHHHHHhccCCcEEEEEEecCccc
Q psy16758        151 EEDLVEYLRDVLSDIDKELFVVTRIENSK  179 (186)
Q Consensus       151 ~~~l~~yL~~~L~~~g~~iFvV~~~~~~~  179 (186)
                      + +|..|| ++|+++||+||||++..|..
T Consensus       147 ~-yL~~fL-~ql~~eg~siFvV~g~lP~~  173 (191)
T 3o65_A          147 T-CLANFL-ARLQQQAYSVFVVKGDLPDC  173 (191)
T ss_dssp             H-HHHHHH-GGGGSTTEEEEEEESCCCCC
T ss_pred             H-HHHHHH-HHHHHCCCEEEEEcCCCCCC
Confidence            4 899999 67889999999999987753

>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}

Probab=80.77  E-value=13  Score=27.12  Aligned_cols=100  Identities=11%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             hhHHHHHhhhhhC--CCCCCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCCCCCcccCC
Q psy16758         19 ELCALHALNNLFQ--NPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQ   96 (186)
Q Consensus        19 ~lCalHaLNnLlQ--~~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r~~~~~i~~   96 (186)
                      .-|++.||-.+++  |. -+|.++|.+.   +...           .+-.+..-|.+|.+..|+++..+...  .+.+..
T Consensus        12 ~dcglacLa~i~~~~g~-~~s~~~L~~~---~~~~-----------~~g~s~~~l~~aa~~~Gl~a~~~~~~--~~~L~~   74 (142)
T 3zua_A           12 IDYGLYALEILAQYHNV-SVNPEEIKHR---FDTD-----------GTGLGLTSWLLAAKSLELKVKQVKKT--IDRLNF   74 (142)
T ss_dssp             CCHHHHHHHHHHHHTTC-CCCHHHHHHH---TCTT-----------SSCCCHHHHHHHHHTTTEEEEEEECC--HHHHTT
T ss_pred             CCcHHHHHHHHHHHcCC-CCCHHHHHHH---cCCC-----------cCCcCHHHHHHHHHHCCCeeEEeecC--HHHHhc
Confidence            4699999887764  44 3777777653   2211           23478899999999999999987532  222211


Q ss_pred             cCceEEEeecccccccccccCCCCCCCceEEEEEEC---CEEEEecCCCCCCeeeCC
Q psy16758         97 QKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNIN---GIYYNLDSKLDNPEHIGR  150 (186)
Q Consensus        97 ~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~---g~wyNLDS~l~~P~~i~~  150 (186)
                      - ..=.|+-              +...|||.|-+++   +..+-.|.-...|+.++-
T Consensus        75 l-~lP~Il~--------------~~~g~~~Vv~~~~~~~~~~~I~dP~~g~~~~~s~  116 (142)
T 3zua_A           75 I-SLPALVW--------------REDGRHFILTKVSKEANRYLIFDLEQRNPRVLEQ  116 (142)
T ss_dssp             S-SSSEEEC--------------CTTSCCEEEEEEETTTTEEEEEETTTTEEEEEEH
T ss_pred             C-CCCEEEE--------------EcCCCEEEEEEEeCCCCEEEEEcCCCCCcEEecH
Confidence            0 0112322              1234556666674   579999987666888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00